Query psy4858
Match_columns 979
No_of_seqs 405 out of 996
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 19:27:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3678|consensus 100.0 1E-151 2E-156 1245.2 44.8 600 189-804 156-759 (832)
2 KOG4224|consensus 100.0 1E-45 2.2E-50 400.9 9.1 275 193-486 108-396 (550)
3 KOG1899|consensus 99.9 1.5E-25 3.3E-30 254.5 7.5 229 503-747 544-779 (861)
4 PLN03194 putative disease resi 99.9 2.9E-23 6.3E-28 212.2 12.8 145 648-802 17-178 (187)
5 KOG0249|consensus 99.7 2.2E-17 4.8E-22 191.1 7.2 228 313-574 572-831 (916)
6 PLN03210 Resistant to P. syrin 99.7 7.7E-17 1.7E-21 203.3 12.7 161 651-824 6-196 (1153)
7 PLN03200 cellulose synthase-in 99.6 2.3E-15 5E-20 193.6 19.1 285 204-496 395-723 (2102)
8 smart00255 TIR Toll - interleu 99.6 7.3E-16 1.6E-20 147.7 11.0 131 657-798 1-138 (140)
9 PLN03200 cellulose synthase-in 99.6 1.4E-14 2.9E-19 186.7 20.3 279 202-498 435-766 (2102)
10 PF13676 TIR_2: TIR domain; PD 99.6 5.5E-16 1.2E-20 142.2 0.5 97 660-773 1-98 (102)
11 KOG4224|consensus 99.5 2.3E-14 4.9E-19 157.8 10.9 265 212-496 84-363 (550)
12 KOG0166|consensus 99.5 3.3E-13 7.2E-18 155.9 17.8 323 187-530 127-465 (514)
13 PF05804 KAP: Kinesin-associat 99.4 3.4E-12 7.5E-17 153.5 21.2 329 176-542 254-597 (708)
14 KOG0249|consensus 99.4 3.1E-14 6.7E-19 165.5 0.2 198 503-721 582-798 (916)
15 PF00536 SAM_1: SAM domain (St 99.4 3.8E-13 8.3E-18 114.9 6.5 63 508-571 2-64 (64)
16 PF07647 SAM_2: SAM domain (St 99.4 4E-13 8.6E-18 115.3 5.0 65 506-571 1-66 (66)
17 cd00166 SAM Sterile alpha moti 99.3 5.8E-12 1.3E-16 105.6 6.5 63 508-571 1-63 (63)
18 PF01582 TIR: TIR domain; Int 99.3 4.5E-12 9.8E-17 123.7 5.8 112 660-784 1-125 (141)
19 smart00454 SAM Sterile alpha m 99.3 1.4E-11 3.1E-16 104.2 7.4 66 506-572 1-67 (68)
20 COG5064 SRP1 Karyopherin (impo 99.0 3.4E-10 7.5E-15 124.6 6.7 266 189-477 134-424 (526)
21 PF05804 KAP: Kinesin-associat 98.8 1.6E-08 3.6E-13 122.3 10.7 207 254-480 252-466 (708)
22 KOG3678|consensus 98.8 8.9E-08 1.9E-12 109.0 14.6 321 246-646 173-530 (832)
23 cd00020 ARM Armadillo/beta-cat 98.8 2.8E-08 6E-13 91.1 8.9 118 248-371 2-120 (120)
24 KOG0166|consensus 98.7 1.6E-07 3.5E-12 109.6 15.1 255 206-480 103-377 (514)
25 cd00020 ARM Armadillo/beta-cat 98.7 1.4E-07 3E-12 86.5 10.8 115 208-327 2-119 (120)
26 KOG1048|consensus 98.6 9.1E-07 2E-11 106.3 18.4 249 207-492 269-680 (717)
27 PF07647 SAM_2: SAM domain (St 98.5 8.2E-08 1.8E-12 82.5 4.5 62 579-643 4-66 (66)
28 PF08937 DUF1863: MTH538 TIR-l 98.5 2.2E-07 4.8E-12 90.4 6.8 89 658-756 1-107 (130)
29 KOG4375|consensus 98.5 7.9E-08 1.7E-12 102.9 3.7 68 503-571 204-271 (272)
30 PF04826 Arm_2: Armadillo-like 98.5 1E-06 2.3E-11 95.6 12.2 160 192-362 35-196 (254)
31 KOG1899|consensus 98.4 4.2E-07 9.1E-12 106.0 7.3 132 490-627 607-763 (861)
32 PF00536 SAM_1: SAM domain (St 98.4 5.3E-07 1.2E-11 77.1 5.4 61 580-643 4-64 (64)
33 PF04826 Arm_2: Armadillo-like 98.3 2.8E-06 6.2E-11 92.2 11.3 173 210-403 9-187 (254)
34 KOG4199|consensus 98.3 3E-06 6.5E-11 94.2 10.6 179 193-378 265-451 (461)
35 cd00166 SAM Sterile alpha moti 98.2 2.4E-06 5.1E-11 71.7 5.1 60 580-642 3-62 (63)
36 KOG4384|consensus 98.1 1.7E-06 3.7E-11 96.3 4.6 121 515-646 157-278 (361)
37 KOG1170|consensus 98.1 1.7E-06 3.6E-11 103.4 4.8 70 504-574 993-1062(1099)
38 smart00454 SAM Sterile alpha m 98.1 5.4E-06 1.2E-10 70.1 5.5 63 579-644 4-67 (68)
39 KOG4384|consensus 98.0 6.4E-06 1.4E-10 91.8 5.3 65 509-574 213-278 (361)
40 PF08357 SEFIR: SEFIR domain; 97.9 4.3E-05 9.4E-10 75.4 9.5 114 658-773 1-134 (150)
41 COG5064 SRP1 Karyopherin (impo 97.9 2.7E-05 5.8E-10 86.9 7.0 251 207-478 108-380 (526)
42 PF00514 Arm: Armadillo/beta-c 97.8 2.6E-05 5.6E-10 61.5 3.8 40 288-327 1-40 (41)
43 KOG2160|consensus 97.7 0.0017 3.6E-08 73.4 18.3 232 116-377 52-288 (342)
44 KOG4199|consensus 97.6 0.00033 7.2E-09 78.5 11.3 193 202-405 230-429 (461)
45 PF10508 Proteasom_PSMB: Prote 97.6 0.00069 1.5E-08 80.2 13.3 204 218-436 43-256 (503)
46 PF03224 V-ATPase_H_N: V-ATPas 97.4 0.0012 2.5E-08 73.3 11.3 177 214-403 106-294 (312)
47 KOG1048|consensus 97.3 0.0011 2.4E-08 80.5 11.4 126 201-326 554-682 (717)
48 KOG4374|consensus 97.1 0.0002 4.3E-09 75.8 2.0 62 511-573 151-212 (216)
49 PF10508 Proteasom_PSMB: Prote 97.1 0.0037 8E-08 74.1 12.3 148 202-356 108-257 (503)
50 PRK09687 putative lyase; Provi 96.9 0.0056 1.2E-07 67.6 10.8 132 214-369 55-186 (280)
51 PRK09687 putative lyase; Provi 96.9 0.012 2.5E-07 65.2 12.8 131 215-370 25-156 (280)
52 smart00185 ARM Armadillo/beta- 96.9 0.0015 3.2E-08 50.2 4.2 39 289-327 2-40 (41)
53 KOG2122|consensus 96.8 0.0049 1.1E-07 78.6 9.9 210 181-405 341-585 (2195)
54 KOG4500|consensus 96.6 0.014 3E-07 67.6 11.6 281 210-502 84-396 (604)
55 KOG4403|consensus 96.6 0.0017 3.7E-08 74.2 4.4 60 505-564 131-194 (575)
56 PF09235 Ste50p-SAM: Ste50p, s 96.6 0.003 6.5E-08 56.8 4.4 68 505-573 2-73 (75)
57 KOG4375|consensus 96.0 0.0055 1.2E-07 66.6 3.9 61 580-643 211-271 (272)
58 PF03224 V-ATPase_H_N: V-ATPas 96.0 0.013 2.8E-07 65.1 6.8 205 230-447 30-264 (312)
59 PF00514 Arm: Armadillo/beta-c 96.0 0.011 2.3E-07 46.7 4.3 39 203-241 2-40 (41)
60 KOG2122|consensus 96.0 0.048 1E-06 70.3 11.9 217 258-494 201-465 (2195)
61 KOG0196|consensus 95.9 0.0076 1.7E-07 73.8 5.0 61 582-645 924-985 (996)
62 PRK13800 putative oxidoreducta 95.7 0.13 2.9E-06 65.2 14.8 31 211-241 619-649 (897)
63 PRK13800 putative oxidoreducta 95.7 0.22 4.7E-06 63.4 16.6 237 201-492 637-895 (897)
64 KOG0507|consensus 95.7 0.0015 3.2E-08 79.2 -2.4 132 511-644 297-436 (854)
65 KOG2160|consensus 95.5 0.085 1.8E-06 60.1 10.6 157 286-452 111-285 (342)
66 PF10137 TIR-like: Predicted n 95.4 0.049 1.1E-06 53.9 7.5 106 659-771 1-112 (125)
67 KOG4646|consensus 95.3 0.016 3.6E-07 58.4 3.9 96 297-403 14-110 (173)
68 cd08532 SAM_PNT-PDEF-like Ster 95.1 0.038 8.3E-07 50.4 5.2 64 503-573 7-74 (76)
69 smart00185 ARM Armadillo/beta- 94.9 0.045 9.7E-07 41.9 4.5 38 204-241 3-40 (41)
70 cd00256 VATPase_H VATPase_H, r 94.9 0.34 7.4E-06 57.0 13.5 205 180-403 74-288 (429)
71 KOG0196|consensus 94.7 0.033 7.2E-07 68.5 4.8 62 512-574 924-986 (996)
72 cd08757 SAM_PNT_ESE Sterile al 94.6 0.03 6.6E-07 49.9 3.2 62 506-571 2-67 (68)
73 PF02198 SAM_PNT: Sterile alph 94.6 0.01 2.2E-07 54.6 0.0 70 500-572 11-82 (84)
74 KOG4500|consensus 94.5 0.064 1.4E-06 62.4 6.1 179 243-434 255-456 (604)
75 cd08541 SAM_PNT-FLI-1 Sterile 94.2 0.064 1.4E-06 50.6 4.5 68 502-574 13-85 (91)
76 cd08203 SAM_PNT Sterile alpha 94.2 0.05 1.1E-06 48.1 3.6 60 506-571 2-65 (66)
77 cd08540 SAM_PNT-ERG Sterile al 94.1 0.07 1.5E-06 48.6 4.4 65 504-573 3-72 (75)
78 cd08534 SAM_PNT-GABP-alpha Ste 94.0 0.059 1.3E-06 50.6 3.9 67 502-573 15-85 (89)
79 smart00251 SAM_PNT SAM / Point 93.9 0.037 8.1E-07 51.0 2.4 64 503-572 14-81 (82)
80 cd08535 SAM_PNT-Tel_Yan Steril 93.7 0.066 1.4E-06 47.9 3.5 62 505-572 2-67 (68)
81 KOG1738|consensus 93.7 0.053 1.1E-06 65.2 3.8 69 505-574 3-73 (638)
82 cd08538 SAM_PNT-ESE-2-like Ste 93.7 0.092 2E-06 48.3 4.5 67 504-574 5-75 (78)
83 cd08531 SAM_PNT-ERG_FLI-1 Ster 93.7 0.069 1.5E-06 48.7 3.6 65 504-573 3-72 (75)
84 KOG4374|consensus 93.6 0.033 7.1E-07 59.5 1.7 61 582-645 152-212 (216)
85 cd08533 SAM_PNT-ETS-1,2 Steril 93.6 0.078 1.7E-06 47.9 3.7 63 505-572 3-69 (71)
86 KOG1170|consensus 93.5 0.041 8.8E-07 67.4 2.4 63 580-645 999-1061(1099)
87 PF11841 DUF3361: Domain of un 93.5 0.81 1.7E-05 47.4 11.3 125 207-336 5-138 (160)
88 KOG1222|consensus 93.2 0.37 7.9E-06 57.0 9.2 213 208-439 299-520 (791)
89 PF11701 UNC45-central: Myosin 92.7 0.37 8E-06 49.1 7.5 148 213-369 3-157 (157)
90 cd08542 SAM_PNT-ETS-1 Sterile 92.5 0.15 3.2E-06 48.0 4.0 68 501-573 14-85 (88)
91 PF01602 Adaptin_N: Adaptin N 92.3 0.43 9.4E-06 55.7 8.5 202 218-448 84-292 (526)
92 cd08543 SAM_PNT-ETS-2 Sterile 92.2 0.15 3.2E-06 48.0 3.7 69 501-574 14-86 (89)
93 PF13646 HEAT_2: HEAT repeats; 92.2 0.39 8.4E-06 42.5 6.2 86 215-324 1-88 (88)
94 PF09759 Atx10homo_assoc: Spin 91.2 0.42 9.2E-06 46.0 5.6 60 279-339 8-69 (102)
95 PF13646 HEAT_2: HEAT repeats; 90.7 0.32 6.9E-06 43.1 4.1 87 254-367 1-88 (88)
96 KOG1222|consensus 90.4 0.46 1E-05 56.1 6.0 191 272-476 278-476 (791)
97 cd08539 SAM_PNT-ESE-3-like Ste 90.2 0.4 8.7E-06 43.8 4.2 65 505-573 4-72 (74)
98 cd08536 SAM_PNT-Mae Sterile al 89.7 0.23 4.9E-06 44.3 2.2 44 506-551 2-49 (66)
99 PF13271 DUF4062: Domain of un 89.7 1.3 2.8E-05 40.4 7.3 81 659-744 1-83 (83)
100 PF01602 Adaptin_N: Adaptin N 89.0 0.71 1.5E-05 54.0 6.4 146 214-373 153-298 (526)
101 PF05014 Nuc_deoxyrib_tr: Nucl 89.0 2.5 5.5E-05 40.2 9.0 77 670-757 13-98 (113)
102 PF13764 E3_UbLigase_R4: E3 ub 88.9 3.7 8E-05 52.0 12.7 196 200-408 104-335 (802)
103 PF09597 IGR: IGR protein moti 88.9 0.72 1.6E-05 40.2 4.6 53 514-572 1-56 (57)
104 PF05536 Neurochondrin: Neuroc 88.1 2.9 6.2E-05 50.8 10.7 154 215-374 7-171 (543)
105 cd00256 VATPase_H VATPase_H, r 87.9 11 0.00024 44.8 14.9 253 217-492 147-421 (429)
106 PF13513 HEAT_EZ: HEAT-like re 87.6 0.34 7.5E-06 40.1 1.9 55 313-369 1-55 (55)
107 PF09759 Atx10homo_assoc: Spin 86.1 1.3 2.9E-05 42.7 5.2 63 315-378 2-67 (102)
108 KOG4413|consensus 85.9 7.2 0.00016 44.9 11.4 175 183-372 190-378 (524)
109 cd08537 SAM_PNT-ESE-1-like Ste 84.7 0.95 2.1E-05 41.8 3.3 65 504-572 8-76 (78)
110 KOG0168|consensus 83.2 3.7 8.1E-05 51.7 8.4 170 214-406 168-349 (1051)
111 KOG0946|consensus 81.3 33 0.00071 43.6 15.2 206 228-477 38-264 (970)
112 KOG1293|consensus 80.0 22 0.00048 44.0 13.1 120 254-378 421-540 (678)
113 KOG1945|consensus 79.9 2.1 4.5E-05 49.1 4.4 68 505-573 263-330 (377)
114 PF04063 DUF383: Domain of unk 79.7 4.7 0.0001 42.9 6.7 102 274-378 12-139 (192)
115 KOG1293|consensus 79.5 5.6 0.00012 48.9 8.0 109 266-376 386-495 (678)
116 KOG0168|consensus 76.5 6.6 0.00014 49.6 7.5 148 216-372 214-365 (1051)
117 KOG1517|consensus 74.7 12 0.00025 48.5 9.0 149 298-448 511-667 (1387)
118 KOG4646|consensus 73.7 17 0.00036 37.6 8.3 104 272-378 32-135 (173)
119 PF11698 V-ATPase_H_C: V-ATPas 73.7 2.1 4.4E-05 42.5 2.0 78 289-372 38-116 (119)
120 PF02985 HEAT: HEAT repeat; I 73.6 4.5 9.8E-05 30.3 3.3 27 215-241 2-28 (31)
121 KOG2171|consensus 73.0 19 0.0004 47.0 10.4 151 215-372 350-505 (1075)
122 PF13513 HEAT_EZ: HEAT-like re 70.9 3.2 7E-05 34.3 2.3 48 191-240 8-55 (55)
123 COG4271 Predicted nucleotide-b 70.5 24 0.00053 38.1 9.0 109 659-774 84-201 (233)
124 PTZ00429 beta-adaptin; Provisi 69.5 88 0.0019 40.0 15.1 210 200-447 101-321 (746)
125 COG3613 Nucleoside 2-deoxyribo 67.5 18 0.0004 38.1 7.3 80 669-757 18-107 (172)
126 TIGR02270 conserved hypothetic 67.4 69 0.0015 38.0 12.9 120 215-371 88-207 (410)
127 KOG2759|consensus 67.0 19 0.00041 42.7 8.0 106 208-317 193-310 (442)
128 KOG2999|consensus 66.9 23 0.0005 43.3 8.8 126 204-333 115-246 (713)
129 PF11698 V-ATPase_H_C: V-ATPas 66.6 7.1 0.00015 38.8 3.9 68 254-325 45-112 (119)
130 KOG3665|consensus 65.6 1.7E+02 0.0036 37.3 16.4 186 181-375 391-591 (699)
131 PF12348 CLASP_N: CLASP N term 64.8 54 0.0012 34.4 10.5 181 175-372 22-207 (228)
132 PF08324 PUL: PUL domain; Int 63.8 13 0.00028 40.4 5.8 109 272-381 125-241 (268)
133 PTZ00429 beta-adaptin; Provisi 62.9 49 0.0011 42.1 11.1 135 213-363 179-318 (746)
134 cd01890 LepA LepA subfamily. 62.7 68 0.0015 31.8 10.2 94 696-800 75-175 (179)
135 KOG3930|consensus 62.6 8.6 0.00019 43.7 4.1 50 524-574 19-68 (389)
136 KOG3665|consensus 60.6 56 0.0012 41.3 11.1 174 199-402 499-677 (699)
137 TIGR02270 conserved hypothetic 60.1 1.1E+02 0.0024 36.4 12.8 122 177-326 84-205 (410)
138 PF14359 DUF4406: Domain of un 57.3 71 0.0015 30.3 8.7 66 675-752 20-90 (92)
139 COG1618 Predicted nucleotide k 55.5 1.5E+02 0.0033 31.6 11.4 126 657-798 5-176 (179)
140 KOG2171|consensus 55.2 47 0.001 43.5 9.2 138 213-371 4-147 (1075)
141 cd00738 HGTP_anticodon HGTP an 54.1 31 0.00067 30.8 5.6 62 658-722 2-66 (94)
142 cd00860 ThrRS_anticodon ThrRS 53.4 37 0.0008 30.2 5.9 61 658-721 2-62 (91)
143 PF00009 GTP_EFTU: Elongation 53.0 48 0.001 33.9 7.5 61 684-758 69-132 (188)
144 PF03358 FMN_red: NADPH-depend 52.2 1.1E+02 0.0024 30.0 9.7 54 669-723 16-83 (152)
145 cd03561 VHS VHS domain family; 50.6 59 0.0013 32.2 7.4 83 200-284 19-110 (133)
146 cd03569 VHS_Hrs_Vps27p VHS dom 50.4 56 0.0012 33.1 7.3 81 200-284 23-112 (142)
147 COG4916 Uncharacterized protei 49.2 15 0.00032 41.0 3.2 91 653-754 173-271 (329)
148 PF03129 HGTP_anticodon: Antic 48.0 30 0.00066 31.3 4.6 51 669-722 14-64 (94)
149 KOG1517|consensus 47.9 2.8E+02 0.0061 36.9 14.0 208 156-372 454-672 (1387)
150 cd00881 GTP_translation_factor 45.7 1.3E+02 0.0029 29.6 9.1 58 687-758 65-124 (189)
151 KOG2062|consensus 44.7 24 0.00051 44.5 4.2 52 344-412 591-642 (929)
152 COG1413 FOG: HEAT repeat [Ener 43.7 80 0.0017 35.2 8.0 130 214-369 106-240 (335)
153 PF08045 CDC14: Cell division 43.3 1.4E+02 0.0031 33.5 9.6 101 226-330 104-209 (257)
154 KOG4151|consensus 43.1 46 0.001 42.1 6.4 154 209-378 500-663 (748)
155 cd00858 GlyRS_anticodon GlyRS 42.8 55 0.0012 31.7 5.7 63 656-722 25-89 (121)
156 PF13764 E3_UbLigase_R4: E3 ub 41.9 53 0.0011 42.2 6.8 85 214-310 85-174 (802)
157 COG1413 FOG: HEAT repeat [Ener 41.2 4.4E+02 0.0096 29.4 13.3 33 341-373 179-211 (335)
158 KOG2734|consensus 41.0 1.4E+02 0.003 36.2 9.3 172 200-375 163-350 (536)
159 cd01424 MGS_CPS_II Methylglyox 40.9 2E+02 0.0043 27.3 9.0 61 659-720 2-76 (110)
160 PF10165 Ric8: Guanine nucleot 40.9 67 0.0015 38.3 7.1 112 222-333 41-173 (446)
161 PF06371 Drf_GBD: Diaphanous G 40.8 16 0.00034 37.2 1.7 78 292-370 100-186 (187)
162 PF02985 HEAT: HEAT repeat; I 39.5 32 0.00069 25.7 2.8 27 301-327 2-28 (31)
163 COG5231 VMA13 Vacuolar H+-ATPa 39.0 3.7E+02 0.0081 31.6 12.0 107 191-316 186-299 (432)
164 PF14663 RasGEF_N_2: Rapamycin 38.7 79 0.0017 30.9 6.1 83 214-311 9-92 (115)
165 KOG2759|consensus 38.4 56 0.0012 38.9 5.8 79 244-326 355-436 (442)
166 KOG0301|consensus 37.9 1.2E+02 0.0027 38.0 8.7 144 199-351 575-725 (745)
167 PF04063 DUF383: Domain of unk 37.7 1.1E+02 0.0025 32.6 7.6 79 254-339 54-141 (192)
168 smart00288 VHS Domain present 36.3 1.3E+02 0.0028 30.1 7.2 62 200-261 19-89 (133)
169 KOG4413|consensus 35.9 1.9E+02 0.0041 33.9 9.2 190 177-373 63-288 (524)
170 PF12755 Vac14_Fab1_bd: Vacuol 35.3 38 0.00083 32.3 3.2 66 290-364 23-90 (97)
171 PF04904 NCD1: NAB conserved r 35.3 54 0.0012 30.6 4.0 51 595-645 21-76 (82)
172 KOG1738|consensus 34.9 34 0.00075 42.3 3.5 66 578-644 6-71 (638)
173 COG5369 Uncharacterized conser 34.3 78 0.0017 39.0 6.2 115 211-330 429-547 (743)
174 PF11791 Aconitase_B_N: Aconit 33.6 1.2E+02 0.0025 31.8 6.5 95 218-330 27-126 (154)
175 KOG2734|consensus 33.5 7.5E+02 0.016 30.3 13.7 150 183-338 100-264 (536)
176 KOG3930|consensus 33.3 37 0.0008 38.9 3.2 45 597-642 20-64 (389)
177 PRK05433 GTP-binding protein L 33.0 2.3E+02 0.005 35.3 10.2 54 696-759 82-137 (600)
178 PF09597 IGR: IGR protein moti 32.3 74 0.0016 28.0 4.2 55 584-643 1-55 (57)
179 KOG0462|consensus 31.8 1E+02 0.0022 38.2 6.6 72 695-776 132-207 (650)
180 TIGR01393 lepA GTP-binding pro 31.7 2.6E+02 0.0056 34.8 10.3 54 696-759 78-133 (595)
181 PF10165 Ric8: Guanine nucleot 31.1 1.1E+02 0.0024 36.5 6.9 105 244-349 13-129 (446)
182 PF11701 UNC45-central: Myosin 30.8 2.1E+02 0.0045 29.3 7.9 58 204-261 76-137 (157)
183 KOG2973|consensus 30.5 60 0.0013 37.5 4.3 71 302-378 47-118 (353)
184 cd00859 HisRS_anticodon HisRS 30.3 1.4E+02 0.003 25.8 5.8 60 658-720 2-61 (91)
185 PF11841 DUF3361: Domain of un 29.9 62 0.0013 33.9 3.9 42 293-346 5-52 (160)
186 PLN03110 Rab GTPase; Provision 29.8 3.3E+02 0.0072 28.7 9.5 102 696-803 69-179 (216)
187 PF13543 KSR1-SAM: SAM like do 28.9 87 0.0019 31.8 4.6 59 512-571 67-129 (129)
188 PF05536 Neurochondrin: Neuroc 28.7 2.3E+02 0.0051 34.8 9.2 119 272-403 19-151 (543)
189 cd03568 VHS_STAM VHS domain fa 28.2 1.5E+02 0.0033 30.2 6.3 80 200-283 19-107 (144)
190 PF12755 Vac14_Fab1_bd: Vacuol 27.9 1.5E+02 0.0032 28.4 5.8 65 215-286 29-96 (97)
191 PRK02261 methylaspartate mutas 27.6 6.5E+02 0.014 25.4 10.9 117 665-800 11-133 (137)
192 KOG4403|consensus 27.5 52 0.0011 39.2 3.2 61 585-646 141-205 (575)
193 PF12348 CLASP_N: CLASP N term 27.3 5.6E+02 0.012 26.8 10.7 95 200-295 112-215 (228)
194 PF03807 F420_oxidored: NADP o 26.5 2E+02 0.0042 26.1 6.2 70 656-754 24-93 (96)
195 TIGR03376 glycerol3P_DH glycer 25.9 2.3E+02 0.0049 32.9 8.0 101 656-773 29-136 (342)
196 PF00790 VHS: VHS domain; Int 25.9 2.3E+02 0.005 28.3 7.1 78 184-261 6-94 (140)
197 KOG3804|consensus 25.9 28 0.00061 41.0 0.8 73 498-574 54-130 (390)
198 KOG2973|consensus 25.6 2.1E+02 0.0046 33.3 7.4 105 217-333 7-116 (353)
199 cd01888 eIF2_gamma eIF2-gamma 25.6 2.7E+02 0.0058 29.1 7.8 30 687-720 86-117 (203)
200 cd02042 ParA ParA and ParB of 25.6 2.3E+02 0.005 25.9 6.6 63 660-722 3-74 (104)
201 cd01867 Rab8_Rab10_Rab13_like 25.6 5.6E+02 0.012 25.2 9.8 94 699-798 65-165 (167)
202 PF06025 DUF913: Domain of Unk 25.2 60 0.0013 38.0 3.2 35 277-312 340-374 (379)
203 COG5096 Vesicle coat complex, 25.2 2.2E+02 0.0048 36.6 8.2 106 200-326 88-193 (757)
204 KOG0946|consensus 24.2 1.7E+03 0.038 29.3 20.5 222 118-351 17-263 (970)
205 KOG3791|consensus 23.2 43 0.00094 41.1 1.6 55 511-568 475-529 (569)
206 PF01915 Glyco_hydro_3_C: Glyc 23.0 2.8E+02 0.0061 29.5 7.5 126 671-803 47-180 (227)
207 cd05565 PTS_IIB_lactose PTS_II 22.9 2.9E+02 0.0064 26.6 6.9 65 669-754 13-78 (99)
208 PTZ00345 glycerol-3-phosphate 21.9 4.6E+02 0.0099 30.8 9.5 90 656-759 40-133 (365)
209 PF04904 NCD1: NAB conserved r 21.7 2.3E+02 0.0051 26.6 5.6 61 513-573 11-76 (82)
210 PRK10569 NAD(P)H-dependent FMN 21.6 2.2E+02 0.0048 30.1 6.3 82 670-757 17-108 (191)
211 KOG4151|consensus 21.6 1.5E+02 0.0033 37.8 5.8 145 242-407 450-599 (748)
212 cd03567 VHS_GGA VHS domain fam 20.9 1.7E+02 0.0036 29.8 5.0 63 200-262 20-91 (139)
213 PF12717 Cnd1: non-SMC mitotic 20.6 99 0.0021 31.9 3.4 65 301-372 27-93 (178)
214 cd00861 ProRS_anticodon_short 20.4 1.9E+02 0.0041 25.9 4.9 50 670-722 17-66 (94)
215 cd04165 GTPBP1_like GTPBP1-lik 20.4 3.6E+02 0.0077 29.1 7.7 64 681-758 80-148 (224)
216 cd01858 NGP_1 NGP-1. Autoanti 20.2 1.3E+02 0.0028 30.0 4.1 48 703-758 2-49 (157)
217 TIGR00624 tag DNA-3-methyladen 20.2 1.4E+02 0.0031 31.8 4.5 90 596-687 53-153 (179)
218 PF12719 Cnd3: Nuclear condens 20.1 6.7E+02 0.015 28.0 10.1 151 215-378 28-192 (298)
No 1
>KOG3678|consensus
Probab=100.00 E-value=1.1e-151 Score=1245.23 Aligned_cols=600 Identities=50% Similarity=0.858 Sum_probs=589.1
Q ss_pred HHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChh--HHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccc
Q psy4858 189 QKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLD--LQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTK 266 (979)
Q Consensus 189 ~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~--~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk 266 (979)
.+.|+.|.+|++++++|||+||..||+|+||+++++|+.+ |+..||++||||++.+||+|||++|++++++|| |
T Consensus 156 ~~~~aa~aV~~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lA----K 231 (832)
T KOG3678|consen 156 GGGLAAAAVGREVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLA----K 231 (832)
T ss_pred CcccchhhhhHHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhh----h
Confidence 6789999999999999999999999999999999999977 599999999999999999999999999999999 8
Q ss_pred cccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcch
Q psy4858 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVW 346 (979)
Q Consensus 267 ~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~w 346 (979)
.++.++++|...|||+||||||+++|++||.+||||++++|||+.||++|||||.||+||++|||.+.|++|+++++++|
T Consensus 232 ~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EW 311 (832)
T KOG3678|consen 232 EREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEW 311 (832)
T ss_pred hcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhh
Q psy4858 347 LFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQ 426 (979)
Q Consensus 347 L~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~ 426 (979)
||+|||+.|+.+|||||+|+|+||+|||+|.+ |.+||++.||+||+.+|+|..|||+...++||++++||+
T Consensus 312 LF~LA~skDel~R~~AClAV~vlat~KE~E~~---------VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~Lq 382 (832)
T KOG3678|consen 312 LFPLAFSKDELLRLHACLAVAVLATNKEVERE---------VRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQ 382 (832)
T ss_pred hhhhhcchHHHHHHHHHHHHhhhhhhhhhhHH---------HhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHH
Confidence 99999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccCcccCcCCCCC
Q psy4858 427 KLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKLSQQV 506 (979)
Q Consensus 427 ~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gEevp~kl~~~V 506 (979)
||||||+|++.|+||++|||||.||+|||.|+.+++|.+||||+.||+|++||++++++||..||..+|||+|.++.++|
T Consensus 383 RLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~~l~~qV 462 (832)
T KOG3678|consen 383 RLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPYKLAQQV 462 (832)
T ss_pred HhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccChhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcccCCCCccChHH
Q psy4858 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYSSKDVTNLNN 586 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~yss~d~~~l~e 586 (979)
+.|++.||+.|+++|||++|++.|.+..|||++||+|||+||+.++||.+..|||||+|+++.||..++|+++|..|++.
T Consensus 463 PgWt~AdVQ~WvkkIGFeeY~EkFakQ~VDGDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~AdYSs~DeSNLdn 542 (832)
T KOG3678|consen 463 PGWTCADVQYWVKKIGFEEYVEKFAKQMVDGDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAADYSSVDESNLDN 542 (832)
T ss_pred CCcchHHHHHHHHHhCHHHHHHHHHHHhccchHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhcccccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhccccccCCCCCCCCCeeEeccc
Q psy4858 587 FLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKEYEDNPDKNLDVFISYRR 666 (979)
Q Consensus 587 wL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~~~~~~~~~~~~yDVFISYRR 666 (979)
||..+.|+|++|||+|+.||+|+..|.+||+|++++.|||+|.+||++|++|.+...|.+ ........+.+||||||||
T Consensus 543 ~L~gLsPels~YTY~mlt~GvnRSLLssltde~m~naCGI~~~iHR~kl~qA~eta~H~~-~v~~a~~skq~DVFISYRR 621 (832)
T KOG3678|consen 543 FLMGLSPELSVYTYQMLTNGVNRSLLSSLTDEMMQNACGITNPIHRLKLTQAFETAKHPD-DVEVAMLSKQIDVFISYRR 621 (832)
T ss_pred HHhcCChhHHHHhHHHhhccccHHHHHHhhHHHHHHhcCccchHHHHHHHHHHHhhcCCC-ccccccccCCcceEEEeec
Confidence 999999999999999999999999999999999999999999999999999999999985 4444567889999999999
Q ss_pred CCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHh
Q psy4858 667 SNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ 746 (979)
Q Consensus 667 ~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~ 746 (979)
+.|.++|++|+.+|+.+||+||||++++.+|+|...|.++|..+++||+|++|+++++|++| ++|.||||+||..|++
T Consensus 622 stGnQLASLiKV~LQL~GyrVFIDVdKL~AGKFdssLlkni~aAkhFiLVLtP~sLDr~lnD--~nCeDWVHKEl~~Afe 699 (832)
T KOG3678|consen 622 STGNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLND--DNCEDWVHKELKCAFE 699 (832)
T ss_pred cccHHHHHHHHHHHHhcCceEEEehhhhhcccccHHHHHHHHhhheeEEEeCcchHHHHhcc--ccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCeEEEEecC-CCCCCCC-CChHHHHHHhhhcccccccccHHHHHHHHHHHHhhcccCc
Q psy4858 747 SGCNIIPILDN-FAWPDPE-QLPADMRAICKFNGVRWIHDYQDACVDKLERFMRGELNSY 804 (979)
Q Consensus 747 ~~k~IIPVl~~-f~~pd~e-~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~g~l~~~ 804 (979)
++|||||||+. |+||.++ .+|+||+.+..||||+|.|+||++|++||+|||.|+++++
T Consensus 700 ~~KNIiPI~D~aFE~Pt~ed~iPnDirmi~kyNGvKWvHdYQdA~maKvvRFitGe~nRt 759 (832)
T KOG3678|consen 700 HQKNIIPIFDTAFEFPTKEDQIPNDIRMITKYNGVKWVHDYQDACMAKVVRFITGELNRT 759 (832)
T ss_pred hcCCeeeeecccccCCCchhcCcHHHHHHHhccCeeeehhhHHHHHHHHHHHHhccccCC
Confidence 99999999997 9999987 8999999999999999999999999999999999999986
No 2
>KOG4224|consensus
Probab=100.00 E-value=1e-45 Score=400.85 Aligned_cols=275 Identities=22% Similarity=0.319 Sum_probs=247.8
Q ss_pred ccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 193 AVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 193 a~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
+++.+ ++..+.|-.|+..||+|+||.+|+++.+++||++++||+++++ ++||.+|+++| |++|++|| |. ||
T Consensus 108 alGnl--AVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLa----ks-kd 180 (550)
T KOG4224|consen 108 ALGNL--AVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLA----KS-KD 180 (550)
T ss_pred hhccc--eeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhc----cc-ch
Confidence 45666 8889999999999999999999999999999999999999964 79999999999 99999999 77 89
Q ss_pred cchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc
Q psy4858 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL 350 (979)
Q Consensus 271 ~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L 350 (979)
.+++|++||+|.|| +||.|+|+.||..||+|+||.++.++|++++|||++|+.|+|++..++...+..+++++.-|+.|
T Consensus 181 irvqrnatgaLlnm-Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 181 IRVQRNATGALLNM-THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred hhHHHHHHHHHHHh-hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999999977765566788899999999
Q ss_pred cccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhh-hcCChhhhh-----hhhhhcccC----C
Q psy4858 351 AFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFV-MSHSPSEFA-----KSNLAHAHG----Q 420 (979)
Q Consensus 351 a~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~-~~~~P~~fA-----r~~l~~~~g----~ 420 (979)
|++++|++||+|.+||+||++|++|+.+ |+++|.+|++..++ +..-|..+| |+.++|..+ .
T Consensus 260 md~~s~kvkcqA~lALrnlasdt~Yq~e---------iv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASDTEYQRE---------IVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred HhCCChHHHHHHHHHHhhhcccchhhhH---------HHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 9999999999999999999999999999 99999997665555 444565554 677777654 6
Q ss_pred Cchhhhhhhhcccc-chHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhc-CCccchhhh
Q psy4858 421 NRNWLQKLVPVLSS-KREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVAS-CPNAVASKY 486 (979)
Q Consensus 421 ~~g~L~~LvplL~s-~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLas-Spnd~askl 486 (979)
++|||+|||.+|++ ++||+||+|..++ +|.+ .+.++|...|.+.|||++|+.+.. .|-.+++++
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstL-rnLA-asse~n~~~i~esgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTL-RNLA-ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHH-HHHh-hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHH
Confidence 99999999999999 9999999999998 5564 489999999999999999999998 665555555
No 3
>KOG1899|consensus
Probab=99.92 E-value=1.5e-25 Score=254.48 Aligned_cols=229 Identities=15% Similarity=0.297 Sum_probs=196.4
Q ss_pred CCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc---cCCC
Q psy4858 503 SQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD---YSSK 579 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~---yss~ 579 (979)
..++..|+.|+||+||..+||++|.+....|.-.|..|+..+..|++++|||+++.|||||..+++.|..... -...
T Consensus 544 ~~pfa~W~~EqvcnWlae~Gl~qY~n~~r~wv~Sg~tfltaS~qd~EkeLnIKhplHRKkl~lal~ai~~keee~ka~kl 623 (861)
T KOG1899|consen 544 PLPFADWRSEQVCNWLAEIGLGQYMNEVRRWVRSGRTFLTASPQDYEKELNIKHPLHRKKLALALRAIEEKEEEPKANKL 623 (861)
T ss_pred CCchhhccHHHHHHHHHHhchHHHHHHHHHHHhcCchhhcCCHHHHHHHhccCCchHHHHHHHHHHHhccccccccccch
Confidence 3468899999999999999999999999999999999999999999999999999999999999999976542 3467
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhccccccCCCCCCCCC
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKEYEDNPDKNLD 659 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~~~~~~~~~~~~yD 659 (979)
|..|+..||++|| ||||+..|.++.||+++|++||.+||.. +++++..|+.+|.+||++|+.+.+.+.+
T Consensus 624 Dv~wvlRWLDDIG--LPQYKdqF~E~rVDgrmL~ylTvnDll~-lkVvs~lHhaSlkraIqvLr~n~fnpnc-------- 692 (861)
T KOG1899|consen 624 DVHWVLRWLDDIG--LPQYKDQFAENRVDGRMLHYLTVNDLLE-LKVVSALHHASLKRAIQVLRKNDFNPNC-------- 692 (861)
T ss_pred hHHHHHHHHHhcC--ChhhHHHHhhhccchhhHhhhhHhhhhH-HHHHHHHHHHHHHHHHHHHHHhccChhh--------
Confidence 8889999999999 9999999999999999999999999995 9999999999999999999987633211
Q ss_pred eeEecccCCccchHHHHHH--HHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhccc--CCCcCCh
Q psy4858 660 VFISYRRSNGSQLASLLKV--HLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMED--NESECKD 735 (979)
Q Consensus 660 VFISYRR~Dg~~~As~L~e--~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~--~i~~~Sd 735 (979)
. .||.+.++......+ .-+|...+|+-|.++|...+|.++|+.+..+.. ++|+.|.|-...+.. .|++.++
T Consensus 693 -l--~rr~p~de~~~~Psed~Vv~WTnhrvmeWLrsiDLAEytpNLrgaGVhGa--LmiyEPrFtaetlA~lLniPP~KT 767 (861)
T KOG1899|consen 693 -L--ERRIPQDEVEKYPSEDVVVRWTNHRVMEWLRSIDLAEYTPNLRGAGVHGA--LMIYEPRFTAETLAELLNIPPHKT 767 (861)
T ss_pred -h--hhcCccchhhcCCChhHHHHhhhHHHHHHHHhccHHHhCcccccCCCCcc--eEEecccccHHHHHHHHcCCchHH
Confidence 1 133233333332333 567889999999999999999999999999988 899999987644444 6899999
Q ss_pred hHHHHHHHHHhc
Q psy4858 736 WVHREIVAALQS 747 (979)
Q Consensus 736 WV~rEL~~Al~~ 747 (979)
..+++|.+-|+.
T Consensus 768 LLRRHLtthFn~ 779 (861)
T KOG1899|consen 768 LLRRHLTTHFNQ 779 (861)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=99.89 E-value=2.9e-23 Score=212.16 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=128.2
Q ss_pred cccCCCCCCCCCeeEecccCCc-cchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhh
Q psy4858 648 KEYEDNPDKNLDVFISYRRSNG-SQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRC 725 (979)
Q Consensus 648 ~~~~~~~~~~yDVFISYRR~Dg-~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~ 725 (979)
+|++......||||||||+.|. ..|+++|+.+|+.+|++||+|.+++++|+ +.+.|.++|+.|++.|+|+||+|+
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya--- 93 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYC--- 93 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcc---
Confidence 4555667899999999999995 68999999999999999999999999996 999999999999999999999985
Q ss_pred cccCCCcCChhHHHHHHHHHhcCCeEEEEecCCC-----CC--------CCCCChHHHHHHhhhcccccc--cccHHHHH
Q psy4858 726 MEDNESECKDWVHREIVAALQSGCNIIPILDNFA-----WP--------DPEQLPADMRAICKFNGVRWI--HDYQDACV 790 (979)
Q Consensus 726 ~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~-----~p--------d~e~LPedLr~la~~ngi~w~--~~yq~a~I 790 (979)
.|.||++||+.++++++.||||||+.. .+ ....|..+|+.++++.|+.|. +.++.++|
T Consensus 94 -------~S~WCLdEL~~I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i 166 (187)
T PLN03194 94 -------ESYFCLHELALIMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVV 166 (187)
T ss_pred -------cchhHHHHHHHHHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHH
Confidence 479999999999999999999999842 21 134899999999999998875 46789999
Q ss_pred HHHHHHHhhccc
Q psy4858 791 DKLERFMRGELN 802 (979)
Q Consensus 791 dkIvr~I~g~l~ 802 (979)
++|+..|..+|-
T Consensus 167 ~~iv~~v~k~l~ 178 (187)
T PLN03194 167 TMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHH
Confidence 999999987753
No 5
>KOG0249|consensus
Probab=99.69 E-value=2.2e-17 Score=191.11 Aligned_cols=228 Identities=29% Similarity=0.406 Sum_probs=193.6
Q ss_pred hhHHHHHHHhhhhhcccCCchhHHHH-HhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhh
Q psy4858 313 IETLRHCAGALANLSLYGGAENQEAM-IKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKS 391 (979)
Q Consensus 313 ~~~lr~ca~ALaNlAl~~~~~~q~~m-i~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~s 391 (979)
.+.++.|..+.-.++.|+|+..-.|. ++.|+|+|+|..+. .+||. +||..-.+|.||+.+ |..+
T Consensus 572 h~lleea~~~~~p~~~w~~p~vvawlel~vgmpa~yva~c~---~nVks---g~im~~lsd~eiq~~---------igis 636 (916)
T KOG0249|consen 572 HELLEEARRKGLPFAQWDGPTVVAWLELWVGMPAWYVAACR---ANVKS---GAIMSALSDTEIQRE---------IGIS 636 (916)
T ss_pred HHHHHHHHHccCchhhcCCCeeeehhhHHhccHHHHHHHHH---HHhhh---hHHHHhhhhHHHHhh---------hccc
Confidence 56899999999999999999988887 89999999999998 55554 789999999999999 7777
Q ss_pred CCccch------HhhhhcCChhhhhhhhhhcccC------CCchhhhhhhhccccchHHHHHHHHHHhhH------Hhhh
Q psy4858 392 GTLDLV------EPFVMSHSPSEFAKSNLAHAHG------QNRNWLQKLVPVLSSKREEARNLAAFHFCM------EAGI 453 (979)
Q Consensus 392 G~l~lv------~~~~~~~~P~~fAr~~l~~~~g------~~~g~L~~LvplL~s~~eE~q~lAafhl~~------ea~i 453 (979)
..++.+ .++++-.+|.+...+.+..++| ++.+||..| .-.|+...|+-|. ++.-
T Consensus 637 nplhrlklrLaiqe~~sltsps~p~tsr~~laygdmnHewigneWLPsl--------GLpQYrsyFme~LvDARMLdhLs 708 (916)
T KOG0249|consen 637 NPLHRLKLRLAIQEMVSLTSPSAPPTSRTPLAYGDMNHEWIGNEWLPSL--------GLPQYRSYFMECLVDARMLDHLS 708 (916)
T ss_pred chhhhhhhHHHHHHHHHhcCCCCCCccccchhhcccccceecccccccc--------CchHHHHHHHHHHHHHHHHHhhh
Confidence 766654 5566666676665555555555 477899988 7889999999886 3344
Q ss_pred hhhc----CCchhhhhhC---ccchhhhhhcCCccchhhhhhhhHhhccCcccCcCCCCCCCCCHHHHHHHHHHcCchHH
Q psy4858 454 KKQQ----GKTDIFKEIG---AIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEY 526 (979)
Q Consensus 454 Kk~q----~n~~~F~eiG---aIe~LkrLasSpnd~asklAaqaLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~eY 526 (979)
||+. ++.+.|+++. +|.|||+| +|..+.|+.++|++.+... +|..||+++|..|++.|||++|
T Consensus 709 KkdLr~~LkmvdsFHr~Sl~yGImcLkrl---------nYDrk~Le~RRe~sq~~i~-DvlVWsN~RvirWV~~igL~ey 778 (916)
T KOG0249|consen 709 KKDLRGHLKMVDSFHRTSLQYGIMCLKRL---------NYDRKELERRREESQTEIT-DVLVWSNDRVIRWVQSIGLGEY 778 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh---------cccHHHHHHHHHhhhcccc-cceEeecHHHHHHHHhcCHHHH
Confidence 5544 4889999997 89999999 7999999999999999886 9999999999999999999999
Q ss_pred HHHHHhcCCChhHHhcCChhh------hccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 527 ANNFVESRVDGDLLLQLNEEH------LRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 527 ~~~F~en~IDG~~LL~LTeeD------L~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+.++.+.||+|.+| .|++.+ |..+|+.++.+.|+.|.+++..|-...
T Consensus 779 a~NL~eSGVHGaLl-aLdetFd~s~lAl~LqIptqn~qaRq~Le~eF~nLi~~g 831 (916)
T KOG0249|consen 779 ANNLKESGVHGALL-ALDETFDYSTLALALQIPTQNTQARQLLEREFNNLLALG 831 (916)
T ss_pred hhhhhhhcccceee-eecccCChHHHHHHHcCCCcchHHHHHHHHHHHhhhccc
Confidence 99999999999988 999987 555788899999999999999997655
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=7.7e-17 Score=203.35 Aligned_cols=161 Identities=17% Similarity=0.270 Sum_probs=136.9
Q ss_pred CCCCCCCCCeeEecccCCc-cchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhccc
Q psy4858 651 EDNPDKNLDVFISYRRSNG-SQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMED 728 (979)
Q Consensus 651 ~~~~~~~yDVFISYRR~Dg-~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~ 728 (979)
+.+..+.||||||||+.|. ..|++||+.+|.+.|+++|+|. +++.|+ +.++|.++|+.|++.|+|+|++|.
T Consensus 6 ~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya------ 78 (1153)
T PLN03210 6 SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA------ 78 (1153)
T ss_pred CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc------
Confidence 3456789999999999994 7899999999999999999996 699996 999999999999999999999985
Q ss_pred CCCcCChhHHHHHHHHHhc----CCeEEEEecCCC----------C-------------CCCCCChHHHHHHhhhccccc
Q psy4858 729 NESECKDWVHREIVAALQS----GCNIIPILDNFA----------W-------------PDPEQLPADMRAICKFNGVRW 781 (979)
Q Consensus 729 ~i~~~SdWV~rEL~~Al~~----~k~IIPVl~~f~----------~-------------pd~e~LPedLr~la~~ngi~w 781 (979)
.|.||.+||+.++++ +..||||||++. | .....|..+|..++++.|++.
T Consensus 79 ----~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~ 154 (1153)
T PLN03210 79 ----SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHS 154 (1153)
T ss_pred ----cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceec
Confidence 579999999999986 468999999731 1 124589999999999999875
Q ss_pred c-cccHHHHHHHHHHHHhhcccCccccCCCCCCCCCCccccccC
Q psy4858 782 I-HDYQDACVDKLERFMRGELNSYRSALSVKSDPPSTPNILNKV 824 (979)
Q Consensus 782 ~-~~yq~a~IdkIvr~I~g~l~~~~~~~~~~~~~~g~~~~~~~~ 824 (979)
. +.++...|++|++.|..+++..+. ...++.+|..++..+.
T Consensus 155 ~~~~~E~~~i~~Iv~~v~~~l~~~~~--~~~~~~vG~~~~l~~l 196 (1153)
T PLN03210 155 QNWPNEAKMIEEIANDVLGKLNLTPS--NDFEDFVGIEDHIAKM 196 (1153)
T ss_pred CCCCCHHHHHHHHHHHHHHhhccccC--cccccccchHHHHHHH
Confidence 4 367888999999999999976433 4457789998887665
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.65 E-value=2.3e-15 Score=193.62 Aligned_cols=285 Identities=14% Similarity=0.122 Sum_probs=224.1
Q ss_pred HHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
.+|..|.+.|++.+|+.++..++.++|..++.+|..+.. .++|..|++.| +..|+++... .+.++++.+..+
T Consensus 395 ~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s-----~s~~iQ~~A~~~ 469 (2102)
T PLN03200 395 YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL-----SSEQQQEYAVAL 469 (2102)
T ss_pred HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 467788999999999999999999999999999999973 48999999998 9999999943 234888999999
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHH-hcCCcchhccccccCCccch
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMI-KRKVPVWLFPLAFHNDDNIK 359 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi-~~~~~~wL~~La~s~dd~vr 359 (979)
|.++.+.++++++.+++.|||+.|+.+|++++..++++|+.||.||+.+. .+.+.++ +.|++..|+.+..+++..+|
T Consensus 470 L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~--~qir~iV~~aGAIppLV~LL~sgd~~~q 547 (2102)
T PLN03200 470 LAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS--EDIRACVESAGAVPALLWLLKNGGPKGQ 547 (2102)
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999864 4445555 77999999999999999999
Q ss_pred hhHHHHHHHHhcc-----------------hHHHHHHHhhhhHH------------HHHhhCCccchHhhhhcCChhhh-
Q psy4858 360 YYACLAIAVLVAN-----------------TEIEAAVLKSVQEA------------AVLKSGTLDLVEPFVMSHSPSEF- 409 (979)
Q Consensus 360 ~~A~lAla~Lasn-----------------~ei~~~~~~~~~~~------------~V~~sG~l~lv~~~~~~~~P~~f- 409 (979)
-.|+-||++|+.+ .++...+|+.|-++ .+...|+++.+..++++.++..-
T Consensus 548 ~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk 627 (2102)
T PLN03200 548 EIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQE 627 (2102)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHH
Confidence 9999999999632 23333334444221 12246899999999999887533
Q ss_pred ----hhhhhhc-ccC-----CCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCC
Q psy4858 410 ----AKSNLAH-AHG-----QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP 479 (979)
Q Consensus 410 ----Ar~~l~~-~~g-----~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSp 479 (979)
+..++.+ .++ ..+|.+.||+.+|++.+.+.+.-||..+. +...--.+++...+.+.|+|++|-++..++
T Consensus 628 ~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~-nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~ 706 (2102)
T PLN03200 628 KAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALA-ALSRSIKENRKVSYAAEDAIKPLIKLAKSS 706 (2102)
T ss_pred HHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHH-HHHhCCCHHHHHHHHHcCCHHHHHHHHhCC
Confidence 2222221 111 36789999999999988777777777764 233111444566678899999999999887
Q ss_pred ccchhhhhhhhHhhccC
Q psy4858 480 NAVASKYAAQTLRLIGE 496 (979)
Q Consensus 480 nd~asklAaqaLe~~gE 496 (979)
+.-...-+..||..+-+
T Consensus 707 d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 707 SIEVAEQAVCALANLLS 723 (2102)
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 66655666667665443
No 8
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.64 E-value=7.3e-16 Score=147.71 Aligned_cols=131 Identities=28% Similarity=0.439 Sum_probs=105.7
Q ss_pred CCCeeEecccC-C-ccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCC
Q psy4858 657 NLDVFISYRRS-N-GSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECK 734 (979)
Q Consensus 657 ~yDVFISYRR~-D-g~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~S 734 (979)
.|||||||++. + ..+++..|.+.|...|+.||.|...+..|.+. +|.++|++|+.+|+|+||+|+. |
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~----------S 69 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAE----------S 69 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECccccc----------C
Confidence 48999999993 2 37899999999999999999997654444554 9999999999999999999975 6
Q ss_pred hhHHHHHHHHHh-----cCCeEEEEecCCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHHHHHh
Q psy4858 735 DWVHREIVAALQ-----SGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLERFMR 798 (979)
Q Consensus 735 dWV~rEL~~Al~-----~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~ 798 (979)
+||..|+..|++ .+++||||+++.....+..++..|+.+...++++|.++..+..-.++...|.
T Consensus 70 ~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 70 EWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred hhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 899999999987 5689999988632223456778899888888899998766556666666554
No 9
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=1.4e-14 Score=186.69 Aligned_cols=279 Identities=14% Similarity=0.114 Sum_probs=219.9
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGT 278 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~ 278 (979)
....+..|.+.||+.+|++++.+++.++|..|+++|.++.. ++||.-|++.| +.+|++|... .+.+.+..+.
T Consensus 435 ~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-----~~~~iqeeAa 509 (2102)
T PLN03200 435 KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-----GSQKAKEDSA 509 (2102)
T ss_pred CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-----CCHHHHHHHH
Confidence 46678999999999999999999999999999999999964 48999999999 9999999943 2347888888
Q ss_pred hHhhhhhhcChhhHHHHh-hcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchh-----------------------
Q psy4858 279 GILEHLFKHSEGTCSDVI-GLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAEN----------------------- 334 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV-~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~----------------------- 334 (979)
-+|.|+=.| ++++..+| +.|++++|+.+++++|+.+++.|+.||.||+-++.+..
T Consensus 510 wAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vL 588 (2102)
T PLN03200 510 TVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVL 588 (2102)
T ss_pred HHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHH
Confidence 899999445 45555555 78999999999999999999999999999965442221
Q ss_pred ------------HHH-HHhcCCcchhccccccCCccchhhHHHHHHHHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhh
Q psy4858 335 ------------QEA-MIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPF 400 (979)
Q Consensus 335 ------------q~~-mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~ 400 (979)
|.. ....|++..|+.|..++++.+|-.||.+|++++++ +++..+ |+..|+++++..+
T Consensus 589 gnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a---------vv~agaIpPLV~L 659 (2102)
T PLN03200 589 GHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES---------LATDEIINPCIKL 659 (2102)
T ss_pred HHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH---------HHHcCCHHHHHHH
Confidence 111 12468999999999999999999999999999987 555566 8888888777777
Q ss_pred hhcCChh-----hhhhhhhhc--ccC-----CCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCc
Q psy4858 401 VMSHSPS-----EFAKSNLAH--AHG-----QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGA 468 (979)
Q Consensus 401 ~~~~~P~-----~fAr~~l~~--~~g-----~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGa 468 (979)
+++.+.. ..|..++.. .++ ..+|.+++|+.+|.+...+....|+.-+.. . -+..++...|...|+
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALan-L--l~~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN-L--LSDPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHH-H--HcCchHHHHHHhcCc
Confidence 7776653 334333321 111 467899999999999777766666666531 2 234456777888899
Q ss_pred cchhhhhhcCCccchhhhhhhhHhhccCcc
Q psy4858 469 IEPLKKVASCPNAVASKYAAQTLRLIGETV 498 (979)
Q Consensus 469 Ie~LkrLasSpnd~asklAaqaLe~~gEev 498 (979)
|.+|.++.+++++-..+-|+.||.......
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 999999999999988899999987655443
No 10
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.56 E-value=5.5e-16 Score=142.20 Aligned_cols=97 Identities=30% Similarity=0.578 Sum_probs=82.2
Q ss_pred eeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHH
Q psy4858 660 VFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVH 738 (979)
Q Consensus 660 VFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~ 738 (979)
|||||+++| ..+|..|++.|+..|++||+|. ++++|+ |.+.|.++|++|+.+|+++||+|+. |+||.
T Consensus 1 VFIS~~~~D-~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~----------s~~~~ 68 (102)
T PF13676_consen 1 VFISYSSED-REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLK----------SPWCR 68 (102)
T ss_dssp EEEEEEGGG-CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHC----------THHHH
T ss_pred eEEEecCCc-HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECccccc----------ChHHH
Confidence 799999999 8899999999999999999997 999996 9999999999999999999999875 68999
Q ss_pred HHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHH
Q psy4858 739 REIVAALQSGCNIIPILDNFAWPDPEQLPADMRAI 773 (979)
Q Consensus 739 rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~l 773 (979)
.|+..|.+.+++||||+.+ +.++|+.|+.+
T Consensus 69 ~E~~~a~~~~~~iipv~~~-----~~~~p~~l~~~ 98 (102)
T PF13676_consen 69 FELGAAWKRGKPIIPVRLD-----PCELPGPLRGL 98 (102)
T ss_dssp HHHHHHHCTSESEEEEECS-----GGGS-GGGGGS
T ss_pred HHHHHHHHCCCEEEEEEEC-----CcCCCHHHHhc
Confidence 9999999999999999754 22677776543
No 11
>KOG4224|consensus
Probab=99.54 E-value=2.3e-14 Score=157.82 Aligned_cols=265 Identities=18% Similarity=0.189 Sum_probs=214.8
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcCh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSE 289 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe 289 (979)
..-+++..-++++++.++||.+.-.++|++++ +|+-.||+-+ |++|++=+.. ..+++++++.|-+-||-+- +
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmt-----d~vevqcnaVgCitnLaT~-d 157 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMT-----DGVEVQCNAVGCITNLATF-D 157 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcC-----CCcEEEeeehhhhhhhhcc-c
Confidence 34567888999999999999999999999875 9999999996 9999988843 3479999999999999666 9
Q ss_pred hhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 290 GTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 290 ~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
+++.+|.+.|||.+|..+-++.|.-++|++++||.|+.--. +|.+.++..|+...||.++.++|..+|||+|-||.|.
T Consensus 158 ~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~--EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 158 SNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR--ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred cchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh--hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999996655 6778999999999999999999999999999999999
Q ss_pred hcchHHHHHHHhhhhHHHHHhhC--CccchHhhhhcCChh-----hhhhhhhhc--cc---CCCchhhhhhhhccccchH
Q psy4858 370 VANTEIEAAVLKSVQEAAVLKSG--TLDLVEPFVMSHSPS-----EFAKSNLAH--AH---GQNRNWLQKLVPVLSSKRE 437 (979)
Q Consensus 370 asn~ei~~~~~~~~~~~~V~~sG--~l~lv~~~~~~~~P~-----~fAr~~l~~--~~---g~~~g~L~~LvplL~s~~e 437 (979)
+-|..-++- .+++| .++-+..+..+.+|- .+|..+++. .+ ...+|-|..||.||++...
T Consensus 236 aVd~~~Rk~---------Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~ 306 (550)
T KOG4224|consen 236 AVDRRARKI---------LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMG 306 (550)
T ss_pred hhhHHHHHH---------HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcch
Confidence 999888887 77787 445555666666663 345555542 12 2488999999999999765
Q ss_pred HHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCC-ccchhhhhhhhHhhccC
Q psy4858 438 EARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP-NAVASKYAAQTLRLIGE 496 (979)
Q Consensus 438 E~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSp-nd~asklAaqaLe~~gE 496 (979)
.-.--..|+. +|.++ -..|.-.+.+.|-..+|+|+.+++ |+-..+-|..+|.-..-
T Consensus 307 plilasVaCI-rnisi--hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 307 PLILASVACI-RNISI--HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hHHHHHHHHH-hhccc--ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 5533333332 35544 456888899999999999999977 55455557777776543
No 12
>KOG0166|consensus
Probab=99.51 E-value=3.3e-13 Score=155.94 Aligned_cols=323 Identities=20% Similarity=0.219 Sum_probs=242.9
Q ss_pred HHHHhhccCCcchhH-HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhhc-hhHHHhhhh
Q psy4858 187 LMQKAWAVPTHGHEI-GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENG-LDKVVRVAC 262 (979)
Q Consensus 187 ~~~~Awa~p~~~~~~-~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~G-l~~lv~la~ 262 (979)
-.+-||++..+ +. ....-..+++.|.+.+||.++.+++..++..|+-.|+|++-+ .=|++|.+.| +.+|+.+.-
T Consensus 127 q~eAAWaLTnI--Asgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 127 QFEAAWALTNI--ASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHH--hcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 46789999998 55 456678899999999999999999999999999999999854 8899999999 999999983
Q ss_pred hccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcC
Q psy4858 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRK 342 (979)
Q Consensus 263 ~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~ 342 (979)
+ . .....-|++|=+|-||++|.+--=.--.-...||+|+-++.+.|++++--+.-||++|+ +|+++.=..+++-|
T Consensus 205 ~---~-~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLs-dg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 205 K---S-DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLT-DGSNEKIQMVIDAG 279 (514)
T ss_pred c---c-cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-cCChHHHHHHHHcc
Confidence 2 2 22468899999999999999622221222356789999999999999999999999996 66677667789999
Q ss_pred CcchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh------hhhhhhhh-
Q psy4858 343 VPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS------EFAKSNLA- 415 (979)
Q Consensus 343 ~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~------~fAr~~l~- 415 (979)
++.-|+.|..+.+++++--|..|+.|.++=.+.++.. |..+|.++.+..+++.+.+. .+..+|-.
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~--------vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV--------VINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH--------HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999885 99999999999999954332 23333321
Q ss_pred cccC-----CCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhh
Q psy4858 416 HAHG-----QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490 (979)
Q Consensus 416 ~~~g-----~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqa 490 (979)
.++- .++|.+..|+.+|.+.....|-=||+-.+ |+.+....+-.....+.|.|++|-.+..|++.-.-..+.-+
T Consensus 352 G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs-N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 352 GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS-NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH-hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 1111 48899999999999966666666666654 56554555566777899999999888766544333444444
Q ss_pred HhhccCcccCcCCCCCCCCCHHHHHHHHHHcCchHHHHHH
Q psy4858 491 LRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNF 530 (979)
Q Consensus 491 Le~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F 530 (979)
|+.+-+-.+.... ... +.++.-++++|--+-.+.+
T Consensus 431 l~nil~~~e~~~~--~~~---n~~~~~IEe~ggldkiE~L 465 (514)
T KOG0166|consen 431 LENILKVGEAEKN--RGT---NPLAIMIEEAGGLDKIENL 465 (514)
T ss_pred HHHHHHHHHHhcc--ccc---cHHHHHHHHccChhHHHHh
Confidence 4443222211110 000 6666666666544444444
No 13
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.45 E-value=3.4e-12 Score=153.46 Aligned_cols=329 Identities=15% Similarity=0.185 Sum_probs=243.4
Q ss_pred chhHHHHHHHHHHHHhhc-cCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhh-ccchhhHHHhhc
Q psy4858 176 RAPAVLDKVNDLMQKAWA-VPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL-TTENRDHVVENG 253 (979)
Q Consensus 176 ~~~~~~~~~~~~~~~Awa-~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G 253 (979)
+...++.+-.++++-|.. |-.+ +-...+...+++.|++.+|++.+...+.++...++++|..|- ..+||+.|++.|
T Consensus 254 k~~~l~~kQeqLlrv~~~lLlNL--Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g 331 (708)
T PF05804_consen 254 KLQTLIRKQEQLLRVAFYLLLNL--AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG 331 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 556777777888887764 4555 456678889999999999999999999999999999999995 569999999999
Q ss_pred -hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCc
Q psy4858 254 -LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGA 332 (979)
Q Consensus 254 -l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~ 332 (979)
+++|+++. +. ++.+....++++|-|| .+..+.|.++|+.|.+|.|+.+|.. +.....|...|.||+++.
T Consensus 332 iV~kL~kLl----~s-~~~~l~~~aLrlL~NL-Sfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd-- 401 (708)
T PF05804_consen 332 IVEKLLKLL----PS-ENEDLVNVALRLLFNL-SFDPELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDD-- 401 (708)
T ss_pred CHHHHHHHh----cC-CCHHHHHHHHHHHHHh-CcCHHHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCH--
Confidence 99999999 44 4458999999999999 9999999999999999999999974 456678999999999998
Q ss_pred hhHHHHHhcCCcchhccccccC-CccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCc-cchHhhhhcCChhhh-
Q psy4858 333 ENQEAMIKRKVPVWLFPLAFHN-DDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTL-DLVEPFVMSHSPSEF- 409 (979)
Q Consensus 333 ~~q~~mi~~~~~~wL~~La~s~-dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l-~lv~~~~~~~~P~~f- 409 (979)
+++..+...++++.|+.++.+. ++.++..+...+.||+.|++.... |.++|++ .|+.-.+++.+|.-+
T Consensus 402 ~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaql---------m~~g~gL~~L~~ra~~~~D~lLlK 472 (708)
T PF05804_consen 402 EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQL---------MCEGNGLQSLMKRALKTRDPLLLK 472 (708)
T ss_pred hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHH---------HHhcCcHHHHHHHHHhcccHHHHH
Confidence 5556677888999998876654 457777776677889999999988 7787777 477788888888754
Q ss_pred -hhhhhhcccC---CCchhhhhhhhcccc-chHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCC---cc
Q psy4858 410 -AKSNLAHAHG---QNRNWLQKLVPVLSS-KREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP---NA 481 (979)
Q Consensus 410 -Ar~~l~~~~g---~~~g~L~~LvplL~s-~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSp---nd 481 (979)
-||.+.|... .-.+|+.+|+..+.. ++++..+-..-.+ .|..+ ++.+-...+.+-+-++-|+.+...+ +|
T Consensus 473 lIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiL-aNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dD 550 (708)
T PF05804_consen 473 LIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGIL-ANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDD 550 (708)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH-Hhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChH
Confidence 6888878521 133488888888877 5555444433343 24443 2333344556668888888887632 23
Q ss_pred chhhhhhhhHhhccCcccCcCCCCCCCCCHHHHHHHHHHcCc-hHHHHHHHhcCCChhHHhc
Q psy4858 482 VASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGF-AEYANNFVESRVDGDLLLQ 542 (979)
Q Consensus 482 ~asklAaqaLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL-~eY~~~F~en~IDG~~LL~ 542 (979)
..-+. .-..|--+ ..++.+.+|.+-|+ ....+.|...+-|-...++
T Consensus 551 l~LE~----Vi~~gtla-----------~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQ 597 (708)
T PF05804_consen 551 LLLEV----VILLGTLA-----------SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQ 597 (708)
T ss_pred HHHHH----HHHHHHHH-----------CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHH
Confidence 22222 22222111 24566777777775 4566666655555555443
No 14
>KOG0249|consensus
Probab=99.41 E-value=3.1e-14 Score=165.48 Aligned_cols=198 Identities=21% Similarity=0.347 Sum_probs=168.8
Q ss_pred CCCCCCCCHHHHHHHHHH-cCch-HHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc------
Q psy4858 503 SQQVPLWSTEDVREWVRQ-IGFA-EYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA------ 574 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~-IGL~-eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~------ 574 (979)
..++..|.-..|..||+- .|++ .|+..|..|...|..+..|.+..+..++||.++.||.++-.+|+++....
T Consensus 582 ~~p~~~w~~p~vvawlel~vgmpa~yva~c~~nVksg~im~~lsd~eiq~~igisnplhrlklrLaiqe~~sltsps~p~ 661 (916)
T KOG0249|consen 582 GLPFAQWDGPTVVAWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPP 661 (916)
T ss_pred cCchhhcCCCeeeehhhHHhccHHHHHHHHHHHhhhhHHHHhhhhHHHHhhhcccchhhhhhhHHHHHHHHHhcCCCCCC
Confidence 347899999999999995 5997 89999999999999999999999999999999999999999999998433
Q ss_pred ------ccCCCCccCh-HHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhccc
Q psy4858 575 ------DYSSKDVTNL-NNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWN 647 (979)
Q Consensus 575 ------~yss~d~~~l-~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~~ 647 (979)
-|......|+ ++||-.+| |+||.--|++|-||.+||-+|+..||...+|++.+|||.+|--+|-+|+.-
T Consensus 662 tsr~~laygdmnHewigneWLPslG--LpQYrsyFme~LvDARMLdhLsKkdLr~~LkmvdsFHr~Sl~yGImcLkrl-- 737 (916)
T KOG0249|consen 662 TSRTPLAYGDMNHEWIGNEWLPSLG--LPQYRSYFMECLVDARMLDHLSKKDLRGHLKMVDSFHRTSLQYGIMCLKRL-- 737 (916)
T ss_pred ccccchhhcccccceeccccccccC--chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--
Confidence 1223333344 69999999 999999999999999999999999999999999999999999999999753
Q ss_pred cccCCCCCCCCCeeEecccCCc----cchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECccc
Q psy4858 648 KEYEDNPDKNLDVFISYRRSNG----SQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKA 721 (979)
Q Consensus 648 ~~~~~~~~~~yDVFISYRR~Dg----~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~ 721 (979)
.|-|.+- .+--..+++.|.|.+-+|..|+..|..|+|+.+|.++..|.. ++++.++|
T Consensus 738 ---------------nYDrk~Le~RRe~sq~~i~DvlVWsN~RvirWV~~igL~eya~NL~eSGVHGa--LlaLdetF 798 (916)
T KOG0249|consen 738 ---------------NYDRKELERRREESQTEITDVLVWSNDRVIRWVQSIGLGEYANNLKESGVHGA--LLALDETF 798 (916)
T ss_pred ---------------cccHHHHHHHHHhhhcccccceEeecHHHHHHHHhcCHHHHhhhhhhhcccce--eeeecccC
Confidence 2433330 111114678888999999999999999999999999988887 88888886
No 15
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=99.40 E-value=3.8e-13 Score=114.87 Aligned_cols=63 Identities=43% Similarity=0.816 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 508 ~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
.|++++|++||+.+||++|.+.|.++.|||..|+.||++||. ++||.++|||++|+++|+.||
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~g~~L~~lt~~dL~-~lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYIDGEDLLSLTEEDLE-ELGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSSHHHHTTSCHHHHH-HTT-SSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCchHHHHHhcCHHHHH-HcCCCCHHHHHHHHHHHHHhC
Confidence 699999999999999999999999999999999999999998 599999999999999999986
No 16
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=99.38 E-value=4e-13 Score=115.30 Aligned_cols=65 Identities=48% Similarity=0.869 Sum_probs=62.6
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 506 V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
|..|+.++|++||..+||++|++.|.+++|+| ..|+.||++||+ ++||.+.+||++|+++|+.|+
T Consensus 1 v~~w~~~~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 1 VSTWSPEDVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp GGGHCHHHHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence 46799999999999999999999999999999 999999999998 899999999999999999986
No 17
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=99.28 E-value=5.8e-12 Score=105.60 Aligned_cols=63 Identities=46% Similarity=0.866 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 508 ~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
.|++++|+.||+.+|+++|++.|.++++||..|+.|++++|. ++||.+++||++|+++|+.|+
T Consensus 1 ~w~~~~V~~wL~~~~~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~~i~~l~ 63 (63)
T cd00166 1 NWSPEDVAEWLESLGLGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILKAIQKLK 63 (63)
T ss_pred CCCHHHHHHHHHHcChHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence 599999999999999999999999999999999999999998 899999999999999998874
No 18
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.27 E-value=4.5e-12 Score=123.67 Aligned_cols=112 Identities=29% Similarity=0.539 Sum_probs=90.9
Q ss_pred eeEeccc-CCccchHHHHHHHHHhc--CCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCCh
Q psy4858 660 VFISYRR-SNGSQLASLLKVHLELR--QFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKD 735 (979)
Q Consensus 660 VFISYRR-~Dg~~~As~L~e~Le~~--G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~Sd 735 (979)
|||||+. +|...++.+|...|+.. |+++|++.+++.+|. +.++|.++|++|+..|+|+|++|+. +.
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~----------s~ 70 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLS----------SE 70 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHH----------HT
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeeccccc----------cc
Confidence 7999999 78889999999999999 999999999999995 8899999999999999999999986 47
Q ss_pred hHHHHHHHHHhc----C--CeEEEEecCCCCCCCCCCh--HHHHHHhhh-cccccccc
Q psy4858 736 WVHREIVAALQS----G--CNIIPILDNFAWPDPEQLP--ADMRAICKF-NGVRWIHD 784 (979)
Q Consensus 736 WV~rEL~~Al~~----~--k~IIPVl~~f~~pd~e~LP--edLr~la~~-ngi~w~~~ 784 (979)
||..|+..|+++ + +.||||+++.. +.+++ ..++.+..+ ..++|..+
T Consensus 71 wc~~el~~a~~~~~~~~~~~~Il~v~~~v~---~~~~~~~~~~~~~~~~~~~~~w~~~ 125 (141)
T PF01582_consen 71 WCLFELQEALERLLEEGRDKLILPVFYDVS---PSDVRPDQSLRFLLRFLTYLRWPDD 125 (141)
T ss_dssp HHHHHHHHHHHHHHCSTCTTEEEEESSSS----CHHCHTHHHHHHHHHCTHCEETSSS
T ss_pred chhhhhhhhhhhccccccccceeeEeccCC---hhhcChhhhHHHHHHhhhheeCCCC
Confidence 999999999874 4 78999999852 22444 344444443 46778765
No 19
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=99.25 E-value=1.4e-11 Score=104.16 Aligned_cols=66 Identities=41% Similarity=0.801 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCC-hhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLN-EEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 506 V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LT-eeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
+..|+.++|++||+.+||++|++.|.+++|+|..|+.++ +++|+ ++||.+++||++|+++|+.|+.
T Consensus 1 ~~~w~~~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l~-~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 1 VSQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLK-ELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCCCCHHHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHHH-HcCCCcHHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999999999999 77886 7999999999999999999874
No 20
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.02 E-value=3.4e-10 Score=124.57 Aligned_cols=266 Identities=21% Similarity=0.256 Sum_probs=205.0
Q ss_pred HHhhccCCcchhHHHH-HHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhc
Q psy4858 189 QKAWAVPTHGHEIGYS-LCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVC 264 (979)
Q Consensus 189 ~~Awa~p~~~~~~~~~-lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~ 264 (979)
+-||++-.+ +.+-. --...+++|+..++|+++.+++.+|+-.|+-.|+|++- +.=||||.+.| |++|++|..
T Consensus 134 EAaWalTNi--aSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~-- 209 (526)
T COG5064 134 EAAWALTNI--ASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL-- 209 (526)
T ss_pred HHHHHHhhh--ccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH--
Confidence 789999888 44221 12346899999999999999999999999999999984 48999999999 999999994
Q ss_pred cccccccchhhhhhhHhhhhhhc-----ChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHH
Q psy4858 265 TKNINSVEHSRVGTGILEHLFKH-----SEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMI 339 (979)
Q Consensus 265 tk~~~~~~~~r~~~giL~~lfkH-----Se~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi 339 (979)
.+..++..-|++|=.|.||-.- +..+-++ +||.|..++-+.|++++--|--|++-|+ +|.+++-.+++
T Consensus 210 -ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq-----alpiL~KLiys~D~evlvDA~WAiSYls-Dg~~E~i~avl 282 (526)
T COG5064 210 -SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ-----ALPILAKLIYSRDPEVLVDACWAISYLS-DGPNEKIQAVL 282 (526)
T ss_pred -hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH-----HHHHHHHHHhhcCHHHHHHHHHHHHHhc-cCcHHHHHHHH
Confidence 2334478899999999999322 2223333 5778999999999999999999999884 88888888899
Q ss_pred hcCCcchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhh-----hh
Q psy4858 340 KRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKS-----NL 414 (979)
Q Consensus 340 ~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~-----~l 414 (979)
+.|.|..|+.|..|.+.+|+..|..++.|.++-...|..+ |.++|.+.-+.+++++ |-+--|- .+
T Consensus 283 d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqv--------iI~~G~L~a~~~lLs~--~ke~irKEaCWTiS 352 (526)
T COG5064 283 DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQV--------IINCGALKAFRSLLSS--PKENIRKEACWTIS 352 (526)
T ss_pred hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceeh--------heecccHHHHHHHhcC--hhhhhhhhhheeec
Confidence 9999999999999999999999999999999999999886 9999999999999887 6432211 11
Q ss_pred hcccC--------CCchhhhhhhhcccc---chHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhc
Q psy4858 415 AHAHG--------QNRNWLQKLVPVLSS---KREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVAS 477 (979)
Q Consensus 415 ~~~~g--------~~~g~L~~LvplL~s---~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLas 477 (979)
.+.-| .+++...+|+.+|++ +-.+.-|-|.+.. +-.+. ..-...+...+.|.|.+|-.+.-
T Consensus 353 NITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa-tsgg~-~~PD~iryLv~qG~IkpLc~~L~ 424 (526)
T COG5064 353 NITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA-TSGGL-NRPDIIRYLVSQGFIKPLCDLLD 424 (526)
T ss_pred ccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh-hcccc-CCchHHHHHHHccchhHHHHHHh
Confidence 11112 477899999999999 2233336666653 21211 00012344577799999877765
No 21
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.79 E-value=1.6e-08 Score=122.27 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=167.4
Q ss_pred hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch
Q psy4858 254 LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 254 l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
+.++-.+. +.|. ...|++..+|.|| .....+..++++.|.+..|+..|.+.+.+++--|.+.|-+|++++ +
T Consensus 252 ~kk~~~l~----~kQe--qLlrv~~~lLlNL-Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--E 322 (708)
T PF05804_consen 252 LKKLQTLI----RKQE--QLLRVAFYLLLNL-AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--E 322 (708)
T ss_pred HHHHHHHH----HHHH--HHHHHHHHHHHHH-hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--H
Confidence 44554555 3334 8899999999999 999999999999999999999999999999999999999999999 8
Q ss_pred hHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhh
Q psy4858 334 NQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSN 413 (979)
Q Consensus 334 ~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~ 413 (979)
|+..|.+.|+++.|..+..+.++.++-.|..+|.||+.|++++.. |++.|.+|.+.+|+...+-...+...
T Consensus 323 NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~---------mV~~GlIPkLv~LL~d~~~~~val~i 393 (708)
T PF05804_consen 323 NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ---------MVSLGLIPKLVELLKDPNFREVALKI 393 (708)
T ss_pred HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH---------HHHCCCcHHHHHHhCCCchHHHHHHH
Confidence 889999999999999999999888888999999999999999999 99999999999999863322334333
Q ss_pred hhc-cc-------CCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCc
Q psy4858 414 LAH-AH-------GQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPN 480 (979)
Q Consensus 414 l~~-~~-------g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpn 480 (979)
+.| +. -...++++-|+.+|-+..++...+.+..+|.|.+ ...+|.+.+.+.|+++.|.+.+-...
T Consensus 394 Ly~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa--~~~rnaqlm~~g~gL~~L~~ra~~~~ 466 (708)
T PF05804_consen 394 LYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA--LNKRNAQLMCEGNGLQSLMKRALKTR 466 (708)
T ss_pred HHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh--cCHHHHHHHHhcCcHHHHHHHHHhcc
Confidence 322 11 1244588889898777555544556666666776 37788899999889998877765433
No 22
>KOG3678|consensus
Probab=98.77 E-value=8.9e-08 Score=108.97 Aligned_cols=321 Identities=17% Similarity=0.254 Sum_probs=179.8
Q ss_pred hhHHHhhc-hhHHHhhhhhccccccccchhhhhh-hHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-ChhHHHHHHHh
Q psy4858 246 RDHVVENG-LDKVVRVACVCTKNINSVEHSRVGT-GILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-DIETLRHCAGA 322 (979)
Q Consensus 246 r~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~-giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~A 322 (979)
.|+|---| |+.|+++--.-.-+ -+-|+-. -+||.. -+.+|+.++++.| +.+++-+-+-. .+++.|-.++-
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~e----t~vRve~~rlLEq~--~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~i 245 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLE----TSVRVEAARLLEQI--LVAENRDRVARIG-LGVILNLAKEREPVELARSVAGI 245 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchh----HHHHHHHHHHHHHH--HhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHH
Confidence 56776666 99999987432222 1123322 257766 4778999999998 88888777654 79999999999
Q ss_pred hhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc--hHHHHHHHhhhhHHHHHhhCCccchHhh
Q psy4858 323 LANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN--TEIEAAVLKSVQEAAVLKSGTLDLVEPF 400 (979)
Q Consensus 323 LaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn--~ei~~~~~~~~~~~~V~~sG~l~lv~~~ 400 (979)
|-|+=-.....+| ++++-|+..-..--+..+++-+--|++|||+|.+-- .+.+.- |++
T Consensus 246 l~~mFKHSeet~~-~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrr---------mve---------- 305 (832)
T KOG3678|consen 246 LEHMFKHSEETCQ-RLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRR---------MVE---------- 305 (832)
T ss_pred HHHHhhhhHHHHH-HHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHH---------HHH----------
Confidence 9998555544554 456666666666667778887777888999986643 344443 222
Q ss_pred hhcCChhhhhhhhhhcccCCCchhhhhhhhccccch---HHHHHHHHHHhhHHhhhhhhcCCchhhhhhC---ccchhhh
Q psy4858 401 VMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKR---EEARNLAAFHFCMEAGIKKQQGKTDIFKEIG---AIEPLKK 474 (979)
Q Consensus 401 ~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~---eE~q~lAafhl~~ea~iKk~q~n~~~F~eiG---aIe~Lkr 474 (979)
.+.++||=+| -.+.. +-+-|+|.+.++.+-. -.......| -|++|..
T Consensus 306 ------------------Kr~~EWLF~L---A~skDel~R~~AClAV~vlat~KE------~E~~VrkS~TlaLVEPlva 358 (832)
T KOG3678|consen 306 ------------------KRAAEWLFPL---AFSKDELLRLHACLAVAVLATNKE------VEREVRKSGTLALVEPLVA 358 (832)
T ss_pred ------------------hhhhhhhhhh---hcchHHHHHHHHHHHHhhhhhhhh------hhHHHhhccchhhhhhhhh
Confidence 2334454332 33332 3344666666543211 111122222 2444432
Q ss_pred hhcCCccchhhhhhhhHhhccCcccCcCCCCCCCCCHHHHHHHHHHcC-chHHHHHHHhcCCChhHHhcCChh-------
Q psy4858 475 VASCPNAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIG-FAEYANNFVESRVDGDLLLQLNEE------- 546 (979)
Q Consensus 475 LasSpnd~asklAaqaLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IG-L~eY~~~F~en~IDG~~LL~LTee------- 546 (979)
.. .|- .||..+ .+.+--.--+||+.+= |=+ .+=.+.+.-|.--+.+...
T Consensus 359 ~~-DP~----~FARD~----------------hd~aQG~~~d~LqRLvPlLd--S~R~EAq~i~AF~l~~EAaIKs~Q~K 415 (832)
T KOG3678|consen 359 SL-DPG----RFARDA----------------HDYAQGRGPDDLQRLVPLLD--SNRLEAQCIGAFYLCAEAAIKSLQGK 415 (832)
T ss_pred cc-Ccc----hhhhhh----------------hhhhccCChHHHHHhhhhhh--cchhhhhhhHHHHHHHHHHHHHhccc
Confidence 21 111 222211 1111112223444331 000 0001111111111111000
Q ss_pred -----------hhccccCCCChHHHHHHH-HHHHHHHhhccc------CCCCccChHHHhhhcCCCcchhHHHHHhcCCC
Q psy4858 547 -----------HLRDDIGIHNGIQRRRFE-RELQNLKKMADY------SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVD 608 (979)
Q Consensus 547 -----------DL~~dLGI~n~ghRKrLl-reI~~Lk~~~~y------ss~d~~~l~ewL~~IGpel~qYtys~l~~GvD 608 (979)
.|+ ++--..-+...+|. +++.-+-....| +......+.-|+..|| |..|--.|....||
T Consensus 416 ~kVFseIGAIQaLK-evaSS~d~vaakfAseALtviGEEVP~~l~~qVPgWt~AdVQ~WvkkIG--FeeY~EkFakQ~VD 492 (832)
T KOG3678|consen 416 TKVFSEIGAIQALK-EVASSPDEVAAKFASEALTVIGEEVPYKLAQQVPGWTCADVQYWVKKIG--FEEYVEKFAKQMVD 492 (832)
T ss_pred hhHHHHHHHHHHHH-HHhcCchHHHHHHHHHHHHHhccccChhhhccCCCcchHHHHHHHHHhC--HHHHHHHHHHHhcc
Confidence 011 11001111111221 222222111112 4445567789999999 99999999999999
Q ss_pred chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 609 KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 609 ~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
++.|-.||++||+++.|+.+++||+|.++-++.|+.-.
T Consensus 493 GDLLLqLTEndLk~DvGM~SGl~RKRFlRELqtLKv~A 530 (832)
T KOG3678|consen 493 GDLLLQLTENDLKHDVGMISGLHRKRFLRELQTLKVAA 530 (832)
T ss_pred chHHHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999887653
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.77 E-value=2.8e-08 Score=91.07 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=104.3
Q ss_pred HHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhh
Q psy4858 248 HVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326 (979)
Q Consensus 248 ~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl 326 (979)
.+++.| +..++++.. . .+.+....+..+|.+|.+++++.+..+++.|+++.|+..++.+|+.+.++|+.||.||
T Consensus 2 ~~~~~~~i~~l~~~l~----~-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLS----S-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHH----c-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 467777 899999883 2 2358888889999999999999999999999999999999999999999999999999
Q ss_pred cccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 327 Al~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
+-++ +.....+.+.|++..|..++...+..++.+|+.++.+|++
T Consensus 77 ~~~~-~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 77 AAGP-EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred ccCc-HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8765 4566778899999999999998888999999999999974
No 24
>KOG0166|consensus
Probab=98.72 E-value=1.6e-07 Score=109.57 Aligned_cols=255 Identities=20% Similarity=0.221 Sum_probs=191.0
Q ss_pred HHHHHhcCChHHHHHhhc-CCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHh
Q psy4858 206 CNTLRNCGGMDLLISNCV-EKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGIL 281 (979)
Q Consensus 206 c~~ir~~Ggld~Li~~~~-s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL 281 (979)
-..|+. |-++.|+..+. ..+..+|+.||-+|+|++. +++=..|++.| +..++.|. .+ .+.+++.-+.=+|
T Consensus 103 ~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll----~s-~~~~v~eQavWAL 176 (514)
T KOG0166|consen 103 DEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL----SS-PSADVREQAVWAL 176 (514)
T ss_pred HHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh----cC-CcHHHHHHHHHHH
Confidence 344555 88888888886 4558999999999999974 48888889999 77788888 33 3457778888899
Q ss_pred hhhhhcChhhHHHHhhcCchHHHHhhhccCCh-hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchh
Q psy4858 282 EHLFKHSEGTCSDVIGLGGLDTVLFECRKNDI-ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKY 360 (979)
Q Consensus 282 ~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~-~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~ 360 (979)
+|.=.+|..-|.-+++.|++++|+.++...+. ..+|+++-+|+||--...+.-.-.-+++ +-+-|+.|..++|..|.-
T Consensus 177 gNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~-iLp~L~~ll~~~D~~Vl~ 255 (514)
T KOG0166|consen 177 GNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP-ILPALLRLLHSTDEEVLT 255 (514)
T ss_pred hccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH-HHHHHHHHHhcCCHHHHH
Confidence 99989999999999999999999999999986 8999999999999766644433333332 344578888999999999
Q ss_pred hHHHHHHHHhcc--hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhh-----hhhhhhhcccC--------CCchhh
Q psy4858 361 YACLAIAVLVAN--TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAHAHG--------QNRNWL 425 (979)
Q Consensus 361 ~A~lAla~Lasn--~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~-----fAr~~l~~~~g--------~~~g~L 425 (979)
.||-||+.|+-. +.|++ |+.+|..+.|.+++....|.. -|-.| +..| .+.|.|
T Consensus 256 Da~WAlsyLsdg~ne~iq~----------vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN--IvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 256 DACWALSYLTDGSNEKIQM----------VIDAGVVPRLVDLLGHSSPKVVTPALRAIGN--IVTGSDEQTQVVINSGAL 323 (514)
T ss_pred HHHHHHHHHhcCChHHHHH----------HHHccchHHHHHHHcCCCcccccHHHhhccc--eeeccHHHHHHHHhcChH
Confidence 999999999844 55543 788999999999998877532 23333 2222 478899
Q ss_pred hhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCc
Q psy4858 426 QKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPN 480 (979)
Q Consensus 426 ~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpn 480 (979)
.-|.++|.....+.+.=.|++..-|-.+ -.+...+.+..+|-++.|..+..++.
T Consensus 324 ~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~e 377 (514)
T KOG0166|consen 324 PVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTAE 377 (514)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhccc
Confidence 9999999964444333333333344432 13345577788899999998887554
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.68 E-value=1.4e-07 Score=86.46 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=103.9
Q ss_pred HHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhh
Q psy4858 208 TLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHL 284 (979)
Q Consensus 208 ~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~l 284 (979)
.+++.|++..|+..+..++.+++..|+.+|.++.. ++++..+++.| ++.++++.. . ++.++.+.+.++|.||
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~----~-~~~~v~~~a~~~L~~l 76 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK----S-EDEEVVKAALWALRNL 76 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh----C-CCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999974 59999999977 999999983 3 4569999999999999
Q ss_pred hhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhc
Q psy4858 285 FKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLS 327 (979)
Q Consensus 285 fkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlA 327 (979)
-.+.++.+..+++.|.++.|+..+...+.++.++|+.+|.||+
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 6666677888999999999999999999999999999999985
No 26
>KOG1048|consensus
Probab=98.63 E-value=9.1e-07 Score=106.30 Aligned_cols=249 Identities=22% Similarity=0.186 Sum_probs=179.2
Q ss_pred HHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhh----ccchhhHHHhhc-hhHHHhhhhhccc---------------
Q psy4858 207 NTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL----TTENRDHVVENG-LDKVVRVACVCTK--------------- 266 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~----~~~Nr~~Iv~~G-l~~lv~la~~~tk--------------- 266 (979)
..+++.|||-.|+.++..++.+||.+|.++|.|+. +++|+--|.+.+ +..++++.++-.+
T Consensus 269 ~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLS 348 (717)
T KOG1048|consen 269 SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLS 348 (717)
T ss_pred HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999995 347999999886 9888888863000
Q ss_pred -----------------------------------cccccchhhhhhhHhhhhhhcChhhHHHHhh-cCchHHHHhhhcc
Q psy4858 267 -----------------------------------NINSVEHSRVGTGILEHLFKHSEGTCSDVIG-LGGLDTVLFECRK 310 (979)
Q Consensus 267 -----------------------------------~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~-~Ggl~~Ll~l~r~ 310 (979)
...+-++-+++||.|.||=+-+++.|+++=+ .|.||+|++.|+.
T Consensus 349 S~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~ 428 (717)
T KOG1048|consen 349 SNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQT 428 (717)
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHH
Confidence 0012356677788888886667777777754 5778999999880
Q ss_pred --------------------------------------------------------------------------------
Q psy4858 311 -------------------------------------------------------------------------------- 310 (979)
Q Consensus 311 -------------------------------------------------------------------------------- 310 (979)
T Consensus 429 ~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~p 508 (717)
T KOG1048|consen 429 AIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAP 508 (717)
T ss_pred HHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCC
Confidence
Q ss_pred ----------------------CChhHHHHHHHhhhhhcccCCc----hhHHHHHhcCCcchhccccccCCccchhhHHH
Q psy4858 311 ----------------------NDIETLRHCAGALANLSLYGGA----ENQEAMIKRKVPVWLFPLAFHNDDNIKYYACL 364 (979)
Q Consensus 311 ----------------------~d~~~lr~ca~ALaNlAl~~~~----~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~l 364 (979)
....|++-||+||-||++-... -.+..+-++++-..||.|....++.|.+-||.
T Consensus 509 kG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~ 588 (717)
T KOG1048|consen 509 KGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAG 588 (717)
T ss_pred CCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHH
Confidence 1235778899999999876533 33334468888899999999999999999999
Q ss_pred HHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHH
Q psy4858 365 AIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAA 444 (979)
Q Consensus 365 Ala~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAa 444 (979)
||+||+.|...+.. |.+-+-.+||+-|-.+ .| ++...|.-..++
T Consensus 589 ~LrNls~d~rnk~l---------igk~a~~~lv~~Lp~~-~~--------------------------~~~~sedtv~~v 632 (717)
T KOG1048|consen 589 ALRNLSRDIRNKEL---------IGKYAIPDLVRCLPGS-GP--------------------------STSLSEDTVRAV 632 (717)
T ss_pred HHhhhccCchhhhh---------hhcchHHHHHHhCcCC-CC--------------------------CcCchHHHHHHH
Confidence 99999999999998 6644444555443222 11 111122224455
Q ss_pred HHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCC-ccchhhhhhhhHh
Q psy4858 445 FHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP-NAVASKYAAQTLR 492 (979)
Q Consensus 445 fhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSp-nd~asklAaqaLe 492 (979)
+|-..|. +.++-.|.+...+++++++|.-+..+. +.-..+.|.+.|.
T Consensus 633 c~tl~ni-v~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~ 680 (717)
T KOG1048|consen 633 CHTLNNI-VRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLD 680 (717)
T ss_pred HHhHHHH-HHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHH
Confidence 5544444 456677888899999999998887653 2234444554443
No 27
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=98.53 E-value=8.2e-08 Score=82.47 Aligned_cols=62 Identities=31% Similarity=0.527 Sum_probs=57.5
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCc-hhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~-~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
.++..+.+||..+| +++|...|..+|||+ ..|..||+++|. .+||++..||.+|+.+|+.|+
T Consensus 4 w~~~~v~~WL~~~g--l~~y~~~f~~~~i~g~~~L~~l~~~~L~-~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 4 WSPEDVAEWLKSLG--LEQYADNFRENGIDGLEDLLQLTEEDLK-ELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp HCHHHHHHHHHHTT--CGGGHHHHHHTTCSHHHHHTTSCHHHHH-HTTTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCC--cHHHHHHHHHcCCcHHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHcC
Confidence 34567899999998 999999999999999 999999999999 699999999999999999874
No 28
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.49 E-value=2.2e-07 Score=90.40 Aligned_cols=89 Identities=29% Similarity=0.449 Sum_probs=49.8
Q ss_pred CCeeEecccCCccchHHHHHHHHHhc-------CCce-EeecccCCC---------C-cchHHHHHHHHhCCEEEEEECc
Q psy4858 658 LDVFISYRRSNGSQLASLLKVHLELR-------QFKV-FIDVERLEA---------G-KFDNNLLQSIKQARNFLLVLTP 719 (979)
Q Consensus 658 yDVFISYRR~Dg~~~As~L~e~Le~~-------G~rV-FiD~~~Ie~---------G-df~~~L~~aI~~SrvfIvVLSp 719 (979)
|+|||||+..|.......|.+.+... .+.. |.+....++ . .+...|.+.|.+|+++||++||
T Consensus 1 ~~vFIS~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig~ 80 (130)
T PF08937_consen 1 YKVFISYSHDDDDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIGP 80 (130)
T ss_dssp ----------THH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--T
T ss_pred CCccccccccCcHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 57999999999554777787777773 2221 222222221 2 3788899999999999999999
Q ss_pred ccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEec
Q psy4858 720 KALDRCMEDNESECKDWVHREIVAALQSGCNIIPILD 756 (979)
Q Consensus 720 ~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~ 756 (979)
+. ..+.||.+||..|++.+++||.|..
T Consensus 81 ~T----------~~s~wV~~EI~~A~~~~~~Ii~V~~ 107 (130)
T PF08937_consen 81 NT----------AKSKWVNWEIEYALKKGKPIIGVYL 107 (130)
T ss_dssp T--------------HHHHHHHHHHTTT---EEEEET
T ss_pred Cc----------ccCcHHHHHHHHHHHCCCCEEEEEC
Confidence 94 5689999999999999999999954
No 29
>KOG4375|consensus
Probab=98.48 E-value=7.9e-08 Score=102.87 Aligned_cols=68 Identities=28% Similarity=0.556 Sum_probs=64.8
Q ss_pred CCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 503 SQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
++.+..||..||..||+.++|.+|.+.|..+.|||.+|-.|+.+|+. ++|++-.+||.-|.++++.|.
T Consensus 204 ~Kpl~~Wsk~DV~dWLssl~L~E~~~aF~d~eIdG~hLp~l~k~df~-~LGVTRVgHRmnIerALr~ll 271 (272)
T KOG4375|consen 204 CKPLQRWSKIDVNDWLSSLHLIEYDDAFHDIEIDGKHLPLLRKLDFR-GLGVTRVGHRMNIERALRQLL 271 (272)
T ss_pred ccccceeccccHHHHHHhhhhhhcchhhhhcccccchhhhcchhhhh-cccchhhhhHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999999998 899999999999999999874
No 30
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.48 E-value=1e-06 Score=95.55 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=127.9
Q ss_pred hccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhchhHHHhhhhhccccccc
Q psy4858 192 WAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENGLDKVVRVACVCTKNINS 270 (979)
Q Consensus 192 wa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~ 270 (979)
++++.. +--...=+.||+.||++++...+..|+.++|-.|..+|.|+.. .+|+..|. ..+..|++....+. -+
T Consensus 35 ~al~n~--aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik-~~i~~Vc~~~~s~~---ln 108 (254)
T PF04826_consen 35 IALGNS--AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIK-MYIPQVCEETVSSP---LN 108 (254)
T ss_pred HHHHhh--ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHH-HHHHHHHHHHhcCC---CC
Confidence 444444 3334556789999999999999999999999999999999964 59999884 45777777654332 23
Q ss_pred cchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc
Q psy4858 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL 350 (979)
Q Consensus 271 ~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L 350 (979)
.++|..|+++|.|| +.+++...-+++ .++.++.++.+++..++.|+..+|.|||-+. ..-+.|+..+++..|+.|
T Consensus 109 s~~Q~agLrlL~nL-tv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np--~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 109 SEVQLAGLRLLTNL-TVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSENP--DMTRELLSAQVLSSFLSL 183 (254)
T ss_pred CHHHHHHHHHHHcc-CCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhccCH--HHHHHHHhccchhHHHHH
Confidence 48889999999999 988888766654 7999999999999999999999999998777 555888888999999988
Q ss_pred cccCCc-cchhhH
Q psy4858 351 AFHNDD-NIKYYA 362 (979)
Q Consensus 351 a~s~dd-~vr~~A 362 (979)
..+..+ .+-..+
T Consensus 184 f~~~~~~~~l~~~ 196 (254)
T PF04826_consen 184 FNSSESKENLLRV 196 (254)
T ss_pred HccCCccHHHHHH
Confidence 776654 334444
No 31
>KOG1899|consensus
Probab=98.40 E-value=4.2e-07 Score=105.97 Aligned_cols=132 Identities=25% Similarity=0.404 Sum_probs=105.2
Q ss_pred hHhhccCcccCcCCCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHH
Q psy4858 490 TLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQN 569 (979)
Q Consensus 490 aLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~ 569 (979)
||..++++... .....|++--|-+||..|||+||.+.|.++.|||+.|..||-+||. +|-+.+..|---|.++|+-
T Consensus 607 al~ai~~keee---~ka~klDv~wvlRWLDDIGLPQYKdqF~E~rVDgrmL~ylTvnDll-~lkVvs~lHhaSlkraIqv 682 (861)
T KOG1899|consen 607 ALRAIEEKEEE---PKANKLDVHWVLRWLDDIGLPQYKDQFAENRVDGRMLHYLTVNDLL-ELKVVSALHHASLKRAIQV 682 (861)
T ss_pred HHHHhcccccc---ccccchhHHHHHHHHHhcCChhhHHHHhhhccchhhHhhhhHhhhh-HHHHHHHHHHHHHHHHHHH
Confidence 44444444332 1357899999999999999999999999999999999999999997 7999999999999999999
Q ss_pred HHhhcc----------------cCCC------CccChHHHhhhcCCCcchhHHHHHhcCCCchhh---hccCHHHHHHHc
Q psy4858 570 LKKMAD----------------YSSK------DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSI---KALSEEQLICEC 624 (979)
Q Consensus 570 Lk~~~~----------------yss~------d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L---~~LT~edL~~~c 624 (979)
|+.... ||+. ...-+-+||..|+ |..|+.++.-+||.+-.+ ++.|.|-|...+
T Consensus 683 Lr~n~fnpncl~rr~p~de~~~~Psed~Vv~WTnhrvmeWLrsiD--LAEytpNLrgaGVhGaLmiyEPrFtaetlA~lL 760 (861)
T KOG1899|consen 683 LRKNDFNPNCLERRIPQDEVEKYPSEDVVVRWTNHRVMEWLRSID--LAEYTPNLRGAGVHGALMIYEPRFTAETLAELL 760 (861)
T ss_pred HHHhccChhhhhhcCccchhhcCCChhHHHHhhhHHHHHHHHhcc--HHHhCcccccCCCCcceEEecccccHHHHHHHH
Confidence 987552 2221 1123468999998 999999999999986655 567888877766
Q ss_pred CCC
Q psy4858 625 GIH 627 (979)
Q Consensus 625 gIt 627 (979)
.|.
T Consensus 761 niP 763 (861)
T KOG1899|consen 761 NIP 763 (861)
T ss_pred cCC
Confidence 665
No 32
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=98.37 E-value=5.3e-07 Score=77.13 Aligned_cols=61 Identities=28% Similarity=0.475 Sum_probs=54.5
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
++..+.+||..+| +++|...|..+-+|++.|..||++||.. +||++.+||.+|+.+|+.|+
T Consensus 4 ~~~~V~~WL~~~~--l~~y~~~F~~~~i~g~~L~~lt~~dL~~-lgi~~~ghr~ki~~~i~~Lk 64 (64)
T PF00536_consen 4 SVEDVSEWLKSLG--LEQYAENFEKNYIDGEDLLSLTEEDLEE-LGITKLGHRKKILRAIQKLK 64 (64)
T ss_dssp SHHHHHHHHHHTT--GGGGHHHHHHTTSSHHHHTTSCHHHHHH-TT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCC--CHHHHHHHHcCCchHHHHHhcCHHHHHH-cCCCCHHHHHHHHHHHHHhC
Confidence 4557889999998 9999999966777999999999999997 99999999999999999874
No 33
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.34 E-value=2.8e-06 Score=92.22 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=140.3
Q ss_pred HhcCChHHHHHhhcC-CChhHHhHHHHHHHHhh-ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhh
Q psy4858 210 RNCGGMDLLISNCVE-KDLDLQFSSARLLEQCL-TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFK 286 (979)
Q Consensus 210 r~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfk 286 (979)
.+.+.++.|+..+.+ .|+.+|-.|-..+.+++ .+.|++.|.+.| +..|.++. .. .+..+...++.+|.|| .
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL----~~-p~~~vr~~AL~aL~Nl-s 82 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLL----ND-PNPSVREKALNALNNL-S 82 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHc----CC-CChHHHHHHHHHHHhc-C
Confidence 456778999999995 57889999999999996 479999999999 99999999 44 4557777889999999 9
Q ss_pred cChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHH
Q psy4858 287 HSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACL 364 (979)
Q Consensus 287 HSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~l 364 (979)
-+.++..++-. -++.++.+.-+. |.+++..+.++|.|+++.. ..|..+. + .+.-|+.|..+++..+|.++..
T Consensus 83 ~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~--~~~~~l~-~-~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 83 VNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN--DYHHMLA-N-YIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred CChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc--chhhhHH-h-hHHHHHHHHHcCChHHHHHHHH
Confidence 99999887643 588888876665 7899999999999999886 4455554 3 4556889999999999999999
Q ss_pred HHHHHhcchHHHHHHHhhhhHHHHHhhCCc-cchHhhhhc
Q psy4858 365 AIAVLVANTEIEAAVLKSVQEAAVLKSGTL-DLVEPFVMS 403 (979)
Q Consensus 365 Ala~Lasn~ei~~~~~~~~~~~~V~~sG~l-~lv~~~~~~ 403 (979)
+|.||+.|+....+ +...+.+ .++..|-+.
T Consensus 157 ~L~nLS~np~~~~~---------Ll~~q~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 157 VLVNLSENPDMTRE---------LLSAQVLSSFLSLFNSS 187 (254)
T ss_pred HHHHhccCHHHHHH---------HHhccchhHHHHHHccC
Confidence 99999999999988 5555665 344444443
No 34
>KOG4199|consensus
Probab=98.30 E-value=3e-06 Score=94.22 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=140.5
Q ss_pred ccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChh-HH---hHHHHHHHHhh-ccchhhHHHhhc-hhHHHhhhhhccc
Q psy4858 193 AVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLD-LQ---FSSARLLEQCL-TTENRDHVVENG-LDKVVRVACVCTK 266 (979)
Q Consensus 193 a~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~-~q---~~aa~~Le~~~-~~~Nr~~Iv~~G-l~~lv~la~~~tk 266 (979)
++.++ ++.+.+|.+|.+.|||+.|++.+-+.+.+ .+ -.+-.+|-.++ .+.||+.||+.| +++++.++..-
T Consensus 265 tl~~l--AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-- 340 (461)
T KOG4199|consen 265 TLKAL--AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-- 340 (461)
T ss_pred HHHHH--HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc--
Confidence 45566 78999999999999999999999885543 33 22333555555 579999999998 99999999543
Q ss_pred cccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCc
Q psy4858 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKRKVP 344 (979)
Q Consensus 267 ~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~ 344 (979)
+.++.+-.-+..|+--|-=.+.+.....|+.||-+..|..++.- -.-++|.+.-++-|+++.+ .++..++=-.++
T Consensus 341 -~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs--~~~~~~~l~~Gi 417 (461)
T KOG4199|consen 341 -SDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS--AENRTILLANGI 417 (461)
T ss_pred -CCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh--hhccchHHhccH
Confidence 34455655666666666558899999999999999999999996 5789999999999999988 666666656667
Q ss_pred chhccccccCCccchhhHHHHHHHHhcchHHHHH
Q psy4858 345 VWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 345 ~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~ 378 (979)
+-|...|.+..+..+-.|--||+-|--+-+...+
T Consensus 418 E~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 418 EKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred HHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 8888888888888777777788888776655544
No 35
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=98.18 E-value=2.4e-06 Score=71.67 Aligned_cols=60 Identities=32% Similarity=0.521 Sum_probs=55.7
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhh
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l 642 (979)
+...+.+||..+| +++|...|..+|+|+..|..|++++|. ++||++.+||.+|+.+|+.+
T Consensus 3 ~~~~V~~wL~~~~--~~~y~~~f~~~~i~g~~L~~l~~~dL~-~lgi~~~g~r~~i~~~i~~l 62 (63)
T cd00166 3 SPEDVAEWLESLG--LGQYADNFRENGIDGDLLLLLTEEDLK-ELGITLPGHRKKILKAIQKL 62 (63)
T ss_pred CHHHHHHHHHHcC--hHHHHHHHHHcCCCHHHHhHCCHHHHH-HcCCCCHHHHHHHHHHHHHc
Confidence 3457889999999 899999999999999999999999999 79999999999999999876
No 36
>KOG4384|consensus
Probab=98.15 E-value=1.7e-06 Score=96.30 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=99.0
Q ss_pred HHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcccCCCCccChHHHhhhcCCC
Q psy4858 515 REWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQE 594 (979)
Q Consensus 515 a~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~yss~d~~~l~ewL~~IGpe 594 (979)
..|...|...+|...+.--+.+--....++..++. .++....+|++. ++.+.+. +...+..+.+||+.|+
T Consensus 157 ~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~-~~s~e~~~~~~p----~~~~~~~---~~~~~~~~~ewL~~i~-- 226 (361)
T KOG4384|consen 157 IKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVD-VISEEEPAPKRP----LRRLRRS---PHPHPKSLEEWLRRIG-- 226 (361)
T ss_pred hcccchhhccccCccccccccccCcccccccceec-cccccccccchh----hhhhccC---CCCCchHHHHHHHHhh--
Confidence 35666777777877777666666666688888876 689999999887 3333322 3455779999999999
Q ss_pred cchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 595 FSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 595 l~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
+..|.-.|+.+||| .+.+..+|++||. ++||.|.-||.+||.||+.++...
T Consensus 227 le~y~~~~L~nGYd~le~~k~i~e~dL~-~lgI~nP~Hr~kLL~av~~~~e~d 278 (361)
T KOG4384|consen 227 LEEYIETLLENGYDTLEDLKDITEEDLE-ELGIDNPDHRKKLLSAVELLKEID 278 (361)
T ss_pred HHHHHHHHHHcchHHHHHHHhccHHHHH-HhCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999996 9999999999999 599999999999999999988654
No 37
>KOG1170|consensus
Probab=98.15 E-value=1.7e-06 Score=103.41 Aligned_cols=70 Identities=27% Similarity=0.675 Sum_probs=66.1
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.++..|+.++|+.||+.+||++|.+.|.+|.|.|..|+.|..-||+ ++|+...||-||++.+|.+|+...
T Consensus 993 a~~~~w~seeV~awLe~~~LsEy~d~f~kndirGseLl~L~rrDLk-dlgvtkVGhvkril~aIkdl~~~~ 1062 (1099)
T KOG1170|consen 993 ANIPYWTSEEVCAWLESIGLSEYKDTFRKNDIRGSELLHLERRDLK-DLGVTKVGHVKRILSAIKDLRAQN 1062 (1099)
T ss_pred ccCccccHHHHHHHHhccccchhhhhhhccCcccceeeecCccccc-ccchhhhHHHHHHHHHHHHHHhcc
Confidence 3788999999999999999999999999999999999999999998 899999999999999999996543
No 38
>smart00454 SAM Sterile alpha motif. Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.
Probab=98.09 E-value=5.4e-06 Score=70.07 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=55.9
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccC-HHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALS-EEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT-~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
.+...+.+||..+| +++|...|..+|+|+..+..++ +++|. ++||++.+||.+|+.+|+.++.
T Consensus 4 w~~~~v~~wL~~~g--~~~y~~~f~~~~i~g~~ll~~~~~~~l~-~lgi~~~~~r~~ll~~i~~l~~ 67 (68)
T smart00454 4 WSPESVADWLESIG--LEQYADNFRKNGIDGALLLLLTSEEDLK-ELGITKLGHRKKILKAIQKLKD 67 (68)
T ss_pred CCHHHHHHHHHHCC--hHHHHHHHHHCCCCHHHHHhcChHHHHH-HcCCCcHHHHHHHHHHHHHHHh
Confidence 44567889999999 9999999999999999999999 66665 6999999999999999998763
No 39
>KOG4384|consensus
Probab=97.99 E-value=6.4e-06 Score=91.82 Aligned_cols=65 Identities=29% Similarity=0.559 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 509 WSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 509 WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
--..-|++||+.|||++|.+.|++|++| =+.+-.++++||. +|||.++.||++|+.+++.|+...
T Consensus 213 ~~~~~~~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~-~lgI~nP~Hr~kLL~av~~~~e~d 278 (361)
T KOG4384|consen 213 PHPKSLEEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLE-ELGIDNPDHRKKLLSAVELLKEID 278 (361)
T ss_pred CCchHHHHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHH-HhCCCCHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999999999 6777799999998 899999999999999999999765
No 40
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.93 E-value=4.3e-05 Score=75.37 Aligned_cols=114 Identities=20% Similarity=0.287 Sum_probs=76.4
Q ss_pred CCeeEecccCCc--cchHHHHHHHHHhc-CCceEeecccCCC--C-cchHHHHHHHHhCCEEEEEECcccchhhccc---
Q psy4858 658 LDVFISYRRSNG--SQLASLLKVHLELR-QFKVFIDVERLEA--G-KFDNNLLQSIKQARNFLLVLTPKALDRCMED--- 728 (979)
Q Consensus 658 yDVFISYRR~Dg--~~~As~L~e~Le~~-G~rVFiD~~~Ie~--G-df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~--- 728 (979)
+.|||||+.++. .+.+..|.+.|+.. |+.|.+|...... + ++...+.+.+++++.+|+|+||.+...+...
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~~~~~~~~~~ 80 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYKERYDKKADE 80 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchhHHHHHhhcc
Confidence 469999999663 34577899999999 9999999988743 4 5888899999999999999997665332111
Q ss_pred C---C--CcCChhHHHHHHHH------HhcCCeEEEEecCCCCCCCCCChHHHHHH
Q psy4858 729 N---E--SECKDWVHREIVAA------LQSGCNIIPILDNFAWPDPEQLPADMRAI 773 (979)
Q Consensus 729 ~---i--~~~SdWV~rEL~~A------l~~~k~IIPVl~~f~~pd~e~LPedLr~l 773 (979)
+ . ....+....-+..+ -.+..+.|||+.+ ..+.+++|+.|+..
T Consensus 81 ~~~~~~~~~~~d~f~~~l~~~l~~~~~~~~~~kfi~v~f~--~~~~~~iP~~l~~~ 134 (150)
T PF08357_consen 81 REGGVGTEPQGDLFIAALNLILRDFYQGENNKKFIPVYFD--YSDEEDIPEPLRGL 134 (150)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHhccccccceeEEEeC--CCCcccCCHHHhcC
Confidence 1 1 11112222222222 2234678999543 24556788888763
No 41
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.85 E-value=2.7e-05 Score=86.91 Aligned_cols=251 Identities=22% Similarity=0.254 Sum_probs=176.4
Q ss_pred HHHHhcCChHHHHHhhcC-CChhHHhHHHHHHHHhhc-cchhhHH-Hhhc-hhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 207 NTLRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLT-TENRDHV-VENG-LDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~~-~~Nr~~I-v~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
+-..+.|-.+-++..|.+ ...-+||.||-.|+|+.. +.+.++| |..| .+.++.|.....+..+ +++- =+|.
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~--eQav---WALG 182 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVR--EQAV---WALG 182 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHH--HHHH---HHhc
Confidence 345678888889999954 445599999999999985 4666665 5678 8888888854433322 3333 4889
Q ss_pred hhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchh
Q psy4858 283 HLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKY 360 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~ 360 (979)
|.--.|+.-|.-+...|++++||.++.++ +..++|.++--|+||----.+ --.+-.=..+.+-|+.|-.+-|+.+-.
T Consensus 183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP-~P~w~~isqalpiL~KLiys~D~evlv 261 (526)
T COG5064 183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP-PPDWSNISQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC-CCchHHHHHHHHHHHHHHhhcCHHHHH
Confidence 99777888888889999999999999988 459999999999999432211 113333345567799999999999999
Q ss_pred hHHHHHHHHhcc--hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCC-----hhhhhhhhhhc---cc---CCCchhhhh
Q psy4858 361 YACLAIAVLVAN--TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHS-----PSEFAKSNLAH---AH---GQNRNWLQK 427 (979)
Q Consensus 361 ~A~lAla~Lasn--~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~-----P~~fAr~~l~~---~~---g~~~g~L~~ 427 (979)
-||-||.-|.-- +.++ + |...|++..+.++++.-+ |+.-+-.|... .| .+..|+|..
T Consensus 262 DA~WAiSYlsDg~~E~i~-a---------vld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 262 DACWAISYLSDGPNEKIQ-A---------VLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred HHHHHHHHhccCcHHHHH-H---------HHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 999999988643 3333 2 889999988888877622 21111111110 11 258889999
Q ss_pred hhhccccchHHHHHHHHHHhhHHhhhhhhcCCc---hhhhhhCccchhhhhhcC
Q psy4858 428 LVPVLSSKREEARNLAAFHFCMEAGIKKQQGKT---DIFKEIGAIEPLKKVASC 478 (979)
Q Consensus 428 LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~---~~F~eiGaIe~LkrLasS 478 (979)
+.+||++..+..+--|-++. -|-.+ +|+ ++..+.+-|++|..+.++
T Consensus 332 ~~~lLs~~ke~irKEaCWTi-SNITA----Gnteqiqavid~nliPpLi~lls~ 380 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTI-SNITA----GNTEQIQAVIDANLIPPLIHLLSS 380 (526)
T ss_pred HHHHhcChhhhhhhhhheee-ccccc----CCHHHHHHHHhcccchHHHHHHHH
Confidence 99999997766655555544 23322 554 456777889999887653
No 42
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=2.6e-05 Score=61.53 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=38.5
Q ss_pred ChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhc
Q psy4858 288 SEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLS 327 (979)
Q Consensus 288 Se~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlA 327 (979)
|+++++.|++.||++.|+.++++.|++++++|+.||.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999996
No 43
>KOG2160|consensus
Probab=97.71 E-value=0.0017 Score=73.40 Aligned_cols=232 Identities=16% Similarity=0.179 Sum_probs=170.6
Q ss_pred CChhhHHHHHHHHHhhHHHHHhhhhhhHHHHhhhhhHHHHHHHhHHHHHhhhccCchhccchhHHHHHHHHHHHHhhccC
Q psy4858 116 VSQQNIDAIIAKYTGCLENIVQDSVKLFAIKVFSMKEVFILRSFILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVP 195 (979)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Awa~p 195 (979)
..++....+...|..-+.++|+. -|+.++..-.|... .+... ...-...-.+|+.+-.+|+..-
T Consensus 52 e~~k~~~e~~~~~~e~~k~~~~~------~~~~~~~~~~~~~~------~~~~~-s~~le~ke~ald~Le~lve~iD--- 115 (342)
T KOG2160|consen 52 EDRKWLQELMQAHTEDQKDFVED------MKVISDVMSMIPIV------ILNSS-SVDLEDKEDALDNLEELVEDID--- 115 (342)
T ss_pred cchHHHHHHHHHhhhhhhhhccc------chhHHHHHHhhhhh------ccCcc-cCCHHHHHHHHHHHHHHHHhhh---
Confidence 45788888899999888888888 11111111111111 11111 1222345566777776665432
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccc
Q psy4858 196 THGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVE 272 (979)
Q Consensus 196 ~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~ 272 (979)
..+-|...||+.+|+..+.+++.+++-.||++|+.|.. +.--..|-+.| |.+|+... ....+..
T Consensus 116 ---------nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l----s~~~~~~ 182 (342)
T KOG2160|consen 116 ---------NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL----SSDDPNT 182 (342)
T ss_pred ---------hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH----ccCCCch
Confidence 34567788999999999999999999999999999985 35566777777 99998888 3324455
Q ss_pred hhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc
Q psy4858 273 HSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL 350 (979)
Q Consensus 273 ~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L 350 (979)
.-..+.+++-+|-.|-.....+.-..+|..+|.-.+.++ ++-.+|.++.=+++|.. +....+..+...+.+..+..+
T Consensus 183 ~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~-~~~s~~d~~~~~~f~~~~~~l 261 (342)
T KOG2160|consen 183 VRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ-EDKSDEDIASSLGFQRVLENL 261 (342)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-hhhhhhhHHHHhhhhHHHHHH
Confidence 667889999999999999999999999999999999994 67788888888888833 334445566788889999999
Q ss_pred cccCCccchhhHHHHHHHHhcchHHHH
Q psy4858 351 AFHNDDNIKYYACLAIAVLVANTEIEA 377 (979)
Q Consensus 351 a~s~dd~vr~~A~lAla~Lasn~ei~~ 377 (979)
.++.+..+++.|..|+..+....-.+.
T Consensus 262 ~~~l~~~~~e~~l~~~l~~l~~~~~~~ 288 (342)
T KOG2160|consen 262 ISSLDFEVNEAALTALLSLLSELSTRK 288 (342)
T ss_pred hhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 999999999998877777666544444
No 44
>KOG4199|consensus
Probab=97.64 E-value=0.00033 Score=78.48 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=149.7
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCC-hhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKD-LDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGT 278 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~-~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~ 278 (979)
+++-..+|.+.||+--|+..++..- +..=.+.-..|.-+++ +|-...|++.| |+.|+++.-.|...+. -...|-..
T Consensus 230 ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~-r~l~k~~l 308 (461)
T KOG4199|consen 230 AHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGN-RTLAKTCL 308 (461)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhH-HHHHHHHH
Confidence 3445567888999999999988753 3344444456666754 68899999998 9999999977666543 14888999
Q ss_pred hHhhhhhhcChhhHHHHhhcCchHHHHhhhcc--CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccccc-CC
Q psy4858 279 GILEHLFKHSEGTCSDVIGLGGLDTVLFECRK--NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH-ND 355 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~--~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s-~d 355 (979)
+.|..| .-+|.+.+.||+.||+|.++.+.-+ .||.+......++.-|++-. +.+-..+++-|+...-+..|.- +-
T Consensus 309 slLral-AG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP~ 386 (461)
T KOG4199|consen 309 SLLRAL-AGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAHPV 386 (461)
T ss_pred HHHHHH-hCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhCcH
Confidence 999999 9999999999999999999988765 47999999888999988765 4444778999999888887763 22
Q ss_pred -ccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCC
Q psy4858 356 -DNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHS 405 (979)
Q Consensus 356 -d~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~ 405 (979)
..+|-+||-+|+|+++-..-...| +...|.-+|++.--..|.
T Consensus 387 ~a~vQrnac~~IRNiv~rs~~~~~~--------~l~~GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 387 AAQVQRNACNMIRNIVVRSAENRTI--------LLANGIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccch--------HHhccHHHHHHHHHhcCc
Confidence 278999999999999985555553 677777666666555554
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.56 E-value=0.00069 Score=80.20 Aligned_cols=204 Identities=18% Similarity=0.159 Sum_probs=147.5
Q ss_pred HHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhh
Q psy4858 218 LISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIG 297 (979)
Q Consensus 218 Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~ 297 (979)
|...+.+.+.++--.+..+|+.|+.+..-+.+.......|.+.. .. .+..+.+.+.-.|.++..|+++-..-+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL----~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGL----TH-PSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 44555555666556666889999877655555444344444444 44 44588888888899998999998999999
Q ss_pred cCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHH
Q psy4858 298 LGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEA 377 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~ 377 (979)
.+-++.|+..++..|..+-..|+.+|.+|+-+. ..-+.+...+...-|..++.+.++.+|+.+.=.+..+++-.+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~--~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHP--EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc--hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999998765 333557788889999999998788676666556777776655554
Q ss_pred HHHhhhhHHHHHhhCCccchHhhhhcCChh----------hhhhhhhhcccCCCchhhhhhhhccccch
Q psy4858 378 AVLKSVQEAAVLKSGTLDLVEPFVMSHSPS----------EFAKSNLAHAHGQNRNWLQKLVPVLSSKR 436 (979)
Q Consensus 378 ~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~----------~fAr~~l~~~~g~~~g~L~~LvplL~s~~ 436 (979)
++ +..+|.++.+...+.+-+.. ++|..+....+-...|.++.|+.+|....
T Consensus 196 ~~--------~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 196 EA--------VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HH--------HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 43 88899998888777774443 12221111111146679999999887743
No 46
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.36 E-value=0.0012 Score=73.33 Aligned_cols=177 Identities=14% Similarity=0.080 Sum_probs=131.3
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT 291 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t 291 (979)
-..+|++.+..+|.-++..|+++|+.++.. ..+..-...+ |..+++..+.-..+ ++.+.+..+...|.+| -..++.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~-~~~~~~~~av~~L~~L-L~~~~~ 183 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSS-SDSELQYIAVQCLQNL-LRSKEY 183 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-H-HHH---HHHHHHHHHH-HTSHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHH-hCcchh
Confidence 589999999999999999999999999854 3333332345 89999998763333 4456778889999999 689999
Q ss_pred HHHHhhcCchHHHHhhh------cc-CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCC-ccchhhHH
Q psy4858 292 CSDVIGLGGLDTVLFEC------RK-NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHND-DNIKYYAC 363 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~------r~-~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~d-d~vr~~A~ 363 (979)
|...++.||++.|+..+ .+ .+..++|++..++=-|+.++ ..-..|.+++++.-|+.++.... ++|-=.+.
T Consensus 184 R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~--~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 184 RQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEP--EIAEELNKKYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSH--HHHHHHHTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCH--HHHHHHhccchHHHHHHHHHhcccchHHHHHH
Confidence 99999999999999999 23 37899999999999999988 55578999999999998887554 35544455
Q ss_pred HHHHHHhcchH--HHHHHHhhhhHHHHHhhCCccchHhhhhc
Q psy4858 364 LAIAVLVANTE--IEAAVLKSVQEAAVLKSGTLDLVEPFVMS 403 (979)
Q Consensus 364 lAla~Lasn~e--i~~~~~~~~~~~~V~~sG~l~lv~~~~~~ 403 (979)
.++.||+.... +-.. |+.+|.++.++.+...
T Consensus 262 a~l~Nl~~~~~~~~~~~---------mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 262 AILRNLLSKAPKSNIEL---------MVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHTTSSSSTTHHHH---------HHHH-HHHHHHHHHSS
T ss_pred HHHHHHHhccHHHHHHH---------HHHccHHHHHHHHhcC
Confidence 68999999866 6666 8888888877666543
No 47
>KOG1048|consensus
Probab=97.34 E-value=0.0011 Score=80.53 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhchhHHHhhhhhccc-cccccchhhhhh
Q psy4858 201 IGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENGLDKVVRVACVCTK-NINSVEHSRVGT 278 (979)
Q Consensus 201 ~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~Gl~~lv~la~~~tk-~~~~~~~~r~~~ 278 (979)
..+-.|+.++++-|+++|++++..+|..|-+.+|.+|-|+..+ .||+.|.+.++..||+...-+.- ..-+-|..+...
T Consensus 554 ~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc 633 (717)
T KOG1048|consen 554 SEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVC 633 (717)
T ss_pred hhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHH
Confidence 3445556669999999999999999999999999999999755 99999998889999998855433 112348899999
Q ss_pred hHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhh
Q psy4858 279 GILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-DIETLRHCAGALANL 326 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNl 326 (979)
.+|-||...+-++-.++-+.||++.|+.++++. ++...+.|..-|.+|
T Consensus 634 ~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 634 HTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred HhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 999999889999999999999999999999998 579999999999998
No 48
>KOG4374|consensus
Probab=97.13 E-value=0.0002 Score=75.80 Aligned_cols=62 Identities=31% Similarity=0.390 Sum_probs=58.9
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.++|-.||+..||+.|...|..+.||-+.|..||++||+ ++||...|.|+|+.++|..++..
T Consensus 151 ~~~vl~~L~~lglg~y~~~f~~~evd~~~l~~lte~dlk-~~gi~~~GpRkKi~~A~~~~r~~ 212 (216)
T KOG4374|consen 151 TEGVLMELGILGLGAYWKMFEAIEVDMDNLRLLTEEDLK-DMGINSVGPRKKILCAIGKLRRS 212 (216)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccchhh-hhcccccCcchhhhhhhhccccc
Confidence 689999999999999999999999999999999999998 79999999999999999987754
No 49
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.09 E-value=0.0037 Score=74.11 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=124.7
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTG 279 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~g 279 (979)
..+.+..+.+.+-+..++..+..+|.++.-.|+++|..+.. .++-+-|...+ +..|.++...+ ++ .+-.....
T Consensus 108 ~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~----~~-~vR~Rv~e 182 (503)
T PF10508_consen 108 SEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQS----SD-IVRCRVYE 182 (503)
T ss_pred CHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhcc----CH-HHHHHHHH
Confidence 35578888889999999999999999999999999999974 57777777777 78888888332 22 22234577
Q ss_pred HhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCc
Q psy4858 280 ILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD 356 (979)
Q Consensus 280 iL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd 356 (979)
++-++++||++....+++.|-++.++..+...|..++--|..-|..||- .+.+-..|.+.|++.-|..+....+.
T Consensus 183 l~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~--~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 183 LLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE--TPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--ChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999998 44666888999999999999876554
No 50
>PRK09687 putative lyase; Provisional
Probab=96.90 E-value=0.0056 Score=67.60 Aligned_cols=132 Identities=14% Similarity=0.044 Sum_probs=64.9
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
-+++++++|.+++..++..|+..|.++-.+..- -..-+..|..++ ..-++.++.+.+.++|.++ ...+. .
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L~~l~----~~D~d~~VR~~A~~aLG~~-~~~~~--~ 124 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNILNNLA----LEDKSACVRASAINATGHR-CKKNP--L 124 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHHHHHH----hcCCCHHHHHHHHHHHhcc-ccccc--c
Confidence 345566666666666666666666665322110 001134444443 1224445666666666665 21110 0
Q ss_pred HHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 294 DVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 294 ~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
. ..-.+..+...+...++.|.+.++.||.++ .+ +.++.-|..+....+..||..|+.||..+
T Consensus 125 ~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~------~~------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 125 Y--SPKIVEQSQITAFDKSTNVRFAVAFALSVI------ND------EAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred c--chHHHHHHHHHhhCCCHHHHHHHHHHHhcc------CC------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 0 111233444444555666666666666544 11 11345555666655556666666666665
No 51
>PRK09687 putative lyase; Provisional
Probab=96.86 E-value=0.012 Score=65.17 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=79.9
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~ 294 (979)
++.|+..+..++..++..|++.|.++=..+ -+..+.++. ++ .+..+-+.+..+|..| .+.+....+
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~--------~~~~l~~ll----~~-~d~~vR~~A~~aLg~l-g~~~~~~~~ 90 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGGQD--------VFRLAIELC----SS-KNPIERDIGADILSQL-GMAKRCQDN 90 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCcch--------HHHHHHHHH----hC-CCHHHHHHHHHHHHhc-CCCccchHH
Confidence 567777788888888888888887663111 134444543 33 3457777777788887 765543333
Q ss_pred HhhcCchHHHHhh-hccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHh
Q psy4858 295 VIGLGGLDTVLFE-CRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV 370 (979)
Q Consensus 295 lV~~Ggl~~Ll~l-~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~La 370 (979)
.+. .|..+ +...|+.|.+.|+.||.++.-.+... .+.++.-|..++.+.+..||+.|+.||+.+-
T Consensus 91 a~~-----~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~ 156 (280)
T PRK09687 91 VFN-----ILNNLALEDKSACVRASAINATGHRCKKNPLY------SPKIVEQSQITAFDKSTNVRFAVAFALSVIN 156 (280)
T ss_pred HHH-----HHHHHHhcCCCHHHHHHHHHHHhccccccccc------chHHHHHHHHHhhCCCHHHHHHHHHHHhccC
Confidence 332 44444 56667888888888888873222100 1223344556666667788888877776654
No 52
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.85 E-value=0.0015 Score=50.22 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=36.6
Q ss_pred hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhc
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLS 327 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlA 327 (979)
++++..+++.|+++.|+.++.++|++++++|+.||.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 458889999999999999999999999999999999996
No 53
>KOG2122|consensus
Probab=96.77 E-value=0.0049 Score=78.65 Aligned_cols=210 Identities=19% Similarity=0.235 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHHh-----------------------cCChHHHHHhhcCCChhHHhHHHHHH
Q psy4858 181 LDKVNDLMQKAWAVPTHGHEIGYSLCNTLRN-----------------------CGGMDLLISNCVEKDLDLQFSSARLL 237 (979)
Q Consensus 181 ~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~-----------------------~Ggld~Li~~~~s~~~~~q~~aa~~L 237 (979)
|..|.+||..-.++- |-+-+...|++||. .|-|+.|+.++.+.-++++.--|.+|
T Consensus 341 LqAIaeLl~vDh~mh--gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvL 418 (2195)
T KOG2122|consen 341 LQAIAELLQVDHEMH--GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVL 418 (2195)
T ss_pred HHHHHHHHHHHHHhc--CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 444445555544443 33667899999997 55677899999998877666666999
Q ss_pred HHhh--ccchhhHHHhh-c-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhh-cCchHHHHhhhc---
Q psy4858 238 EQCL--TTENRDHVVEN-G-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIG-LGGLDTVLFECR--- 309 (979)
Q Consensus 238 e~~~--~~~Nr~~Iv~~-G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~-~Ggl~~Ll~l~r--- 309 (979)
-||- -+-|-.+|.+. | ...|+..|..-+++ ......+++|=||=.|+-||-.+|-. -|+|..||..|.
T Consensus 419 RNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kE----sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~ 494 (2195)
T KOG2122|consen 419 RNLSWRADSNMKKVLRETGSVTALAACALRNKKE----STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEG 494 (2195)
T ss_pred HhccccccccHHHHHHhhhhHHHHHHHHHHhccc----chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccC
Confidence 9993 36777777776 6 77777777655554 45667789999999999999998866 477888887765
Q ss_pred -cCChhHHHHHHHhhhhhccc-CCchhH-HHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc-hHHHHHHHhhhhH
Q psy4858 310 -KNDIETLRHCAGALANLSLY-GGAENQ-EAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN-TEIEAAVLKSVQE 385 (979)
Q Consensus 310 -~~d~~~lr~ca~ALaNlAl~-~~~~~q-~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn-~ei~~~~~~~~~~ 385 (979)
+.+..+.+-+.+-|-|.+=| +..+-+ ..+-+..+.+-|....-|.+-.|--.||++|.||.+- .+.|..
T Consensus 495 qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~------- 567 (2195)
T KOG2122|consen 495 QSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQM------- 567 (2195)
T ss_pred CcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHH-------
Confidence 44566666666666664211 112333 3446888999999999999999999999999999765 999999
Q ss_pred HHHHhhCCccchHhhhhcCC
Q psy4858 386 AAVLKSGTLDLVEPFVMSHS 405 (979)
Q Consensus 386 ~~V~~sG~l~lv~~~~~~~~ 405 (979)
+...|+...+.-++.+-+
T Consensus 568 --LwD~gAv~mLrnLIhSKh 585 (2195)
T KOG2122|consen 568 --LWDDGAVPMLRNLIHSKH 585 (2195)
T ss_pred --HHhcccHHHHHHHHhhhh
Confidence 889999987766665533
No 54
>KOG4500|consensus
Probab=96.64 E-value=0.014 Score=67.58 Aligned_cols=281 Identities=15% Similarity=0.112 Sum_probs=167.3
Q ss_pred HhcCChHHHHHhhcCCChhHHhHHHHHHHHh--hccchhhHHHhhc-hhHHHhhhhhccc-c-ccccchhhhhhhHhhhh
Q psy4858 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQC--LTTENRDHVVENG-LDKVVRVACVCTK-N-INSVEHSRVGTGILEHL 284 (979)
Q Consensus 210 r~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~--~~~~Nr~~Iv~~G-l~~lv~la~~~tk-~-~~~~~~~r~~~giL~~l 284 (979)
++.|.+++|.+...||+.++--++.|.|+|+ ...|||+-|-+-| =..|+++....+. . -..-+...+..|.|-|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 6678899999999999999999999999998 4569999999997 4444454433221 1 12237889999999999
Q ss_pred hhcChhhHHHHhhcCchHHH--HhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcc-ccccCCccchhh
Q psy4858 285 FKHSEGTCSDVIGLGGLDTV--LFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFP-LAFHNDDNIKYY 361 (979)
Q Consensus 285 fkHSe~t~~~lV~~Ggl~~L--l~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~-La~s~dd~vr~~ 361 (979)
--.+++-+.++++.|.++.| ++|.-.++.++-+-|-.+.-|++=..+.--...--.-..+.-|+. |+.+..+.++.-
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM 243 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM 243 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence 99999999999999999955 567777899999999999999854432100000001111111111 222223333321
Q ss_pred HHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcC-------Chh-hhh-hhhhh--cccC--------CCc
Q psy4858 362 ACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSH-------SPS-EFA-KSNLA--HAHG--------QNR 422 (979)
Q Consensus 362 A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~-------~P~-~fA-r~~l~--~~~g--------~~~ 422 (979)
-.--++-+|-|.++..- .++.|.+.-+-.+++.+ +.. .|- .+.+. ...| .+.
T Consensus 244 ~feila~~aend~Vkl~---------la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p 314 (604)
T KOG4500|consen 244 IFEILAKAAENDLVKLS---------LAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADP 314 (604)
T ss_pred HHHHHHHHhcCcceeee---------hhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence 11235666677766666 66666543222233321 111 111 11111 1122 233
Q ss_pred hhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcC----Cccchhhh-hhhhHhhccCc
Q psy4858 423 NWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASC----PNAVASKY-AAQTLRLIGET 497 (979)
Q Consensus 423 g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasS----pnd~askl-AaqaLe~~gEe 497 (979)
-+|++++.|+.|+..--+..++.... |-+ ....+---|.+-|-+.+|-.+..- -.++..-. .-.||+-.--+
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~Laig-Nfa--R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIG-NFA--RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHH-hhh--ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 39999999999976555555555432 232 122233446666777777555431 12222222 44567766666
Q ss_pred ccCcC
Q psy4858 498 VPHKL 502 (979)
Q Consensus 498 vp~kl 502 (979)
+|++.
T Consensus 392 v~nka 396 (604)
T KOG4500|consen 392 VSNKA 396 (604)
T ss_pred CCchh
Confidence 66544
No 55
>KOG4403|consensus
Probab=96.64 E-value=0.0017 Score=74.23 Aligned_cols=60 Identities=25% Similarity=0.594 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHH-cCchHHHHHHHhcCCChhHHhcCCh---hhhccccCCCChHHHHHHH
Q psy4858 505 QVPLWSTEDVREWVRQ-IGFAEYANNFVESRVDGDLLLQLNE---EHLRDDIGIHNGIQRRRFE 564 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~-IGL~eY~~~F~en~IDG~~LL~LTe---eDL~~dLGI~n~ghRKrLl 564 (979)
.|..||.|++.+||-. ..|++|++.|+.+.|+|..|.++-- +++-..|||++..||+||.
T Consensus 131 ev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKlq 194 (575)
T KOG4403|consen 131 EVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKLQ 194 (575)
T ss_pred hhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhhh
Confidence 6789999999999985 4899999999999999999987643 4567789999999999975
No 56
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=96.55 E-value=0.003 Score=56.84 Aligned_cols=68 Identities=19% Similarity=0.406 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHH-HcCchH---HHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 505 QVPLWSTEDVREWVR-QIGFAE---YANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~-~IGL~e---Y~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
++..||+++|..|+. .+|+.+ ++.+|++|.|+|+.|..||-+|=+ ++-=.+...--||--.|+.|...
T Consensus 2 ~~~~Wsv~eVv~WC~~~L~l~~~d~l~~~l~en~I~Gd~L~eLtl~DCK-eLc~~d~~~Aik~Ki~iNkL~dt 73 (75)
T PF09235_consen 2 DFSNWSVDEVVSWCISSLELDDEDPLCNNLRENDITGDVLPELTLEDCK-ELCDNDLKLAIKLKILINKLRDT 73 (75)
T ss_dssp -TTT--HHHHHHHHHHHHSS-TTSCHHHHHHHTT--CCCHHHHHHHHHH-HCTTS-HHHHHHHHHHHHHHHH-
T ss_pred ccccccHHHHHHHHHHhcCCCCCCHHHHHHHHccCccchhhhccHHHHH-HHcCccHHHHHHHHHHHHhhhhc
Confidence 467899999999998 458754 788899999999999999999855 56445555566777788877653
No 57
>KOG4375|consensus
Probab=96.04 E-value=0.0055 Score=66.63 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=56.3
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
...++.+||+++. |..|+..|+.+-||+..|+.|+.+|+.. +|+|..+||.-|=+|+|.|.
T Consensus 211 sk~DV~dWLssl~--L~E~~~aF~d~eIdG~hLp~l~k~df~~-LGVTRVgHRmnIerALr~ll 271 (272)
T KOG4375|consen 211 SKIDVNDWLSSLH--LIEYDDAFHDIEIDGKHLPLLRKLDFRG-LGVTRVGHRMNIERALRQLL 271 (272)
T ss_pred ccccHHHHHHhhh--hhhcchhhhhcccccchhhhcchhhhhc-ccchhhhhHHHHHHHHHHhh
Confidence 3457899999998 9999999999999999999999999995 99999999999999999763
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.99 E-value=0.013 Score=65.11 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=114.4
Q ss_pred HhHHHHHHHHhhccchhhHHHhhc---hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcC------c
Q psy4858 230 QFSSARLLEQCLTTENRDHVVENG---LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLG------G 300 (979)
Q Consensus 230 q~~aa~~Le~~~~~~Nr~~Iv~~G---l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~G------g 300 (979)
.+.-.+-++.....+.++.|...| ...+++|..+. + .+.+.-+...-.+..|+....+.+.-+.... -
T Consensus 30 ~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~--~-~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~ 106 (312)
T PF03224_consen 30 DLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL--S-SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDP 106 (312)
T ss_dssp HHHHHHHHHHHHH-------------------HHHHHH------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc--c-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchh
Confidence 334444555555334334444444 35666777554 1 2237888888888888777775555444422 4
Q ss_pred hHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHH---HHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHH
Q psy4858 301 LDTVLFECRKNDIETLRHCAGALANLSLYGGAENQE---AMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEA 377 (979)
Q Consensus 301 l~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~---~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~ 377 (979)
..+++.++.++|.-+...|+..|++|+.++...... ..+ +....||-....+.+..+++.|+-++++|+..++++.
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l-~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL-PKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH-HHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 788999999999999999999999999999776555 333 4455566565555666788999999999999999999
Q ss_pred HHHhhhhHHHHHhhCCccchHhhh------hcCChhhh----hhhhhhcc-------cCCCchhhhhhhhcccc-chHHH
Q psy4858 378 AVLKSVQEAAVLKSGTLDLVEPFV------MSHSPSEF----AKSNLAHA-------HGQNRNWLQKLVPVLSS-KREEA 439 (979)
Q Consensus 378 ~~~~~~~~~~V~~sG~l~lv~~~~------~~~~P~~f----Ar~~l~~~-------~g~~~g~L~~LvplL~s-~~eE~ 439 (979)
. +.+.|+++.+..++ .+....++ ..+..-.+ .-...+....|+.++.. ..|+.
T Consensus 186 ~---------f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 186 V---------FWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKV 256 (312)
T ss_dssp H---------HHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHH
T ss_pred H---------HHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchH
Confidence 9 77788888777777 22222211 11111111 11223377777777777 55666
Q ss_pred HHHHHHHh
Q psy4858 440 RNLAAFHF 447 (979)
Q Consensus 440 q~lAafhl 447 (979)
--++...|
T Consensus 257 vRv~la~l 264 (312)
T PF03224_consen 257 VRVSLAIL 264 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54444443
No 59
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=95.98 E-value=0.011 Score=46.74 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhh
Q psy4858 203 YSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL 241 (979)
Q Consensus 203 ~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~ 241 (979)
...+..|++.||+.+|++++.+++.++|.+|+.+|.||.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999999985
No 60
>KOG2122|consensus
Probab=95.96 E-value=0.048 Score=70.27 Aligned_cols=217 Identities=20% Similarity=0.242 Sum_probs=145.8
Q ss_pred HhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCC---hhHHHHHHHhhhhhcccCCchh
Q psy4858 258 VRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKND---IETLRHCAGALANLSLYGGAEN 334 (979)
Q Consensus 258 v~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d---~~~lr~ca~ALaNlAl~~~~~~ 334 (979)
+.|-.-++..+. |++|. |.-| .-+.+.|.-+.+.|-|+-|+..+--.| -+.+++|-.||.||--..-..+
T Consensus 201 sllsml~t~D~e--e~ar~----fLem-Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLLSMLGTDDEE--EMART----FLEM-SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHhhhcccCCHH--HHHHH----HHHh-ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 444444555533 88887 6668 899999999999999999999998874 5788999999999944432222
Q ss_pred HHHHHhcCC--------------cchhc----cccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccc
Q psy4858 335 QEAMIKRKV--------------PVWLF----PLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDL 396 (979)
Q Consensus 335 q~~mi~~~~--------------~~wL~----~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~l 396 (979)
+.--+.|| ..||- ..|.-.+.-.=|.|.-+|+-|.+|+|++.+ +..-|++.-
T Consensus 274 -r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~a---------M~ELG~LqA 343 (2195)
T KOG2122|consen 274 -RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHA---------MNELGGLQA 343 (2195)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHH---------HHHhhhHHH
Confidence 11111121 22221 122222223345777788889999999999 888888865
Q ss_pred hHhhhhc-CC---h-----hhh--------hhhhhhcccC---------CCchhhhhhhhccccchHHHHHHHHHHhhHH
Q psy4858 397 VEPFVMS-HS---P-----SEF--------AKSNLAHAHG---------QNRNWLQKLVPVLSSKREEARNLAAFHFCME 450 (979)
Q Consensus 397 v~~~~~~-~~---P-----~~f--------Ar~~l~~~~g---------~~~g~L~~LvplL~s~~eE~q~lAafhl~~e 450 (979)
|.+++.- |. | .-. |..||. +| --+||++-+|--|.+..++.+-+-|.-+ +|
T Consensus 344 IaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvL-RN 420 (2195)
T KOG2122|consen 344 IAELLQVDHEMHGPETNDGECNALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVL-RN 420 (2195)
T ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHH-Hh
Confidence 5444432 22 2 111 233332 33 2567999999999998877766666665 78
Q ss_pred hhhhhhcCCchhhhhhCccchhhhhhc-CCccchhhhhhhhHhhc
Q psy4858 451 AGIKKQQGKTDIFKEIGAIEPLKKVAS-CPNAVASKYAAQTLRLI 494 (979)
Q Consensus 451 a~iKk~q~n~~~F~eiGaIe~LkrLas-Spnd~asklAaqaLe~~ 494 (979)
+.-+-+-++++++.++|-|..|.+++. .-.+.+.+-.-.||..+
T Consensus 421 LSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 421 LSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred ccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 887778889999999999999988876 44555555555566543
No 61
>KOG0196|consensus
Probab=95.95 E-value=0.0076 Score=73.81 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=56.7
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+++||+.|+ ..+|+.+|..+|+ ..+.+..++-|||.. +||+..+|++||+..||.++..
T Consensus 924 ~sv~~WL~aIk--m~rY~~~F~~ag~~s~~~V~q~s~eDl~~-~Gitl~GhqkkIl~SIq~m~~q 985 (996)
T KOG0196|consen 924 RSVGDWLEAIK--MGRYKEHFAAAGYTSFEDVAQMSAEDLLR-LGITLAGHQKKILSSIQAMRAQ 985 (996)
T ss_pred CCHHHHHHHhh--hhHHHHHHHhcCcccHHHHHhhhHHHHHh-hceeecchhHHHHHHHHHHHHH
Confidence 36789999998 8899999999999 599999999999996 9999999999999999999764
No 62
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.71 E-value=0.13 Score=65.20 Aligned_cols=31 Identities=10% Similarity=0.144 Sum_probs=26.3
Q ss_pred hcCChHHHHHhhcCCChhHHhHHHHHHHHhh
Q psy4858 211 NCGGMDLLISNCVEKDLDLQFSSARLLEQCL 241 (979)
Q Consensus 211 ~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~ 241 (979)
..+-++.|+..|..++..|+..|+..|...-
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~ 649 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETT 649 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhc
Confidence 4556689999999999999999999987764
No 63
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.70 E-value=0.22 Score=63.36 Aligned_cols=237 Identities=13% Similarity=0.073 Sum_probs=115.4
Q ss_pred HHHHHHHHHHh---cCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhh
Q psy4858 201 IGYSLCNTLRN---CGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVG 277 (979)
Q Consensus 201 ~~~~lc~~ir~---~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~ 277 (979)
+-...+..|.. .+.++.|++.+..++.+|+..|+..|..+...... ...|.++. +. .|.++.+.+
T Consensus 637 VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~~L----~~-~d~~VR~~A 704 (897)
T PRK13800 637 VRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRDHL----GS-PDPVVRAAA 704 (897)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHHHh----cC-CCHHHHHHH
Confidence 44445555544 45568899999999999999999999887421111 11222333 11 344555554
Q ss_pred hhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCcc
Q psy4858 278 TGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDN 357 (979)
Q Consensus 278 ~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~ 357 (979)
.-+|..+ . .|..+.|+.+|+..|+.+.+.++.||.-+ .. +..|..+....+..
T Consensus 705 ~~aL~~~-~-----------~~~~~~l~~~L~D~d~~VR~~Av~aL~~~--~~-------------~~~l~~~l~D~~~~ 757 (897)
T PRK13800 705 LDVLRAL-R-----------AGDAALFAAALGDPDHRVRIEAVRALVSV--DD-------------VESVAGAATDENRE 757 (897)
T ss_pred HHHHHhh-c-----------cCCHHHHHHHhcCCCHHHHHHHHHHHhcc--cC-------------cHHHHHHhcCCCHH
Confidence 4444443 1 22234455566666666666666666543 10 12233344444445
Q ss_pred chhhHHHHHHHHhcchHH----HHHHHh---------hhhHHHHHhhCCcc----chHhhhhcCChhhhhhhhhhcccC-
Q psy4858 358 IKYYACLAIAVLVANTEI----EAAVLK---------SVQEAAVLKSGTLD----LVEPFVMSHSPSEFAKSNLAHAHG- 419 (979)
Q Consensus 358 vr~~A~lAla~Lasn~ei----~~~~~~---------~~~~~~V~~sG~l~----lv~~~~~~~~P~~fAr~~l~~~~g- 419 (979)
||..|+-||+.+...... -..+|+ ++.. +.+.|..+ .+...+..-+|. .|-.-+.+.|
T Consensus 758 VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~a--Lg~~g~~~~~~~~l~~aL~d~d~~--VR~~Aa~aL~~ 833 (897)
T PRK13800 758 VRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAA--LAELGCPPDDVAAATAALRASAWQ--VRQGAARALAG 833 (897)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHH--HHhcCCcchhHHHHHHHhcCCChH--HHHHHHHHHHh
Confidence 555555555544332110 001011 1111 12222211 122223222221 1111111111
Q ss_pred -CCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHh
Q psy4858 420 -QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLR 492 (979)
Q Consensus 420 -~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe 492 (979)
....-++.|+++|.......|.-|+.-|.. . .+ ...+++.|.+.....+......|..||.
T Consensus 834 l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~-~-----~~------~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 834 AAADVAVPALVEALTDPHLDVRKAAVLALTR-W-----PG------DPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred ccccchHHHHHHHhcCCCHHHHHHHHHHHhc-c-----CC------CHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 134466888888888888888777777631 0 00 1123445555555555555556666664
No 64
>KOG0507|consensus
Probab=95.68 E-value=0.0015 Score=79.17 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCChh-HHh---cCChhhhccccCCCChHHHHHHHHHHHHHHhhccc--CCCCccCh
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVDGD-LLL---QLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADY--SSKDVTNL 584 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~IDG~-~LL---~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~y--ss~d~~~l 584 (979)
.+-|.+|++.+|+++|.++...|+++|- ..+ .+-..++. .+|+..++||.+...++..++....| .+.++.+.
T Consensus 297 ~~t~gq~sd~~~~~~~q~~~~~n~~~gy~~sl~sn~i~~qpps-~~g~~~~l~~~ks~~a~ss~p~eg~~l~~g~~pt~~ 375 (854)
T KOG0507|consen 297 RQTVGQWSDSIGLPQYQPKLSQNGFDGYPHSLGSNVIEYQPPS-IIGILRSLHRQKSLQALSSLPKEGPYLTDGYNPTSV 375 (854)
T ss_pred hhhhhcCcccccccccccccccccccccCccccccchhhCCHH-HhccCCCCCcchhhhhhhcccccccccccCCCcccc
Confidence 5667889999999999999999999998 332 23444554 57999999999999999999987754 57788999
Q ss_pred HHHhhhcCCCcchhHHHHHhc-CC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 585 NNFLLNLGQEFSIYTYSMLNA-GV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 585 ~ewL~~IGpel~qYtys~l~~-Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
..||..+... ..|+-.++-. || ..+.++.+++-++-...++++..||.+|..+.-+...
T Consensus 376 ~smLds~r~~-gdlt~gs~~sk~Ys~i~s~knlses~~n~~~~~~~~g~r~v~vAsy~~~~~ 436 (854)
T KOG0507|consen 376 SSMLDSARLT-GDLTSGSLHSKGYSSIDSLKNLSESELNNVLKPTLKGHRKVIVASYGDRSK 436 (854)
T ss_pred cccccccCCC-CCcccccccccchhhhhhhhccccccCccccCCCccccccceecccccccC
Confidence 9999998522 1677776665 88 6899999999999999999999999998877665543
No 65
>KOG2160|consensus
Probab=95.49 E-value=0.085 Score=60.05 Aligned_cols=157 Identities=22% Similarity=0.202 Sum_probs=111.8
Q ss_pred hcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCc-cchhhHHH
Q psy4858 286 KHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD-NIKYYACL 364 (979)
Q Consensus 286 kHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd-~vr~~A~l 364 (979)
-|+=.|-..|+..||+++|+..+..+++++.+.||..|+-++=+. +..|+..++.|+-.-|+....+.++ .+|-.|..
T Consensus 111 ve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN-P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~ 189 (342)
T KOG2160|consen 111 VEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNN-PKSQEQVIELGALSKLLKILSSDDPNTVRTKALF 189 (342)
T ss_pred HHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHH
Confidence 566788899999999999999999999999999999999987665 7889999999999888888876665 77899999
Q ss_pred HHHHHhcchHHH-HHHHhhhhHHHHHhhCCccchHhhhhc--CChhhh--h---hhhhhccc----CC--C---chhhhh
Q psy4858 365 AIAVLVANTEIE-AAVLKSVQEAAVLKSGTLDLVEPFVMS--HSPSEF--A---KSNLAHAH----GQ--N---RNWLQK 427 (979)
Q Consensus 365 Ala~Lasn~ei~-~~~~~~~~~~~V~~sG~l~lv~~~~~~--~~P~~f--A---r~~l~~~~----g~--~---~g~L~~ 427 (979)
||..|.-|-+.- .+ ..+-++...+.+.+.+ +++--- | ...+.-.+ +. . ..-++-
T Consensus 190 AissLIRn~~~g~~~---------fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~ 260 (342)
T KOG2160|consen 190 AISSLIRNNKPGQDE---------FLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLEN 260 (342)
T ss_pred HHHHHHhcCcHHHHH---------HHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHH
Confidence 999999995554 55 4444445666666666 333210 1 11110000 01 1 114455
Q ss_pred hhhccccchHHHHHHHHHHhhHHhh
Q psy4858 428 LVPVLSSKREEARNLAAFHFCMEAG 452 (979)
Q Consensus 428 LvplL~s~~eE~q~lAafhl~~ea~ 452 (979)
++.+|...-.|++..+.+++..+..
T Consensus 261 l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 261 LISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HhhccchhhhHHHHHHHHHHHHHHh
Confidence 5566666777887888888876554
No 66
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.43 E-value=0.049 Score=53.95 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=78.7
Q ss_pred CeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccC---CCcCC
Q psy4858 659 DVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDN---ESECK 734 (979)
Q Consensus 659 DVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~---i~~~S 734 (979)
.|||-|.+ | ...+..+...|+..|+.+.++.+....|. ..+.|.+...+|+..|+++||+=......+. .....
T Consensus 1 kVFIvhg~-~-~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~aR 78 (125)
T PF10137_consen 1 KVFIVHGR-D-LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRAR 78 (125)
T ss_pred CEEEEeCC-C-HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCccccccccc
Confidence 48999994 4 56888899999988999999988888895 8899999999999999999997543211111 14456
Q ss_pred hhHHHHHHHHHhc-CC-eEEEEecCCCCCCCCCChHHHH
Q psy4858 735 DWVHREIVAALQS-GC-NIIPILDNFAWPDPEQLPADMR 771 (979)
Q Consensus 735 dWV~rEL~~Al~~-~k-~IIPVl~~f~~pd~e~LPedLr 771 (979)
+=|.-|+..++.. |+ +++-+..+ .-++|.|+.
T Consensus 79 ~NVifE~G~f~g~LGr~rv~~l~~~-----~v~~PSDl~ 112 (125)
T PF10137_consen 79 QNVIFELGLFIGKLGRERVFILVKG-----GVELPSDLS 112 (125)
T ss_pred cceeehhhHHHhhcCcceEEEEEcC-----CccCCcccC
Confidence 6799999998864 53 56666543 126676653
No 67
>KOG4646|consensus
Probab=95.33 E-value=0.016 Score=58.44 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=80.6
Q ss_pred hcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHH
Q psy4858 297 GLGGLDTVLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEI 375 (979)
Q Consensus 297 ~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei 375 (979)
+.|=|.+||...... +.+.+++-+..|||+|-+. .|=.-+-+-.+-..++......+..++.++.++|||||.|+.-
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP--~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n 91 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP--INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTN 91 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc--chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHH
Confidence 445567889999887 7999999999999999988 4446666777888888888888889999999999999999998
Q ss_pred HHHHHhhhhHHHHHhhCCccchHhhhhc
Q psy4858 376 EAAVLKSVQEAAVLKSGTLDLVEPFVMS 403 (979)
Q Consensus 376 ~~~~~~~~~~~~V~~sG~l~lv~~~~~~ 403 (979)
-.- |+..++++++--.+++
T Consensus 92 ~~~---------I~ea~g~plii~~lss 110 (173)
T KOG4646|consen 92 AKF---------IREALGLPLIIFVLSS 110 (173)
T ss_pred HHH---------HHHhcCCceEEeecCC
Confidence 888 8888888877666655
No 68
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=95.09 E-value=0.038 Score=50.42 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 503 SQQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
..+...||.++|..||+ +.+|.. .+..-.++|..|+.|+.+|+....+- .| ..|...++-||..
T Consensus 7 p~DP~~Ws~~~V~~WL~w~~~ef~L~~---~~~~F~mnG~~LC~ls~edF~~r~p~--~G--diL~~hL~~lk~a 74 (76)
T cd08532 7 SPDPYQWSPANVQKWLLWTEHQYRLPP---PPRCFELNGKDLCALSEEDFRRRAPQ--GG--DTLHAQLDIWKSA 74 (76)
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCC---chhcCCCCHHHHHcCCHHHHHHHcCC--ch--hHHHHHHHHHHHh
Confidence 34778999999999997 447777 55566999999999999998754333 33 3567777777754
No 69
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=94.91 E-value=0.045 Score=41.94 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhh
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL 241 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~ 241 (979)
..+..+++.||+++|+.++.+++.+++..|+.+|.|+.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788999999999999999999999999999999985
No 70
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=94.88 E-value=0.34 Score=56.99 Aligned_cols=205 Identities=11% Similarity=0.036 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHh
Q psy4858 180 VLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVR 259 (979)
Q Consensus 180 ~~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~ 259 (979)
+|.-+.+|+.. .|+..+.+ .-..+.+..-..++++.+..+|.-++..|+++|+.++...+. .+-..-+..++.
T Consensus 74 vL~Li~dll~~---~~~~~~~f---~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~-~~~~~~l~~~~~ 146 (429)
T cd00256 74 VLTLIDDMLQE---DDTRVKLF---HDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA-KMEGSDLDYYFN 146 (429)
T ss_pred HHHHHHHHHHh---chHHHHHH---HHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc-ccchhHHHHHHH
Confidence 45566666666 23331111 211222356678999999999999999999999999754221 111111444544
Q ss_pred hhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHH
Q psy4858 260 VACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEA 337 (979)
Q Consensus 260 la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~ 337 (979)
..+.-.++..+.+.+..+...|..| -..++-|.-.++.+|++.|+..++.. +..++|++..++==|+-++. ..+.
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~L-L~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~--~~~~ 223 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQML-LRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH--AAEV 223 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHH-hCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH--HHHh
Confidence 4443334334468888888899998 66788899999999999999999874 56899999999988888874 4466
Q ss_pred HHhcCCcchhccccccCC-ccchhhHHHHHHHHhcch-------HHHHHHHhhhhHHHHHhhCCccchHhhhhc
Q psy4858 338 MIKRKVPVWLFPLAFHND-DNIKYYACLAIAVLVANT-------EIEAAVLKSVQEAAVLKSGTLDLVEPFVMS 403 (979)
Q Consensus 338 mi~~~~~~wL~~La~s~d-d~vr~~A~lAla~Lasn~-------ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~ 403 (979)
+.+.+++.-|+.++...- ++|-=.+...+.||++.. .+-.. ++.+|.+..+.-+...
T Consensus 224 ~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~---------mv~~~l~~~l~~L~~r 288 (429)
T cd00256 224 LKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQ---------MVQCKVLKTLQSLEQR 288 (429)
T ss_pred hccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHH---------HHHcChHHHHHHHhcC
Confidence 778899999999887544 344334556889998842 22233 7778887766555443
No 71
>KOG0196|consensus
Probab=94.69 E-value=0.033 Score=68.54 Aligned_cols=62 Identities=18% Similarity=0.409 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 512 EDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 512 EDVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..|.+||+.|+|++|.++|..++++- +.+.+++.+||. .+||+-.||-|||+..|+.++...
T Consensus 924 ~sv~~WL~aIkm~rY~~~F~~ag~~s~~~V~q~s~eDl~-~~Gitl~GhqkkIl~SIq~m~~q~ 986 (996)
T KOG0196|consen 924 RSVGDWLEAIKMGRYKEHFAAAGYTSFEDVAQMSAEDLL-RLGITLAGHQKKILSSIQAMRAQM 986 (996)
T ss_pred CCHHHHHHHhhhhHHHHHHHhcCcccHHHHHhhhHHHHH-hhceeecchhHHHHHHHHHHHHHh
Confidence 45889999999999999999988765 456689999998 799999999999999999998764
No 72
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=94.59 E-value=0.03 Score=49.86 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHH----cCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 506 VPLWSTEDVREWVRQ----IGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 506 V~~WS~EDVa~WL~~----IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
...||.++|..||.- .+|+.-.-.+..-.++|..|+.|+.+|+....+. .| ..|...++.+.
T Consensus 2 P~~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms~edF~~~~p~--~G--diL~~~l~~~~ 67 (68)
T cd08757 2 PQYWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMTEEEFREAAGS--YG--SLLYAELQRLT 67 (68)
T ss_pred HhhCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCCHHHHHHHcCC--cH--HHHHHHHHHHh
Confidence 468999999999973 3565432344444999999999999998754443 33 35666666553
No 73
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=94.56 E-value=0.01 Score=54.56 Aligned_cols=70 Identities=30% Similarity=0.399 Sum_probs=46.4
Q ss_pred CcCCCCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 500 HKLSQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 500 ~kl~~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
..+..++..||.++|.+||.-. .|.-..-.+..-.++|..|+.||.+++....|. +--..|...|+.|+.
T Consensus 11 ~~~p~DP~~Wt~~~V~~Wl~w~~~~f~l~~~~~~~f~~~G~~Lc~lt~e~F~~~~~~---~~G~~Ly~~L~~Lk~ 82 (84)
T PF02198_consen 11 LWLPKDPRLWTKEDVLQWLRWVVREFDLPAIDFSRFNMNGRELCSLTKEDFRRRFPS---GYGDILYSHLQLLKK 82 (84)
T ss_dssp TTSCSSGGG--HHHHHHHHHHHHHHTT-SSCHGGGGTS-HHHHHHSHHHHHHHHSTH---TTHHHHHHHHHHHHH
T ss_pred hCCCCChhhCCHHHHHHHHHHHHHhcCCCcCchhccCCCHHHHHHcCHHHHHHHcCC---CcHHHHHHHHHHHHH
Confidence 3445588999999999999632 122223345566999999999999998854443 233467788888875
No 74
>KOG4500|consensus
Probab=94.46 E-value=0.064 Score=62.39 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=119.6
Q ss_pred cchhhHHHhhc-hhHHHhhhhhccccccccchhhh----hhhHhhhhhhcChhhHHHHhhcC-chHHHHhhhccCChhHH
Q psy4858 243 TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRV----GTGILEHLFKHSEGTCSDVIGLG-GLDTVLFECRKNDIETL 316 (979)
Q Consensus 243 ~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~----~~giL~~lfkHSe~t~~~lV~~G-gl~~Ll~l~r~~d~~~l 316 (979)
++-+=-.|+.| ++-+.+|++....-.+ -.-.++ +.....=+ ---||.-++|-..| -++-+++|++|.|...+
T Consensus 255 d~Vkl~la~~gl~e~~~~lv~~~k~~t~-k~d~~~l~k~~~el~vll-ltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~ 332 (604)
T KOG4500|consen 255 DLVKLSLAQNGLLEDSIDLVRNMKDFTK-KTDMLNLFKRIAELDVLL-LTGDESMQKLHADPQFLDFLESWFRSDDSNLI 332 (604)
T ss_pred cceeeehhhcchHHHHHHHHHhcccccc-hHHHHHHHHhhhhHhhhh-hcCchHHHHHhcCcHHHHHHHHHhcCCchhHH
Confidence 35566678889 7888899876432211 011111 11111111 23456667788777 79999999999999999
Q ss_pred HHHHHhhhhhcccCCchhHHHHHhcCCcchhcccccc--CCc-cc--hhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhh
Q psy4858 317 RHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH--NDD-NI--KYYACLAIAVLVANTEIEAAVLKSVQEAAVLKS 391 (979)
Q Consensus 317 r~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s--~dd-~v--r~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~s 391 (979)
--.+.|++|+|-.-.+. --|++++...-|..+... ..| +| ++-+|-||+||+--.--.++ +...
T Consensus 333 t~g~LaigNfaR~D~~c--i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~---------~~~a 401 (604)
T KOG4500|consen 333 TMGSLAIGNFARRDDIC--IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAH---------FAPA 401 (604)
T ss_pred HHHHHHHHhhhccchHH--HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhh---------cccc
Confidence 99999999999988666 567888887777665543 222 33 44445589999877666666 7777
Q ss_pred CCccchHhhhhcCChh-hhh----hhhh-------hcccCCCchhhhhhhhcccc
Q psy4858 392 GTLDLVEPFVMSHSPS-EFA----KSNL-------AHAHGQNRNWLQKLVPVLSS 434 (979)
Q Consensus 392 G~l~lv~~~~~~~~P~-~fA----r~~l-------~~~~g~~~g~L~~LvplL~s 434 (979)
|-..-+-+++..|.|- .|- .... +...+......++||.|=.|
T Consensus 402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks 456 (604)
T KOG4500|consen 402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKS 456 (604)
T ss_pred chHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhC
Confidence 7777777788887763 331 1111 12334567788999999877
No 75
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=94.20 E-value=0.064 Score=50.58 Aligned_cols=68 Identities=22% Similarity=0.444 Sum_probs=49.2
Q ss_pred CCCCCCCCCHHHHHHHHH----HcCchHHHHHHHh-cCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 502 LSQQVPLWSTEDVREWVR----QIGFAEYANNFVE-SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 502 l~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~e-n~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+..+...||.++|..||+ +.+|.+ -.+.. ..++|..||.|+.+|+....+-- .| ..|+..++-|+...
T Consensus 13 IP~DP~~Wt~~hV~~WL~Wa~~ef~L~~--vd~~~F~~m~Gk~LC~LskedF~~~~p~~-~g--diLw~HL~~Lr~~~ 85 (91)
T cd08541 13 VPADPTLWTQEHVRQWLEWAIKEYGLME--IDTSFFQNMDGKELCKMNKEDFLRATSLY-NT--EVLLSHLSYLRESS 85 (91)
T ss_pred CCCChhhcCHHHHHHHHHHHHHHcCCCC--CChhhccCCCHHHHHhCCHHHHHHHcCCC-cc--HHHHHHHHHHHhCc
Confidence 445788999999999997 446653 22222 36999999999999987422222 33 57889999998754
No 76
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=94.18 E-value=0.05 Score=48.10 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 506 VPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 506 V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
+..||.++|..||.-. +|+. ..+..-.++|..|+.||.+|+....|- .| ..|...++.|+
T Consensus 2 P~~Wt~~~V~~Wl~w~~~~f~L~~--~~~~~F~m~G~~Lc~ls~edF~~~~p~--~G--diL~~hL~~l~ 65 (66)
T cd08203 2 PRLWTKEHVLQWLEWAVKEFSLPP--IDFSKFNMNGKELCLLTKEDFLRRAPS--GG--DILYEHLQLLR 65 (66)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCC--CChhhcCCCHHHHHhCCHHHHHHHcCC--cH--HHHHHHHHHHh
Confidence 4689999999999844 5665 333344999999999999998754444 33 35666666654
No 77
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=94.08 E-value=0.07 Score=48.63 Aligned_cols=65 Identities=20% Similarity=0.443 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHH----HcCchHHHHHHHh-cCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 504 QQVPLWSTEDVREWVR----QIGFAEYANNFVE-SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~----~IGL~eY~~~F~e-n~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+...||.++|..||+ +.+|..-. +.. ..++|..|+.|+.+|+....+-- .| -.|+..++-|+..
T Consensus 3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~~~--~~~F~~m~Gk~LC~LskedF~~~ap~~-~G--diL~~HL~~Lr~~ 72 (75)
T cd08540 3 ADPTLWSTDHVRQWLEWAVKEYGLPDVD--VLLFQNIDGKELCKMTKDDFQRLTPSY-NA--DILLSHLHYLRET 72 (75)
T ss_pred CChhhcCHHHHHHHHHHHHHHhCCCCCC--cccccCCCHHHHHhCCHHHHHHHcCCC-Cc--hHHHHHHHHHHhC
Confidence 4678999999999997 34665522 323 36999999999999986433432 23 4678888888764
No 78
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=94.02 E-value=0.059 Score=50.62 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 502 LSQQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 502 l~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
+..+...||.++|..||. +.+|+.- .+..-.++|..|+.||.+|+....+-. .| ..|...++-|+..
T Consensus 15 IP~DP~~Wt~~~V~~WL~Wa~~ef~L~~v--~~~~F~m~Gk~LC~Ls~edF~~r~p~~-~G--diL~~hLe~Lrk~ 85 (89)
T cd08534 15 IPYDPMEWTEDQVLHWVVWAVKEFSLTDI--DLSDWNITGRELCSLTQEEFFQRVPKD-PG--DIFWTHLELLRKC 85 (89)
T ss_pred CCCChHHcCHHHHHHHHHHHHHHcCCCCC--ChhhcCCCHHHHhcCCHHHHHHHcCCC-cc--HHHHHHHHHHHHc
Confidence 445788999999999997 4466533 344558999999999999987544432 22 3677888877764
No 79
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=93.93 E-value=0.037 Score=50.99 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 503 SQQVPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
..+...||.++|..||.-. +|+. ..|..-.++|..|+.|+.+|+....+ ..| ..|...++.|+.
T Consensus 14 p~dP~~Wt~~~V~~Wl~w~~~ef~L~~--~~~~~f~m~G~~Lc~ls~edF~~~~p--~~G--diL~~hL~~Lk~ 81 (82)
T smart00251 14 PADPQLWTEDHVLEWLEWAVKEFSLSP--IDFSKFDMSGKELCSMSKEEFLERAP--FGG--DILWSHLQILRK 81 (82)
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCC--CCcccCCCCHHHHHcCCHHHHHHHcC--Cch--HHHHHHHHHHHh
Confidence 3477899999999999844 4432 22334489999999999999886555 233 467788887764
No 80
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=93.74 E-value=0.066 Score=47.92 Aligned_cols=62 Identities=26% Similarity=0.373 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 505 QVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
+...||.++|..||+ +++|+. -.+..-.++|..|+.|+.+|+....+ ..| ..|...++.|++
T Consensus 2 DP~~Wt~~~V~~WL~wa~~ef~L~~--i~~~~F~mnGk~LC~ls~edF~~r~p--~~G--diL~~hL~~L~~ 67 (68)
T cd08535 2 QPRYWSRDDVLQWLRWAENEFSLPP--IDSNTFEMNGKALCLLTKEDFRYRSP--HSG--DVLYELLQHLLK 67 (68)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCC--CChhccCCCHHHHhcCCHHHHhhhCC--Cch--HHHHHHHHHHHh
Confidence 457899999999997 335544 22344479999999999999874433 233 467777777764
No 81
>KOG1738|consensus
Probab=93.73 E-value=0.053 Score=65.23 Aligned_cols=69 Identities=20% Similarity=0.474 Sum_probs=63.2
Q ss_pred CCCCCCHHHHHHHHHHcC--chHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 505 QVPLWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IG--L~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+|..|+..+|+.|++..+ |.+|...|.++.+.|..|++++..+|+ .+|+...||+..++.+...|....
T Consensus 3 ~v~~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le-~lg~rrig~qeli~~av~~L~~l~ 73 (638)
T KOG1738|consen 3 PVETWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLE-TLGVRRIGHQELILEAVEQLWALK 73 (638)
T ss_pred cccccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHH-HHhhhhhhhHHHHHHHHHHHHHHH
Confidence 689999999999999997 899999999999999999999999998 699999999999988877766543
No 82
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=93.71 E-value=0.092 Score=48.26 Aligned_cols=67 Identities=21% Similarity=0.354 Sum_probs=50.6
Q ss_pred CCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.++..||.++|..||. +.+|..-.-.|..-.++|..|+.|+.+++....|. .| ..|...++.+|...
T Consensus 5 ~dP~~Ws~~~V~~WL~Wav~ef~L~~~~i~~~~f~m~Gk~LC~ms~eeF~~~~p~--~G--dvLy~~lq~~~~~~ 75 (78)
T cd08538 5 VHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAGI--CG--EYLYFILQNIRTQG 75 (78)
T ss_pred CCccccCHHHHHHHHHHHHHHcCCCccccchhhcCCCHHHHHcCCHHHHHHHccc--ch--HHHHHHHHHHHhcC
Confidence 3678999999999997 44666544566666999999999999998755554 23 45778888887654
No 83
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=93.69 E-value=0.069 Score=48.65 Aligned_cols=65 Identities=20% Similarity=0.446 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHH----HcCchHHHHHHHh-cCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 504 QQVPLWSTEDVREWVR----QIGFAEYANNFVE-SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~----~IGL~eY~~~F~e-n~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+...||.++|..||+ +.+|+.- .+.. ..++|..|+.||.+|+....+- .--..|...++.|+..
T Consensus 3 ~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~~m~Gk~LC~lt~edF~~~~~~---~~GdiL~~hL~~Lr~~ 72 (75)
T cd08531 3 ADPTLWTREHVRQWLEWAVKEYGLQDV--DVSRFQNIDGKELCKMTKEDFLRLTSA---YNADVLLSHLSYLRES 72 (75)
T ss_pred CChhhcCHHHHHHHHHHHHHHcCCCCC--ChhhccCCChHHHHcCCHHHHHHHcCC---CcchHHHHHHHHHHhC
Confidence 4678999999999997 4466432 2333 4899999999999998632222 1224677888888764
No 84
>KOG4374|consensus
Probab=93.64 E-value=0.033 Score=59.50 Aligned_cols=61 Identities=30% Similarity=0.346 Sum_probs=55.0
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+..||..+| |..|...|...-||.+.++.||+++|+ .+||+..+-|.+|.+||..++.+
T Consensus 152 ~~vl~~L~~lg--lg~y~~~f~~~evd~~~l~~lte~dlk-~~gi~~~GpRkKi~~A~~~~r~~ 212 (216)
T KOG4374|consen 152 EGVLMELGILG--LGAYWKMFEAIEVDMDNLRLLTEEDLK-DMGINSVGPRKKILCAIGKLRRS 212 (216)
T ss_pred chHHHHHHHHh--HHHHHHHHHHHHHHHHHHHhcccchhh-hhcccccCcchhhhhhhhccccc
Confidence 46778999998 899999999999999999999999999 59999999999999999987643
No 85
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=93.58 E-value=0.078 Score=47.86 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 505 QVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
+...||.++|..||+ +++|.. -.+..-.++|..|+.|+.+|+....+-- .| ..|...++.|++
T Consensus 3 DP~~Wt~~~V~~WL~Wa~~ef~L~~--v~~~~F~m~Gk~LC~ls~edF~~~~p~~-~G--dIL~~hL~~L~k 69 (71)
T cd08533 3 DPRLWTETHVRQWLLWAVNEFSLEG--VNFQKFCMSGRDLCALGKERFLELAPDF-VG--DILWEHLEILQK 69 (71)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCCHHHHHcCCHHHHHHHcCCC-cc--hHHHHHHHHHHh
Confidence 668999999999997 345552 2344448999999999999987543421 23 356777777765
No 86
>KOG1170|consensus
Probab=93.50 E-value=0.041 Score=67.42 Aligned_cols=63 Identities=19% Similarity=0.352 Sum_probs=57.1
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
+...+..||+.++ ++.|..+|.-+-+.+..|-+|-..||+ ++||++.+|-+||++||++|...
T Consensus 999 ~seeV~awLe~~~--LsEy~d~f~kndirGseLl~L~rrDLk-dlgvtkVGhvkril~aIkdl~~~ 1061 (1099)
T KOG1170|consen 999 TSEEVCAWLESIG--LSEYKDTFRKNDIRGSELLHLERRDLK-DLGVTKVGHVKRILSAIKDLRAQ 1061 (1099)
T ss_pred cHHHHHHHHhccc--cchhhhhhhccCcccceeeecCccccc-ccchhhhHHHHHHHHHHHHHHhc
Confidence 3445678999988 999999999999999999999999999 69999999999999999999543
No 87
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=93.47 E-value=0.81 Score=47.40 Aligned_cols=125 Identities=14% Similarity=0.132 Sum_probs=89.4
Q ss_pred HHHHhcCChHHHHHhhcCCCh------hHHhHHHHHHHHhh-cc-chhhHHHhhc-hhHHHhhhhhccccccccchhhhh
Q psy4858 207 NTLRNCGGMDLLISNCVEKDL------DLQFSSARLLEQCL-TT-ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVG 277 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s~~~------~~q~~aa~~Le~~~-~~-~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~ 277 (979)
..+...||+++|++...++.. +.-..+=.++-+++ +. -.|+ ++..- +.+++..+. ....|+.+.+.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn---~~~~d~~i~q~s 80 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVN---SSAMDASILQRS 80 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHc---cccccchHHHHH
Confidence 457788999999999988875 22222333333344 22 4665 44444 778777774 333478999999
Q ss_pred hhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHH
Q psy4858 278 TGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQE 336 (979)
Q Consensus 278 ~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~ 336 (979)
++|||+|.-.|..-...+-++=-++.|+..++.++++ ..+.|-||-|-=.-..+..++
T Consensus 81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~-iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQE-IQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCChHHH
Confidence 9999999988888899999999999999999997776 456778888864444444333
No 88
>KOG1222|consensus
Probab=93.16 E-value=0.37 Score=56.97 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=140.8
Q ss_pred HHHhcCChHHHHHhhcCCChhHHhHHHHHHHHh-hccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhh
Q psy4858 208 TLRNCGGMDLLISNCVEKDLDLQFSSARLLEQC-LTTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLF 285 (979)
Q Consensus 208 ~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~-~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lf 285 (979)
-+|...-...|++-+.-.+.++-..-...|-.+ ...||+..+++.| +.+|++|- .. .+.+.-....-.|-||
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klf----p~-~h~dL~~~tl~LlfNl- 372 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLF----PI-QHPDLRKATLMLLFNL- 372 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhc----CC-CCHHHHHHHHHHhhhc-
Confidence 456677777788888777777766666777777 5689999999999 89999998 33 3346666666677777
Q ss_pred hcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHH
Q psy4858 286 KHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLA 365 (979)
Q Consensus 286 kHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lA 365 (979)
.-..+.+-+.|..|-+|.|++++.+.+.-.. |...|.-++++. ..+.....--++..|....+++.+.----|.+|
T Consensus 373 SFD~glr~KMv~~GllP~l~~ll~~d~~~~i--A~~~lYh~S~dD--~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia 448 (791)
T KOG1222|consen 373 SFDSGLRPKMVNGGLLPHLASLLDSDTKHGI--ALNMLYHLSCDD--DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIA 448 (791)
T ss_pred cccccccHHHhhccchHHHHHHhCCcccchh--hhhhhhhhccCc--HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHH
Confidence 8888999999999999999999988765333 344556677776 333444667777888877777766323334445
Q ss_pred HH-HHhcchHHHHHHHhhhhHHHHHhhCCccchHhhh-hcCChh--hhhhhhhhcc---cCCCchhhhhhhhccccchHH
Q psy4858 366 IA-VLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFV-MSHSPS--EFAKSNLAHA---HGQNRNWLQKLVPVLSSKREE 438 (979)
Q Consensus 366 la-~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~-~~~~P~--~fAr~~l~~~---~g~~~g~L~~LvplL~s~~eE 438 (979)
+| |||.|+.---- |....+++++..-. ...+|. -..|+.+-|. |..=-.|...|...+.-+++|
T Consensus 449 ~ciNl~lnkRNaQl---------vceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E 519 (791)
T KOG1222|consen 449 LCINLCLNKRNAQL---------VCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSE 519 (791)
T ss_pred HHHHHHhccccceE---------EecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchH
Confidence 43 77888765544 56666777765443 333333 2245555442 111123555555555554444
Q ss_pred H
Q psy4858 439 A 439 (979)
Q Consensus 439 ~ 439 (979)
+
T Consensus 520 ~ 520 (791)
T KOG1222|consen 520 S 520 (791)
T ss_pred H
Confidence 3
No 89
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.68 E-value=0.37 Score=49.08 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=102.5
Q ss_pred CChHHHHHhhcC--CChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChh
Q psy4858 213 GGMDLLISNCVE--KDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEG 290 (979)
Q Consensus 213 Ggld~Li~~~~s--~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~ 290 (979)
..++.|+..+.. -+.+++-.+.=++.+++ +..|+..-+.=.+-+..+. .. .+.+--..+..+|..||----+
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~----~~-~~~d~~i~~~~~l~~lfp~~~d 76 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLL----DE-GEMDSLIIAFSALTALFPGPPD 76 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----CC-HHCCHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH----cc-ccchhHHHHHHHHHHHhCCCHH
Confidence 456667766654 56778888888999997 4444433222122222222 11 2345667778899999999999
Q ss_pred hHHHHh-hcCchHHHHhhhc--cCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc-cCCcc-chhhHHHH
Q psy4858 291 TCSDVI-GLGGLDTVLFECR--KNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF-HNDDN-IKYYACLA 365 (979)
Q Consensus 291 t~~~lV-~~Ggl~~Ll~l~r--~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~-s~dd~-vr~~A~lA 365 (979)
.|.+|. ..|-++.++..+. +.+..++..|+.+|+=-+++. +.+..|-+.+..||-.+.. +.++. +|..|+++
T Consensus 77 v~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~---~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 77 VGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDK---SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSH---HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 999999 5566667777888 678888888888887666665 4466677888999999995 55566 89999888
Q ss_pred HHHH
Q psy4858 366 IAVL 369 (979)
Q Consensus 366 la~L 369 (979)
|+-|
T Consensus 154 L~Kl 157 (157)
T PF11701_consen 154 LCKL 157 (157)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8753
No 90
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=92.52 E-value=0.15 Score=47.96 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=47.4
Q ss_pred cCCCCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 501 KLSQQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 501 kl~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+..+...||.++|..||. +.+|..- .+..-.++|..|+.|+.+|+....+-- .| ..|+..++-|+..
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~i--~~~~F~m~Gk~LC~Ls~edF~~~~P~~-~G--dIL~~HL~~L~k~ 85 (88)
T cd08542 14 GIPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMNGAALCALGKECFLELAPDF-VG--DILWEHLEILQKE 85 (88)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCCC--CcccCCCCHHHHHcCCHHHHHhHcCCC-cc--HHHHHHHHHHHHh
Confidence 3445788999999999997 3355432 333446999999999999986433321 23 4677888877764
No 91
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.31 E-value=0.43 Score=55.73 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=128.4
Q ss_pred HHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhh
Q psy4858 218 LISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIG 297 (979)
Q Consensus 218 Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~ 297 (979)
|.+.+.++|..+++.|-++|.++.+++ +++.-+..|.+++ .. +++.+.|.+.-.+.++|+.+.+....-
T Consensus 84 l~kdl~~~n~~~~~lAL~~l~~i~~~~----~~~~l~~~v~~ll----~~-~~~~VRk~A~~~l~~i~~~~p~~~~~~-- 152 (526)
T PF01602_consen 84 LQKDLNSPNPYIRGLALRTLSNIRTPE----MAEPLIPDVIKLL----SD-PSPYVRKKAALALLKIYRKDPDLVEDE-- 152 (526)
T ss_dssp HHHHHCSSSHHHHHHHHHHHHHH-SHH----HHHHHHHHHHHHH----HS-SSHHHHHHHHHHHHHHHHHCHCCHHGG--
T ss_pred HHHhhcCCCHHHHHHHHhhhhhhcccc----hhhHHHHHHHHHh----cC-CchHHHHHHHHHHHHHhccCHHHHHHH--
Confidence 345688999999999999999997443 4444467777887 44 445888999999999999987766541
Q ss_pred cCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHH--HhcCCcchhccccccCCccchhhHHHHHHHHhcchHH
Q psy4858 298 LGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAM--IKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEI 375 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~m--i~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei 375 (979)
-++.|..++...|+.++..|..+|..+ .. +.... +-++...-|..+....++.+++.+.-.+..++....-
T Consensus 153 --~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~---~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 153 --LIPKLKQLLSDKDPSVVSAALSLLSEI--KC---NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp --HHHHHHHHTTHSSHHHHHHHHHHHHHH--HC---THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred --HHHHHhhhccCCcchhHHHHHHHHHHH--cc---CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 266999999999999999999999999 11 11110 1112222233333566677788776667776665333
Q ss_pred HHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-hhhhhhcc--cC--CCchhhhhhhhccccchHHHHHHHHHHhh
Q psy4858 376 EAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-AKSNLAHA--HG--QNRNWLQKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 376 ~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-Ar~~l~~~--~g--~~~g~L~~LvplL~s~~eE~q~lAafhl~ 448 (979)
... +...++.+.+++++-+|... .-.+.... .. --....++|+.+|.++....+.++.-++.
T Consensus 226 ~~~-----------~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 226 DAD-----------KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hhh-----------HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 331 01122444444444445432 21111111 11 12347888888999888888888887764
No 92
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=92.24 E-value=0.15 Score=48.05 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=47.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 501 KLSQQVPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 501 kl~~~V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.+..++..||.++|..||.-. +|.. -.+..-.++|..|+.|+.+|+....+- -.| ..|+..++.|....
T Consensus 14 ~Ip~DP~~Wt~~~V~~WL~Wa~~ef~L~~--i~~~~F~m~Gk~LC~Ls~edF~~~ap~-~~G--dIL~~HL~~l~k~~ 86 (89)
T cd08543 14 GIPKNPWLWTEQQVCQWLLWATNEFSLVN--VNFQQFGMNGQELCNLGKERFLELAPD-FVG--DILWEHLEQMIKEN 86 (89)
T ss_pred CCCCChhhCCHHHHHHHHHHHHHHcCCCC--CCcccCCCChHHHHcCCHHHHHhHcCC-Ccc--hHHHHHHHHHHHHH
Confidence 344578899999999999844 5543 223334799999999999998743331 123 35777777776543
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=92.18 E-value=0.39 Score=42.54 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred hHHHHHhh-cCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 215 MDLLISNC-VEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 215 ld~Li~~~-~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
|+.|++.+ .+++..+|..|+.+|+++-.. ..+..|+.++ +. ++..+.+.+.-.|..+ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l----~d-~~~~vr~~a~~aL~~i-~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP--------EAIPALIELL----KD-EDPMVRRAAARALGRI-G------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH--------HHHHHHHHHH----TS-SSHHHHHHHHHHHHCC-H-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHH----cC-CCHHHHHHHHHHHHHh-C-------
Confidence 57899999 889999999999999965311 2267777777 33 5678888888888887 2
Q ss_pred HHhhcCchHHHHhhhccCC-hhHHHHHHHhhh
Q psy4858 294 DVIGLGGLDTVLFECRKND-IETLRHCAGALA 324 (979)
Q Consensus 294 ~lV~~Ggl~~Ll~l~r~~d-~~~lr~ca~ALa 324 (979)
...+++.|..++...+ ..+.+.|+.||+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2347889999999875 445677888875
No 94
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=91.15 E-value=0.42 Score=46.01 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=53.7
Q ss_pred hHhhhhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHH
Q psy4858 279 GILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMI 339 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi 339 (979)
.+|.||--.+.+++.++.+.|||+.||.-|.-. +|-+.++|.-|+=|| +.|.++||+.+.
T Consensus 8 rlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL-~e~n~eNQ~~I~ 69 (102)
T PF09759_consen 8 RLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNL-CEGNPENQEFIA 69 (102)
T ss_pred HHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 478888777889999999999999999999886 599999999999999 688899999885
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=90.74 E-value=0.32 Score=43.10 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=60.5
Q ss_pred hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch
Q psy4858 254 LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 254 l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
|+.|++.. .+.++..+.+.+.-+|..+ . ....++.|+.+++..|+.+.+.|+.||..+ |
T Consensus 1 i~~L~~~l----~~~~~~~vr~~a~~~L~~~-~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~--- 59 (88)
T PF13646_consen 1 IPALLQLL----QNDPDPQVRAEAARALGEL-G----------DPEAIPALIELLKDEDPMVRRAAARALGRI---G--- 59 (88)
T ss_dssp HHHHHHHH----HTSSSHHHHHHHHHHHHCC-T----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---H---
T ss_pred CHHHHHHH----hcCCCHHHHHHHHHHHHHc-C----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---C---
Confidence 34566655 2335556777755566644 1 113478999999999999999999999998 2
Q ss_pred hHHHHHhcCCcchhccccccCCc-cchhhHHHHHH
Q psy4858 334 NQEAMIKRKVPVWLFPLAFHNDD-NIKYYACLAIA 367 (979)
Q Consensus 334 ~q~~mi~~~~~~wL~~La~s~dd-~vr~~A~lAla 367 (979)
.+.+.++|..++.+.++ .+|..|+-||+
T Consensus 60 ------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23467888888887665 56888876664
No 96
>KOG1222|consensus
Probab=90.42 E-value=0.46 Score=56.15 Aligned_cols=191 Identities=15% Similarity=0.162 Sum_probs=147.8
Q ss_pred chhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccc
Q psy4858 272 EHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 272 ~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La 351 (979)
...|++.-.|.|| +..-.+--+..+..-+..||..|.+++.+++--...-|--|++++ +|+..|.+-|.++-|+.|-
T Consensus 278 qLLrva~ylLlNl-Aed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--eNK~~M~~~~iveKL~klf 354 (791)
T KOG1222|consen 278 QLLRVAVYLLLNL-AEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--ENKIVMEQNGIVEKLLKLF 354 (791)
T ss_pred HHHHHHHHHHHHH-hhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--cchHHHHhccHHHHHHHhc
Confidence 7889999999999 666666667788888889999999999999999999999999999 7889999999999999998
Q ss_pred ccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhc-ccC-C------Cch
Q psy4858 352 FHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAH-AHG-Q------NRN 423 (979)
Q Consensus 352 ~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~-~~g-~------~~g 423 (979)
-.+.+.++-.-..-+.||..|...+.- ++..|.+|-+..|+-+-+-..+|.+.+-| +.. . -.+
T Consensus 355 p~~h~dL~~~tl~LlfNlSFD~glr~K---------Mv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTd 425 (791)
T KOG1222|consen 355 PIQHPDLRKATLMLLFNLSFDSGLRPK---------MVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTD 425 (791)
T ss_pred CCCCHHHHHHHHHHhhhccccccccHH---------HhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHH
Confidence 888776554444567899999999999 99999999999999987777888887765 222 1 123
Q ss_pred hhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhh
Q psy4858 424 WLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVA 476 (979)
Q Consensus 424 ~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLa 476 (979)
+.+-|...+-+...+...++...||.|..+ ..||.+.+-+-.+...|-+-+
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~l--nkRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCL--NKRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHh--ccccceEEecCcchHHHHHHH
Confidence 555555554453333337777888888875 557777777755666664444
No 97
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=90.23 E-value=0.4 Score=43.80 Aligned_cols=65 Identities=20% Similarity=0.381 Sum_probs=49.9
Q ss_pred CCCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 505 QVPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
+...||..+|.+||.-. .|+--...|..-.++|+.|+.|+.+++....|. --..|...++.|+..
T Consensus 4 ~P~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms~e~F~~~~p~----~GdiLy~~l~~~~~~ 72 (74)
T cd08539 4 HPQYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMSLQEFTRAAGT----AGQLLYSNLQHLKWN 72 (74)
T ss_pred ChhhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccCHHHHhhcCCc----hHHHHHHHHHHHhcC
Confidence 56789999999999865 455545567777999999999999998743444 335678888888754
No 98
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=89.72 E-value=0.23 Score=44.29 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=34.3
Q ss_pred CCCCCHHHHHHHHHH----cCchHHHHHHHhcCCChhHHhcCChhhhccc
Q psy4858 506 VPLWSTEDVREWVRQ----IGFAEYANNFVESRVDGDLLLQLNEEHLRDD 551 (979)
Q Consensus 506 V~~WS~EDVa~WL~~----IGL~eY~~~F~en~IDG~~LL~LTeeDL~~d 551 (979)
...||.++|..||.- .+|+.- .+..-.++|..|+.|+.+++...
T Consensus 2 P~~Ws~~~V~~WL~w~~~ef~L~~~--~~~~F~m~Gk~LC~ls~edF~~r 49 (66)
T cd08536 2 PRSWSREHVRTWLRWVSARYQLEVV--DLDKFLMNGKGLCLMSLEGFLYR 49 (66)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCC--CccccCCCHHHHHcCCHHHHHhh
Confidence 468999999999984 366662 33344699999999999997743
No 99
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=89.70 E-value=1.3 Score=40.41 Aligned_cols=81 Identities=17% Similarity=0.051 Sum_probs=56.5
Q ss_pred CeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChh
Q psy4858 659 DVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDW 736 (979)
Q Consensus 659 DVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdW 736 (979)
.||||=.-.|=...-..|.+.+...|+....- +.+++. .-.+.+++.|+.|++||++++.+|=.. . -+.....
T Consensus 1 rVFiSSt~~Dl~~eR~~l~~~i~~~~~~~~~~-e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~-~---~~~~~S~ 75 (83)
T PF13271_consen 1 RVFISSTFRDLKEERDALIEAIRRLGCEPVGM-EFFPASDQSPLEICLKEVDECDIFILILGNRYGSV-P---EDSGISY 75 (83)
T ss_pred CEEEecChhhHHHHHHHHHHHHHHCCCeeeee-eeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC-C---CCCCcCh
Confidence 48999888785556667888898888766432 124443 366788999999999999999988221 0 0234567
Q ss_pred HHHHHHHH
Q psy4858 737 VHREIVAA 744 (979)
Q Consensus 737 V~rEL~~A 744 (979)
.+.|...|
T Consensus 76 Te~Ey~~A 83 (83)
T PF13271_consen 76 TELEYEYA 83 (83)
T ss_pred hHHHHhhC
Confidence 78887665
No 100
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=89.04 E-value=0.71 Score=53.98 Aligned_cols=146 Identities=14% Similarity=0.099 Sum_probs=103.4
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
-++.|.+.+..++..++.+|..++.+| ....+.+. .=+.++++..+..-.. .+.-.+.....+|..+...+.+...
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~-~~~~~q~~il~~l~~~~~~~~~~~~ 228 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSD-PDPWLQIKILRLLRRYAPMEPEDAD 228 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTC-CSHHHHHHHHHHHTTSTSSSHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhcccc-cchHHHHHHHHHHHhcccCChhhhh
Confidence 377888899999999999999999999 22222211 1133333333221122 3346677777788888777777762
Q ss_pred HHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcch
Q psy4858 294 DVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANT 373 (979)
Q Consensus 294 ~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ 373 (979)
. ..-++.++..+++.++.++..|+.++.++.-+. . .-..++..|..+..+.+.++||.|+-+|..++...
T Consensus 229 ~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 229 K---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred H---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 2 333449999999999999999999999884433 2 44556777888888888899999999999998876
No 101
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=89.01 E-value=2.5 Score=40.23 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHhcCCceEeecccCC----CC-cchHHH----HHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHH
Q psy4858 670 SQLASLLKVHLELRQFKVFIDVERLE----AG-KFDNNL----LQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHRE 740 (979)
Q Consensus 670 ~~~As~L~e~Le~~G~rVFiD~~~Ie----~G-df~~~L----~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rE 740 (979)
......+.+.|+..|+.||...+.-. .+ .+..+| .+.|++|+++|+++.+.-. +.=+.-|
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~-----------d~Gt~~E 81 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFRP-----------DSGTAFE 81 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS-------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCC-----------CCcHHHH
Confidence 56777899999999999998663211 12 255555 4589999999999998532 3448889
Q ss_pred HHHHHhcCCeEEEEecC
Q psy4858 741 IVAALQSGCNIIPILDN 757 (979)
Q Consensus 741 L~~Al~~~k~IIPVl~~ 757 (979)
+..|...||+||-+..+
T Consensus 82 lG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 82 LGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCCEEEEEEcC
Confidence 99999999988888654
No 102
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.94 E-value=3.7 Score=52.02 Aligned_cols=196 Identities=23% Similarity=0.329 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhcCCC-----hhHHhHHHHHHHHhh-ccchhhHHHhhc-hhHHHhhhhhcccccc---
Q psy4858 200 EIGYSLCNTLRNCGGMDLLISNCVEKD-----LDLQFSSARLLEQCL-TTENRDHVVENG-LDKVVRVACVCTKNIN--- 269 (979)
Q Consensus 200 ~~~~~lc~~ir~~Ggld~Li~~~~s~~-----~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~--- 269 (979)
|--+.++..+.++|||+.|++.+.+-. .++=....++|.-|. +..||..+++.| |+.++..+..|-....
T Consensus 104 e~~~~~~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~ 183 (802)
T PF13764_consen 104 EQEFKIASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSS 183 (802)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccc
Confidence 447889999999999999999888733 234444568888886 469999999998 9999988876644411
Q ss_pred ccchhhhhhhHhhhhhhcChhhHHHH------hhcC-----c---hHHHHhhhccC----ChhHHHHHHHhhhhhcccCC
Q psy4858 270 SVEHSRVGTGILEHLFKHSEGTCSDV------IGLG-----G---LDTVLFECRKN----DIETLRHCAGALANLSLYGG 331 (979)
Q Consensus 270 ~~~~~r~~~giL~~lfkHSe~t~~~l------V~~G-----g---l~~Ll~l~r~~----d~~~lr~ca~ALaNlAl~~~ 331 (979)
.++.+-.-+-|+|-+ -+|.+.+.+ .... + ++.+|.-+.+. ++.++.+-+..|.+|+ ||.
T Consensus 184 ~~~i~E~LL~IiE~l--l~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt-~G~ 260 (802)
T PF13764_consen 184 QAEIAEQLLEIIESL--LSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT-YGN 260 (802)
T ss_pred cchHHHHHHHHHHHH--HHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh-cCC
Confidence 134455545567766 334443333 1233 2 44455444443 6788889999999996 554
Q ss_pred chhHHHHHh---cCCcchhccccccCCccchhhHHHH-HH-HHhcch---HHHHHHHhhhhHHHHHhhCCccchHhhhhc
Q psy4858 332 AENQEAMIK---RKVPVWLFPLAFHNDDNIKYYACLA-IA-VLVANT---EIEAAVLKSVQEAAVLKSGTLDLVEPFVMS 403 (979)
Q Consensus 332 ~~~q~~mi~---~~~~~wL~~La~s~dd~vr~~A~lA-la-~Lasn~---ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~ 403 (979)
.+.=+.+++ +-+ .|=..=..++.+...+-.|++ |+ ++-.|. .+.-. |..+|.+.-.-.++..
T Consensus 261 ~e~m~~Lv~~F~p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~---------Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 261 EEKMDALVEHFKPYL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDK---------ILESGIVQDAIDYLLK 330 (802)
T ss_pred HHHHHHHHHHHHHhc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHH---------HHHhhHHHHHHHHHHH
Confidence 444444443 222 232222223333222222211 11 111222 23333 7888988777778888
Q ss_pred CChhh
Q psy4858 404 HSPSE 408 (979)
Q Consensus 404 ~~P~~ 408 (979)
|-|..
T Consensus 331 ~~P~~ 335 (802)
T PF13764_consen 331 HFPSL 335 (802)
T ss_pred hCccc
Confidence 88865
No 103
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=88.87 E-value=0.72 Score=40.22 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=45.6
Q ss_pred HHHHHHHcC--chHHHHHHHh-cCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 514 VREWVRQIG--FAEYANNFVE-SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 514 Va~WL~~IG--L~eY~~~F~e-n~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
|..+|..|| +.+|++.|.. + +.|+.++...|+ ++|| .+.+|+-|++..+..+.
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~~w----~~lf~~~s~~LK-~~GI-p~r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFESDW----EKLFTTSSKQLK-ELGI-PVRQRRYILRWREKYRQ 56 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHHHH----HHHHhcCHHHHH-HCCC-CHHHHHHHHHHHHHHhC
Confidence 678999997 8999999965 4 788899999998 7999 79999999998887653
No 104
>PF05536 Neurochondrin: Neurochondrin
Probab=88.09 E-value=2.9 Score=50.82 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=114.3
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhcc-----chhhHHHhh-chhHHHhhhhhcccccc--ccchhhhhhhHhhhhhh
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTT-----ENRDHVVEN-GLDKVVRVACVCTKNIN--SVEHSRVGTGILEHLFK 286 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~-----~Nr~~Iv~~-Gl~~lv~la~~~tk~~~--~~~~~r~~~giL~~lfk 286 (979)
++--++++.+.+++.||-+--+++.++.. .+|..|-+. |..=+-||.+++..... .-.....|..||... .
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f-~ 85 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF-C 85 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH-c
Confidence 44557888999999999999999999853 234456665 66666677766543321 113344455566555 6
Q ss_pred cChhhH--HHHhhcCchHHHHhhhccCCh-hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHH
Q psy4858 287 HSEGTC--SDVIGLGGLDTVLFECRKNDI-ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363 (979)
Q Consensus 287 HSe~t~--~~lV~~Ggl~~Ll~l~r~~d~-~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~ 363 (979)
-.++.- .+++. -||.|+..+++.+. .+..-|-..|.+++ +.+..++.+++.|++.-|+..+.+ ....+..|.
T Consensus 86 ~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ia--s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 RDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIA--SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred CChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHH--cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 666653 55554 79999999999866 99999999999998 666889999999999999999998 455677777
Q ss_pred HHHHHHhcchH
Q psy4858 364 LAIAVLVANTE 374 (979)
Q Consensus 364 lAla~Lasn~e 374 (979)
-.+.+|+++..
T Consensus 161 ~lL~~Lls~~~ 171 (543)
T PF05536_consen 161 NLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHhcc
Confidence 78888888755
No 105
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.92 E-value=11 Score=44.83 Aligned_cols=253 Identities=17% Similarity=0.164 Sum_probs=153.1
Q ss_pred HHHHhhcCC-ChhHHhHHHHHHHHhh-ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 217 LLISNCVEK-DLDLQFSSARLLEQCL-TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 217 ~Li~~~~s~-~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
.|..++.++ +...+..|++||..++ +++-|.-+++.+ +..|+++.+..+ .+++.+=. +-..-++.+-+++...
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~---~~~Ql~Y~-~ll~lWlLSF~~~~~~ 222 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNAT---LGFQLQYQ-SIFCIWLLTFNPHAAE 222 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcc---ccHHHHHH-HHHHHHHHhccHHHHH
Confidence 444555554 4778889999999997 469998777664 999999885322 12233333 2244566677878778
Q ss_pred HHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccC-----CchhHHHHHhcCCcchhccccccC--Cccc----hh-
Q psy4858 294 DVIGLGGLDTVLFECRKN-DIETLRHCAGALANLSLYG-----GAENQEAMIKRKVPVWLFPLAFHN--DDNI----KY- 360 (979)
Q Consensus 294 ~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~-----~~~~q~~mi~~~~~~wL~~La~s~--dd~v----r~- 360 (979)
.+.+.|-|+.|+..++.. -..+.|.|-..|-||.-.+ .......|+..|++.-|-.|.... |+.+ ++
T Consensus 223 ~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L 302 (429)
T cd00256 223 VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFL 302 (429)
T ss_pred hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 888899999999999998 5889999999999995533 223345688889888777776532 2211 11
Q ss_pred hHHH--HHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhcccc-chH
Q psy4858 361 YACL--AIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSS-KRE 437 (979)
Q Consensus 361 ~A~l--Ala~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s-~~e 437 (979)
+.-| -+-.|.+=.||..| ++||.++- -| .|.-..|=+.|..--...+-..++.|+.+|.. +..
T Consensus 303 ~e~L~~~~k~ltsfD~Y~~E----------l~sg~L~W-Sp---~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~ 368 (429)
T cd00256 303 TEELKNSVQDLSSFDEYKSE----------LRSGRLHW-SP---VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDP 368 (429)
T ss_pred HHHHHHHHHHcCCHHHHHHH----------HhcCCccC-CC---CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCc
Confidence 1100 12233333566666 46676632 11 23223554444332223345688999999964 334
Q ss_pred HHHHHH---HHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHh
Q psy4858 438 EARNLA---AFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLR 492 (979)
Q Consensus 438 E~q~lA---afhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe 492 (979)
...++| .-+|+++.. +.+......|+=+..-++...+++-..+-|-.|..
T Consensus 369 ~~laVAc~Dige~vr~~P-----~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQ 421 (429)
T cd00256 369 IILAVACHDIGEYVRHYP-----RGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQ 421 (429)
T ss_pred ceeehhhhhHHHHHHHCc-----cHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 443444 334555432 23344556677555666666665554444444443
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.59 E-value=0.34 Score=40.10 Aligned_cols=55 Identities=24% Similarity=0.126 Sum_probs=42.9
Q ss_pred hhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 313 IETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 313 ~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
+.+.+.|+.||++++-.++.. ..-..+.+..-|+.+..+.++.||..||.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~--~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPEL--LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHH--HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 457889999999976555322 3346677888899998888889999999999875
No 107
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=86.07 E-value=1.3 Score=42.67 Aligned_cols=63 Identities=21% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccccc--CCccchhhHHHHHHHHhcc-hHHHHH
Q psy4858 315 TLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH--NDDNIKYYACLAIAVLVAN-TEIEAA 378 (979)
Q Consensus 315 ~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s--~dd~vr~~A~lAla~Lasn-~ei~~~ 378 (979)
.++.+...|+||+ |....+|..+.+.++++++..-+-- .++.+|.+|.+||+||+-+ +|-|..
T Consensus 2 ~K~~lvrlianl~-~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLC-YKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHH-hCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3577888999996 8889999999999998888776643 2348999999999999987 777766
No 108
>KOG4413|consensus
Probab=85.86 E-value=7.2 Score=44.87 Aligned_cols=175 Identities=19% Similarity=0.291 Sum_probs=118.0
Q ss_pred HHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcC-CChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHh
Q psy4858 183 KVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVR 259 (979)
Q Consensus 183 ~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~ 259 (979)
+++++|-+.+.+... ..++....|-+|+|.+-|.. .|.-|..++--+.+.++. .-.|+++++.| ++-+-+
T Consensus 190 RVleLIieifSiSpe-------saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicn 262 (524)
T KOG4413|consen 190 RVLELIIEIFSISPE-------SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICN 262 (524)
T ss_pred HHHHHHHHHHhcCHH-------HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHH
Confidence 567788888876554 34556789999999999988 666688898889999975 48899999999 666667
Q ss_pred hhhhccccccccchhhhhhhHhh------hhhhcC-hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCc
Q psy4858 260 VACVCTKNINSVEHSRVGTGILE------HLFKHS-EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGA 332 (979)
Q Consensus 260 la~~~tk~~~~~~~~r~~~giL~------~lfkHS-e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~ 332 (979)
+. +|+++ .+.+--|.-. +.. +..+.| +..|..++- ++|-.+.-....||+.+..|--||--+ |.+
T Consensus 263 II-sGads-dPfekfralm-gfgkffgkeaimdvseeaicealii--aidgsfEmiEmnDpdaieaAiDalGil---GSn 334 (524)
T KOG4413|consen 263 II-SGADS-DPFEKFRALM-GFGKFFGKEAIMDVSEEAICEALII--AIDGSFEMIEMNDPDAIEAAIDALGIL---GSN 334 (524)
T ss_pred Hh-hCCCC-CcHHHHHHHH-HHHHHhcchHHhhcCHHHHHHHHHH--HHHhhHHhhhcCCchHHHHHHHHHHhc---cCC
Confidence 66 56665 4344444322 222 223544 456788876 577777888899999999999888766 322
Q ss_pred -hhHHHHHhcCC--cchhccccccCCccch-hhHHHHHHHHhcc
Q psy4858 333 -ENQEAMIKRKV--PVWLFPLAFHNDDNIK-YYACLAIAVLVAN 372 (979)
Q Consensus 333 -~~q~~mi~~~~--~~wL~~La~s~dd~vr-~~A~lAla~Lasn 372 (979)
+......+-|- .+.|+.-+|+.+..-+ .-|.-||++.++-
T Consensus 335 teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 335 TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 22233334343 3567777887777443 3333355665554
No 109
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=84.74 E-value=0.95 Score=41.76 Aligned_cols=65 Identities=20% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHc-CchHH---HHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 504 QQVPLWSTEDVREWVRQI-GFAEY---ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~I-GL~eY---~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
.++..||..+|.+||.-. +-.+| .-.|..-.++|..|+.|+.+++....|- .| ..|...++.|+.
T Consensus 8 ~~Pq~Wtk~qVleWL~~~~e~n~~dl~~v~f~~F~MnG~~LC~l~~e~F~~~a~p--~G--diLy~~L~~l~~ 76 (78)
T cd08537 8 EEPQFWTKTQVLEWISYHVEKNKYDASSIDFSRCDMDGATLCNCALDQMRLVFGP--LG--DQLYAQLRELTS 76 (78)
T ss_pred CCcccccHHHHHHHHHHHHHhccCCcccCCHHHhCCchHHHHccCHHHHHHHcCC--hH--HHHHHHHHHHhc
Confidence 366899999999999854 33333 3345666999999999999998643343 34 467788887765
No 110
>KOG0168|consensus
Probab=83.16 E-value=3.7 Score=51.66 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=118.6
Q ss_pred ChHHHHHhhcCC-ChhHHhHHHHHHHHhhccchhhHH----HhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 214 GMDLLISNCVEK-DLDLQFSSARLLEQCLTTENRDHV----VENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 214 gld~Li~~~~s~-~~~~q~~aa~~Le~~~~~~Nr~~I----v~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
-+.-|+.+++.. |+-+|..|+.=|-+.++--|-+-+ |+.=.+.||.|+. .+ ...|..=.+..+|-+||.--
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~---~E-~n~DIMl~AcRaltyl~evl 243 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS---HE-HNFDIMLLACRALTYLCEVL 243 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh---cc-ccHHHHHHHHHHHHHHHhhc
Confidence 367889999987 777999985544444555555544 3333677888882 23 44788888889999999999
Q ss_pred hhhHHHHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIA 367 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla 367 (979)
...|.-+|+.|+||+|+.-|... --++-++|-.||-=|+-.. . .++.+-|+..-.+.-.+==+-.+|-.| +||+
T Consensus 244 P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~--~AiL~AG~l~a~LsylDFFSi~aQR~A-laia 318 (1051)
T KOG0168|consen 244 PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--P--KAILQAGALSAVLSYLDFFSIHAQRVA-LAIA 318 (1051)
T ss_pred cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--c--HHHHhcccHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999988886 6889999999999986544 2 567777776544333221222445555 5665
Q ss_pred HH-hcc---hHHH--HHHHhhhhHHHHHhhCCccchHhhhhcCCh
Q psy4858 368 VL-VAN---TEIE--AAVLKSVQEAAVLKSGTLDLVEPFVMSHSP 406 (979)
Q Consensus 368 ~L-asn---~ei~--~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P 406 (979)
.. |.+ .++. ++ .+|++-++++-++-
T Consensus 319 aN~Cksi~sd~f~~v~e--------------alPlL~~lLs~~D~ 349 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVME--------------ALPLLTPLLSYQDK 349 (1051)
T ss_pred HHHHhcCCCccchHHHH--------------HHHHHHHHHhhccc
Confidence 44 332 2332 23 35788888877774
No 111
>KOG0946|consensus
Probab=81.34 E-value=33 Score=43.58 Aligned_cols=206 Identities=18% Similarity=0.175 Sum_probs=141.5
Q ss_pred hHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcCh-----hhHHH--------
Q psy4858 228 DLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSE-----GTCSD-------- 294 (979)
Q Consensus 228 ~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe-----~t~~~-------- 294 (979)
+=+-.|++-|-... -.=|..|.-.|+.+++.+... +. -|.+.-..+.-+|.++|.|.| ++..+
T Consensus 38 eDRR~A~rgLKa~s-rkYR~~Vga~Gmk~li~vL~~--D~-~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~i 113 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFS-RKYREEVGAQGMKPLIQVLQR--DY-MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWI 113 (970)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHhh--cc-CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHH
Confidence 55777878777665 577888999999999999842 33 567888888999999999985 12222
Q ss_pred ----HhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHH-HhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 295 ----VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAM-IKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 295 ----lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~m-i~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
+-+.+-|.-||..+.--|--|-+++-.-|.++--.-+.+.|.++ .-|-++.-|+-+....-+-||--|.|-|.-|
T Consensus 114 ae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL 193 (970)
T KOG0946|consen 114 AEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSEL 193 (970)
T ss_pred HHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHH
Confidence 23445667778888888999999999999999777788888886 5777788887777766667888888888877
Q ss_pred hcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhc-ccC-CCchhhhhhhhccccchHHHHHHHHHH
Q psy4858 370 VAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAH-AHG-QNRNWLQKLVPVLSSKREEARNLAAFH 446 (979)
Q Consensus 370 asn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~-~~g-~~~g~L~~LvplL~s~~eE~q~lAafh 446 (979)
+-+ .-||.-+ +|-| +|-|=-.+. .-| -+.|+.- |. |+-
T Consensus 194 ~k~n~~IQKlV--AFEN----------------------aFerLfsIIeeEGg~dGgIVv-----------eD-CL~--- 234 (970)
T KOG0946|consen 194 VKDNSSIQKLV--AFEN----------------------AFERLFSIIEEEGGLDGGIVV-----------ED-CLI--- 234 (970)
T ss_pred HccCchHHHHH--HHHH----------------------HHHHHHHHHHhcCCCCCcchH-----------HH-HHH---
Confidence 765 6677662 2222 122211111 122 2222221 22 322
Q ss_pred hhHHhhhhhhcCCchhhhhhCccchhhhhhc
Q psy4858 447 FCMEAGIKKQQGKTDIFKEIGAIEPLKKVAS 477 (979)
Q Consensus 447 l~~ea~iKk~q~n~~~F~eiGaIe~LkrLas 477 (979)
.++-..|..--|-..|.|.+-|++|.++.+
T Consensus 235 -ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~ 264 (970)
T KOG0946|consen 235 -LLNNLLKNNISNQNFFREGSYIPRLLKLLS 264 (970)
T ss_pred -HHHHHHhhCcchhhHHhccccHHHHHhhcC
Confidence 233345666678899999999999988865
No 112
>KOG1293|consensus
Probab=79.99 E-value=22 Score=44.02 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=94.3
Q ss_pred hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch
Q psy4858 254 LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 254 l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
..|+|.|... .+..+.-..+|+|-|+.=.=..-+++.++.||||.|.......|+.++.-+--+|-|+.-+...+
T Consensus 421 ~~plvqll~d-----p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 421 AQPLVQLLMD-----PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred HHHHHHHhhC-----cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 5678888733 33477888999999997666677899999999999999999999999999999999996665555
Q ss_pred hHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHHH
Q psy4858 334 NQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 334 ~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~ 378 (979)
-|.....+=...-+..+....|.-||.++.--++||.-|++--.+
T Consensus 496 ~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 496 EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 555555555566677777777778877776668999999555444
No 113
>KOG1945|consensus
Probab=79.87 E-value=2.1 Score=49.14 Aligned_cols=68 Identities=21% Similarity=0.396 Sum_probs=61.9
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+..|...+|..|+.......|+..|..+.+.|..|+.+....++ -||.++..+|....+.++.+...
T Consensus 263 ~l~~~~k~q~~~~~~s~~kei~a~e~a~q~~~~y~L~q~q~~~k~-~L~~tk~~dralr~k~le~~~~~ 330 (377)
T KOG1945|consen 263 LLVTWKKQQVYHWLLSLNKEIYAQEFAAQEQAGYQLLQLQGRKKK-LLGRTKSHDRALRKKKLEEMSAV 330 (377)
T ss_pred hhhhhHHHHHHHHHHhhhHHHHHHHHHHhhcccchhhccchHHHH-HhhccccchHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999887 69999999999888888877654
No 114
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=79.71 E-value=4.7 Score=42.87 Aligned_cols=102 Identities=23% Similarity=0.202 Sum_probs=79.2
Q ss_pred hhhhhhHhhhhhhcChhhHHHHhhcC----------------chHHHHhhhcc------CChhHHHHHHHhhhhhcccCC
Q psy4858 274 SRVGTGILEHLFKHSEGTCSDVIGLG----------------GLDTVLFECRK------NDIETLRHCAGALANLSLYGG 331 (979)
Q Consensus 274 ~r~~~giL~~lfkHSe~t~~~lV~~G----------------gl~~Ll~l~r~------~d~~~lr~ca~ALaNlAl~~~ 331 (979)
+-...-+|.|| +.+++.|..|...+ .++.|+.++-. ...+-..|.|-.|+||+-..
T Consensus 12 adl~~MLLsNl-T~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~- 89 (192)
T PF04063_consen 12 ADLACMLLSNL-TRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP- 89 (192)
T ss_pred HHHHHHHHHHh-ccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH-
Confidence 33444589999 99999998777654 46778888777 35778999999999998877
Q ss_pred chhHHHHHh--cCC--cchhccccccCCccchhhHHHHHHHHhcchHHHHH
Q psy4858 332 AENQEAMIK--RKV--PVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 332 ~~~q~~mi~--~~~--~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~ 378 (979)
+.++.+.+ ++. ..-|.+...+.+..-|-=++.+|.|.|.+.+.+..
T Consensus 90 -~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~ 139 (192)
T PF04063_consen 90 -EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEW 139 (192)
T ss_pred -HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHH
Confidence 55577764 344 67888888888665566667899999999999988
No 115
>KOG1293|consensus
Probab=79.45 E-value=5.6 Score=48.91 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=82.4
Q ss_pred ccccccchhhhhhhHhhhhhhcC-hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCc
Q psy4858 266 KNINSVEHSRVGTGILEHLFKHS-EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVP 344 (979)
Q Consensus 266 k~~~~~~~~r~~~giL~~lfkHS-e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~ 344 (979)
--.+|.++.|.|.--|.+. .-| +.-+..+-+..+.++||.++--++.-+..-+.+||-||-|.=++- |..+++-|++
T Consensus 386 ~~~kd~~~~aaa~l~~~s~-srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~-kskfl~~ngI 463 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSF-SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGI 463 (678)
T ss_pred cccccHHHHHHHHHHHHHH-HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcH
Confidence 3446667777733333332 111 112223455678899999998889999999999999998865544 6899999999
Q ss_pred chhccccccCCccchhhHHHHHHHHhcchHHH
Q psy4858 345 VWLFPLAFHNDDNIKYYACLAIAVLVANTEIE 376 (979)
Q Consensus 345 ~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~ 376 (979)
.-|-.+.++.+.++|+.+.-+|++|..|...+
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~ 495 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEE 495 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999994443
No 116
>KOG0168|consensus
Probab=76.47 E-value=6.6 Score=49.65 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=109.2
Q ss_pred HHHHHhhc-CCChhHHhHHHHHHHHhh--ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh
Q psy4858 216 DLLISNCV-EKDLDLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT 291 (979)
Q Consensus 216 d~Li~~~~-s~~~~~q~~aa~~Le~~~--~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t 291 (979)
.-|+.++. .-+.+++..|+|+|+.+. -+.--.-||+.| +..++.=. -...=+|++--++-+||.+ |-.-
T Consensus 214 p~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL----~~IeyiDvAEQ~LqALE~i---SR~H 286 (1051)
T KOG0168|consen 214 PVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL----LTIEYIDVAEQSLQALEKI---SRRH 286 (1051)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh----hhhhhhHHHHHHHHHHHHH---Hhhc
Confidence 34555554 356899999999999995 468999999988 55444322 1224467777777777777 7777
Q ss_pred HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 292 CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
-..+.++|||-++|.-+-.=..-.+|.|-.--||+--.=.+..=.-+++ +.+.|-+|..+.|++.-.++|.+++-+|-
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 7889999999999999988888899999888889832221121122332 36778889999999999999999998886
Q ss_pred c
Q psy4858 372 N 372 (979)
Q Consensus 372 n 372 (979)
+
T Consensus 365 ~ 365 (1051)
T KOG0168|consen 365 G 365 (1051)
T ss_pred h
Confidence 6
No 117
>KOG1517|consensus
Probab=74.68 E-value=12 Score=48.52 Aligned_cols=149 Identities=18% Similarity=0.149 Sum_probs=99.2
Q ss_pred cCchHHHHhhhccCChhHHHHHHHhhhhh-cccCCchhHHHHHhcCCcchhccccccC---CccchhhHHHHHHHHhcc-
Q psy4858 298 LGGLDTVLFECRKNDIETLRHCAGALANL-SLYGGAENQEAMIKRKVPVWLFPLAFHN---DDNIKYYACLAIAVLVAN- 372 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl-Al~~~~~~q~~mi~~~~~~wL~~La~s~---dd~vr~~A~lAla~Lasn- 372 (979)
-|=.|-+|.||+++..++.---+=-=|-| |++ +++|-.+++.++..+++.....+ ++..|--|+..||+++.|
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD--~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVD--PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcC--chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 46679999999999887665433333333 888 59999999999999888776652 237899999999999999
Q ss_pred hHHHHHHHh-hhhHHH--HHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHHHHhh
Q psy4858 373 TEIEAAVLK-SVQEAA--VLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 373 ~ei~~~~~~-~~~~~~--V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAafhl~ 448 (979)
+--|.+-|. -|.++- ...++..+|+.+.+....---+.....+--.|...+.-+.|+.+|+-.--|.|+.|.|.|-
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 545555221 111100 2222222333333333222223333334457889999999999999999999999999864
No 118
>KOG4646|consensus
Probab=73.75 E-value=17 Score=37.58 Aligned_cols=104 Identities=17% Similarity=0.065 Sum_probs=80.8
Q ss_pred chhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccc
Q psy4858 272 EHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 272 ~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La 351 (979)
+-.--.+.=|.| |.....|-+-|-.+.+||..|.-+...|.....|.-++|-|+-++- .|.+-|.+.+++.......
T Consensus 32 eakeqv~ANLAN-FAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~--~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 32 EAKEQVTANLAN-FAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK--TNAKFIREALGLPLIIFVL 108 (173)
T ss_pred HHHHHHHHHHHh-hccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh--HHHHHHHHhcCCceEEeec
Confidence 444444555666 4999999999999999999999999999999999999999998887 5657787666655555555
Q ss_pred ccCCccchhhHHHHHHHHhcchHHHHH
Q psy4858 352 FHNDDNIKYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 352 ~s~dd~vr~~A~lAla~Lasn~ei~~~ 378 (979)
.+....+--+|++++.-|+.-..-+.+
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ 135 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERD 135 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhH
Confidence 555556667788999988876555544
No 119
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.69 E-value=2.1 Score=42.52 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=58.1
Q ss_pred hhhHHHHhhcCchHHHHhhh-ccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVLFEC-RKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIA 367 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~-r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla 367 (979)
+++.-+|++ .|+.++ .+.|+.++..|.-=|.-+.-+- +..+..+-+-|+-.-.+.||.+.|+.|||+|.+|+-
T Consensus 38 ~~~~~~llk-----~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 38 EENNFELLK-----KLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp SSGGGHHHH-----HHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHcccHHHH-----HHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 444555665 788888 4458999988887777775554 444455568899999999999999999999999987
Q ss_pred HHhcc
Q psy4858 368 VLVAN 372 (979)
Q Consensus 368 ~Lasn 372 (979)
-|..+
T Consensus 112 klm~~ 116 (119)
T PF11698_consen 112 KLMVN 116 (119)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76543
No 120
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.57 E-value=4.5 Score=30.30 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=23.7
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhh
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCL 241 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~ 241 (979)
+..|++++..++.+|+..|+.+|+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999885
No 121
>KOG2171|consensus
Probab=72.99 E-value=19 Score=46.98 Aligned_cols=151 Identities=12% Similarity=0.055 Sum_probs=101.0
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~ 294 (979)
++-|-..+++++...+..|-..|..+ .|...++.+.-|++|+..++.+=.. .++++.=.+.-++.-|=++=--.-++
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i--~EGc~~~m~~~l~~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk 426 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVI--AEGCSDVMIGNLPKILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQK 426 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHH--HcccHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHH
Confidence 44555788889888888875555544 3666777766799999999888444 33455555555666662222233344
Q ss_pred HhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCC---cc-hhccccccCCccchhhHHHHHHHH
Q psy4858 295 VIGLGGLDTVLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKV---PV-WLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 295 lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~---~~-wL~~La~s~dd~vr~~A~lAla~L 369 (979)
=-..--+++|++.+.+. .+.++-|||.||-|++-..... ++++=+ .+ -|-.|-++....+|+.|.-|||.-
T Consensus 427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~----~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS----ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH----HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 44455667999999998 6799999999999997665222 222211 12 344455677779999999999888
Q ss_pred hcc
Q psy4858 370 VAN 372 (979)
Q Consensus 370 asn 372 (979)
|..
T Consensus 503 A~A 505 (1075)
T KOG2171|consen 503 ADA 505 (1075)
T ss_pred HHH
Confidence 766
No 122
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=70.88 E-value=3.2 Score=34.31 Aligned_cols=48 Identities=19% Similarity=0.073 Sum_probs=34.2
Q ss_pred hhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHh
Q psy4858 191 AWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQC 240 (979)
Q Consensus 191 Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~ 240 (979)
+|+++++.......+.. .....++.|+..+..++.+|+-+|+.+|+++
T Consensus 8 ~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 8 AWALGRLAEGCPELLQP--YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57776553333333322 3445688999999999999999999999875
No 123
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=70.50 E-value=24 Score=38.12 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=73.1
Q ss_pred CeeEecccCCccchHHHHHHHHHhc--CCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccch--hhccc--CCC
Q psy4858 659 DVFISYRRSNGSQLASLLKVHLELR--QFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALD--RCMED--NES 731 (979)
Q Consensus 659 DVFISYRR~Dg~~~As~L~e~Le~~--G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~--~~~~~--~i~ 731 (979)
.|||=|..+. .|....++|.++ =..||.|. -...|. .-+.|++.|...++.|++++|+=-. .+..+ -.+
T Consensus 84 kvFvv~ghd~---iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p 159 (233)
T COG4271 84 KVFVVSGHDA---IARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP 159 (233)
T ss_pred eEEEEeccHH---HHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence 9999887754 777777777655 45667664 334564 8899999999999999999998431 01111 234
Q ss_pred cCChhHHHHHHHHHhc-C-CeEEEEecCCCCCCCCCChHHHHHHh
Q psy4858 732 ECKDWVHREIVAALQS-G-CNIIPILDNFAWPDPEQLPADMRAIC 774 (979)
Q Consensus 732 ~~SdWV~rEL~~Al~~-~-k~IIPVl~~f~~pd~e~LPedLr~la 774 (979)
...+-|.-|+...+-. | ++|+-+... ++.-++|.||..+.
T Consensus 160 raRqNVifELGm~mgrLgRkrv~Il~k~---~envelPSDi~Gv~ 201 (233)
T COG4271 160 RARQNVIFELGMFMGRLGRKRVMILMKR---DENVELPSDIAGVT 201 (233)
T ss_pred cccccchhhHhhHHhhcccceEEEEecc---cccccCccccCceE
Confidence 5555688899887764 4 455555332 33448999886653
No 124
>PTZ00429 beta-adaptin; Provisional
Probab=69.51 E-value=88 Score=39.96 Aligned_cols=210 Identities=13% Similarity=0.068 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhh
Q psy4858 200 EIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTG 279 (979)
Q Consensus 200 ~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~g 279 (979)
+++--.||+|+ +-|.++|+.+++.|-|.|..+-+++ +++.-+.+|.+.. .. +++-+-|.+.-
T Consensus 101 elalLaINtl~---------KDl~d~Np~IRaLALRtLs~Ir~~~----i~e~l~~~lkk~L----~D-~~pYVRKtAal 162 (746)
T PTZ00429 101 EKALLAVNTFL---------QDTTNSSPVVRALAVRTMMCIRVSS----VLEYTLEPLRRAV----AD-PDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHHHHH---------HHcCCCCHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHh----cC-CCHHHHHHHHH
Confidence 44444555554 5688999999999999999886544 3333344555555 33 55678888888
Q ss_pred HhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccch
Q psy4858 280 ILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIK 359 (979)
Q Consensus 280 iL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr 359 (979)
.+.+||.++.+.+ ...|=++.|..++..+|+.|+.+|..+|.-+.-.+.. ..-.-++....|....-.-++..|
T Consensus 163 ai~Kly~~~pelv---~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~---~l~l~~~~~~~Ll~~L~e~~EW~Q 236 (746)
T PTZ00429 163 GLGKLFHDDMQLF---YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE---KIESSNEWVNRLVYHLPECNEWGQ 236 (746)
T ss_pred HHHHHHhhCcccc---cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch---hhHHHHHHHHHHHHHhhcCChHHH
Confidence 8999998887543 3455667888888899999999999999999533321 111223333334444444456666
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhh-hh--hhhhhcccCCCch----hh----hhh
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSE-FA--KSNLAHAHGQNRN----WL----QKL 428 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~-fA--r~~l~~~~g~~~g----~L----~~L 428 (979)
++..-.|+......+-+.. ..++.+.+.+++-+|++ |+ +..+.+....+.. .+ .+|
T Consensus 237 i~IL~lL~~y~P~~~~e~~-------------~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pL 303 (746)
T PTZ00429 237 LYILELLAAQRPSDKESAE-------------TLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTAL 303 (746)
T ss_pred HHHHHHHHhcCCCCcHHHH-------------HHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHH
Confidence 6554344333222111111 11345666677777763 32 3322222111112 22 345
Q ss_pred hhccccchHHHHHHHHHHh
Q psy4858 429 VPVLSSKREEARNLAAFHF 447 (979)
Q Consensus 429 vplL~s~~eE~q~lAafhl 447 (979)
+-|+ +...|.|.++.-+.
T Consensus 304 v~L~-ss~~eiqyvaLr~I 321 (746)
T PTZ00429 304 LTLS-RRDAETQYIVCKNI 321 (746)
T ss_pred HHhh-CCCccHHHHHHHHH
Confidence 5554 44567888887775
No 125
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=67.45 E-value=18 Score=38.08 Aligned_cols=80 Identities=19% Similarity=0.149 Sum_probs=57.8
Q ss_pred ccchHHHHHHHHHhcCCceEee------cccCCCCcchHHHH----HHHHhCCEEEEEECcccchhhcccCCCcCChhHH
Q psy4858 669 GSQLASLLKVHLELRQFKVFID------VERLEAGKFDNNLL----QSIKQARNFLLVLTPKALDRCMEDNESECKDWVH 738 (979)
Q Consensus 669 g~~~As~L~e~Le~~G~rVFiD------~~~Ie~Gdf~~~L~----~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~ 738 (979)
.......|+..|.+.|+.+|.= .....++++...|. .-|.+||++|+++.|-= .+..+=.-
T Consensus 18 ~i~~~d~lkall~~~gf~~~~P~d~~~~~~~~~p~~~a~~i~e~d~~~i~~aD~vla~ld~fr---------~~~DsGTa 88 (172)
T COG3613 18 EIELRDELKALLLEAGFEVLSPFDEAEPIAETGPNETAEKIYEADIKLIDQADIVLANLDPFR---------PDPDSGTA 88 (172)
T ss_pred HHHHHHHHHHHHHHcCCeeeCcchhccCccccCccHHHHHHHHHHHHHHhhcCEEEEecCCCC---------CCCCCcch
Confidence 3566778899999999999874 33444544444444 46999999999999852 11223345
Q ss_pred HHHHHHHhcCCeEEEEecC
Q psy4858 739 REIVAALQSGCNIIPILDN 757 (979)
Q Consensus 739 rEL~~Al~~~k~IIPVl~~ 757 (979)
.|+.+|...||++++....
T Consensus 89 ~E~GYa~AlgKPv~~~~~d 107 (172)
T COG3613 89 FELGYAIALGKPVYAYRKD 107 (172)
T ss_pred HHHHHHHHcCCceEEEeec
Confidence 6999999999999999653
No 126
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=67.42 E-value=69 Score=38.00 Aligned_cols=120 Identities=10% Similarity=-0.081 Sum_probs=81.8
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~ 294 (979)
++.|+..+..++..++..+|..|+.+=.+.= ...|+.+. +. +++.+.+.+.++|...
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a--------~~~L~~~L----~~-~~p~vR~aal~al~~r---------- 144 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQA--------EPWLEPLL----AA-SEPPGRAIGLAALGAH---------- 144 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHH--------HHHHHHHh----cC-CChHHHHHHHHHHHhh----------
Confidence 7888999989988899999999886421110 34445555 33 4456777755555542
Q ss_pred HhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 295 VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 295 lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
.....++|+.++...|+.+.+.+..+|.-+--- .+..-|.....+.++.||.-|..|++-+-.
T Consensus 145 --~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~ 207 (410)
T TIGR02270 145 --RHDPGPALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS 207 (410)
T ss_pred --ccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 223456888889999999999999999877211 112335556778888999998888866633
No 127
>KOG2759|consensus
Probab=67.02 E-value=19 Score=42.68 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=83.1
Q ss_pred HHHhcCChHHHHHhhcC--CChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhh
Q psy4858 208 TLRNCGGMDLLISNCVE--KDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEH 283 (979)
Q Consensus 208 ~ir~~Ggld~Li~~~~s--~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~ 283 (979)
+++...|..+|++.+.+ .+-++|+.+-.|+=.++- +.=-+++.+.+ +..|+.+...++|+ -+.|...+|+.|
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KE----KV~Rivlai~~N 268 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKE----KVTRIVLAIFRN 268 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45568899999998843 457899999999988863 33336675556 89999999999998 799999999999
Q ss_pred hhhcCh------hhHHHHhhcCchHHHHhhhccC--ChhHHH
Q psy4858 284 LFKHSE------GTCSDVIGLGGLDTVLFECRKN--DIETLR 317 (979)
Q Consensus 284 lfkHSe------~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr 317 (979)
+-...+ +.+++.|-.+.+..|=.+-.+. |+++..
T Consensus 269 ll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~ 310 (442)
T KOG2759|consen 269 LLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVD 310 (442)
T ss_pred HhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHH
Confidence 977664 7888999888887776666664 777653
No 128
>KOG2999|consensus
Probab=66.94 E-value=23 Score=43.30 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=86.7
Q ss_pred HHHHHHHhcCChHHHHHhhcCCCh----hHHhHHHHHHHHhh-c-cchhhHHHhhchhHHHhhhhhccccccccchhhhh
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDL----DLQFSSARLLEQCL-T-TENRDHVVENGLDKVVRVACVCTKNINSVEHSRVG 277 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~----~~q~~aa~~Le~~~-~-~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~ 277 (979)
.....+..+.|+++|.+....++. ++--.+-+.+-.++ + .-.++-+-..++.++.-++ .....+...--.+
T Consensus 115 ~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V---~~~~~~a~~~~~A 191 (713)
T KOG2999|consen 115 TFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYV---NAKREDANTLLAA 191 (713)
T ss_pred HHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHH---hhhhhcccchHHH
Confidence 445677889999999999988875 23323323333332 1 1333333333433333333 3333556777888
Q ss_pred hhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch
Q psy4858 278 TGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 278 ~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
.++||+|.-.|+.+++.|.+.--++.|+..+.-+|..++.+ |.||.|--.-+.+.
T Consensus 192 L~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~-aial~nal~~~a~~ 246 (713)
T KOG2999|consen 192 LQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTC-AIALLNALFRKAPD 246 (713)
T ss_pred HHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHH-HHHHHHHHHhhCCh
Confidence 99999998899999999999999999999999999988887 88888864444333
No 129
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=66.56 E-value=7.1 Score=38.83 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=51.9
Q ss_pred hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhh
Q psy4858 254 LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALAN 325 (979)
Q Consensus 254 l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaN 325 (979)
|..|+++..+. .|.....++.-=|..+.+|-.+.+.-|-+.|+-+.++.++...|++|.++|-.|+.=
T Consensus 45 lk~L~~lL~~s----~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQk 112 (119)
T PF11698_consen 45 LKKLIKLLDKS----DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQK 112 (119)
T ss_dssp HHHHHHHH-SH----HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC----CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45666666322 345677777777888889998888888889999999999999999999999988753
No 130
>KOG3665|consensus
Probab=65.64 E-value=1.7e+02 Score=37.27 Aligned_cols=186 Identities=20% Similarity=0.208 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHH-hhcCCChhHHhHHHHHHHHhhccchhhHHHhh-----c-
Q psy4858 181 LDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLIS-NCVEKDLDLQFSSARLLEQCLTTENRDHVVEN-----G- 253 (979)
Q Consensus 181 ~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~-~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~-----G- 253 (979)
+..+...|.+ ++++.......+|+.+...--+..+.+ .+...+..-+-+.-+.++-|+.-.++++++.. |
T Consensus 391 l~~LLn~v~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (699)
T KOG3665|consen 391 LKVLLNLVEK---LDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGE 467 (699)
T ss_pred HHHHHHhhhc---ccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHHHhccch
Confidence 3334444444 666655566677776544211111111 22333334444455566666555555544432 2
Q ss_pred hh----HHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcc
Q psy4858 254 LD----KVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-DIETLRHCAGALANLSL 328 (979)
Q Consensus 254 l~----~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl 328 (979)
++ .+.+++ ..+. .+-..+...++|.++=..+.++|..+++.||.+.+...++.- ..+..+.+-+-|.|+|.
T Consensus 468 ~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~ 543 (699)
T KOG3665|consen 468 LGIVLTLLLRIK-LRKI---YWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAE 543 (699)
T ss_pred hHHHHHHHHHHH-hhcc---chhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 22 222233 2222 233344444488888778899999999999999999999976 57888999999999987
Q ss_pred cCCchhHHH-HHhcCCcchhccccccCCc--cchhhHHHHHHHHhcchHH
Q psy4858 329 YGGAENQEA-MIKRKVPVWLFPLAFHNDD--NIKYYACLAIAVLVANTEI 375 (979)
Q Consensus 329 ~~~~~~q~~-mi~~~~~~wL~~La~s~dd--~vr~~A~lAla~Lasn~ei 375 (979)
-.. .+.. |+....--.-|..+.+..+ ..=|+|+..||.+.+|.+-
T Consensus 544 ~~~--~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~ 591 (699)
T KOG3665|consen 544 VLE--LRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDSEK 591 (699)
T ss_pred Hhh--hhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCc
Confidence 662 2222 2222222233444444443 6689999999999999654
No 131
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=64.79 E-value=54 Score=34.40 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=104.2
Q ss_pred cchhHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhh
Q psy4858 175 KRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVEN 252 (979)
Q Consensus 175 ~~~~~~~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~ 252 (979)
.+..++|.++..++... + +. +....+-+.++ .-++.++..+.+....+--.|..+|..+... ..=+..++.
T Consensus 22 ~~r~~al~~L~~l~~~~-~-~~---~~~~~~~~~l~--~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGN-A-PE---DFPPDFVECLR--QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHHHHHHHHHHHHHHH--B---------HHHHHHHH-----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-C-cc---ccHHHHHHHHH--HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 47788999999999977 2 22 22333444444 4557788888888888999999999999643 222333444
Q ss_pred chhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCC-
Q psy4858 253 GLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGG- 331 (979)
Q Consensus 253 Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~- 331 (979)
-++.|++.....++ -+...+.-+|..|+++..- -.+++ ++.+...+....+.+...|+..|..+.-.-+
T Consensus 95 ~l~~Ll~~~~~~~~-----~i~~~a~~~L~~i~~~~~~-~~~~~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSKK-----FIREAANNALDAIIESCSY-SPKIL----LEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHGGG---H-----HHHHHHHHHHHHHHTTS-H---HHH----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHccccH-----HHHHHHHHHHHHHHHHCCc-HHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 47777777733222 4555566688888777661 12221 3466677888899999999999888843333
Q ss_pred --chhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc
Q psy4858 332 --AENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 332 --~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
..-+....-+.+...+..+...++..||.+|--++..+...
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 11111111144567788888888889999887777777555
No 132
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=63.76 E-value=13 Score=40.35 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=66.7
Q ss_pred chhhhhhhHhhhhhhcChhhHHHHhhcC--chHHHHhhhccC----ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcc
Q psy4858 272 EHSRVGTGILEHLFKHSEGTCSDVIGLG--GLDTVLFECRKN----DIETLRHCAGALANLSLYGGAENQEAMIKRKVPV 345 (979)
Q Consensus 272 ~~~r~~~giL~~lfkHSe~t~~~lV~~G--gl~~Ll~l~r~~----d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~ 345 (979)
-..-.+..+|.|||.|.... ..+.+.. -+-..+..+..+ +..++--+|+.+.|+|++-...+-..-.+..+..
T Consensus 125 ~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~ 203 (268)
T PF08324_consen 125 ANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLS 203 (268)
T ss_dssp HHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 33444556899999986554 4444333 344555555555 6788888999999999887333211111222233
Q ss_pred hhcc-cccc-CCccchhhHHHHHHHHhcchHHHHHHHh
Q psy4858 346 WLFP-LAFH-NDDNIKYYACLAIAVLVANTEIEAAVLK 381 (979)
Q Consensus 346 wL~~-La~s-~dd~vr~~A~lAla~Lasn~ei~~~~~~ 381 (979)
-++. +... .|+.+.|-++.||.+|++.+....+.++
T Consensus 204 ~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~ 241 (268)
T PF08324_consen 204 SIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAK 241 (268)
T ss_dssp HHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred HHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence 4444 3333 5668888899999999987666655333
No 133
>PTZ00429 beta-adaptin; Provisional
Probab=62.89 E-value=49 Score=42.14 Aligned_cols=135 Identities=18% Similarity=0.171 Sum_probs=70.0
Q ss_pred CChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHH-Hhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhh--cC
Q psy4858 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHV-VENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFK--HS 288 (979)
Q Consensus 213 Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~I-v~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfk--HS 288 (979)
|-++.|..++...|..|+.+|..+|.++....- +.+ ...+ +.++++..-.|+. -.|-. ||+-|-. .+
T Consensus 179 ~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~-~~l~l~~~~~~~Ll~~L~e~~E-----W~Qi~---IL~lL~~y~P~ 249 (746)
T PTZ00429 179 DFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS-EKIESSNEWVNRLVYHLPECNE-----WGQLY---ILELLAAQRPS 249 (746)
T ss_pred chHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc-hhhHHHHHHHHHHHHHhhcCCh-----HHHHH---HHHHHHhcCCC
Confidence 445666666666666666666666666642222 222 1112 3344433322111 11111 3333311 11
Q ss_pred -hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHH
Q psy4858 289 -EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363 (979)
Q Consensus 289 -e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~ 363 (979)
++....+ +..++..+++.++.|.--|+.++.+++-+..+..+. .+=+++...|+.| .+++.++||.|.
T Consensus 250 ~~~e~~~i-----l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~-~~~~rl~~pLv~L-~ss~~eiqyvaL 318 (746)
T PTZ00429 250 DKESAETL-----LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIE-RCTVRVNTALLTL-SRRDAETQYIVC 318 (746)
T ss_pred CcHHHHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHHHHHh-hCCCccHHHHHH
Confidence 1122233 336777788889999999999999997554222112 1223445667777 356778899653
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=62.75 E-value=68 Score=31.78 Aligned_cols=94 Identities=16% Similarity=0.237 Sum_probs=51.9
Q ss_pred CC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHH
Q psy4858 696 AG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAI 773 (979)
Q Consensus 696 ~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~l 773 (979)
|| +|.......++.++.+|+|+...- ..+..-..++..+...++++|.|+-....++ .........+
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~----------~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~ 143 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQ----------GVEAQTLANFYLALENNLEIIPVINKIDLPS-ADPERVKQQI 143 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCC----------CccHhhHHHHHHHHHcCCCEEEEEECCCCCc-CCHHHHHHHH
Confidence 56 488888889999999999998652 1112222333444567888888866543322 1222223444
Q ss_pred hhhccccc-----ccccHHHHHHHHHHHHhhc
Q psy4858 774 CKFNGVRW-----IHDYQDACVDKLERFMRGE 800 (979)
Q Consensus 774 a~~ngi~w-----~~~yq~a~IdkIvr~I~g~ 800 (979)
++..++.+ ........|++|.+.|...
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVER 175 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhh
Confidence 44444321 1222344566666666544
No 135
>KOG3930|consensus
Probab=62.57 E-value=8.6 Score=43.68 Aligned_cols=50 Identities=28% Similarity=0.492 Sum_probs=46.0
Q ss_pred hHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 524 AEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 524 ~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..|+..|.+|.|.-+.||.|+.+-|. +||++-.|+.-.|++.++..+...
T Consensus 19 ~~YA~~Fv~NRIqk~MLldLnKe~l~-ElGvT~iGDiiaILrh~K~v~~q~ 68 (389)
T KOG3930|consen 19 KKYAKSFVTNRIQKEMLLDLNKETLS-ELGVTAIGDIIAILRHIKAVKSQI 68 (389)
T ss_pred hhHHHHHHhhhhhHHHHhhhhHHHHH-HhchhhhhhHHHHHHHHHHHHHHH
Confidence 36999999999999999999999997 899999999999999999887654
No 136
>KOG3665|consensus
Probab=60.55 E-value=56 Score=41.31 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHhhcC-CChhHHhHHHHHHHHhhc-cchhhHHHhhc-hh-HHHhhhhhccccccccchh
Q psy4858 199 HEIGYSLCNTLRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLT-TENRDHVVENG-LD-KVVRVACVCTKNINSVEHS 274 (979)
Q Consensus 199 ~~~~~~lc~~ir~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~-~lv~la~~~tk~~~~~~~~ 274 (979)
..-....|..+.+.||++.+++.+.+ ...+.+-..-++|.+++. .++++-.-..- +. .+....- .+. ++++.+
T Consensus 499 t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~--~~w-~~~ers 575 (699)
T KOG3665|consen 499 TDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLL--NKW-DSIERS 575 (699)
T ss_pred hcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH--hhc-chhhHH
Confidence 45688899999999999999998886 457789999999999974 45544332222 21 1122221 122 445888
Q ss_pred hhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccC
Q psy4858 275 RVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHN 354 (979)
Q Consensus 275 r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~ 354 (979)
=.+.|||.++-.++|++- +.+. -..+.+.=..+..+.......-.=.+...++ -+--+..+.
T Consensus 576 Y~~~siLa~ll~~~~~~~----~~~~-----------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~---~~~il~~s~ 637 (699)
T KOG3665|consen 576 YNAASILALLLSDSEKTT----ECVF-----------RNSVNELLVEAISRWLTSEIRVINDRSFFPR---ILRILRLSK 637 (699)
T ss_pred HHHHHHHHHHHhCCCcCc----cccc-----------hHHHHHHHHHHhhccCccceeehhhhhcchh---HHHHhcccC
Confidence 889999999988888721 1111 1112222222222221111000001222333 334467788
Q ss_pred CccchhhHHHHHHHHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhh
Q psy4858 355 DDNIKYYACLAIAVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVM 402 (979)
Q Consensus 355 dd~vr~~A~lAla~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~ 402 (979)
.+-.+..|..++.+++.. +++... |..+|....++.+..
T Consensus 638 ~~g~~lWal~ti~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 638 SDGSQLWALWTIKNVLEQNKEYCKL---------VRESNGFELIENIRV 677 (699)
T ss_pred CCchHHHHHHHHHHHHHcChhhhhh---------hHhccchhhhhhcch
Confidence 888899999999999987 777777 888888776655443
No 137
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=60.10 E-value=1.1e+02 Score=36.37 Aligned_cols=122 Identities=12% Similarity=-0.097 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhH
Q psy4858 177 APAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDK 256 (979)
Q Consensus 177 ~~~~~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~ 256 (979)
.+..++.+.+.+..+ -+.+-.+.+++| -.|...+....|+..+.+++..++..+..+|+.-. ... ..+
T Consensus 84 ~~~~~~~L~~~L~d~--~~~vr~aaa~AL-g~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~--------~~~-~~~ 151 (410)
T TIGR02270 84 DALDLRSVLAVLQAG--PEGLCAGIQAAL-GWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR--------HDP-GPA 151 (410)
T ss_pred ChHHHHHHHHHhcCC--CHHHHHHHHHHH-hcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc--------cCh-HHH
Confidence 334455555555433 111222344444 23455566888999999999999998877777621 111 456
Q ss_pred HHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhh
Q psy4858 257 VVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326 (979)
Q Consensus 257 lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl 326 (979)
+..+. + ..+..+-+.+.+.|..+ + ...+++.|...+...|++|.+-|+.+|+-+
T Consensus 152 L~~~L----~-d~d~~Vra~A~raLG~l-~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 152 LEAAL----T-HEDALVRAAALRALGEL-P----------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHh----c-CCCHHHHHHHHHHHHhh-c----------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 66666 3 25678889988888888 3 334555677778888999999999999555
No 138
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=57.29 E-value=71 Score=30.28 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCceEeeccc-CCCC-cchHHHH---HHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCC
Q psy4858 675 LLKVHLELRQFKVFIDVER-LEAG-KFDNNLL---QSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGC 749 (979)
Q Consensus 675 ~L~e~Le~~G~rVFiD~~~-Ie~G-df~~~L~---~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k 749 (979)
.....|+..|+.|.-=... ++.| +|.+-+. ..+..||. +++=|+|= .|.=|+.|...|...|+
T Consensus 20 ~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~--i~~l~gWe----------~S~GA~~E~~~A~~lGl 87 (92)
T PF14359_consen 20 AAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDA--IYMLPGWE----------NSRGARLEHELAKKLGL 87 (92)
T ss_pred HHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCE--EEEcCCcc----------cCcchHHHHHHHHHCCC
Confidence 4667788899888643332 4666 4665554 45778994 44458983 45568999999999999
Q ss_pred eEE
Q psy4858 750 NII 752 (979)
Q Consensus 750 ~II 752 (979)
+|+
T Consensus 88 ~V~ 90 (92)
T PF14359_consen 88 PVI 90 (92)
T ss_pred eEe
Confidence 775
No 139
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.54 E-value=1.5e+02 Score=31.61 Aligned_cols=126 Identities=20% Similarity=0.335 Sum_probs=76.2
Q ss_pred CCCeeEecccCCc-cchHHHHHHHHHhcCCce--Eee-------------cccCCC----------------Ccc-----
Q psy4858 657 NLDVFISYRRSNG-SQLASLLKVHLELRQFKV--FID-------------VERLEA----------------GKF----- 699 (979)
Q Consensus 657 ~yDVFISYRR~Dg-~~~As~L~e~Le~~G~rV--FiD-------------~~~Ie~----------------Gdf----- 699 (979)
...|||+=+-.-| ..++..+.+.|+..||+| |+- ..+|.. |+|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~ 84 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVE 84 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHH
Confidence 4567887665444 678889999999998877 331 112222 211
Q ss_pred ------hHHHHHHHHhCCEEEE-EECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHH
Q psy4858 700 ------DNNLLQSIKQARNFLL-VLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRA 772 (979)
Q Consensus 700 ------~~~L~~aI~~SrvfIv-VLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~ 772 (979)
.+.|.+|.+.+|+.|+ =++|= .-.|.=.++++..++.+++++|-+++.- .--+-+..
T Consensus 85 ~le~i~~~al~rA~~~aDvIIIDEIGpM----------Elks~~f~~~ve~vl~~~kpliatlHrr------sr~P~v~~ 148 (179)
T COG1618 85 GLEEIAIPALRRALEEADVIIIDEIGPM----------ELKSKKFREAVEEVLKSGKPLIATLHRR------SRHPLVQR 148 (179)
T ss_pred HHHHHhHHHHHHHhhcCCEEEEecccch----------hhccHHHHHHHHHHhcCCCcEEEEEecc------cCChHHHH
Confidence 1557777777884332 02222 2234557899999999999999999842 01133455
Q ss_pred Hhhhccccc-c-cccHHHHHHHHHHHHh
Q psy4858 773 ICKFNGVRW-I-HDYQDACVDKLERFMR 798 (979)
Q Consensus 773 la~~ngi~w-~-~~yq~a~IdkIvr~I~ 798 (979)
+-...++.| . -.+.+....+|...+.
T Consensus 149 ik~~~~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 149 IKKLGGVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred hhhcCCEEEEEccchhhHHHHHHHHHhc
Confidence 555667777 3 3445555566655554
No 140
>KOG2171|consensus
Probab=55.19 E-value=47 Score=43.54 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=97.3
Q ss_pred CChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhh-----hc
Q psy4858 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLF-----KH 287 (979)
Q Consensus 213 Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lf-----kH 287 (979)
-++..|++++.+||.+++-.|-+.|+++.-++| -+..|..++..+ .+.++-..+.=.+..++ +-
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-------~l~~L~~i~~~~----~~p~~Rq~aaVl~Rkl~~~~w~~l 72 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTEP-------LLPALAHILATS----ADPQVRQLAAVLLRKLLTKHWSRL 72 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc-------hHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHhhcC
Confidence 357889999999999999999999999876666 234444454222 22232222222333332 13
Q ss_pred ChhhHHHHhhcCchHHHHhhhccCChhHHHH-HHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHH
Q psy4858 288 SEGTCSDVIGLGGLDTVLFECRKNDIETLRH-CAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAI 366 (979)
Q Consensus 288 Se~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~-ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAl 366 (979)
+.+++++|-. -||....+......|| -+..+|-||-+..++ -|+.+.+.||.-+.|.++..|+-|.+-|
T Consensus 73 ~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-----~WPell~~L~q~~~S~~~~~rE~al~il 142 (1075)
T KOG2171|consen 73 SAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-----KWPELLQFLFQSTKSPNPSLRESALLIL 142 (1075)
T ss_pred CHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 6888888877 7777777776555555 467788888777776 6888899999999999999999887666
Q ss_pred HHHhc
Q psy4858 367 AVLVA 371 (979)
Q Consensus 367 a~Las 371 (979)
.++..
T Consensus 143 ~s~~~ 147 (1075)
T KOG2171|consen 143 SSLPE 147 (1075)
T ss_pred Hhhhh
Confidence 66654
No 141
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=54.08 E-value=31 Score=30.78 Aligned_cols=62 Identities=19% Similarity=0.193 Sum_probs=43.7
Q ss_pred CCeeEecccC---CccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccc
Q psy4858 658 LDVFISYRRS---NGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 658 yDVFISYRR~---Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
++|||-+-.+ .....+-.+...|+..|++|.+|... +.+...+..+-+..--|+++++++-+
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~---~~~~k~~~~a~~~g~~~~iiig~~e~ 66 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRE---RKIGKKFREADLRGVPFAVVVGEDEL 66 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCC---cCHhHHHHHHHhCCCCEEEEECCChh
Confidence 4666665444 33567778899999999999998642 35667777776665567888887644
No 142
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=53.44 E-value=37 Score=30.18 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=43.2
Q ss_pred CCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECccc
Q psy4858 658 LDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKA 721 (979)
Q Consensus 658 yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~ 721 (979)
++|||-.-..+....+-.+...|+..|++|-+|...- .+...+..+-+..--++++++++.
T Consensus 2 ~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~---~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 2 VQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNE---KLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred eEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCC---CHHHHHHHHHHcCCCEEEEECcch
Confidence 5777766554446678889999999999999987542 455666666555555677777664
No 143
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=52.98 E-value=48 Score=33.93 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=46.6
Q ss_pred CCce-EeecccCCCC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCC
Q psy4858 684 QFKV-FIDVERLEAG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNF 758 (979)
Q Consensus 684 G~rV-FiD~~~Ie~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f 758 (979)
++.+ |+|. || +|..+...++..++..|+|+... ........+-+..+...++++|-|+-..
T Consensus 69 ~~~i~~iDt----PG~~~f~~~~~~~~~~~D~ailvVda~----------~g~~~~~~~~l~~~~~~~~p~ivvlNK~ 132 (188)
T PF00009_consen 69 NRKITLIDT----PGHEDFIKEMIRGLRQADIAILVVDAN----------DGIQPQTEEHLKILRELGIPIIVVLNKM 132 (188)
T ss_dssp SEEEEEEEE----SSSHHHHHHHHHHHTTSSEEEEEEETT----------TBSTHHHHHHHHHHHHTT-SEEEEEETC
T ss_pred ccceeeccc----ccccceeecccceecccccceeeeecc----------cccccccccccccccccccceEEeeeec
Confidence 4443 5664 77 49999999999999999999986 2345677778888888999988777654
No 144
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=52.21 E-value=1.1e+02 Score=30.00 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.3
Q ss_pred ccchHHHHHHHHHhcCCce-EeecccCC-------------CCcchHHHHHHHHhCCEEEEEECcccch
Q psy4858 669 GSQLASLLKVHLELRQFKV-FIDVERLE-------------AGKFDNNLLQSIKQARNFLLVLTPKALD 723 (979)
Q Consensus 669 g~~~As~L~e~Le~~G~rV-FiD~~~Ie-------------~Gdf~~~L~~aI~~SrvfIvVLSp~~l~ 723 (979)
...++..+.+.|+..|+.+ .+|..+.+ ..+..++|.+.+.+||. |++.||.|..
T Consensus 16 t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~-iI~~sP~y~~ 83 (152)
T PF03358_consen 16 TRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADG-IIFASPVYNG 83 (152)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSE-EEEEEEEBTT
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCe-EEEeecEEcC
Confidence 4779999999999988877 55777751 12344778899999995 7788999875
No 145
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=50.57 E-value=59 Score=32.24 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhc--C---ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 200 EIGYSLCNTLRNC--G---GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 200 ~~~~~lc~~ir~~--G---gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
++.-.+||.|+.. | ++..|.+-++.++..+|..|-.+|+.|..- .=...|+... +..+++++... ...+
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~--~~~~ 96 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS--PKYD 96 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC--CCCC
Confidence 5677899999876 3 466788899999999999999999999742 2446667655 77788888432 1234
Q ss_pred cchhhhhhhHhhhh
Q psy4858 271 VEHSRVGTGILEHL 284 (979)
Q Consensus 271 ~~~~r~~~giL~~l 284 (979)
.++.......+...
T Consensus 97 ~~Vk~kil~ll~~W 110 (133)
T cd03561 97 PKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666644444433
No 146
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=50.43 E-value=56 Score=33.11 Aligned_cols=81 Identities=17% Similarity=0.262 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHh-----cCChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 200 EIGYSLCNTLRN-----CGGMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 200 ~~~~~lc~~ir~-----~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
++.-.+||.|+. ..++-.|.+-+..++..+|..|-.+|+.|..- .=...|+..+ +..+++++.. +.+
T Consensus 23 ~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~----~~~ 98 (142)
T cd03569 23 ASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT----TKN 98 (142)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc----cCC
Confidence 456679999986 23466778889999999999999999999742 2345577778 8999999943 344
Q ss_pred cchhhhhhhHhhhh
Q psy4858 271 VEHSRVGTGILEHL 284 (979)
Q Consensus 271 ~~~~r~~~giL~~l 284 (979)
.++......++...
T Consensus 99 ~~Vk~kil~li~~W 112 (142)
T cd03569 99 EEVRQKILELIQAW 112 (142)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666644444443
No 147
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=49.16 E-value=15 Score=40.99 Aligned_cols=91 Identities=18% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCCCCCCeeEecccCCccchHHHHHHHHHhc--CCceEeeccc---CCCCcchHHHHHHH-HhCCEEEEEECcccchhhc
Q psy4858 653 NPDKNLDVFISYRRSNGSQLASLLKVHLELR--QFKVFIDVER---LEAGKFDNNLLQSI-KQARNFLLVLTPKALDRCM 726 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg~~~As~L~e~Le~~--G~rVFiD~~~---Ie~Gdf~~~L~~aI-~~SrvfIvVLSp~~l~~~~ 726 (979)
...+.||+=+||.++- ..++.++...++.+ ....|.|..- +-+|+...-|.... ..|++.+|.++.+|
T Consensus 173 ~~~~~~DiG~SFaGEA-R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL~~~L~~~Y~~rC~~~~VF~~~~Y----- 246 (329)
T COG4916 173 SSEKPVDSGISFAGEA-RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSLVSTLDPGYDIRCVVTTVFNTGSY----- 246 (329)
T ss_pred ccccccceeeEeehhh-hhHHHHHHHhhhcccCCceeeeechhhccccCccHHHhcccccCceEEEEEEEeCCce-----
Confidence 4568999999999986 78999999999855 5566877543 34556554444432 45888888888887
Q ss_pred ccCCCcCChhHHHHHHHHHhcC--CeEEEE
Q psy4858 727 EDNESECKDWVHREIVAALQSG--CNIIPI 754 (979)
Q Consensus 727 ~~~i~~~SdWV~rEL~~Al~~~--k~IIPV 754 (979)
.+++||+-|-...-+.- ..+.||
T Consensus 247 -----~~K~~c~~E~~~~r~~~~~d~~~rI 271 (329)
T COG4916 247 -----ICKSTCHIEGLEGRLNPILDTGFRI 271 (329)
T ss_pred -----EEeeeeccchhhccccccccccceE
Confidence 46799999987654322 145566
No 148
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=47.97 E-value=30 Score=31.35 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=40.1
Q ss_pred ccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccc
Q psy4858 669 GSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 669 g~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
-.+++..|...|+..|++|.+|.. ...+...|..+-..---|++|++++-+
T Consensus 14 ~~~~a~~l~~~L~~~gi~v~~d~~---~~~~~k~~~~a~~~g~p~~iiiG~~e~ 64 (94)
T PF03129_consen 14 IIEYAQELANKLRKAGIRVELDDS---DKSLGKQIKYADKLGIPFIIIIGEKEL 64 (94)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESS---SSTHHHHHHHHHHTTESEEEEEEHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC---CCchhHHHHHHhhcCCeEEEEECchhH
Confidence 356888999999999999999963 335778888887766668888888743
No 149
>KOG1517|consensus
Probab=47.90 E-value=2.8e+02 Score=36.94 Aligned_cols=208 Identities=15% Similarity=0.128 Sum_probs=124.5
Q ss_pred HHHhHHHHHhhhccCchhccchhHHHHHHHHHHHHhhccCCcchhH--HHHHHHHHHhcCChHHHHHhhcCCChhHHhHH
Q psy4858 156 LRSFILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEI--GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSS 233 (979)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Awa~p~~~~~~--~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~a 233 (979)
|.+|+.++.--. -+-.--++-|.+|+-+.-=+-+.=||-=|||-| +-=.-+.--.-|=+.-.+++++++..|++-.=
T Consensus 454 LTAFevWLd~gs-e~r~PPeQLPiVLQVLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiL 532 (1387)
T KOG1517|consen 454 LTAFEVWLDYGS-ESRTPPEQLPIVLQVLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPIL 532 (1387)
T ss_pred HHHHHHHHHhcc-ccCCChHhcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhH
Confidence 778887776321 111122366666665554455544444444332 11111222234667788999999999999999
Q ss_pred HHHHHHhh-ccchh--hHHHhhchhHHHhhhhhcccccc-ccchhhhhhhHhhhh---hhcChhhHHHHhhcCchHHHHh
Q psy4858 234 ARLLEQCL-TTENR--DHVVENGLDKVVRVACVCTKNIN-SVEHSRVGTGILEHL---FKHSEGTCSDVIGLGGLDTVLF 306 (979)
Q Consensus 234 a~~Le~~~-~~~Nr--~~Iv~~Gl~~lv~la~~~tk~~~-~~~~~r~~~giL~~l---fkHSe~t~~~lV~~Ggl~~Ll~ 306 (979)
|+.=..+| ++.+. |.|-++|-.-.+.+.--+ +. +.+|-..+.=||.-+ |+--.+.|- +.+-+..-+.
T Consensus 533 VFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~---~~~~~EqrtmaAFVLAviv~nf~lGQ~acl---~~~li~iCle 606 (1387)
T KOG1517|consen 533 VFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS---QAIPPEQRTMAAFVLAVIVRNFKLGQKACL---NGNLIGICLE 606 (1387)
T ss_pred HHHHHHHHhcCchhHHHHHhccCceeEEEEecCc---CCCCHHHHHHHHHHHHHHHcccchhHHHhc---cccHHHHHHH
Confidence 99999885 56443 456666755555444211 11 112222222233333 444444442 3333334455
Q ss_pred hhccC-ChhHHHHHHHhhhhhcccCCchhHHHH-HhcCCcchhccccccCCccchhhHHHHHHHHhcc
Q psy4858 307 ECRKN-DIETLRHCAGALANLSLYGGAENQEAM-IKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 307 l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~m-i~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
.+..+ ++..+.-|+.+|.=| |+....-+++ ++-++++-|..+.....+.||+-|..||..+.+|
T Consensus 607 ~lnd~~~pLLrQW~~icLG~L--W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 607 HLNDDPEPLLRQWLCICLGRL--WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HhcCCccHHHHHHHHHHHHHH--hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 55553 466666788888877 6654544555 7888999999999988889999999999999997
No 150
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=45.69 E-value=1.3e+02 Score=29.60 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=40.1
Q ss_pred eEeecccCCCC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCC
Q psy4858 687 VFIDVERLEAG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNF 758 (979)
Q Consensus 687 VFiD~~~Ie~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f 758 (979)
+|+|. || +|.......+..++.+++|+.... ..+.+....+..+...+++|+.|+-..
T Consensus 65 ~liDt----pG~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~i~iv~nK~ 124 (189)
T cd00881 65 NFIDT----PGHEDFSSEVIRGLSVSDGAILVVDANE----------GVQPQTREHLRIAREGGLPIIVAINKI 124 (189)
T ss_pred EEEeC----CCcHHHHHHHHHHHHhcCEEEEEEECCC----------CCcHHHHHHHHHHHHCCCCeEEEEECC
Confidence 35664 56 477788889999999999998763 223455555555555678888887654
No 151
>KOG2062|consensus
Probab=44.75 E-value=24 Score=44.46 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=32.8
Q ss_pred cchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhh
Q psy4858 344 PVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKS 412 (979)
Q Consensus 344 ~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~ 412 (979)
|.-+-.|..|-++-|||=|+.||..-|+.+-...+| ++++|+.. +|..|.|.
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi---------------~lLepl~~--D~~~fVRQ 642 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAI---------------NLLEPLTS--DPVDFVRQ 642 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHH---------------HHHhhhhc--ChHHHHHH
Confidence 344445555666666666666666666666666663 77777776 47766553
No 152
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=43.74 E-value=80 Score=35.20 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=79.7
Q ss_pred ChHHHHHhhcC-CChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhh----hhhhcC
Q psy4858 214 GMDLLISNCVE-KDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILE----HLFKHS 288 (979)
Q Consensus 214 gld~Li~~~~s-~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~----~lfkHS 288 (979)
.++.|+..+.+ ++.-++-.|++.|..+-.. + .+.+++++.+.-. . .. ++-++. ......
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-~-------a~~~l~~~l~~~~---~--~~---a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDE-R-------ALDPLLEALQDED---S--GS---AAAALDAALLDVRAAA 169 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-h-------hhHHHHHHhccch---h--hh---hhhhccchHHHHHHHH
Confidence 67888888884 8888999999988888521 1 1666666662210 0 00 000010 000111
Q ss_pred hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAV 368 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~ 368 (979)
-+.-..+-..-+++.+...++..+..+.+.++.||.-+.-+. ..++.-|+......+..+|.-|+.++..
T Consensus 170 ~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 170 AEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred HHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 111122334446788999999999999999999998884332 3445666777777777888877666554
Q ss_pred H
Q psy4858 369 L 369 (979)
Q Consensus 369 L 369 (979)
.
T Consensus 240 ~ 240 (335)
T COG1413 240 I 240 (335)
T ss_pred c
Confidence 4
No 153
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=43.32 E-value=1.4e+02 Score=33.52 Aligned_cols=101 Identities=18% Similarity=0.126 Sum_probs=80.0
Q ss_pred ChhHHhHHHHHHHHh--hccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchH
Q psy4858 226 DLDLQFSSARLLEQC--LTTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLD 302 (979)
Q Consensus 226 ~~~~q~~aa~~Le~~--~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~ 302 (979)
++.+.++|-++|+-| +|+.-|....+.. +..+++|. ....++.++....-.|.+..--+-+|...--+.||+.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL----~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLL----SPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLS 179 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHh----ccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence 344678889999999 4789999999887 99999999 3334567888888888888888888988999999999
Q ss_pred HHHhhhccC--ChhHHHHHHHhhhhhcccC
Q psy4858 303 TVLFECRKN--DIETLRHCAGALANLSLYG 330 (979)
Q Consensus 303 ~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~ 330 (979)
.|..++++. +.++.=.|.-=|.-.-+.+
T Consensus 180 ~v~~llk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 180 TVCSLLKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHHHHHccccccHHHhHHHHHHHHHHHccc
Confidence 999999987 5566556665555544444
No 154
>KOG4151|consensus
Probab=43.06 E-value=46 Score=42.10 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=93.3
Q ss_pred HHhcCChHHHHHhhcCCChhHHhHHHHHHHH-hhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhh-----
Q psy4858 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQ-CLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILE----- 282 (979)
Q Consensus 209 ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~-~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~----- 282 (979)
+++-||...|+++++-...+-++.+..+|.. +--..+| ...+|++-+. -.++|. -+++.+|
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-------~~~v~~~~~s--~~~~d~----~~~en~E~L~al 566 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-------SYEVVKPLDS--ALHNDE----KGLENFEALEAL 566 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-------hhhhhhhhcc--hhhhhH----HHHHHHHHHHHh
Confidence 5678999999999999998888888777762 1112333 2334444432 122221 3444443
Q ss_pred -hhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHH-H--hcCCcchhccccccCCccc
Q psy4858 283 -HLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAM-I--KRKVPVWLFPLAFHNDDNI 358 (979)
Q Consensus 283 -~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~m-i--~~~~~~wL~~La~s~dd~v 358 (979)
||=.||+..++++++.-+++-+=.+.--..+..+|-++..+-||.+.. -.-++- + +-+.+-|.+.+.. .+...
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~--~~~e~si~e~~~~l~~w~~~~e~-~~E~~ 643 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP--LLYERSIVEYKDRLKLWNLNLEV-ADEKF 643 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH--HHHHHHhhccccCchHHHHHHHh-hhhHH
Confidence 344588999999999999988666666667888888899999996544 211222 1 3455556555554 33333
Q ss_pred hhhHHHHHHHHhcchHHHHH
Q psy4858 359 KYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 359 r~~A~lAla~Lasn~ei~~~ 378 (979)
+--+|.|++..++..+-.++
T Consensus 644 ~lA~a~a~a~I~sv~~n~c~ 663 (748)
T KOG4151|consen 644 ELAGAGALAAITSVVENHCS 663 (748)
T ss_pred hhhccccccchhhcchhhhh
Confidence 44444445544444444333
No 155
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.83 E-value=55 Score=31.69 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred CCCCeeEeccc--CCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccc
Q psy4858 656 KNLDVFISYRR--SNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 656 ~~yDVFISYRR--~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
..++|||-+-. ++....+..+...|+..|++|-+|.. ..+...+..+-+..--++++++++-+
T Consensus 25 ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e~ 89 (121)
T cd00858 25 APIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDTL 89 (121)
T ss_pred CCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCch
Confidence 47788887766 43455777899999999999999864 35667777776666667888887743
No 156
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=41.88 E-value=53 Score=42.15 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=57.4
Q ss_pred ChHHHHHhhcC-----CChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 214 GMDLLISNCVE-----KDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 214 gld~Li~~~~s-----~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
+.++.|..+.. -|+|++|.-+.++.+| .||..++.+.-........-+.......+|.++.| -
T Consensus 85 AtE~~v~~l~~~~~~~~d~e~~~~~~~v~~~~-----------gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v 152 (802)
T PF13764_consen 85 ATEEFVESLEDDSEEEEDPEQEFKIASVLAEC-----------GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-V 152 (802)
T ss_pred cchhhHhhccCccccccCHHHHHHHHHHhhcC-----------CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-h
Confidence 45677777766 3566788887777666 26888888885443322222344444445665533 4
Q ss_pred hhhHHHHhhcCchHHHHhhhcc
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRK 310 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~ 310 (979)
..+|++|++.|+|+.||..++.
T Consensus 153 ~~NR~~Ll~~~al~~LL~~L~~ 174 (802)
T PF13764_consen 153 KVNRRALLELNALNRLLSVLNR 174 (802)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 8999999999999999988763
No 157
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=41.15 E-value=4.4e+02 Score=29.35 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=20.1
Q ss_pred cCCcchhccccccCCccchhhHHHHHHHHhcch
Q psy4858 341 RKVPVWLFPLAFHNDDNIKYYACLAIAVLVANT 373 (979)
Q Consensus 341 ~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ 373 (979)
+..+..|..+....++.||..|.-||.-+....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 334555556666666667777766666666554
No 158
>KOG2734|consensus
Probab=40.97 E-value=1.4e+02 Score=36.20 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhcCCChhHH------hHHHHHHHHhh--ccchhhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 200 EIGYSLCNTLRNCGGMDLLISNCVEKDLDLQ------FSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 200 ~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q------~~aa~~Le~~~--~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
+=|..|-+++|+.+-+.+|++++.-=|..++ .++-.++||++ .++-.+.+|+.| |.=|+.=. ++...-..
T Consensus 163 egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl-~~k~~f~a 241 (536)
T KOG2734|consen 163 EGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRL-KGKAAFDA 241 (536)
T ss_pred ccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHH-hcccCcch
Confidence 3377999999999999999999876554444 34456788886 357888899999 44444421 11111010
Q ss_pred cchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhh---ccCChhHH--HHHHHhhhhh--cccCCchhHHHHHhcCC
Q psy4858 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFEC---RKNDIETL--RHCAGALANL--SLYGGAENQEAMIKRKV 343 (979)
Q Consensus 271 ~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~---r~~d~~~l--r~ca~ALaNl--Al~~~~~~q~~mi~~~~ 343 (979)
--+. +..||.=+...|++++..+-...|+|+|+.-+ ++.||.+- +.-...|.|| +.---++|.++....-+
T Consensus 242 Nk~Y--asEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EG 319 (536)
T KOG2734|consen 242 NKQY--ASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEG 319 (536)
T ss_pred hHHH--HHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcccc
Confidence 0122 23578888899999999999999999998765 45575443 2223333333 22223455566554333
Q ss_pred cchhccccccCCccchhhHHHHHHHHhcchHH
Q psy4858 344 PVWLFPLAFHNDDNIKYYACLAIAVLVANTEI 375 (979)
Q Consensus 344 ~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei 375 (979)
.+ |..|+-......|+.|..+|--+.++.+.
T Consensus 320 lq-Lm~Lmlr~Kk~sr~SalkvLd~am~g~~g 350 (536)
T KOG2734|consen 320 LQ-LMNLMLREKKVSRGSALKVLDHAMFGPEG 350 (536)
T ss_pred HH-HHHHHHHHHHHhhhhHHHHHHHHHhCCCc
Confidence 33 33333322233355554444444444443
No 159
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=40.92 E-value=2e+02 Score=27.29 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=38.8
Q ss_pred CeeEecccCCccchHHHHHHHHHhcCCceEeec--------ccCC-----CC-cchHHHHHHHHhCCEEEEEECcc
Q psy4858 659 DVFISYRRSNGSQLASLLKVHLELRQFKVFIDV--------ERLE-----AG-KFDNNLLQSIKQARNFLLVLTPK 720 (979)
Q Consensus 659 DVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~--------~~Ie-----~G-df~~~L~~aI~~SrvfIvVLSp~ 720 (979)
.||+|....|..++. .+...|...||++|--. ..++ .. +=.++|.+.|++-++-++|-.|+
T Consensus 2 ~vl~s~~~~~k~~~~-~~~~~l~~~G~~l~aT~gT~~~l~~~gi~~~~v~~~~~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 2 TVFISVADRDKPEAV-EIAKRLAELGFKLVATEGTAKYLQEAGIPVEVVNKVSEGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred eEEEEEEcCcHhHHH-HHHHHHHHCCCEEEEchHHHHHHHHcCCeEEEEeecCCCchhHHHHHHcCCeEEEEECCC
Confidence 378999988754444 46666777899886420 1111 00 11256888888888888887775
No 160
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=40.87 E-value=67 Score=38.33 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred hcCCChhHHhHHHHHHHHhh--ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhc
Q psy4858 222 CVEKDLDLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGL 298 (979)
Q Consensus 222 ~~s~~~~~q~~aa~~Le~~~--~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~ 298 (979)
...++.++-..|-|||-|++ ++.-|...++.| ...+++....+....-+.++.=...-||=-+=.-+.+.+.+|++.
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 45677889999999999995 568899999998 888998886653331223443333333333313456678888888
Q ss_pred -CchHHHHhhhccC-----------------ChhHHHHHHHhhhhhcccCCch
Q psy4858 299 -GGLDTVLFECRKN-----------------DIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 299 -Ggl~~Ll~l~r~~-----------------d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
+|++.|+..+.+. +.+.+-.+-..|.|+.++-...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 7888887766441 3445667778888997776443
No 161
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=40.78 E-value=16 Score=37.17 Aligned_cols=78 Identities=18% Similarity=0.175 Sum_probs=50.1
Q ss_pred HHHHhhcCchHHHHhhhccC---------ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhH
Q psy4858 292 CSDVIGLGGLDTVLFECRKN---------DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYA 362 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~r~~---------d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A 362 (979)
.++-++.||+.+|+..+..- +.+.+..|..+|--| |+....-...+-.++++.+|+....+.+..+|..|
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal-~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL-MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH-TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH-HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 46677889999999887763 345666655554333 12222222444578899999999998888999988
Q ss_pred HHHHHHHh
Q psy4858 363 CLAIAVLV 370 (979)
Q Consensus 363 ~lAla~La 370 (979)
+--|+.+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666665
No 162
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=39.48 E-value=32 Score=25.72 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=23.8
Q ss_pred hHHHHhhhccCChhHHHHHHHhhhhhc
Q psy4858 301 LDTVLFECRKNDIETLRHCAGALANLS 327 (979)
Q Consensus 301 l~~Ll~l~r~~d~~~lr~ca~ALaNlA 327 (979)
+|.++.+++..+++|.+-|+.+|.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999999999884
No 163
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=39.04 E-value=3.7e+02 Score=31.62 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=69.4
Q ss_pred hhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchh-hHHHhhc--hhHHHhhhhhcccc
Q psy4858 191 AWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENR-DHVVENG--LDKVVRVACVCTKN 267 (979)
Q Consensus 191 Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr-~~Iv~~G--l~~lv~la~~~tk~ 267 (979)
-||-.++++.+..-+-+++ ++.++|+++-.|+=+++-..-. ..|-+.- +..|+.+++.-+|+
T Consensus 186 ~waentcs~r~~e~l~n~v---------------g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~ke 250 (432)
T COG5231 186 EWAENTCSRRFMEILQNYV---------------GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKE 250 (432)
T ss_pred HHHHhhHHHHHHHHHHhhh---------------hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4776666666655555444 4568999998888777643222 2233332 57788888777776
Q ss_pred ccccchhhhhhhHhhhhhhcC-hhhHHHHhhcC-chHHHHhhhccC--ChhHH
Q psy4858 268 INSVEHSRVGTGILEHLFKHS-EGTCSDVIGLG-GLDTVLFECRKN--DIETL 316 (979)
Q Consensus 268 ~~~~~~~r~~~giL~~lfkHS-e~t~~~lV~~G-gl~~Ll~l~r~~--d~~~l 316 (979)
-+.|...||+.|+-..+ .++...+-.+| ..+.+=.+..+. |.++.
T Consensus 251 ----KV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~ 299 (432)
T COG5231 251 ----KVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELV 299 (432)
T ss_pred ----HHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHH
Confidence 79999999999996533 35666677777 444554555554 66654
No 164
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=38.73 E-value=79 Score=30.92 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=57.4
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhH
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTC 292 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~ 292 (979)
|+++|++++-.++.+|-..|..+|+.+..+ ++-++++... |-+...+ + .|.-+|.+++..+.+ -
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~~--p~l~~L~---------~---~g~~Ll~~~lS~~~G-f 73 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSLR--PSLDHLG---------D---IGSPLLLRFLSTPSG-F 73 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHcC--cHHHHHH---------H---cCHHHHHHHHcchHH-H
Confidence 789999999999999999999999998644 6677776544 3222221 1 122377787777777 4
Q ss_pred HHHhhcCchHHHHhhhccC
Q psy4858 293 SDVIGLGGLDTVLFECRKN 311 (979)
Q Consensus 293 ~~lV~~Ggl~~Ll~l~r~~ 311 (979)
.-|-+.|-++.-+..+...
T Consensus 74 ~~L~~~~~v~~El~~W~~~ 92 (115)
T PF14663_consen 74 RYLNEIGYVEKELDKWFES 92 (115)
T ss_pred HHhcchhHHHHHHHHHHHc
Confidence 4566667777766655543
No 165
>KOG2759|consensus
Probab=38.43 E-value=56 Score=38.91 Aligned_cols=79 Identities=23% Similarity=0.209 Sum_probs=63.6
Q ss_pred chhhHHHhhc---hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHH
Q psy4858 244 ENRDHVVENG---LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCA 320 (979)
Q Consensus 244 ~Nr~~Iv~~G---l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca 320 (979)
||-+..-++- |..|+.+. +..+|+..-.+|.-=+.+...|..+.+.-|...||=..+..++...|++|.+||-
T Consensus 355 eNa~rlnennyellkiL~~lL----e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL 430 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLL----ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL 430 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHH----hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence 4555555554 56777777 4445667777777777788899999999999999999999999999999999999
Q ss_pred Hhhhhh
Q psy4858 321 GALANL 326 (979)
Q Consensus 321 ~ALaNl 326 (979)
.|+.=|
T Consensus 431 lavQ~l 436 (442)
T KOG2759|consen 431 LAVQKL 436 (442)
T ss_pred HHHHHH
Confidence 987544
No 166
>KOG0301|consensus
Probab=37.93 E-value=1.2e+02 Score=38.03 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhchhHHHhhhhhcccc-ccccchhhh
Q psy4858 199 HEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENGLDKVVRVACVCTKN-INSVEHSRV 276 (979)
Q Consensus 199 ~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~Gl~~lv~la~~~tk~-~~~~~~~r~ 276 (979)
|.++.-+|+.-+...-+.-||.++. ++...|..++|||.||.. ..+|.-+... +.-++..+-.+... .+++ +...
T Consensus 575 ~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~-~~~i~~~~~~~~s~~~knl-~ia~ 651 (745)
T KOG0301|consen 575 HSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR-LESILDPVIEASSLSNKNL-QIAL 651 (745)
T ss_pred cchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH-HHHHhhhhhhhhcccchhH-HHHH
Confidence 4678889998888777888888877 888999999999999974 5676665554 55555544444222 2332 3334
Q ss_pred hhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-----ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccc
Q psy4858 277 GTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-----DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 277 ~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-----d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La 351 (979)
+|.+|. + |----++--+.|+...|+.++... |.+-.++...||-||...+ ..+..+.+-.-++|++.-.
T Consensus 652 atlaln-~---sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~--~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 652 ATLALN-Y---SVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD--ASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred HHHHHH-H---HHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc--HHHHHHHHhcCHHHHHHHH
Confidence 455443 2 111111111256666666655543 5556788889999996666 4556666655666665443
No 167
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=37.75 E-value=1.1e+02 Score=32.63 Aligned_cols=79 Identities=15% Similarity=0.166 Sum_probs=57.6
Q ss_pred hhHHHhhhhhc-----cccccccchhhhhhhHhhhhhhcChhhHHHHhhcCc----hHHHHhhhccCChhHHHHHHHhhh
Q psy4858 254 LDKVVRVACVC-----TKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGG----LDTVLFECRKNDIETLRHCAGALA 324 (979)
Q Consensus 254 l~~lv~la~~~-----tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Gg----l~~Ll~l~r~~d~~~lr~ca~ALa 324 (979)
|.+|+++-++| ++. .+.++-.. +|.|+ +-.++.|.-+.+..- |..|+-...+.++.-.+=+|++|=
T Consensus 54 l~~Ll~~F~~g~~~~~n~~-~~~~yla~---vl~Nl-S~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~Ir 128 (192)
T PF04063_consen 54 LDKLLDLFVKGADPSYNKK-DNYDYLAS---VLANL-SQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIR 128 (192)
T ss_pred HHHHHHHHHcCCcccCCCC-cchhHHHH---HHHHh-cCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 77888887772 332 44555555 99999 999999999987654 456777777776666667899999
Q ss_pred hhcccCCchhHHHHH
Q psy4858 325 NLSLYGGAENQEAMI 339 (979)
Q Consensus 325 NlAl~~~~~~q~~mi 339 (979)
||+.+. ..|.++.
T Consensus 129 NccFd~--~~H~~LL 141 (192)
T PF04063_consen 129 NCCFDT--DSHEWLL 141 (192)
T ss_pred HhhccH--hHHHHhc
Confidence 999887 5544444
No 168
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.31 E-value=1.3e+02 Score=30.05 Aligned_cols=62 Identities=18% Similarity=0.371 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhh
Q psy4858 200 EIGYSLCNTLRNCG-----GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVA 261 (979)
Q Consensus 200 ~~~~~lc~~ir~~G-----gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la 261 (979)
++.-.+||.|+... ++..|.+-+.++++.+|..|-.+|+.|+.- .=...|+... +..+++++
T Consensus 19 ~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~ 89 (133)
T smart00288 19 ELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLI 89 (133)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHH
Confidence 45667899887754 466788899999999999999999999732 3446677777 88888888
No 169
>KOG4413|consensus
Probab=35.88 E-value=1.9e+02 Score=33.95 Aligned_cols=190 Identities=16% Similarity=0.229 Sum_probs=118.6
Q ss_pred hhHHHHHHHHHHHHhhccCCcchhHHHHH---------------------HH-----H--HHhcCChHHHHHhhc-CCCh
Q psy4858 177 APAVLDKVNDLMQKAWAVPTHGHEIGYSL---------------------CN-----T--LRNCGGMDLLISNCV-EKDL 227 (979)
Q Consensus 177 ~~~~~~~~~~~~~~Awa~p~~~~~~~~~l---------------------c~-----~--ir~~Ggld~Li~~~~-s~~~ 227 (979)
-...|.++|+-++-|-..|++--+|..+| || . ++-..|+=+||--|. ..|+
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 56778889998888888888766665543 22 0 111233333333333 3445
Q ss_pred hHHhHHHHHHHHh-hccchhhHHHhhc-h--hHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHH
Q psy4858 228 DLQFSSARLLEQC-LTTENRDHVVENG-L--DKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDT 303 (979)
Q Consensus 228 ~~q~~aa~~Le~~-~~~~Nr~~Iv~~G-l--~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~ 303 (979)
+|-..|-.-|..+ +.++--+-|-.+- + -.++|||.+|++- -..|+ ...+-.+|.-|.+.-...-..|-+|-
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndi----aRvRV-leLIieifSiSpesaneckkSGLldl 217 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDI----ARVRV-LELIIEIFSISPESANECKKSGLLDL 217 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhH----HHHHH-HHHHHHHHhcCHHHHhHhhhhhHHHH
Confidence 5555555555555 2345555555555 3 3467888777654 33344 45566788999999999999999999
Q ss_pred HHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccccc--CCccchhhHHHHHHHHhcch
Q psy4858 304 VLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH--NDDNIKYYACLAIAVLVANT 373 (979)
Q Consensus 304 Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s--~dd~vr~~A~lAla~Lasn~ 373 (979)
|...++.+ |+.+.-.|-.-...|+--+ +. .+-..+.|++..+..+-.- +++.-++-|...-.-+-++.
T Consensus 218 LeaElkGteDtLVianciElvteLaete-Hg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgke 288 (524)
T KOG4413|consen 218 LEAELKGTEDTLVIANCIELVTELAETE-HG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKE 288 (524)
T ss_pred HHHHhcCCcceeehhhHHHHHHHHHHHh-hh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcch
Confidence 99999984 8877777776666664322 22 2455688888888777664 34455554543444444443
No 170
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=35.32 E-value=38 Score=32.28 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=48.2
Q ss_pred hhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHh--cCCcchhccccccCCccchhhHHH
Q psy4858 290 GTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIK--RKVPVWLFPLAFHNDDNIKYYACL 364 (979)
Q Consensus 290 ~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~--~~~~~wL~~La~s~dd~vr~~A~l 364 (979)
.-..+|+. +|+..+.-.|..|-++|..||.|++-... ..|+. ..+-.-|+.+...+|++||.-|++
T Consensus 23 ~~l~~Il~-----pVL~~~~D~d~rVRy~AcEaL~ni~k~~~----~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 23 KYLDEILP-----PVLKCFDDQDSRVRYYACEALYNISKVAR----GEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHH-----HHHHHcCCCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 33455554 99999999999999999999999976552 33332 334455677788888888887763
No 171
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=35.30 E-value=54 Score=30.63 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=41.3
Q ss_pred cchhHHHHHhcCC-CchhhhccCHHHHHHHc---CCC-cchhHHHHHHHHHhhhhc
Q psy4858 595 FSIYTYSMLNAGV-DKDSIKALSEEQLICEC---GIH-NSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 595 l~qYtys~l~~Gv-D~~~L~~LT~edL~~~c---gIt-n~~Hr~rIl~AIk~l~~~ 645 (979)
+-+|...|++.|= |.+-|...-++++.+.+ |+. +.+|-.|+..|+++...+
T Consensus 21 Ll~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~~ 76 (82)
T PF04904_consen 21 LLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWSTN 76 (82)
T ss_pred HHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhcC
Confidence 7899999999887 68899999888876654 444 778999999999987654
No 172
>KOG1738|consensus
Probab=34.85 E-value=34 Score=42.26 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=59.3
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
...|..+.+|+..++-++.+|-+.|-.+-+.++-+..+..+.|++ +|+....|+.-|+.|+..|..
T Consensus 6 ~wsp~~va~w~rgldd~m~~Y~~~~e~~~~~g~ql~~~~pq~le~-lg~rrig~qeli~~av~~L~~ 71 (638)
T KOG1738|consen 6 TWTPKQVADWIRGLDDSMQSYLAIFEDALIPGRQLLRLKPQSLET-LGVRRIGHQELILEAVEQLWA 71 (638)
T ss_pred ccCchhhhhHhhcccHhhhHHHHHHHHhhcccccccccChHHHHH-HhhhhhhhHHHHHHHHHHHHH
Confidence 445678899999999899999999999999999999999999996 999999999999988887653
No 173
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=34.27 E-value=78 Score=38.96 Aligned_cols=115 Identities=13% Similarity=0.144 Sum_probs=93.3
Q ss_pred hcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhc
Q psy4858 211 NCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKH 287 (979)
Q Consensus 211 ~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkH 287 (979)
+---.++||..+..|+.-+.+.+-.-+-+..+. +=++...++| ++.++++.. + ||=..+++..=.|.|+.=.
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~----s-KDdaLqans~wvlrHlmyn 503 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM----S-KDDALQANSEWVLRHLMYN 503 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh----c-chhhhhhcchhhhhhhhhc
Confidence 344457999999999999999886666666654 6689999999 999999995 2 3447778888889988666
Q ss_pred Chhh-HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccC
Q psy4858 288 SEGT-CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYG 330 (979)
Q Consensus 288 Se~t-~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~ 330 (979)
+++| .-+++..-|..-+|..|.-.+-.++.+|-..|-|+.-+.
T Consensus 504 cq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 504 CQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred CcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 6655 447888888999999999999999999999999996654
No 174
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.63 E-value=1.2e+02 Score=31.84 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHH
Q psy4858 218 LISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDV 295 (979)
Q Consensus 218 Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~l 295 (979)
|+.++..|...-+-....||++-..+ +--.||--..|..|++=- .. .+.=-...++-+|..|
T Consensus 27 lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~----~~-~~~Is~~~Av~LLGtM----------- 90 (154)
T PF11791_consen 27 LIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGE----IS-SPLISPAEAVELLGTM----------- 90 (154)
T ss_dssp HHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTS----S--BTTB-HHHHHHHHTTS-----------
T ss_pred HHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCC----cc-CCCcCHHHHHHHHhhc-----------
Confidence 34555555544333444555555433 444555444476655432 22 1122234567799999
Q ss_pred hhcCc--hHHHHhhhccCChhHHHHHHHhhhhh-cccC
Q psy4858 296 IGLGG--LDTVLFECRKNDIETLRHCAGALANL-SLYG 330 (979)
Q Consensus 296 V~~Gg--l~~Ll~l~r~~d~~~lr~ca~ALaNl-Al~~ 330 (979)
.|| +.+|+.+|.+.|.++-..||.||.|- =||.
T Consensus 91 --~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 91 --LGGYNVQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp ---SSTTHHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred --cCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 787 78999999999999999999999996 4455
No 175
>KOG2734|consensus
Probab=33.47 E-value=7.5e+02 Score=30.33 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=101.4
Q ss_pred HHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc----chh-------hHHHh
Q psy4858 183 KVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT----ENR-------DHVVE 251 (979)
Q Consensus 183 ~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~----~Nr-------~~Iv~ 251 (979)
.+.++|++--.+-++ --|--.++...|...|+.+|.-.|.++-+.-+-||-.++.. |+- +-.|.
T Consensus 100 dLhd~IQ~mhvlAt~-----PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd 174 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATM-----PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD 174 (536)
T ss_pred cHHHHHHHHHhhhcC-----hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence 455666665555554 23344578999999999999999999999999999999742 332 24456
Q ss_pred hc-hhHHHhhhhhcccccc-ccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHh-hhccC-ChhHHHHHHHhhhhhc
Q psy4858 252 NG-LDKVVRVACVCTKNIN-SVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLF-ECRKN-DIETLRHCAGALANLS 327 (979)
Q Consensus 252 ~G-l~~lv~la~~~tk~~~-~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~-l~r~~-d~~~lr~ca~ALaNlA 327 (979)
.+ +.-||.=......+.| +.+.--+..++++||..-..+.|+++++.|-+.=||. +|..+ -..-+-||.--||=+-
T Consensus 175 g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill 254 (536)
T KOG2734|consen 175 GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL 254 (536)
T ss_pred ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh
Confidence 66 5555544433333333 2244456788999999999999999999987777777 44443 3456677777777664
Q ss_pred ccCCchhHHHH
Q psy4858 328 LYGGAENQEAM 338 (979)
Q Consensus 328 l~~~~~~q~~m 338 (979)
-+++ +|+...
T Consensus 255 q~s~-e~~~~~ 264 (536)
T KOG2734|consen 255 QNSD-ENRKLL 264 (536)
T ss_pred ccCc-hhhhhh
Confidence 4443 244444
No 176
>KOG3930|consensus
Probab=33.29 E-value=37 Score=38.90 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=40.4
Q ss_pred hhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhh
Q psy4858 597 IYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642 (979)
Q Consensus 597 qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l 642 (979)
-|...|+.|.|..+||..|..|.|- ++|||--+-...||+-||..
T Consensus 20 ~YA~~Fv~NRIqk~MLldLnKe~l~-ElGvT~iGDiiaILrh~K~v 64 (389)
T KOG3930|consen 20 KYAKSFVTNRIQKEMLLDLNKETLS-ELGVTAIGDIIAILRHIKAV 64 (389)
T ss_pred hHHHHHHhhhhhHHHHhhhhHHHHH-HhchhhhhhHHHHHHHHHHH
Confidence 6889999999999999999999887 59999999999999877754
No 177
>PRK05433 GTP-binding protein LepA; Provisional
Probab=32.98 E-value=2.3e+02 Score=35.29 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=38.6
Q ss_pred CC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCC
Q psy4858 696 AG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFA 759 (979)
Q Consensus 696 ~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~ 759 (979)
|| +|.....++++.|+.+|+|+...- .....-...+..+.+.++++|+|+-...
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~----------gv~~qt~~~~~~~~~~~lpiIvViNKiD 137 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQ----------GVEAQTLANVYLALENDLEIIPVLNKID 137 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCC----------CCCHHHHHHHHHHHHCCCCEEEEEECCC
Confidence 67 598889999999999999998652 1112233345556677899999977653
No 178
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=32.25 E-value=74 Score=28.04 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 584 LNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 584 l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
+.+||..||++..+|...|-+++ +-|-.++-.+|++ .|| ..=+|.-||...+..+
T Consensus 1 V~tFL~~IGR~~~~~~~kf~~~w---~~lf~~~s~~LK~-~GI-p~r~RryiL~~~ek~r 55 (57)
T PF09597_consen 1 VETFLKLIGRGCEEHAEKFESDW---EKLFTTSSKQLKE-LGI-PVRQRRYILRWREKYR 55 (57)
T ss_pred CHHHHHHHcccHHHHHHHHHHHH---HHHHhcCHHHHHH-CCC-CHHHHHHHHHHHHHHh
Confidence 35799999999999888774433 5666677888995 999 7778999988877544
No 179
>KOG0462|consensus
Probab=31.80 E-value=1e+02 Score=38.16 Aligned_cols=72 Identities=21% Similarity=0.425 Sum_probs=51.0
Q ss_pred CCC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCC--CCCChHHH
Q psy4858 695 EAG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPD--PEQLPADM 770 (979)
Q Consensus 695 e~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd--~e~LPedL 770 (979)
-|| ||.-+..+++..|+=.|+|+..+- ..-....--+-.|++.|..||||+.....|. |+..-..+
T Consensus 132 TPGHvDFs~EVsRslaac~G~lLvVDA~q----------GvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~ 201 (650)
T KOG0462|consen 132 TPGHVDFSGEVSRSLAACDGALLVVDASQ----------GVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQL 201 (650)
T ss_pred CCCcccccceehehhhhcCceEEEEEcCc----------CchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHH
Confidence 378 799999999999999888886541 2223456677889999999999998764443 33444445
Q ss_pred HHHhhh
Q psy4858 771 RAICKF 776 (979)
Q Consensus 771 r~la~~ 776 (979)
..+..+
T Consensus 202 ~~lF~~ 207 (650)
T KOG0462|consen 202 FELFDI 207 (650)
T ss_pred HHHhcC
Confidence 444443
No 180
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=31.68 E-value=2.6e+02 Score=34.83 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=38.6
Q ss_pred CC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCC
Q psy4858 696 AG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFA 759 (979)
Q Consensus 696 ~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~ 759 (979)
|| +|......+++.|+.+|+|+...- ..+..-...+..+.+.++++|+|+-...
T Consensus 78 PG~~dF~~~v~~~l~~aD~aILVvDat~----------g~~~qt~~~~~~~~~~~ipiIiViNKiD 133 (595)
T TIGR01393 78 PGHVDFSYEVSRSLAACEGALLLVDAAQ----------GIEAQTLANVYLALENDLEIIPVINKID 133 (595)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEecCCC----------CCCHhHHHHHHHHHHcCCCEEEEEECcC
Confidence 67 488889999999999999998652 1112233445556678899999977653
No 181
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=31.12 E-value=1.1e+02 Score=36.46 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=77.9
Q ss_pred chhhHHHhh-chhHHHhhhhhcc-----ccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-----C
Q psy4858 244 ENRDHVVEN-GLDKVVRVACVCT-----KNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-----D 312 (979)
Q Consensus 244 ~Nr~~Iv~~-Gl~~lv~la~~~t-----k~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-----d 312 (979)
.+-+-+... |+..|+++|.-.+ ....+.++.+.|.-.|.|+.=+|...++..++.|+.+.++..++.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 555666554 5888888883333 3345679999999999999999999999999999999999999998 7
Q ss_pred hhHHHHHHHhhhhhcccCCchhHHHHH-hcCCcchhcc
Q psy4858 313 IETLRHCAGALANLSLYGGAENQEAMI-KRKVPVWLFP 349 (979)
Q Consensus 313 ~~~lr~ca~ALaNlAl~~~~~~q~~mi-~~~~~~wL~~ 349 (979)
.++...+..-|. |.=+..+..+..++ +.+++..+..
T Consensus 93 ~d~~Fl~~RLLF-LlTa~~~~~~~~L~~e~~~~~~l~~ 129 (446)
T PF10165_consen 93 SDVEFLDSRLLF-LLTALRPDDRKKLIEEHHGVELLTE 129 (446)
T ss_pred hhHHHHHHHHHH-HHhcCChhHHHHHHHHhhhHHHHHH
Confidence 888877766554 44455455555555 4466666554
No 182
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=30.77 E-value=2.1e+02 Score=29.34 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHHh-cCChHHHHHhhc--CCChhHHhHHHHHHHHhhc-cchhhHHHhhchhHHHhhh
Q psy4858 204 SLCNTLRN-CGGMDLLISNCV--EKDLDLQFSSARLLEQCLT-TENRDHVVENGLDKVVRVA 261 (979)
Q Consensus 204 ~lc~~ir~-~Ggld~Li~~~~--s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~Gl~~lv~la 261 (979)
.+|+.|.. +|=++.++.++. +.+..+|..++.+|-..-. .+-|++|+++|+.-|-++.
T Consensus 76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~ 137 (157)
T PF11701_consen 76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELY 137 (157)
T ss_dssp HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 46777764 555677777888 7889999999999987754 4888999999988777777
No 183
>KOG2973|consensus
Probab=30.46 E-value=60 Score=37.46 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccC-CccchhhHHHHHHHHhcchHHHHH
Q psy4858 302 DTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHN-DDNIKYYACLAIAVLVANTEIEAA 378 (979)
Q Consensus 302 ~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~-dd~vr~~A~lAla~Lasn~ei~~~ 378 (979)
.+|..++.-.++ -+.||+||.|+|-+.+-+ +.|++- .+..||..+-.. .+. ---+|..|+||+.+..+-.+
T Consensus 47 k~l~qL~~~~~~--~~~a~~alVnlsq~~~l~--~~ll~~-~~k~l~~~~~~p~~~l-ad~~cmlL~NLs~~~~~~~~ 118 (353)
T KOG2973|consen 47 KDLTQLLKDLDP--AEPAATALVNLSQKEELR--KKLLQD-LLKVLMDMLTDPQSPL-ADLICMLLSNLSRDDDEVAA 118 (353)
T ss_pred HHHHHHccCccc--ccHHHHHHHHHHhhHHHH--HHHHHH-HHHHHHHHhcCcccch-HHHHHHHHHHhccCchHHHH
Confidence 345556665666 889999999998888555 566544 555555555443 233 33456789999999888877
No 184
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.28 E-value=1.4e+02 Score=25.84 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=39.4
Q ss_pred CCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcc
Q psy4858 658 LDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPK 720 (979)
Q Consensus 658 yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~ 720 (979)
.+|||-+-..+....|-.+...|+..|++|.+|... ..+...+..+-...--+++++++.
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~---~~~~~~~~~a~~~~~~~~i~i~~~ 61 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG---RKLKKQFKYADRSGARFAVILGED 61 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC---CCHHHHHHHHHHcCCCEEEEEcHH
Confidence 367777655543456778889999999999987643 234555555555544566777654
No 185
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=29.91 E-value=62 Score=33.93 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=35.4
Q ss_pred HHHhhcCchHHHHhhhccCCh------hHHHHHHHhhhhhcccCCchhHHHHHhcCCcch
Q psy4858 293 SDVIGLGGLDTVLFECRKNDI------ETLRHCAGALANLSLYGGAENQEAMIKRKVPVW 346 (979)
Q Consensus 293 ~~lV~~Ggl~~Ll~l~r~~d~------~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~w 346 (979)
.+-|+.||++.|+...+.++. ++|.|+-+|+.+| |++|.+.|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eL------------MeHg~vsW 52 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVEL------------MEHGIVSW 52 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHH------------HhcCcCch
Confidence 578999999999999999873 8999999988766 56777777
No 186
>PLN03110 Rab GTPase; Provisional
Probab=29.75 E-value=3.3e+02 Score=28.70 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=53.2
Q ss_pred CC-c-chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCh-HHHHH
Q psy4858 696 AG-K-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLP-ADMRA 772 (979)
Q Consensus 696 ~G-d-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LP-edLr~ 772 (979)
+| + |.......++.++.+|+|++..--... ..-..|.. ++......+.+||-|..........+.+ +..+.
T Consensus 69 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~-----~~~~~~~~-~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 142 (216)
T PLN03110 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTF-----DNVQRWLR-ELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQA 142 (216)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEEECCChHHH-----HHHHHHHH-HHHHhCCCCCeEEEEEEChhcccccCCCHHHHHH
Confidence 45 3 666666678999999999986532211 11124533 2333223456666664443222222333 45566
Q ss_pred Hhhhccccccc------ccHHHHHHHHHHHHhhcccC
Q psy4858 773 ICKFNGVRWIH------DYQDACVDKLERFMRGELNS 803 (979)
Q Consensus 773 la~~ngi~w~~------~yq~a~IdkIvr~I~g~l~~ 803 (979)
++...++.+.. ..-++.++.|++.|......
T Consensus 143 l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~~~~ 179 (216)
T PLN03110 143 LAEKEGLSFLETSALEATNVEKAFQTILLEIYHIISK 179 (216)
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 66644443321 23466666666666655433
No 187
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=28.88 E-value=87 Score=31.80 Aligned_cols=59 Identities=27% Similarity=0.560 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCc-hHHHHHHHhcCCChhHHhcCChhhhcc---ccCCCChHHHHHHHHHHHHHH
Q psy4858 512 EDVREWVRQIGF-AEYANNFVESRVDGDLLLQLNEEHLRD---DIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 512 EDVa~WL~~IGL-~eY~~~F~en~IDG~~LL~LTeeDL~~---dLGI~n~ghRKrLlreI~~Lk 571 (979)
..+..||+-+|+ ++..+.+......=+.|+.|++..++. ..|.. .....||.+++..|+
T Consensus 67 P~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~-~EE~rRL~~Al~~LR 129 (129)
T PF13543_consen 67 PSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAR-EEECRRLCRALSNLR 129 (129)
T ss_pred CcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCC-HHHHHHHHHHHHhcC
Confidence 678999999999 578888878888999999999998653 23555 678889999988764
No 188
>PF05536 Neurochondrin: Neurochondrin
Probab=28.71 E-value=2.3e+02 Score=34.84 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=77.7
Q ss_pred chhhh-hhhHhhhhhhcChh---hHHHHhhcCchHHHHhhhccCC----hhHHHHHHHhhhhhcccC---CchhHHHHHh
Q psy4858 272 EHSRV-GTGILEHLFKHSEG---TCSDVIGLGGLDTVLFECRKND----IETLRHCAGALANLSLYG---GAENQEAMIK 340 (979)
Q Consensus 272 ~~~r~-~~giL~~lfkHSe~---t~~~lV~~Ggl~~Ll~l~r~~d----~~~lr~ca~ALaNlAl~~---~~~~q~~mi~ 340 (979)
|-+|. |.-.+-++-+.++. ++.+|-++=|.+=|-.+||++. .+...+...|++=||-+. ....+..|+.
T Consensus 19 D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~ 98 (543)
T PF05536_consen 19 DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVS 98 (543)
T ss_pred cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHH
Confidence 44443 22344455555553 3445778888888999999842 245555555555554444 3333455653
Q ss_pred cCCcchhccccccCCc-c--chhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhc
Q psy4858 341 RKVPVWLFPLAFHNDD-N--IKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMS 403 (979)
Q Consensus 341 ~~~~~wL~~La~s~dd-~--vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~ 403 (979)
+ ++-|+.+..+.++ . .-+|+| |..+++.++-..+ +.+.|.++.+-+++..
T Consensus 99 ~--IP~Lle~l~~~s~~~~v~dalqc--L~~Ias~~~G~~a---------Ll~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 99 R--IPLLLEILSSSSDLETVDDALQC--LLAIASSPEGAKA---------LLESGAVPALCEIIPN 151 (543)
T ss_pred H--HHHHHHHHHcCCchhHHHHHHHH--HHHHHcCcHhHHH---------HHhcCCHHHHHHHHHh
Confidence 3 6677777777776 3 366666 7788899999999 8999999888777777
No 189
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.15 E-value=1.5e+02 Score=30.21 Aligned_cols=80 Identities=11% Similarity=0.231 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhc--C---ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 200 EIGYSLCNTLRNC--G---GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 200 ~~~~~lc~~ir~~--G---gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
++.-.+||.|+.. | .+-.|.+-+.++|+.+|..|-.||+.|..- .=...|+... +..|++++.. ..+
T Consensus 19 ~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~----~~~ 94 (144)
T cd03568 19 GLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND----RVH 94 (144)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc----cCC
Confidence 4566788888873 2 355677888899999999999999999742 3455677777 8889999832 234
Q ss_pred cchhhhhhhHhhh
Q psy4858 271 VEHSRVGTGILEH 283 (979)
Q Consensus 271 ~~~~r~~~giL~~ 283 (979)
+.+......++..
T Consensus 95 ~~Vk~kil~li~~ 107 (144)
T cd03568 95 PTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4666664444433
No 190
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.92 E-value=1.5e+02 Score=28.36 Aligned_cols=65 Identities=14% Similarity=0.315 Sum_probs=43.8
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhh-c--hhHHHhhhhhccccccccchhhhhhhHhhhhhh
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVEN-G--LDKVVRVACVCTKNINSVEHSRVGTGILEHLFK 286 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~-G--l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfk 286 (979)
+++++..+..+|..|++.|...|-|++. .=|+.+... . .+.|.++.. +. . .--|++...|.+|+|
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k-~~~~~~l~~f~~IF~~L~kl~~---D~-d--~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISK-VARGEILPYFNEIFDALCKLSA---DP-D--ENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc---CC-c--hhHHHHHHHHHHHhc
Confidence 5788888899999999999999999962 224455443 2 455555551 22 2 334666668888866
No 191
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.60 E-value=6.5e+02 Score=25.38 Aligned_cols=117 Identities=8% Similarity=0.045 Sum_probs=62.0
Q ss_pred ccCCccchHH-HHHHHHHhcCCceEeecccCCCC-c-chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHH
Q psy4858 665 RRSNGSQLAS-LLKVHLELRQFKVFIDVERLEAG-K-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREI 741 (979)
Q Consensus 665 RR~Dg~~~As-~L~e~Le~~G~rVFiD~~~Ie~G-d-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL 741 (979)
-..|.+++.. .+...|+..||+|.. .| + -.+++.+++.+.+.=++.+|--. .....++ +++
T Consensus 11 ~~gD~H~lG~~iv~~~lr~~G~eVi~------LG~~vp~e~i~~~a~~~~~d~V~lS~~~---------~~~~~~~-~~~ 74 (137)
T PRK02261 11 IGADCHAVGNKILDRALTEAGFEVIN------LGVMTSQEEFIDAAIETDADAILVSSLY---------GHGEIDC-RGL 74 (137)
T ss_pred CCCChhHHHHHHHHHHHHHCCCEEEE------CCCCCCHHHHHHHHHHcCCCEEEEcCcc---------ccCHHHH-HHH
Confidence 3445444443 455677888999964 33 2 45677787777666566776432 2223444 444
Q ss_pred HHHHh-cCCeEEEEecCCCCC-CCCCChHHHHHHhhhcccccccccH-HHHHHHHHHHHhhc
Q psy4858 742 VAALQ-SGCNIIPILDNFAWP-DPEQLPADMRAICKFNGVRWIHDYQ-DACVDKLERFMRGE 800 (979)
Q Consensus 742 ~~Al~-~~k~IIPVl~~f~~p-d~e~LPedLr~la~~ngi~w~~~yq-~a~IdkIvr~I~g~ 800 (979)
...++ .+..=++|+.+...+ ..++|+++.+.+.+ .|+. ..|. ...++.++.+++..
T Consensus 75 ~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~-~G~~--~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 75 REKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKE-MGFD--RVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred HHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHH-cCCC--EEECcCCCHHHHHHHHHHH
Confidence 44444 333225776654322 34456655554444 3543 2222 34556666666544
No 192
>KOG4403|consensus
Probab=27.47 E-value=52 Score=39.20 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=47.9
Q ss_pred HHHhhhcCCCcchhHHHHHhcCCCchhhhccCH---HHHHHHcCCCcchhHHHHH-HHHHhhhhcc
Q psy4858 585 NNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSE---EQLICECGIHNSIHRLRIM-EAIHEIEREW 646 (979)
Q Consensus 585 ~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~---edL~~~cgItn~~Hr~rIl-~AIk~l~~~~ 646 (979)
-+||-. .-+||||-..|-..-|||..|++|.. +.+-+++||+..+||.+|- .|+......+
T Consensus 141 vqWLi~-~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgikd~~hrQKlqLkalDvVLFGp 205 (575)
T KOG4403|consen 141 VQWLIN-DVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIKDRSHRQKLQLKALDVVLFGP 205 (575)
T ss_pred HHHHHH-hcccHHHHHHHHhccCCcccccccccCchHHhhhhhccCchHHHHhhhhhhcceEEecC
Confidence 456654 34699999999999999999999965 6677899999999999984 3555544443
No 193
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=27.28 E-value=5.6e+02 Score=26.82 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcCC------hHHHHHhhcCCChhHHhHHHHHHHHhhccch--hhHHHhhc-hhHHHhhhhhccccccc
Q psy4858 200 EIGYSLCNTLRNCGG------MDLLISNCVEKDLDLQFSSARLLEQCLTTEN--RDHVVENG-LDKVVRVACVCTKNINS 270 (979)
Q Consensus 200 ~~~~~lc~~ir~~Gg------ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~N--r~~Iv~~G-l~~lv~la~~~tk~~~~ 270 (979)
+-+.....+|...-+ +..+...+.+.+..++..++.+|..++..-+ ...+-..+ ++.+++...++-.. .+
T Consensus 112 ~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D-~~ 190 (228)
T PF12348_consen 112 EAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD-AD 190 (228)
T ss_dssp HHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS-S-
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC-CC
Confidence 334444444444444 4555667888999999999999999986533 45555554 67777777777444 33
Q ss_pred cchhhhhhhHhhhhhhcChhhHHHH
Q psy4858 271 VEHSRVGTGILEHLFKHSEGTCSDV 295 (979)
Q Consensus 271 ~~~~r~~~giL~~lfkHSe~t~~~l 295 (979)
.++-..+-..|..|++|-.+.-..+
T Consensus 191 ~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 191 PEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred HHHHHHHHHHHHHHHHHCCHhhccc
Confidence 4555555567888877755544333
No 194
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=26.54 E-value=2e+02 Score=26.05 Aligned_cols=70 Identities=27% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCCh
Q psy4858 656 KNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKD 735 (979)
Q Consensus 656 ~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~Sd 735 (979)
...+|++.|.|.. + .+..+ -+..+..++-+ ...+.+++|+++++.+-|..+..
T Consensus 24 ~~~~v~~~~~r~~-~-~~~~~---~~~~~~~~~~~-----------~~~~~~~~advvilav~p~~~~~----------- 76 (96)
T PF03807_consen 24 KPHEVIIVSSRSP-E-KAAEL---AKEYGVQATAD-----------DNEEAAQEADVVILAVKPQQLPE----------- 76 (96)
T ss_dssp -GGEEEEEEESSH-H-HHHHH---HHHCTTEEESE-----------EHHHHHHHTSEEEE-S-GGGHHH-----------
T ss_pred CceeEEeeccCcH-H-HHHHH---HHhhccccccC-----------ChHHhhccCCEEEEEECHHHHHH-----------
Confidence 3468888777754 1 22222 23345555542 25567789999998888987642
Q ss_pred hHHHHHHHHHhcCCeEEEE
Q psy4858 736 WVHREIVAALQSGCNIIPI 754 (979)
Q Consensus 736 WV~rEL~~Al~~~k~IIPV 754 (979)
+..++ .....++.||=+
T Consensus 77 -v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 77 -VLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp -HHHHH-HHHHTTSEEEEE
T ss_pred -HHHHH-hhccCCCEEEEe
Confidence 56677 666777777654
No 195
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=25.93 E-value=2.3e+02 Score=32.90 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=58.4
Q ss_pred CCCCeeEecccCC---ccchHHHHHHHHHhcCCce-EeecccCCCC-cchHHHHHHHHhCCEEEEEECcccchhhcccCC
Q psy4858 656 KNLDVFISYRRSN---GSQLASLLKVHLELRQFKV-FIDVERLEAG-KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNE 730 (979)
Q Consensus 656 ~~yDVFISYRR~D---g~~~As~L~e~Le~~G~rV-FiD~~~Ie~G-df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i 730 (979)
+.++|.+ |.|+. +..++.. +.....+. |+-.-.++.. .+..++.++++.|+++|+.+.+.++
T Consensus 29 ~~~~V~l-w~~~~~~~~~~~~~~----in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlAVPs~~i-------- 95 (342)
T TIGR03376 29 FEESVRM-WVFEEEIEGRNLTEI----INTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFVIPHQFL-------- 95 (342)
T ss_pred CCceEEE-EEeccccCCHHHHHH----HHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEECChHHH--------
Confidence 4478888 44422 2334433 33322222 3311123433 4667888999999987777766665
Q ss_pred CcCChhHHHHHHHHHhcCCeEEEEecCCCCC--CCCCChHHHHHH
Q psy4858 731 SECKDWVHREIVAALQSGCNIIPILDNFAWP--DPEQLPADMRAI 773 (979)
Q Consensus 731 ~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~p--d~e~LPedLr~l 773 (979)
.++.++|...+..++.||=+..++... ....+.+-++..
T Consensus 96 ----~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~ 136 (342)
T TIGR03376 96 ----EGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE 136 (342)
T ss_pred ----HHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH
Confidence 467788887777777777777776443 222344444443
No 196
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.91 E-value=2.3e+02 Score=28.31 Aligned_cols=78 Identities=15% Similarity=0.270 Sum_probs=51.6
Q ss_pred HHHHHHHhhccCCcchhH--HHHHHHHHHhc-----CChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc
Q psy4858 184 VNDLMQKAWAVPTHGHEI--GYSLCNTLRNC-----GGMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG 253 (979)
Q Consensus 184 ~~~~~~~Awa~p~~~~~~--~~~lc~~ir~~-----Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G 253 (979)
+-++|++|=.-..-..+. .-.+||.|+.. .++..|.+-+..++..+|..|-.+|+.|+.- .=+..|+...
T Consensus 6 ~~~li~kATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 6 ITELIEKATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp HHHHHHHHT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 345555554433333333 44568888775 2355677888999999999999999999732 3345566666
Q ss_pred -hhHHHhhh
Q psy4858 254 -LDKVVRVA 261 (979)
Q Consensus 254 -l~~lv~la 261 (979)
+..+++|+
T Consensus 86 fl~~l~~l~ 94 (140)
T PF00790_consen 86 FLDELVKLI 94 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 78888877
No 197
>KOG3804|consensus
Probab=25.89 E-value=28 Score=41.00 Aligned_cols=73 Identities=26% Similarity=0.396 Sum_probs=53.4
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHcC----chHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 498 VPHKLSQQVPLWSTEDVREWVRQIG----FAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 498 vp~kl~~~V~~WS~EDVa~WL~~IG----L~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+.-+......|+.+||.+|+.... ++..+..|-.-.|+|..|+.++++|+...-|. +-.-+...++.++..
T Consensus 54 ~~~~l~~~p~~W~rd~v~~~l~~~~~~~sl~~~~~~~~~f~m~g~~L~~~te~d~~~r~~~----~gd~l~~~lq~~~~~ 129 (390)
T KOG3804|consen 54 LSATLSVEPSLWSRDDVLEWLSFAEAEFSLPANCIAFPRFDINGNALCSSTEEDFRVRAGT----LGDVLYNSLQEKKEQ 129 (390)
T ss_pred cccccccCcccccccchhHHHHHHHHhccCCcccccccccCCCcchhccccHHHhhhcCCC----ccchhhhhhhhhhcc
Confidence 3445555778999999999999774 66667788888899999999999997644433 334555666666544
Q ss_pred c
Q psy4858 574 A 574 (979)
Q Consensus 574 ~ 574 (979)
.
T Consensus 130 ~ 130 (390)
T KOG3804|consen 130 S 130 (390)
T ss_pred c
Confidence 3
No 198
>KOG2973|consensus
Probab=25.65 E-value=2.1e+02 Score=33.29 Aligned_cols=105 Identities=13% Similarity=0.057 Sum_probs=73.5
Q ss_pred HHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhc----hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhH
Q psy4858 217 LLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENG----LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTC 292 (979)
Q Consensus 217 ~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G----l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~ 292 (979)
-|+..+-++++.||..|+.-|-.++.. --.+-.+| +..|..|+ +. .++++-|.-+|-|+ .-.++.+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~----~~---~~~~~~a~~alVnl-sq~~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLL----KD---LDPAEPAATALVNL-SQKEELR 76 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHc----cC---cccccHHHHHHHHH-HhhHHHH
Confidence 356778889999999998777776644 33333443 56688888 33 34566666799999 7778889
Q ss_pred HHHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccCCch
Q psy4858 293 SDVIGLGGLDTVLFECRKN-DIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 293 ~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
..|+.. +..++++---. ....-+-....|+|||-..+..
T Consensus 77 ~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~ 116 (353)
T KOG2973|consen 77 KKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEV 116 (353)
T ss_pred HHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHH
Confidence 999987 65555554443 3566677778899998776444
No 199
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=25.62 E-value=2.7e+02 Score=29.12 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=24.8
Q ss_pred eEeecccCCCC--cchHHHHHHHHhCCEEEEEECcc
Q psy4858 687 VFIDVERLEAG--KFDNNLLQSIKQARNFLLVLTPK 720 (979)
Q Consensus 687 VFiD~~~Ie~G--df~~~L~~aI~~SrvfIvVLSp~ 720 (979)
+|+|. || +|......++..++.+|+|++..
T Consensus 86 ~~iDt----PG~~~~~~~~~~~~~~~D~~llVvd~~ 117 (203)
T cd01888 86 SFVDC----PGHEILMATMLSGAAVMDGALLLIAAN 117 (203)
T ss_pred EEEEC----CChHHHHHHHHHhhhcCCEEEEEEECC
Confidence 46674 66 48888999999999999999976
No 200
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=25.59 E-value=2.3e+02 Score=25.92 Aligned_cols=63 Identities=17% Similarity=0.251 Sum_probs=43.2
Q ss_pred eeEecccCCc-cchHHHHHHHHHhcCCceEe-eccc------CCC-CcchHHHHHHHHhCCEEEEEECcccc
Q psy4858 660 VFISYRRSNG-SQLASLLKVHLELRQFKVFI-DVER------LEA-GKFDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 660 VFISYRR~Dg-~~~As~L~e~Le~~G~rVFi-D~~~------Ie~-Gdf~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
+|.|.++.-| ..++.+|...|.++|.+|.+ |.+. |.. +.+.+.....+..|+.+|+++.|...
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHH
Confidence 4788888776 56788999999989988865 3221 111 22444555777888888888887754
No 201
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=25.57 E-value=5.6e+02 Score=25.22 Aligned_cols=94 Identities=10% Similarity=0.153 Sum_probs=48.2
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCC-CCCChHHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPD-PEQLPADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd-~e~LPedLr~la~~n 777 (979)
|.......+++++.+|+|++.....+. ..-..|.. ++......+.++|-|.-....++ ....++..+.++...
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~-----~~~~~~~~-~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSF-----ENIRNWMR-NIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEY 138 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHH-----HhHHHHHH-HHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHc
Confidence 655555678999999999976532221 11223432 33322223556666654433332 223556666666654
Q ss_pred cccccc------ccHHHHHHHHHHHHh
Q psy4858 778 GVRWIH------DYQDACVDKLERFMR 798 (979)
Q Consensus 778 gi~w~~------~yq~a~IdkIvr~I~ 798 (979)
+..+.. ..-+++++.|++.+.
T Consensus 139 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 139 GIKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 433221 224555566655553
No 202
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=25.24 E-value=60 Score=38.05 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=29.5
Q ss_pred hhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCC
Q psy4858 277 GTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKND 312 (979)
Q Consensus 277 ~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d 312 (979)
....|+.+|.| .++|...|+.||++.||.+|..+.
T Consensus 340 v~rFLea~fsN-~~~C~~FVe~GGie~LLdLl~LPs 374 (379)
T PF06025_consen 340 VVRFLEAFFSN-SDHCREFVEKGGIELLLDLLTLPS 374 (379)
T ss_pred HHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCC
Confidence 34478888865 599999999999999999998763
No 203
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=25.17 E-value=2.2e+02 Score=36.56 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhh
Q psy4858 200 EIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTG 279 (979)
Q Consensus 200 ~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~g 279 (979)
+++--.||+|++. ++.+|.++|+.|=|.|.-+=+. .+...-+.+|.++. +. ....+-|.+.=
T Consensus 88 ~~~lLavNti~kD---------l~d~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l----~d-~~ayVRk~Aal 149 (757)
T COG5096 88 ELALLAVNTIQKD---------LQDPNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLL----TD-PHAYVRKTAAL 149 (757)
T ss_pred HHHHHHHHHHHhh---------ccCCCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHc----cC-CcHHHHHHHHH
Confidence 5566677777654 7899999999999988766322 23333356666666 44 44577788777
Q ss_pred HhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhh
Q psy4858 280 ILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326 (979)
Q Consensus 280 iL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl 326 (979)
++.+||.-+.+-|. ++|-++.+-.++..+||.+.+.|..+|+.|
T Consensus 150 av~kly~ld~~l~~---~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 150 AVAKLYRLDKDLYH---ELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHhcCHhhhh---cccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 88899988877654 578899999999999999999999999999
No 204
>KOG0946|consensus
Probab=24.25 E-value=1.7e+03 Score=29.26 Aligned_cols=222 Identities=18% Similarity=0.212 Sum_probs=136.1
Q ss_pred hhhHHHHHHHHHhhHHHHH---hhhhhhHHHHhhhhhHHHHHHHhHHHHHhhhccCc--hhccchhHHHHHHHHHHHHhh
Q psy4858 118 QQNIDAIIAKYTGCLENIV---QDSVKLFAIKVFSMKEVFILRSFILYLQVMQNFSS--DQEKRAPAVLDKVNDLMQKAW 192 (979)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Aw 192 (979)
++.++.+|.|-|.+++++- .+---+-++|-||-|--.-.-+ +.|+.+-+ ..|-+-|+.+.-+.+.+.-..
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga-----~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA-----QGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 5567777888888777642 1122344677776552211111 11222111 122344444444444433322
Q ss_pred c---------cCCcchhHHHHHHHHH-HhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc---cchhhHHHhh--chhHH
Q psy4858 193 A---------VPTHGHEIGYSLCNTL-RNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT---TENRDHVVEN--GLDKV 257 (979)
Q Consensus 193 a---------~p~~~~~~~~~lc~~i-r~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~---~~Nr~~Iv~~--Gl~~l 257 (979)
. =++-..++|.-+.+.+ -..|-+.+|+.-+...|--|+..|..||+.++. ++-++-|... |+.++
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 2 2233345555555554 457888999999999999999999999999974 3778877776 68899
Q ss_pred HhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhh-cCchHHHHhhhccC---C-hhHHHHHHHhhhhhcccCCc
Q psy4858 258 VRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIG-LGGLDTVLFECRKN---D-IETLRHCAGALANLSLYGGA 332 (979)
Q Consensus 258 v~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~-~Ggl~~Ll~l~r~~---d-~~~lr~ca~ALaNlAl~~~~ 332 (979)
|.|.. +++ +.-|+..=.|..=...+...-++||. ..+...|+...+.. | --|..-|.--|-||-=|. .
T Consensus 172 mdlL~---Dsr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N-~ 244 (970)
T KOG0946|consen 172 MDLLR---DSR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN-I 244 (970)
T ss_pred HHHHh---hhh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC-c
Confidence 98883 443 34444322333222555555555554 55667777776653 4 368889999999995554 6
Q ss_pred hhHHHHHhcCCcchhcccc
Q psy4858 333 ENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 333 ~~q~~mi~~~~~~wL~~La 351 (979)
+||.-.-+-+-++.|..|.
T Consensus 245 SNQ~~FrE~~~i~rL~klL 263 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLL 263 (970)
T ss_pred chhhHHhccccHHHHHhhc
Confidence 8999999988888887443
No 205
>KOG3791|consensus
Probab=23.16 E-value=43 Score=41.09 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHH
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~ 568 (979)
..++-.||+..++..|.+.|.. .+=..++.|++.+|. ..|+...|.|++++.+..
T Consensus 475 ~~~ip~WLkslrlhKyt~~~~~--t~~~e~l~ls~~~l~-~~Gv~a~g~~~~~L~~~~ 529 (569)
T KOG3791|consen 475 RIEIPEWLKSLRLHKYTNALKS--TTWFELLILSDMKLQ-HVGVLALGARRKLLKAFS 529 (569)
T ss_pred cccchHHHHhccchhhhccccC--ccHHHhhccchhhcc-cchhhhhhHHHhhhcccc
Confidence 3456789999999999999977 888889999999997 589999999999887654
No 206
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=22.96 E-value=2.8e+02 Score=29.46 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=68.3
Q ss_pred chHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhh------cccCCCcCChhHHHHHHHH
Q psy4858 671 QLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRC------MEDNESECKDWVHREIVAA 744 (979)
Q Consensus 671 ~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~------~~~~i~~~SdWV~rEL~~A 744 (979)
.+...|++.+...++.+..+...........+.......++.+|+++.+.+-+-. ..++-+-.-++...||..+
T Consensus 47 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~ 126 (227)
T PF01915_consen 47 TPLDALKQRFGNAGVVVPEGGDAVDDDEGIDEAVAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSDLALPANQQELIKA 126 (227)
T ss_dssp HHHHHHHHHHHTTSEEEECCCCCCCCCSCHHHHHHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBCCCHHHHHHHH
T ss_pred cHHhhhccccCCCceEEeeeccccccccchHHHHHHhhcCCEEEEeccccccccccccccccCCcccccchhhHHHHHHH
Confidence 3444555555555655544333333444567788889999999999984432210 0111223334567777776
Q ss_pred Hhc-CCeEEEEec-CCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHHHHHhhcccC
Q psy4858 745 LQS-GCNIIPILD-NFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLERFMRGELNS 803 (979)
Q Consensus 745 l~~-~k~IIPVl~-~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~g~l~~ 803 (979)
+.. ++++|-|+. +-+|- ...|.+ +..++-|.+..-....+-+++.|.|+.+.
T Consensus 127 v~~~~~~~Ivvv~~~~P~~-l~~~~~------~~~Ail~~~~~g~~~~~A~advL~G~~~P 180 (227)
T PF01915_consen 127 VAAAGKKVIVVVNSGNPYD-LDPWED------NVDAILAAYYPGQEGGEAIADVLFGDVNP 180 (227)
T ss_dssp HHHHHSCEEEEEE-SSGGC-GHCCHH------C-SEEEEEES-GSBHHHHHHHHHTTSS--
T ss_pred HHHhcCCeEEEEecCCccc-cHHHHh------hhceEeeccccchHHHHHHHHHHcCCCCC
Confidence 554 366666544 31111 112332 33455555555556678889999998655
No 207
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.94 E-value=2.9e+02 Score=26.63 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred ccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHh-c
Q psy4858 669 GSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-S 747 (979)
Q Consensus 669 g~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~-~ 747 (979)
+.-++..+++.++.+|+.+-+..-.+ .++...+.+.| +++++|.. .|-.+++..... .
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a~~~------~e~~~~~~~~D--vill~PQv-------------~~~~~~i~~~~~~~ 71 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAAGAY------GSHYDMIPDYD--LVILAPQM-------------ASYYDELKKDTDRL 71 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeeH------HHHHHhccCCC--EEEEcChH-------------HHHHHHHHHHhhhc
Confidence 35678899999999999876653321 34556677888 88999985 577788887654 4
Q ss_pred CCeEEEE
Q psy4858 748 GCNIIPI 754 (979)
Q Consensus 748 ~k~IIPV 754 (979)
|++|..|
T Consensus 72 ~ipv~~I 78 (99)
T cd05565 72 GIKLVTT 78 (99)
T ss_pred CCCEEEe
Confidence 7777655
No 208
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.92 E-value=4.6e+02 Score=30.81 Aligned_cols=90 Identities=13% Similarity=0.161 Sum_probs=53.5
Q ss_pred CCCCeeEecccCCccchHHHHHHHHHhcCCce-EeecccCCCC-cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcC
Q psy4858 656 KNLDVFISYRRSNGSQLASLLKVHLELRQFKV-FIDVERLEAG-KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESEC 733 (979)
Q Consensus 656 ~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rV-FiD~~~Ie~G-df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~ 733 (979)
..++|.+ |.|+. ...-..+.+.+...+.+. |+-.-.++.. ....++.++++.|+++|+.+.|.++
T Consensus 40 ~~~~V~l-w~~~~-~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~l----------- 106 (365)
T PTZ00345 40 FHNEVRM-WVLEE-IVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVIPHQFL----------- 106 (365)
T ss_pred CCCeEEE-EEecc-cccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEcChHHH-----------
Confidence 3467888 44432 212223445555443322 3322235544 4567788899999988888888876
Q ss_pred ChhHHHHHHH--HHhcCCeEEEEecCCC
Q psy4858 734 KDWVHREIVA--ALQSGCNIIPILDNFA 759 (979)
Q Consensus 734 SdWV~rEL~~--Al~~~k~IIPVl~~f~ 759 (979)
+++.++|.. .+..+..||=+..++.
T Consensus 107 -~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 107 -ESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred -HHHHHHhccccccCCCCEEEEEeCCcc
Confidence 357778876 4555556676766763
No 209
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.69 E-value=2.3e+02 Score=26.65 Aligned_cols=61 Identities=18% Similarity=0.367 Sum_probs=44.2
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccc---cCCC-ChHHHHHHHHHHHHHHhh
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDD---IGIH-NGIQRRRFERELQNLKKM 573 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~d---LGI~-n~ghRKrLlreI~~Lk~~ 573 (979)
++..=|++-.|-+|.+.|.+.|-|- ..|+.+.++++..- .||. +|.|-+||.+++++....
T Consensus 11 qly~vLqrAnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~~ 76 (82)
T PF04904_consen 11 QLYRVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWSTN 76 (82)
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhcC
Confidence 4445577889999999999876554 44666666664322 3887 588999999999887653
No 210
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=21.64 E-value=2.2e+02 Score=30.11 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHhcCCce-EeecccCCCCc---------chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHH
Q psy4858 670 SQLASLLKVHLELRQFKV-FIDVERLEAGK---------FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHR 739 (979)
Q Consensus 670 ~~~As~L~e~Le~~G~rV-FiD~~~Ie~Gd---------f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~r 739 (979)
..++..+.+.|...|+.| .+|..++++++ -...+.+.|++||. |++.||.|......- +-+-=||+.
T Consensus 17 ~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~-iIi~tP~Y~~s~pg~-LKn~iD~l~- 93 (191)
T PRK10569 17 SALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADG-LIVATPVYKASFSGA-LKTLLDLLP- 93 (191)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCE-EEEECCccCCCCCHH-HHHHHHhCC-
Confidence 557777888888888888 66887776532 22467789999995 778899886431000 000113442
Q ss_pred HHHHHHhcCCeEEEEecC
Q psy4858 740 EIVAALQSGCNIIPILDN 757 (979)
Q Consensus 740 EL~~Al~~~k~IIPVl~~ 757 (979)
...=.+|.++||-..
T Consensus 94 ---~~~l~~K~v~iiat~ 108 (191)
T PRK10569 94 ---ERALEHKVVLPLATG 108 (191)
T ss_pred ---hhhhCCCEEEEEEec
Confidence 122347888888553
No 211
>KOG4151|consensus
Probab=21.60 E-value=1.5e+02 Score=37.78 Aligned_cols=145 Identities=20% Similarity=0.148 Sum_probs=90.7
Q ss_pred ccchhhHHHhhchhHHHhhhhhccccccccchhhhh-hhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHH
Q psy4858 242 TTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVG-TGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCA 320 (979)
Q Consensus 242 ~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~-~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca 320 (979)
+..|+.+|++++..+++.+--..... -++.-. -.++|.+=..-..-+-++|+.||..+|+.++.-+.+.-..|..
T Consensus 450 ~~~n~~~v~~~r~rk~~~~~~~~~~~----svakt~~~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~ 525 (748)
T KOG4151|consen 450 SPLNWGNVHMSRARKRLSLDEDPSCE----SVAKTVSWAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWY 525 (748)
T ss_pred cccccchHHHHHHHHhhccCcchhhh----HHHHHHHHHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHH
Confidence 45899999998877665543111110 000000 1145555233445677899999999999999999999999999
Q ss_pred Hhhh-hhcccCCchhHHHHHhcCCcchhccccccCCc--cchhhHHHHHHHHhcchH-HHHHHHhhhhHHHHHhhCCccc
Q psy4858 321 GALA-NLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD--NIKYYACLAIAVLVANTE-IEAAVLKSVQEAAVLKSGTLDL 396 (979)
Q Consensus 321 ~ALa-NlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd--~vr~~A~lAla~Lasn~e-i~~~~~~~~~~~~V~~sG~l~l 396 (979)
-||+ =++.-| ...++ +..++.-+-+.|. .-.|-+.+|+.|||+-.+ ..-+ |.+.-.++.
T Consensus 526 ~aL~~~i~f~~-~~~~~-------v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~---------i~ke~~~~~ 588 (748)
T KOG4151|consen 526 HALAGKIDFPG-ERSYE-------VVKPLDSALHNDEKGLENFEALEALTNLASISESDRQK---------ILKEKALGK 588 (748)
T ss_pred HHHhhhcCCCC-Cchhh-------hhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHH---------HHHHhcchh
Confidence 9999 333322 11111 2223333344443 557889999999998744 4455 666666677
Q ss_pred hHhhhhcCChh
Q psy4858 397 VEPFVMSHSPS 407 (979)
Q Consensus 397 v~~~~~~~~P~ 407 (979)
++.+...-+|.
T Consensus 589 ie~~~~ee~~~ 599 (748)
T KOG4151|consen 589 IEELMTEENPA 599 (748)
T ss_pred hHHHhhcccHH
Confidence 77766665554
No 212
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.86 E-value=1.7e+02 Score=29.84 Aligned_cols=63 Identities=14% Similarity=0.277 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHhhcCCChhHHhHHHHHHHHhhc---cchhhHHHhhc-hhHHHhhhh
Q psy4858 200 EIGYSLCNTLRNCG-----GMDLLISNCVEKDLDLQFSSARLLEQCLT---TENRDHVVENG-LDKVVRVAC 262 (979)
Q Consensus 200 ~~~~~lc~~ir~~G-----gld~Li~~~~s~~~~~q~~aa~~Le~~~~---~~Nr~~Iv~~G-l~~lv~la~ 262 (979)
++.-.+||.|...+ ++..|.+-+.+++..+|..|-.+|+.|.. ..=...|+..+ +..+++++.
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~ 91 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVS 91 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhc
Confidence 45667888887643 36678888999999999999999999974 24557788888 888999884
No 213
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=20.57 E-value=99 Score=31.94 Aligned_cols=65 Identities=22% Similarity=0.170 Sum_probs=44.5
Q ss_pred hHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCc--chhccccccCCccchhhHHHHHHHHhcc
Q psy4858 301 LDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVP--VWLFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 301 l~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~--~wL~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
++.+...|+..++.+.+.|...|+.|...+ |++.+.. ..+..+....++.||-.|...+..+...
T Consensus 27 ~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d-------~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 27 LPNLYKCLRDEDPLVRKTALLVLSHLILED-------MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-------ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 567888899999999999999999997765 3333332 2334444445557777776666555444
No 214
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=20.42 E-value=1.9e+02 Score=25.94 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=35.8
Q ss_pred cchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccc
Q psy4858 670 SQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 670 ~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
...+..+...|+..|++|.+|.+.- .+...+..+-+..--|+++++++-+
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~~~---~l~k~i~~a~~~g~~~~iiiG~~e~ 66 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDRNE---RPGVKFADADLIGIPYRIVVGKKSA 66 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCC---CcccchhHHHhcCCCEEEEECCchh
Confidence 4567788999999999999987543 3555566665555557788887644
No 215
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=20.36 E-value=3.6e+02 Score=29.13 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=43.2
Q ss_pred HhcCCce-EeecccCCCC--cchHHHHHHHH--hCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEe
Q psy4858 681 ELRQFKV-FIDVERLEAG--KFDNNLLQSIK--QARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPIL 755 (979)
Q Consensus 681 e~~G~rV-FiD~~~Ie~G--df~~~L~~aI~--~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl 755 (979)
+..|+.+ |+|. || +|......++. .++..++|+..+- ...+...+-+..+.+.++++|.|+
T Consensus 80 ~~~~~~i~liDt----pG~~~~~~~~~~~~~~~~~D~~llVvda~~----------g~~~~d~~~l~~l~~~~ip~ivvv 145 (224)
T cd04165 80 EKSSKLVTFIDL----AGHERYLKTTLFGLTGYAPDYAMLVVAANA----------GIIGMTKEHLGLALALNIPVFVVV 145 (224)
T ss_pred eeCCcEEEEEEC----CCcHHHHHHHHHhhcccCCCEEEEEEECCC----------CCcHHHHHHHHHHHHcCCCEEEEE
Confidence 3445554 5674 67 48777777775 6889899887541 223455666777788899988886
Q ss_pred cCC
Q psy4858 756 DNF 758 (979)
Q Consensus 756 ~~f 758 (979)
-..
T Consensus 146 NK~ 148 (224)
T cd04165 146 TKI 148 (224)
T ss_pred ECc
Confidence 553
No 216
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=20.21 E-value=1.3e+02 Score=29.96 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=31.3
Q ss_pred HHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCC
Q psy4858 703 LLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNF 758 (979)
Q Consensus 703 L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f 758 (979)
+.++++.+|++++|+....-. .....++.+.+.. ...++++|.|+-..
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~-------~~~~~~i~~~l~~-~~~~~p~ilVlNKi 49 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPM-------GTRCKHVEEYLKK-EKPHKHLIFVLNKC 49 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCc-------cccCHHHHHHHHh-ccCCCCEEEEEEch
Confidence 678999999999999865310 1223455555553 24468888887654
No 217
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.19 E-value=1.4e+02 Score=31.79 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=51.6
Q ss_pred chhHHHHHhcCCCchhhhccCHHHHHHHcCCCcch-hHHHHHHHHHhhhhccccccC--CCCCCC----CCeeEecccC-
Q psy4858 596 SIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSI-HRLRIMEAIHEIEREWNKEYE--DNPDKN----LDVFISYRRS- 667 (979)
Q Consensus 596 ~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~-Hr~rIl~AIk~l~~~~~~~~~--~~~~~~----yDVFISYRR~- 667 (979)
+.|...| .|.|...+-.++++++...+.-...+ ||.+|..+|..-+.-.....+ +.-.+. ..+-..|...
T Consensus 53 ~~fr~aF--~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~esf~~ylW~fv~~~Pi~~~~~~~~ 130 (179)
T TIGR00624 53 ENYRRAF--SGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQNDLVEFLWSFVNHQPQPRQRPTDS 130 (179)
T ss_pred HHHHHHH--cCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHccHHHHHHhccCCCCccCCccccc
Confidence 4565555 89999999999999998766555444 788887766643321100000 000000 0001111111
Q ss_pred ---CccchHHHHHHHHHhcCCce
Q psy4858 668 ---NGSQLASLLKVHLELRQFKV 687 (979)
Q Consensus 668 ---Dg~~~As~L~e~Le~~G~rV 687 (979)
....+...|...|..+|++-
T Consensus 131 ~~p~~t~~S~~lskdLKkrGfkF 153 (179)
T TIGR00624 131 EIPSSTPESKAMSKELKKRGFRF 153 (179)
T ss_pred cCCCCCHHHHHHHHHHHHcCCee
Confidence 12456788999999999863
No 218
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=20.09 E-value=6.7e+02 Score=28.02 Aligned_cols=151 Identities=19% Similarity=0.176 Sum_probs=92.6
Q ss_pred hHHHH-HhhcCCChhHHhHHHHHHHHh-hccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhh-hhhcChhh
Q psy4858 215 MDLLI-SNCVEKDLDLQFSSARLLEQC-LTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEH-LFKHSEGT 291 (979)
Q Consensus 215 ld~Li-~~~~s~~~~~q~~aa~~Le~~-~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~-lfkHSe~t 291 (979)
++-|| --+++++..+|..|.+||+-| +.+. .++...+..+.+.+.++ +.++.-.+..++-. +-.|--+.
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~~~~-----~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAKEHLPLFLQALQKD-----DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCchh
Confidence 44444 556778899999999999998 4443 55666666677766332 22444444443332 22343222
Q ss_pred HHHHh-------hcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCC--ccchhhH
Q psy4858 292 CSDVI-------GLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHND--DNIKYYA 362 (979)
Q Consensus 292 ~~~lV-------~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~d--d~vr~~A 362 (979)
-..-- ...-++.+...+.+.+++++..|+.+++=|-+.|.-.. .+.+...|+.+-|++. ++.+..-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 22222 23445678888888899999999999999999885554 2444556666666555 3445555
Q ss_pred HHH--HHHHhcchHHHHH
Q psy4858 363 CLA--IAVLVANTEIEAA 378 (979)
Q Consensus 363 ~lA--la~Lasn~ei~~~ 378 (979)
||+ +-+.|+...-..+
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~ 192 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQE 192 (298)
T ss_pred HHHHHHHHHHcCCHHHHH
Confidence 554 4466666443333
Done!