Query psy4858
Match_columns 979
No_of_seqs 405 out of 996
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tad_C Liprin-beta-1; protein 100.0 1.1E-30 3.6E-35 278.7 2.6 232 499-747 8-243 (265)
2 3tac_B Liprin-alpha-2; transfe 99.9 3.9E-26 1.3E-30 247.7 3.2 226 504-746 34-313 (334)
3 3sei_A Caskin-1; SAM domain, p 99.9 5.4E-24 1.8E-28 210.3 11.4 130 511-644 10-140 (149)
4 3jrn_A AT1G72930 protein; TIR 99.9 1.9E-23 6.3E-28 211.7 5.6 142 653-805 4-174 (176)
5 3ozi_A L6TR; plant TIR domain, 99.9 8.9E-23 3.1E-27 210.7 7.2 143 651-803 29-202 (204)
6 2kiv_A Ankyrin repeat and ster 99.9 1.8E-22 6.3E-27 198.7 8.0 133 506-641 9-147 (148)
7 3tpo_A Importin subunit alpha- 99.8 6.9E-20 2.3E-24 209.2 15.7 294 189-494 139-447 (529)
8 3ul1_B Importin subunit alpha- 99.8 9.1E-20 3.1E-24 207.8 15.5 323 189-530 120-457 (510)
9 3nmw_A APC variant protein; AR 99.8 7E-20 2.4E-24 202.4 10.8 281 212-503 31-341 (354)
10 3nmz_A APC variant protein; pr 99.8 1.5E-19 5.3E-24 206.3 13.7 265 228-502 163-456 (458)
11 3l6x_A Catenin delta-1; cateni 99.8 2E-19 6.7E-24 210.9 14.5 311 189-524 67-490 (584)
12 3h16_A TIR protein; bacteria T 99.8 5.3E-20 1.8E-24 181.0 5.3 96 653-758 16-116 (154)
13 1xm9_A Plakophilin 1; armadill 99.8 1.1E-18 3.9E-23 196.7 13.1 281 205-495 36-448 (457)
14 4hxt_A De novo protein OR329; 99.7 8.5E-18 2.9E-22 168.5 14.4 242 212-500 1-245 (252)
15 3ul1_B Importin subunit alpha- 99.7 1E-17 3.6E-22 190.8 16.9 271 207-493 94-384 (510)
16 3nmw_A APC variant protein; AR 99.7 3.1E-18 1.1E-22 189.3 10.9 202 189-405 103-318 (354)
17 3now_A UNC-45 protein, SD10334 99.7 1.1E-17 3.8E-22 202.3 14.2 272 206-494 488-780 (810)
18 4db8_A Armadillo-repeat protei 99.7 4.2E-17 1.4E-21 165.4 14.7 234 212-494 11-249 (252)
19 3nmz_A APC variant protein; pr 99.7 1.5E-17 5E-22 190.0 11.3 201 191-406 221-435 (458)
20 1xm9_A Plakophilin 1; armadill 99.7 1.1E-16 3.9E-21 180.4 18.3 173 214-403 3-196 (457)
21 3now_A UNC-45 protein, SD10334 99.7 2.1E-17 7.2E-22 199.8 13.0 284 191-495 400-736 (810)
22 3tpo_A Importin subunit alpha- 99.7 9.2E-17 3.2E-21 183.4 15.7 271 207-493 113-403 (529)
23 3l6x_A Catenin delta-1; cateni 99.7 7.9E-17 2.7E-21 189.0 15.5 267 212-496 47-384 (584)
24 3ub2_A TOLL/interleukin-1 rece 99.7 2.3E-18 7.7E-23 169.2 2.0 129 651-798 4-139 (146)
25 4hxt_A De novo protein OR329; 99.7 9.6E-17 3.3E-21 160.8 13.6 188 204-406 35-226 (252)
26 4db8_A Armadillo-repeat protei 99.7 1.5E-16 5.1E-21 161.3 14.8 189 202-406 43-236 (252)
27 4b8j_A Importin subunit alpha- 99.7 1.2E-16 4.3E-21 180.1 13.8 289 190-494 138-441 (528)
28 4db6_A Armadillo repeat protei 99.7 4.7E-16 1.6E-20 153.8 15.0 183 210-407 9-195 (210)
29 3tt9_A Plakophilin-2; cell adh 99.7 4.3E-16 1.5E-20 163.8 13.0 173 214-403 9-205 (233)
30 1jdh_A Beta-catenin; beta-cate 99.6 9.9E-16 3.4E-20 170.5 15.3 274 205-495 50-338 (529)
31 1wa5_B Importin alpha subunit; 99.6 9.1E-16 3.1E-20 173.7 14.5 290 190-495 151-456 (530)
32 4db6_A Armadillo repeat protei 99.6 7.2E-16 2.5E-20 152.5 12.1 176 190-372 32-210 (210)
33 1fyx_A TOLL-like receptor 2; b 99.6 1.4E-16 4.7E-21 156.6 6.7 130 655-798 3-148 (149)
34 1jdh_A Beta-catenin; beta-cate 99.6 9.8E-16 3.4E-20 170.5 14.0 275 203-494 217-528 (529)
35 4b8j_A Importin subunit alpha- 99.6 1.9E-15 6.4E-20 170.5 16.4 273 205-494 109-398 (528)
36 2j67_A TOLL like receptor 10; 99.6 2.8E-16 9.6E-21 159.1 7.5 132 653-797 31-177 (178)
37 2js7_A Myeloid differentiation 99.6 1.1E-16 3.7E-21 159.4 3.2 133 653-802 12-154 (160)
38 2jdq_A Importin alpha-1 subuni 99.6 7.8E-15 2.7E-19 159.6 16.6 277 204-495 98-389 (450)
39 1wa5_B Importin alpha subunit; 99.6 7.5E-15 2.6E-19 166.2 17.0 271 207-494 124-410 (530)
40 1xqr_A HSPBP1 protein; armadil 99.6 4.8E-15 1.6E-19 160.3 14.2 163 206-373 74-240 (296)
41 2z6h_A Catenin beta-1, beta-ca 99.6 7.4E-15 2.5E-19 171.2 13.7 278 204-498 215-529 (644)
42 2z6h_A Catenin beta-1, beta-ca 99.6 1.5E-14 5E-19 168.7 15.4 269 207-495 8-291 (644)
43 2z6g_A B-catenin; FULL-length, 99.6 9.8E-15 3.3E-19 175.4 14.0 278 205-499 352-666 (780)
44 2jdq_A Importin alpha-1 subuni 99.5 3.7E-14 1.3E-18 154.3 15.4 268 209-493 59-344 (450)
45 3tt9_A Plakophilin-2; cell adh 99.5 7.4E-15 2.5E-19 154.5 8.5 162 203-371 42-229 (233)
46 1v85_A Similar to ring finger 99.5 9.2E-15 3.1E-19 133.3 7.4 73 503-575 14-89 (91)
47 1t3g_A X-linked interleukin-1 99.5 9.3E-15 3.2E-19 145.3 7.3 117 656-783 1-139 (159)
48 2gle_A Neurabin-1; SAM domain, 99.5 6E-15 2E-19 128.9 5.0 68 505-573 3-70 (74)
49 2z6g_A B-catenin; FULL-length, 99.5 6E-14 2.1E-18 168.5 14.7 274 205-495 183-471 (780)
50 3bs7_A Protein aveugle; sterIl 99.5 9.9E-15 3.4E-19 128.7 5.8 71 504-575 1-73 (78)
51 2d8c_A Phosphatidylcholine:cer 99.5 7.7E-15 2.6E-19 135.8 4.9 75 498-574 9-84 (97)
52 3bq7_A Diacylglycerol kinase d 99.5 1.8E-14 6.3E-19 128.4 6.7 70 504-574 5-74 (81)
53 2e8o_A SAM domain and HD domai 99.5 8.7E-15 3E-19 136.2 4.7 74 500-574 21-96 (103)
54 3bs5_B Connector enhancer of k 99.5 1.7E-14 6E-19 127.7 6.2 70 504-574 2-73 (80)
55 2f3n_A SH3 and multiple ankyri 99.5 1.4E-14 4.8E-19 127.8 5.1 67 506-573 2-68 (76)
56 3bs5_A Protein aveugle; sterIl 99.5 3.5E-14 1.2E-18 133.1 5.7 72 503-575 20-93 (106)
57 2ean_A Connector enhancer of k 99.5 3.3E-14 1.1E-18 127.1 4.9 70 504-574 6-77 (83)
58 1kw4_A Polyhomeotic; SAM domai 99.4 8.1E-14 2.8E-18 127.0 6.1 71 504-575 12-83 (89)
59 3opb_A SWI5-dependent HO expre 99.4 2.2E-12 7.6E-17 154.9 16.8 257 202-477 364-707 (778)
60 1pk1_B Sex COMB on midleg CG94 99.3 5.7E-13 2E-17 121.5 5.6 76 498-574 6-83 (89)
61 2ke7_A Ankyrin repeat and ster 99.3 1.7E-13 5.7E-18 127.8 2.0 83 505-588 16-103 (103)
62 1wwv_A Connector enhancer of k 99.3 6.6E-13 2.3E-17 121.5 5.1 69 503-574 8-78 (91)
63 3tad_C Liprin-beta-1; protein 99.3 3.1E-12 1.1E-16 136.9 10.1 127 505-634 86-234 (265)
64 3opb_A SWI5-dependent HO expre 99.3 6.1E-12 2.1E-16 151.2 13.4 270 201-479 445-759 (778)
65 3j0a_A TOLL-like receptor 5; m 99.3 5.8E-12 2E-16 151.7 9.1 134 653-800 666-817 (844)
66 3tac_B Liprin-alpha-2; transfe 99.2 4.3E-12 1.5E-16 138.4 5.9 229 312-574 22-319 (334)
67 1xqr_A HSPBP1 protein; armadil 99.2 3.1E-11 1.1E-15 130.6 11.8 166 227-407 54-224 (296)
68 2kso_A Ephrin type-A receptor 99.2 1E-11 3.5E-16 111.5 4.7 68 505-573 10-78 (82)
69 2qkq_A Ephrin type-B receptor 99.1 1.2E-11 4.1E-16 110.7 3.0 70 504-574 7-78 (83)
70 1b4f_A EPHB2; SAM domain, EPH 99.1 3.6E-11 1.2E-15 107.3 5.8 69 505-574 4-74 (82)
71 2e8n_A Ephrin type-A receptor 99.1 6.1E-11 2.1E-15 107.4 6.4 69 505-574 5-75 (88)
72 2kg5_A ARF-GAP, RHO-GAP domain 99.1 3.1E-11 1E-15 112.3 4.4 69 506-575 21-90 (100)
73 2eam_A Putative 47 kDa protein 99.1 2.6E-11 8.8E-16 107.9 3.6 66 507-573 8-76 (80)
74 1ucv_A Ephrin type-A receptor 99.1 5.5E-11 1.9E-15 106.2 5.1 63 511-574 7-70 (81)
75 3h8m_A Ephrin type-A receptor 99.1 7.4E-11 2.5E-15 107.8 5.6 66 507-573 21-87 (90)
76 2k4p_A Phosphatidylinositol-3, 99.1 3.7E-11 1.3E-15 109.0 3.3 66 505-571 20-86 (86)
77 2dl0_A SAM and SH3 domain-cont 99.1 3.7E-11 1.3E-15 111.2 3.3 70 504-574 16-86 (97)
78 2eao_A Ephrin type-B receptor 99.0 1.5E-10 5.2E-15 107.0 4.6 69 505-574 15-85 (99)
79 3hil_A Ephrin type-A receptor 99.0 1.8E-10 6.1E-15 103.6 4.5 62 508-570 20-82 (82)
80 1b0x_A Protein (EPHA4 receptor 99.0 2.1E-10 7.2E-15 105.2 5.0 64 510-574 25-89 (94)
81 3kka_C Ephrin type-A receptor 99.0 2E-10 6.9E-15 104.1 4.4 64 509-573 19-83 (86)
82 3k1r_B Usher syndrome type-1G 99.0 4.4E-10 1.5E-14 99.2 6.2 62 512-575 3-64 (74)
83 1ow5_A Serine/threonine-protei 98.9 4.6E-10 1.6E-14 101.1 4.9 61 513-574 17-78 (85)
84 1x40_A ARAP2; ASAP-related pro 98.9 5.8E-10 2E-14 101.8 5.0 63 511-574 15-78 (91)
85 1v38_A SAM-domain protein sams 98.9 7.2E-10 2.4E-14 98.5 4.9 67 507-574 8-75 (78)
86 1uqv_A STE50 protein; SAM, ste 98.9 1.3E-09 4.5E-14 98.0 5.8 68 504-572 7-78 (85)
87 2dkz_A Hypothetical protein LO 98.9 2.5E-09 8.7E-14 95.9 7.2 68 500-568 9-77 (84)
88 2lmr_A ODIN, ankyrin repeat an 98.8 7.2E-10 2.5E-14 103.3 2.6 65 509-574 27-94 (101)
89 2l5y_A Stromal interaction mol 98.8 1.6E-09 5.3E-14 107.4 2.6 60 505-564 77-140 (150)
90 3sei_A Caskin-1; SAM domain, p 98.8 5.3E-09 1.8E-13 103.3 6.2 64 509-573 77-141 (149)
91 2k60_A Protein (stromal intera 98.8 2.1E-09 7.3E-14 106.4 3.0 64 505-568 77-145 (150)
92 2kiv_A Ankyrin repeat and ster 98.6 3.1E-08 1E-12 97.6 6.5 63 507-569 84-147 (148)
93 1ucv_A Ephrin type-A receptor 98.6 5.5E-08 1.9E-12 86.8 6.5 61 582-645 8-69 (81)
94 1v38_A SAM-domain protein sams 98.6 7.7E-08 2.6E-12 85.5 7.1 64 579-645 10-74 (78)
95 2kg5_A ARF-GAP, RHO-GAP domain 98.6 1.1E-07 3.7E-12 88.5 8.3 66 578-646 23-89 (100)
96 2ke7_A Ankyrin repeat and ster 98.6 4.6E-08 1.6E-12 91.2 5.5 78 558-645 6-86 (103)
97 1b4f_A EPHB2; SAM domain, EPH 98.6 8E-08 2.7E-12 85.7 6.7 61 582-645 12-73 (82)
98 2dl0_A SAM and SH3 domain-cont 98.6 7.6E-08 2.6E-12 89.1 6.5 63 580-645 22-85 (97)
99 2k4p_A Phosphatidylinositol-3, 98.5 9.7E-08 3.3E-12 86.6 6.7 63 578-643 23-86 (86)
100 2kso_A Ephrin type-A receptor 98.5 7E-08 2.4E-12 86.6 5.6 63 580-645 15-78 (82)
101 3hil_A Ephrin type-A receptor 98.5 1.3E-07 4.6E-12 84.9 7.0 59 581-642 23-82 (82)
102 3h8m_A Ephrin type-A receptor 98.5 1.7E-07 5.7E-12 85.7 7.6 61 581-644 25-86 (90)
103 2f3n_A SH3 and multiple ankyri 98.5 9.6E-08 3.3E-12 84.1 5.7 64 579-645 5-68 (76)
104 2qkq_A Ephrin type-B receptor 98.5 1.1E-07 3.7E-12 85.1 5.8 61 582-645 16-77 (83)
105 2e8n_A Ephrin type-A receptor 98.5 1.2E-07 4E-12 85.9 5.5 61 582-645 13-74 (88)
106 1b0x_A Protein (EPHA4 receptor 98.5 1.8E-07 6.2E-12 85.7 6.8 62 581-645 26-88 (94)
107 1x40_A ARAP2; ASAP-related pro 98.5 1.9E-07 6.4E-12 85.3 6.8 62 581-645 15-77 (91)
108 3bq7_A Diacylglycerol kinase d 98.5 1.3E-07 4.5E-12 84.2 5.6 66 577-645 8-73 (81)
109 2eao_A Ephrin type-B receptor 98.5 1.7E-07 6E-12 86.6 6.4 62 582-646 23-85 (99)
110 1eiw_A Hypothetical protein MT 98.5 1.4E-07 4.7E-12 89.4 5.7 107 656-802 3-109 (111)
111 2eam_A Putative 47 kDa protein 98.5 1.5E-07 5E-12 83.7 5.6 63 580-645 11-76 (80)
112 3kka_C Ephrin type-A receptor 98.5 1.8E-07 6.1E-12 84.8 6.1 61 581-644 21-82 (86)
113 2gle_A Neurabin-1; SAM domain, 98.4 1.8E-07 6.1E-12 81.5 5.4 64 579-645 7-70 (74)
114 2lmr_A ODIN, ankyrin repeat an 98.4 2.4E-07 8.1E-12 86.4 6.4 64 579-645 27-93 (101)
115 3bs5_B Connector enhancer of k 98.4 2E-07 6.9E-12 82.4 5.4 66 579-645 7-72 (80)
116 3k1r_B Usher syndrome type-1G 98.4 3.8E-07 1.3E-11 80.4 6.3 61 581-645 2-62 (74)
117 2ean_A Connector enhancer of k 98.4 3.4E-07 1.2E-11 81.7 5.7 67 578-645 10-76 (83)
118 2d3d_A VTS1 protein; RNA bindi 98.4 3.1E-07 1.1E-11 83.7 5.1 60 512-574 19-78 (88)
119 3bs7_A Protein aveugle; sterIl 98.3 3.9E-07 1.3E-11 80.2 5.3 66 579-645 6-71 (78)
120 2eap_A Lymphocyte cytosolic pr 98.3 4.7E-07 1.6E-11 82.1 5.8 63 505-569 18-81 (90)
121 3grl_A General vesicular trans 98.3 2.1E-05 7.2E-10 93.4 20.8 193 199-407 107-327 (651)
122 3ltm_A Alpha-REP4; protein eng 98.3 4E-06 1.4E-10 83.3 12.3 199 191-448 1-199 (211)
123 3grl_A General vesicular trans 98.3 2.8E-06 9.5E-11 100.7 12.6 240 227-479 36-323 (651)
124 2b6g_A VTS1P; alpha-helix, pen 98.3 6.1E-07 2.1E-11 85.8 5.8 61 511-574 49-109 (119)
125 1v85_A Similar to ring finger 98.3 5.5E-07 1.9E-11 82.0 4.7 68 578-645 19-87 (91)
126 3bs5_A Protein aveugle; sterIl 98.2 7.9E-07 2.7E-11 83.4 5.3 68 577-645 24-91 (106)
127 1ow5_A Serine/threonine-protei 98.2 9.6E-07 3.3E-11 79.7 5.5 61 582-645 16-77 (85)
128 2es6_A VTS1P; SAM domain, prot 98.2 6.8E-07 2.3E-11 83.1 4.0 60 512-574 32-91 (101)
129 2e8o_A SAM domain and HD domai 98.2 2.4E-06 8.1E-11 79.5 6.6 64 579-645 30-95 (103)
130 2y9u_A Tumor protein 63; apopt 98.1 3.2E-06 1.1E-10 73.9 5.1 62 513-576 6-68 (69)
131 1wwv_A Connector enhancer of k 98.0 1.6E-06 5.5E-11 79.4 2.5 66 577-645 12-77 (91)
132 2y9t_A Tumor protein 63; apopt 98.0 5.6E-06 1.9E-10 74.6 5.6 63 513-577 8-71 (82)
133 2y9u_A Tumor protein 63; apopt 98.0 9.2E-06 3.1E-10 71.0 6.3 60 582-645 5-65 (69)
134 1kw4_A Polyhomeotic; SAM domai 97.9 9.7E-06 3.3E-10 73.8 5.1 65 578-645 16-81 (89)
135 2d8c_A Phosphatidylcholine:cer 97.9 1.2E-05 3.9E-10 74.6 5.2 65 578-646 19-84 (97)
136 2y9t_A Tumor protein 63; apopt 97.9 2.3E-05 7.8E-10 70.7 6.9 61 582-646 7-68 (82)
137 4gmo_A Putative uncharacterize 97.8 3.3E-05 1.1E-09 91.9 9.6 171 213-397 34-232 (684)
138 1oyz_A Hypothetical protein YI 97.8 0.00024 8.1E-09 73.5 14.0 226 209-496 19-250 (280)
139 1oxj_A RNA-binding protein sma 97.7 7.6E-06 2.6E-10 82.5 1.9 58 513-574 9-66 (173)
140 3ltj_A Alpharep-4; protein eng 97.7 0.00023 7.8E-09 70.0 12.0 181 212-447 13-193 (201)
141 3ltj_A Alpharep-4; protein eng 97.5 0.0013 4.6E-08 64.5 14.1 123 212-370 44-166 (201)
142 2d3d_A VTS1 protein; RNA bindi 97.5 0.00014 5E-09 66.3 6.5 58 583-645 20-77 (88)
143 1pk1_B Sex COMB on midleg CG94 97.3 0.00019 6.4E-09 65.5 5.2 66 579-645 17-82 (89)
144 2qar_B Telsam domain; polymer, 97.3 0.0001 3.5E-09 67.8 2.8 72 498-574 4-78 (93)
145 2es6_A VTS1P; SAM domain, prot 97.3 0.00032 1.1E-08 65.4 6.0 58 583-645 33-90 (101)
146 2b6g_A VTS1P; alpha-helix, pen 97.3 0.00029 9.9E-09 67.5 5.7 58 583-645 51-108 (119)
147 3ltm_A Alpha-REP4; protein eng 97.2 0.0018 6.1E-08 64.1 11.3 124 212-371 49-172 (211)
148 1oyz_A Hypothetical protein YI 97.2 0.0061 2.1E-07 62.9 15.8 135 212-372 53-189 (280)
149 4gmo_A Putative uncharacterize 97.2 0.00047 1.6E-08 82.1 8.0 165 205-370 67-257 (684)
150 3hyn_A Putative signal transdu 96.8 0.003 1E-07 64.7 9.0 94 672-775 33-141 (189)
151 1ji7_A ETS-related protein TEL 96.8 0.00054 1.8E-08 62.6 2.9 71 499-574 5-78 (89)
152 1oxj_A RNA-binding protein sma 96.7 0.0014 4.8E-08 66.2 5.0 57 582-644 8-64 (173)
153 1b3u_A Protein (protein phosph 96.6 0.014 4.8E-07 65.3 13.1 149 215-371 205-353 (588)
154 1sv0_C Modulator of the activi 96.5 0.0014 4.8E-08 58.8 3.7 63 504-571 9-76 (82)
155 1b3u_A Protein (protein phosph 96.4 0.053 1.8E-06 60.7 16.2 145 215-372 89-233 (588)
156 2dkz_A Hypothetical protein LO 96.4 0.0038 1.3E-07 56.3 5.5 65 576-643 15-80 (84)
157 1te4_A Conserved protein MTH18 96.3 0.00041 1.4E-08 64.8 -1.3 121 211-368 10-130 (131)
158 3b2a_A TON_1937, putative unch 96.0 0.014 4.9E-07 62.1 8.1 149 211-378 31-189 (265)
159 2vgl_B AP-2 complex subunit be 95.8 0.059 2E-06 62.6 13.1 102 217-330 90-191 (591)
160 2vgl_B AP-2 complex subunit be 95.7 0.014 4.8E-07 67.9 7.4 70 300-371 240-311 (591)
161 3dad_A FH1/FH2 domain-containi 95.5 0.034 1.2E-06 61.7 9.0 121 206-332 153-289 (339)
162 1te4_A Conserved protein MTH18 95.3 0.039 1.3E-06 51.3 7.8 89 214-326 43-131 (131)
163 2l5y_A Stromal interaction mol 94.9 0.0078 2.7E-07 59.8 1.7 56 580-636 82-140 (150)
164 4fdd_A Transportin-1; heat rep 94.8 0.11 3.8E-06 62.3 11.7 213 215-448 176-425 (852)
165 2k60_A Protein (stromal intera 94.8 0.0059 2E-07 60.7 0.5 60 580-640 82-145 (150)
166 4fdd_A Transportin-1; heat rep 94.1 0.45 1.5E-05 57.1 14.8 153 213-374 128-288 (852)
167 4ady_A RPN2, 26S proteasome re 94.1 0.3 1E-05 60.9 13.1 138 215-371 474-641 (963)
168 2f62_A Nucleoside 2-deoxyribos 93.9 0.25 8.6E-06 49.4 10.0 78 670-757 26-107 (161)
169 1x66_A Friend leukemia integra 93.5 0.06 2.1E-06 49.9 4.3 68 501-573 19-91 (98)
170 1sxe_A Transcriptional regulat 93.4 0.093 3.2E-06 48.6 5.5 68 501-573 22-94 (97)
171 2e8m_A Epidermal growth factor 93.1 0.077 2.6E-06 49.4 4.4 59 507-572 32-91 (99)
172 1sv0_A ETS DNA-binding protein 93.1 0.057 1.9E-06 48.9 3.4 70 499-574 3-76 (85)
173 1wwu_A Hypothetical protein FL 92.7 0.057 2E-06 50.3 2.9 61 507-573 22-83 (99)
174 1uqv_A STE50 protein; SAM, ste 92.5 0.14 4.7E-06 46.5 5.0 67 576-645 9-79 (85)
175 1dxs_A P53-like transcription 92.5 0.09 3.1E-06 47.1 3.7 63 513-577 8-71 (80)
176 1ibr_B P95, importin beta-1 su 92.0 0.15 5.1E-06 55.2 5.7 138 215-371 3-159 (462)
177 1sxd_A GA repeat binding prote 91.8 0.06 2E-06 49.4 1.9 66 502-574 19-88 (91)
178 2qk2_A LP04448P; mini spindles 91.4 1.4 4.6E-05 44.8 11.7 169 176-370 31-204 (242)
179 2dkx_A SAM pointed domain-cont 91.3 0.1 3.4E-06 48.3 2.9 66 503-574 21-90 (96)
180 3idw_A Actin cytoskeleton-regu 90.7 0.44 1.5E-05 42.0 6.1 53 516-570 7-64 (72)
181 2ytu_A Friend leukemia integra 90.1 0.16 5.6E-06 49.2 3.3 68 501-573 33-105 (128)
182 2jv3_A ETS1 proto-oncogene; ET 90.0 0.16 5.4E-06 48.1 3.0 67 502-573 37-107 (110)
183 2e8p_A ELF3 protein; cell-free 89.4 0.14 4.7E-06 47.2 2.0 66 503-572 21-90 (92)
184 2qk1_A Protein STU2; STU2P, XM 89.2 0.85 2.9E-05 47.6 8.1 152 216-378 63-230 (249)
185 1w63_A Adapter-related protein 88.9 2.8 9.6E-05 49.1 13.1 161 198-378 290-459 (618)
186 3tjz_B Coatomer subunit gamma; 88.4 2.1 7E-05 47.8 10.9 202 219-448 110-349 (355)
187 1w63_A Adapter-related protein 87.9 1.1 3.8E-05 52.5 8.9 137 219-372 113-264 (618)
188 1ibr_B P95, importin beta-1 su 86.5 0.4 1.4E-05 51.9 3.7 116 202-329 84-204 (462)
189 3ehd_A Uncharacterized conserv 86.2 2.3 7.8E-05 42.6 8.8 77 671-758 20-107 (162)
190 2khz_A C-MYC-responsive protei 84.3 13 0.00045 36.7 13.3 129 655-800 9-152 (165)
191 4fyk_A Deoxyribonucleoside 5'- 83.6 3.3 0.00011 41.1 8.5 112 671-800 19-143 (152)
192 1qgr_A Protein (importin beta 83.5 11 0.00038 44.4 14.4 110 215-328 174-288 (876)
193 1dxs_A P53-like transcription 83.2 1.8 6.2E-05 38.8 5.7 61 582-646 7-68 (80)
194 2vgl_A Adaptor protein complex 81.3 3.5 0.00012 48.6 9.0 100 220-329 118-217 (621)
195 2qb0_B Telsam domain - lysozym 80.7 0.5 1.7E-05 49.9 1.4 69 500-574 6-78 (241)
196 4ady_A RPN2, 26S proteasome re 80.0 10 0.00036 47.4 12.8 57 307-371 620-676 (963)
197 2qk2_A LP04448P; mini spindles 79.4 2.5 8.5E-05 42.8 6.1 142 218-371 20-162 (242)
198 1u6g_C TIP120 protein, CAND1; 79.0 4.6 0.00016 50.5 9.4 147 215-371 8-163 (1230)
199 2bpt_A Importin beta-1 subunit 76.8 4.1 0.00014 48.0 7.7 139 215-371 6-164 (861)
200 3idw_A Actin cytoskeleton-regu 76.8 3.7 0.00013 36.3 5.4 45 596-642 20-64 (72)
201 1u6g_C TIP120 protein, CAND1; 76.0 5.7 0.00019 49.7 9.1 150 215-372 50-205 (1230)
202 2h80_A STAR-related lipid tran 74.8 0.79 2.7E-05 40.8 0.7 25 511-535 21-45 (81)
203 1qgr_A Protein (importin beta 74.0 4.6 0.00016 47.6 7.2 164 189-372 77-247 (876)
204 1s2d_A Purine trans deoxyribos 73.8 5.8 0.0002 39.7 6.8 85 659-754 9-115 (167)
205 3tjz_B Coatomer subunit gamma; 71.7 60 0.0021 36.1 15.0 239 218-500 73-320 (355)
206 1f8y_A Nucleoside 2-deoxyribos 71.4 7.6 0.00026 38.4 7.0 77 670-757 18-115 (157)
207 2dky_A RHO-GTPase-activating p 70.6 2.4 8.1E-05 38.6 2.7 25 511-535 23-47 (91)
208 2bpt_A Importin beta-1 subunit 70.2 12 0.00042 43.9 9.6 157 202-372 89-254 (861)
209 2vgl_A Adaptor protein complex 65.5 55 0.0019 38.5 13.8 120 198-328 306-433 (621)
210 3gs3_A Symplekin, LD45768P; he 61.4 29 0.00099 37.0 9.5 90 228-330 30-119 (257)
211 3dad_A FH1/FH2 domain-containi 59.4 12 0.00042 41.6 6.3 93 272-366 133-225 (339)
212 2l82_A Designed protein OR32; 57.3 76 0.0026 30.2 10.3 121 658-800 27-152 (162)
213 3eg5_B Protein diaphanous homo 55.0 12 0.00043 41.8 5.6 89 298-387 108-210 (383)
214 3ebb_A Phospholipase A2-activa 54.3 1.2E+02 0.0042 32.8 13.1 126 226-360 161-295 (304)
215 1lrv_A LRV, leucine-rich repea 50.5 25 0.00087 36.9 6.8 111 214-363 75-191 (244)
216 3o2t_A Symplekin; heat repeat, 50.0 37 0.0013 38.4 8.3 90 228-330 40-129 (386)
217 2e8m_A Epidermal growth factor 49.8 19 0.00066 33.5 4.9 45 578-625 33-77 (99)
218 3ebb_A Phospholipase A2-activa 49.3 89 0.003 33.9 11.0 138 178-326 162-303 (304)
219 3b2a_A TON_1937, putative unch 49.2 70 0.0024 34.4 9.7 177 298-493 32-215 (265)
220 2f31_A Diaphanous protein homo 48.6 10 0.00036 39.2 3.4 89 298-387 42-144 (233)
221 1x5b_A Signal transducing adap 46.9 36 0.0012 33.7 6.8 75 186-262 18-105 (163)
222 2eap_A Lymphocyte cytosolic pr 46.5 16 0.00055 33.5 3.8 42 578-622 21-63 (90)
223 1juq_A ADP-ribosylation factor 44.4 61 0.0021 32.4 8.1 76 184-261 14-102 (171)
224 1wwu_A Hypothetical protein FL 44.0 25 0.00085 32.8 4.7 48 579-630 24-71 (99)
225 2yvq_A Carbamoyl-phosphate syn 41.9 35 0.0012 32.9 5.7 61 660-721 27-106 (143)
226 1ho8_A Vacuolar ATP synthase s 41.6 2.5E+02 0.0087 32.6 13.6 258 218-494 172-474 (480)
227 4ffb_C Protein STU2; tubulin f 40.8 92 0.0031 32.1 9.2 139 220-369 62-210 (278)
228 3cb4_D GTP-binding protein LEP 39.0 1E+02 0.0035 36.5 10.2 73 696-779 79-153 (599)
229 2vzf_A NADH-dependent FMN redu 35.1 1.6E+02 0.0054 28.9 9.5 54 669-723 18-82 (197)
230 2bnx_A Diaphanous protein homo 35.1 23 0.00079 39.6 3.7 89 298-387 46-148 (386)
231 1mhq_A ADP-ribosylation factor 34.1 1E+02 0.0034 30.1 7.6 63 200-262 20-91 (148)
232 3eg5_B Protein diaphanous homo 33.7 1.3E+02 0.0046 33.4 9.6 121 207-333 104-250 (383)
233 2ywe_A GTP-binding protein LEP 33.6 1.4E+02 0.0048 35.4 10.2 73 696-779 81-155 (600)
234 2ce2_X GTPase HRAS; signaling 31.6 2.2E+02 0.0074 25.4 9.1 77 698-780 63-140 (166)
235 2db0_A 253AA long hypothetical 31.6 3.5E+02 0.012 28.5 11.2 125 188-329 10-137 (253)
236 2xpp_A IWS1, ECU08_0440; trans 31.1 2.5E+02 0.0084 27.6 9.8 112 117-267 2-119 (145)
237 3vqt_A RF-3, peptide chain rel 30.9 1E+02 0.0036 35.9 8.4 65 683-761 98-165 (548)
238 3c2g_A SYS-1 protein; beta-cat 26.7 2.2E+02 0.0074 32.5 9.4 124 180-311 252-379 (619)
239 2qk1_A Protein STU2; STU2P, XM 25.8 1.9E+02 0.0067 29.7 8.6 111 215-328 106-220 (249)
240 1zbd_A Rabphilin-3A; G protein 25.1 3.3E+02 0.011 25.8 9.6 97 699-801 70-173 (203)
241 3c2g_A SYS-1 protein; beta-cat 24.9 72 0.0024 36.3 5.2 109 281-410 266-386 (619)
242 1dvp_A HRS, hepatocyte growth 24.1 1.5E+02 0.0053 30.2 7.4 76 184-261 6-94 (220)
243 1z0f_A RAB14, member RAS oncog 24.0 1.6E+02 0.0056 26.9 6.9 77 699-781 77-154 (179)
244 2efe_B Small GTP-binding prote 23.6 1.8E+02 0.0063 26.7 7.3 94 699-801 74-173 (181)
245 3tkl_A RAS-related protein RAB 21.8 2.9E+02 0.0097 25.9 8.3 96 699-800 78-180 (196)
246 1sqs_A Conserved hypothetical 21.5 4.8E+02 0.016 26.3 10.5 106 669-781 17-148 (242)
247 3net_A Histidyl-tRNA synthetas 21.2 1.7E+02 0.0059 33.2 7.7 84 629-720 348-431 (465)
248 3clv_A RAB5 protein, putative; 20.3 3.8E+02 0.013 24.7 8.8 74 699-781 106-180 (208)
249 4dsu_A GTPase KRAS, isoform 2B 20.1 2.7E+02 0.0091 25.8 7.6 95 699-799 65-166 (189)
250 3hjn_A DTMP kinase, thymidylat 20.0 1.6E+02 0.0053 29.4 6.3 86 660-758 1-90 (197)
No 1
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-30 Score=278.66 Aligned_cols=232 Identities=20% Similarity=0.334 Sum_probs=192.1
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc--cc
Q psy4858 499 PHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA--DY 576 (979)
Q Consensus 499 p~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~--~y 576 (979)
.+....++..|+.++|+.||+.+||++|++.|.+|.+||..|+.||++||+.+|||++++|||||+++|++|+... .|
T Consensus 8 ~~~~~~p~~~W~~e~V~~WLe~~GL~~Y~~~f~~n~~dG~~Ll~lt~~dLe~eLGI~nplHRkKL~laI~el~~~~~~~~ 87 (265)
T 3tad_C 8 NSDLDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLHRKKLQLALQALGSEEETNY 87 (265)
T ss_dssp ------CGGGSCHHHHHHHHHHTTCCTTHHHHTTTCSCSHHHHHSCHHHHHHHTCCCSHHHHHHHHHHHHHHHHCSCCSG
T ss_pred CCCCCCChhhCChHHHHHHHHHHCHHHHHHHHHHhCCchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHhcccccccc
Confidence 3445568999999999999999999999999999999999999999999988999999999999999999999643 56
Q ss_pred CCCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhccccccCCCCCC
Q psy4858 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKEYEDNPDK 656 (979)
Q Consensus 577 ss~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~~~~~~~~~~~ 656 (979)
+..++.++.+||.+|| |+||++.|.+++||+++|..||++||. +|||++.+||.+|+.||+.|+... ++
T Consensus 88 ~~~d~~wv~~WL~~IG--L~QY~~~F~~~~iDg~~L~~LT~~DL~-~LGIt~~~HR~kil~aI~~L~~~~-~d------- 156 (265)
T 3tad_C 88 GKLDFNWVTRWLDDIG--LPQYKTQFDEGRVDGRMLHYMTVDDLL-SLKVVSVLHHLSIKRAIQVLRINN-FE------- 156 (265)
T ss_dssp GGCCHHHHHHHHHHHT--CGGGHHHHHHHTCCHHHHHTCBHHHHH-HTTCCBHHHHHHHHHHHHHHHHTT-TC-------
T ss_pred cccChHHHHHHHHHcC--cHHHHHHHHHcCCCHHHhcccCHHHHH-HcCCCcHHhHHHHHHHHHHHhhcC-CC-------
Confidence 7888999999999999 999999999999999999999999999 799999999999999999998654 22
Q ss_pred CCCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhccc--CCCcCC
Q psy4858 657 NLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMED--NESECK 734 (979)
Q Consensus 657 ~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~--~i~~~S 734 (979)
++... =|+.|..+. ...+.+.|...+|.-+.++|...+|+++|.++..+.. ++|+.|.|-...+.. .|+..+
T Consensus 157 -~~~L~-rr~~~~~~~--~~~~v~~Wtn~rv~~Wl~~i~L~eya~NL~~sGvhGa--l~~le~~F~~~~lA~~L~iP~~k 230 (265)
T 3tad_C 157 -PNCLR-RRPSDENSI--TPSEVQQWTNHRVMEWLRSVDLAEYAPNLRGSGVHGG--LMVLEPRFNVETMAQLLNIPPNK 230 (265)
T ss_dssp -TTSSS-CCCCSGGGS--SGGGGGGCCHHHHHHHHHHTTCTTTGGGGTTSCCCHH--HHHHCTTCCHHHHHHHTTCCTTC
T ss_pred -HHHHH-hccccccCC--CcccccccchHHHHHHHHhCCHHHHHhHhhhcCccch--hhhccCCCCHHHHHHHhCCCCCc
Confidence 11121 122221111 1235578889999999999999999999999888877 788999875443333 688999
Q ss_pred hhHHHHHHHHHhc
Q psy4858 735 DWVHREIVAALQS 747 (979)
Q Consensus 735 dWV~rEL~~Al~~ 747 (979)
+-.|+.|++-++.
T Consensus 231 ~~~rrhl~~~f~~ 243 (265)
T 3tad_C 231 TLLRRHLATHFNL 243 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887653
No 2
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=99.91 E-value=3.9e-26 Score=247.75 Aligned_cols=226 Identities=17% Similarity=0.279 Sum_probs=181.3
Q ss_pred CCCCCCCHHHHHHHHHH-cCchH-HHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc-------
Q psy4858 504 QQVPLWSTEDVREWVRQ-IGFAE-YANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA------- 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~-IGL~e-Y~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~------- 574 (979)
.++..|+.++|+.||+. +||++ |++.|.+|.+||..|+.||++||..+|||++++|||||..+|+++....
T Consensus 34 ~Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r~nvkSG~~Ll~LSd~dLekeLGI~nPLHRKKL~LAIqel~~~~sp~~p~~ 113 (334)
T 3tac_B 34 LPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPT 113 (334)
T ss_dssp CCGGGCCHHHHHHHHHHTTCCCHHHHHHHHHHCCSHHHHHTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTCCCCCGG
T ss_pred CChhhCCcHHHHHHHHHHhcChHHHHHHHHHHccchHHHHhCCHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCCcc
Confidence 37899999999999999 89998 9999999999999999999999999999999999999999999996321
Q ss_pred ------------------------------------------ccCCCCccChH-HHhhhcCCCcchhHHHHHhcCCCchh
Q psy4858 575 ------------------------------------------DYSSKDVTNLN-NFLLNLGQEFSIYTYSMLNAGVDKDS 611 (979)
Q Consensus 575 ------------------------------------------~yss~d~~~l~-ewL~~IGpel~qYtys~l~~GvD~~~ 611 (979)
.|+..+..|+. +||.+|| |+||...|.+|+||+++
T Consensus 114 ~r~~~g~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~l~~g~ldh~WV~~~WL~dIG--LpQY~~~F~~~~VDgR~ 191 (334)
T 3tac_B 114 SRTPSGNVWVTHEEMENLAAQAKTKESEEGSWAQCPVFLQTLAYGDMNHEWIGNEWLPSLG--LPQYRSYFMECLVDARM 191 (334)
T ss_dssp GCCCCCCSSCBHHHHHHHHHHHTTC--------------------CCCHHHHHHTHHHHTT--CGGGHHHHHHTTCCHHH
T ss_pred ccccccccccchhhhhhhhcccccccccccccccccchhhhhhcccCccCcchhhhccccC--hHHhHHHHHhcCcchhh
Confidence 12334445555 8999999 99999999999999999
Q ss_pred hhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhccccccCCCCCCCCCeeEecccCCccchHHHHHHHHHhcCCceEeec
Q psy4858 612 IKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKEYEDNPDKNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDV 691 (979)
Q Consensus 612 L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~~~~~~~~~~~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~ 691 (979)
|..||.+||...|||++.+||.+|+.||+.|+... ++. +. +--||...+. ...+.+.+.+.+|.-+.
T Consensus 192 L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~~-~d~--------~~-L~~Rr~~~~~---~~~dv~vWtn~rV~~Wl 258 (334)
T 3tac_B 192 LDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLN-YDR--------KE-LERRREASQH---EIKDVLVWSNDRVIRWI 258 (334)
T ss_dssp HTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHTT-TCH--------HH-HHHHHHHTSS---SSCCGGGCCHHHHHHHH
T ss_pred hhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhcC-CCH--------HH-Hhhccccccc---cCccccccccHHHHHHH
Confidence 99999999977899999999999999999998653 110 00 1111111000 12234567788888899
Q ss_pred ccCCCCcchHHHHHHHHhCCEEEEEECcccchhhccc--CCCcCChhHHHHHHHHHh
Q psy4858 692 ERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMED--NESECKDWVHREIVAALQ 746 (979)
Q Consensus 692 ~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~--~i~~~SdWV~rEL~~Al~ 746 (979)
++|..++|+++|..+..+.- ++++.|.|-...+.. .|+..+.-.++.|.+-++
T Consensus 259 ~sIdL~EYA~NL~~SGVHGa--l~~Le~~F~~~~lA~~L~IP~~kt~~RrhL~~ef~ 313 (334)
T 3tac_B 259 QAIGLREYANNILESGVHGS--LIALDENFDYSSLALLLQIPTQNTQARQILEREYN 313 (334)
T ss_dssp HHTTCHHHHGGGTTSCCCHH--HHHHCTTCCHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HhcChHHhhhhhhhcCccce--eeeccCCCCHHHHHHHhCCCCCchhhHHHHHHHHH
Confidence 99999999999999877777 788999875433222 578888888888887655
No 3
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=99.90 E-value=5.4e-24 Score=210.25 Aligned_cols=130 Identities=24% Similarity=0.400 Sum_probs=124.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcccCCCCccChHHHhhh
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLN 590 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~yss~d~~~l~ewL~~ 590 (979)
.++|++||+.+||++|.+.|.++++||+.|+.||++||+ +|||+++|||+||+++|+.|+....++..+|.++.+||..
T Consensus 10 ~~~V~~WL~~lgL~~Y~~~F~~~g~d~~~l~~lt~~DL~-~lGIt~~gHrkkil~ai~~L~~~~~~~~~~p~~v~~WL~~ 88 (149)
T 3sei_A 10 SEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLT-AIGVTKPGHRKKIAAEISGLSIPDWLPEHKPANLAVWLSM 88 (149)
T ss_dssp HHHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHH-HTTCCSHHHHHHHHHHHHTCCCCCCSCSSCCSCHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHcCCCHHHHccCCHHHHH-HcCCCCHHHHHHHHHHHHHHHhccccCCCCcccHHHHHHH
Confidence 689999999999999999999999999999999999997 8999999999999999999998888888899999999999
Q ss_pred cCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 591 LGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 591 IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
|| +++|+..|..+||| .+.|..||++||. ++||++.+||.||+.||+.++.
T Consensus 89 ig--L~qY~~~F~~~g~d~~~~l~~lt~~dL~-~lGI~~~gHr~kIl~ai~~l~~ 140 (149)
T 3sei_A 89 IG--LAQYYKVLVDNGYENIDFITDITWEDLQ-EIGITKLGHQKKLMLAVRKLAE 140 (149)
T ss_dssp TT--CGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHH
T ss_pred cC--chhhHHHHHHCCCchHHHHhhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 99 99999999999998 8999999999997 6999999999999999998864
No 4
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=1.9e-23 Score=211.75 Aligned_cols=142 Identities=21% Similarity=0.353 Sum_probs=110.0
Q ss_pred CCCCCCCeeEecccCCc-cchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCC
Q psy4858 653 NPDKNLDVFISYRRSNG-SQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNE 730 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg-~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i 730 (979)
+..+.||||||||+.|. ..|+++|+.+|+++|++||+|.+++++|+ +.++|.++|++|+++|+|+||+|+
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~-------- 75 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYA-------- 75 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTT--------
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcC--------
Confidence 35689999999999996 58999999999999999999999999996 999999999999999999999986
Q ss_pred CcCChhHHHHHHHHHhc----CCeEEEEecCCC--------------------CC---CCCCChHHHHHHhhhccccccc
Q psy4858 731 SECKDWVHREIVAALQS----GCNIIPILDNFA--------------------WP---DPEQLPADMRAICKFNGVRWIH 783 (979)
Q Consensus 731 ~~~SdWV~rEL~~Al~~----~k~IIPVl~~f~--------------------~p---d~e~LPedLr~la~~ngi~w~~ 783 (979)
.|.||+.||+.++++ +..||||||+.. .. ....|..+|..++++.|+++ .
T Consensus 76 --~S~WCl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~-~ 152 (176)
T 3jrn_A 76 --ASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCS-G 152 (176)
T ss_dssp --TCHHHHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEEC-C
T ss_pred --CChhHHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceec-C
Confidence 479999999999986 679999999741 00 13479999999999999987 4
Q ss_pred ccHHHHHHHHHHHHhhcccCcc
Q psy4858 784 DYQDACVDKLERFMRGELNSYR 805 (979)
Q Consensus 784 ~yq~a~IdkIvr~I~g~l~~~~ 805 (979)
+++.+.|++|++.|..+|+..+
T Consensus 153 ~~e~~~i~~Iv~~v~~~l~~~~ 174 (176)
T 3jrn_A 153 DDDSKLVDKIANEISNKKTIYA 174 (176)
T ss_dssp SCHHHHHHHHHHHHHTTCC---
T ss_pred CCHHHHHHHHHHHHHHHhcCCC
Confidence 6789999999999999998753
No 5
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.87 E-value=8.9e-23 Score=210.74 Aligned_cols=143 Identities=20% Similarity=0.355 Sum_probs=121.9
Q ss_pred CCCCCCCCCeeEecccCCc-cchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhccc
Q psy4858 651 EDNPDKNLDVFISYRRSNG-SQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMED 728 (979)
Q Consensus 651 ~~~~~~~yDVFISYRR~Dg-~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~ 728 (979)
+..+.+.||||||||+.|. ..|+++|+.+|+++|++||+|.+++++|+ +.++|.++|+.|+++|+|+||+|+.
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~----- 103 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD----- 103 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG-----
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc-----
Confidence 3456789999999999995 57999999999999999999999999996 9999999999999999999999864
Q ss_pred CCCcCChhHHHHHHHHHhc-----CCeEEEEecCCC---------------------CC--CCCCChHHHHHHhhhcccc
Q psy4858 729 NESECKDWVHREIVAALQS-----GCNIIPILDNFA---------------------WP--DPEQLPADMRAICKFNGVR 780 (979)
Q Consensus 729 ~i~~~SdWV~rEL~~Al~~-----~k~IIPVl~~f~---------------------~p--d~e~LPedLr~la~~ngi~ 780 (979)
|.||+.||+.++++ +..||||||+.. +. ....|..+|..++++.|++
T Consensus 104 -----S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~ 178 (204)
T 3ozi_A 104 -----SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWH 178 (204)
T ss_dssp -----CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEE
T ss_pred -----CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCcee
Confidence 79999999999985 568999999731 10 1347999999999999999
Q ss_pred ccccc-HHHHHHHHHHHHhhcccC
Q psy4858 781 WIHDY-QDACVDKLERFMRGELNS 803 (979)
Q Consensus 781 w~~~y-q~a~IdkIvr~I~g~l~~ 803 (979)
+.+.+ +.+.|++|++.|..++++
T Consensus 179 ~~~~~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 179 IGKNDKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHhcc
Confidence 87654 567899999999988765
No 6
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=99.86 E-value=1.8e-22 Score=198.74 Aligned_cols=133 Identities=28% Similarity=0.437 Sum_probs=116.5
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHh---cCChhhhccccCCCChHHHHHHHHHHHHHHhhcccC--CCC
Q psy4858 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYS--SKD 580 (979)
Q Consensus 506 V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL---~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ys--s~d 580 (979)
|+.=+.++|++||+.+||++|.+.|.++++||..++ .||++||+ ++||++++||+||+++|+.|+....++ ..+
T Consensus 9 ~~~~~~~~V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~-~lGI~~~ghRkkil~ai~~L~~~~~~~~d~~~ 87 (148)
T 2kiv_A 9 VPRGSVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPKMRPIGHDGAH 87 (148)
T ss_dssp -----CCBHHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHH-HHCCSSTTSHHHHHHHHHHCSCCCSSCCCCCC
T ss_pred CCCCCcchHHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 444567889999999999999999999999996665 89999998 899999999999999999998765332 245
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHh
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHE 641 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~ 641 (979)
+.++.+||+.|| +.+|.++|.++||| .+.+..||++||..+|||++.+||.||+.+|++
T Consensus 88 ~~~v~~WL~~i~--L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 88 PTSVAEWLDSIE--LGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CSSHHHHHHTTT--CCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred cchHHHHHHHCC--cHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 679999999999 99999999999996 699999999998668999999999999999985
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=6.9e-20 Score=209.17 Aligned_cols=294 Identities=19% Similarity=0.164 Sum_probs=233.8
Q ss_pred HHhhccCCcchhH-HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhc
Q psy4858 189 QKAWAVPTHGHEI-GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVC 264 (979)
Q Consensus 189 ~~Awa~p~~~~~~-~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~ 264 (979)
.-||++..+ .. ....+..+++.|++.+|+.++.+++.++|..|+.+|.++.. +++|+.|++.| +.+|+.+....
T Consensus 139 ~Aa~aL~ni--a~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~ 216 (529)
T 3tpo_A 139 ESAWALTNI--ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP 216 (529)
T ss_dssp HHHHHHHHH--HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc
Confidence 357888777 43 34567899999999999999999999999999999999975 48999999999 99999999655
Q ss_pred cccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCc
Q psy4858 265 TKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVP 344 (979)
Q Consensus 265 tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~ 344 (979)
..........|+++..|.++..+.+....-....|++++|+.++.++|++++..|+.||+||+-+. +.+...+++.|++
T Consensus 217 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~v~~~g~i 295 (529)
T 3tpo_A 217 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVV 295 (529)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHTTTCH
T ss_pred chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh-hhhHHHHHhccch
Confidence 433333467899999999997777665555556789999999999999999999999999998543 4555667899999
Q ss_pred chhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-----hhhhhhhhc-c-
Q psy4858 345 VWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-----EFAKSNLAH-A- 417 (979)
Q Consensus 345 ~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-----~fAr~~l~~-~- 417 (979)
..|+.++.+.+..++..|+.||+||++..+..... |...|.++.+..++++.++. .++.+++.. .
T Consensus 296 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~--------i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~ 367 (529)
T 3tpo_A 296 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK--------VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 367 (529)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH--------HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHH--------HhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccH
Confidence 99999999999999999999999999865444432 88999999999999987774 334444431 1
Q ss_pred ----cCCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 418 ----HGQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 418 ----~g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
.-.+.|.++.|+.+|.+...+.|.-|++.++ |.....+..+...+.+.|+|++|.++..+++.-....+..+|..
T Consensus 368 ~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~-nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 446 (529)
T 3tpo_A 368 DQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAIT-NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 446 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 1136679999999999988888888887764 45433334455668899999999999988766555556666654
Q ss_pred c
Q psy4858 494 I 494 (979)
Q Consensus 494 ~ 494 (979)
+
T Consensus 447 i 447 (529)
T 3tpo_A 447 I 447 (529)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=9.1e-20 Score=207.79 Aligned_cols=323 Identities=19% Similarity=0.161 Sum_probs=244.6
Q ss_pred HHhhccCCcchhH-HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhc
Q psy4858 189 QKAWAVPTHGHEI-GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVC 264 (979)
Q Consensus 189 ~~Awa~p~~~~~~-~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~ 264 (979)
+-||+|..+ +. ....+..|++.||++.|++++.+++.++|..|+.+|.++.. +++|+.|++.| +.+|+.+....
T Consensus 120 ~Aa~aL~ni--as~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~ 197 (510)
T 3ul1_B 120 ESAWALTNI--ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197 (510)
T ss_dssp HHHHHHHHH--HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSS
T ss_pred HHHHHHHHH--hcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhc
Confidence 568999887 44 56788999999999999999999999999999999999975 48899999999 99999999654
Q ss_pred cccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCc
Q psy4858 265 TKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVP 344 (979)
Q Consensus 265 tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~ 344 (979)
..........|+++..|.++..+.+....-..-.|+++.|+.++.+.|++++..|+.||+||+-+. +.+...+++.|++
T Consensus 198 ~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-~~~~~~i~~~g~i 276 (510)
T 3ul1_B 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-NERIEMVVKKGVV 276 (510)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC-HHHHHHHHTTTCH
T ss_pred cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch-hhhHHHHHhcccc
Confidence 333233457889999999997766555544455789999999999999999999999999998544 4445567899999
Q ss_pred chhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-----hhhhhhhhc-cc
Q psy4858 345 VWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-----EFAKSNLAH-AH 418 (979)
Q Consensus 345 ~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-----~fAr~~l~~-~~ 418 (979)
..|+.++.+.+..++..|+.||+||++..+..... |...|.++.+..++++.++. .++.+++.. ..
T Consensus 277 ~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~--------i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~ 348 (510)
T 3ul1_B 277 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK--------VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348 (510)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH--------HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCH
T ss_pred hhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH--------HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999998875555442 88999999998899887774 334444431 11
Q ss_pred -----CCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 419 -----GQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 419 -----g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
-.+.|.++.|+.+|.+...+.|.-|++.++ |.....+..+...+.+.|+|++|.++..+++.-....+..+|..
T Consensus 349 ~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~-Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~n 427 (510)
T 3ul1_B 349 DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT-NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 427 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH-HHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH-HHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 135679999999999988888888887764 55433344455668889999999999988766555555556554
Q ss_pred ccCcccCcCCCCCCCCCHHHHHHHHHHcCchHHHHHH
Q psy4858 494 IGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNF 530 (979)
Q Consensus 494 ~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F 530 (979)
+-+..+. +. ..+.++..+++.|.-+..+.+
T Consensus 428 il~~~~~-~~------~~~~~~~~iee~ggl~~ie~L 457 (510)
T 3ul1_B 428 IFQAAEK-LG------ETEKLSIMIEECGGLDKIEAL 457 (510)
T ss_dssp HHHHHHT-TT------CHHHHHHHHHHTTHHHHHHHG
T ss_pred HHHHhHh-cc------chHHHHHHHHHcCcHHHHHHH
Confidence 3221111 10 245566666666644444433
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.80 E-value=7e-20 Score=202.40 Aligned_cols=281 Identities=17% Similarity=0.108 Sum_probs=220.2
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhc-----cc-cccccchhhhhhhHhhh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVC-----TK-NINSVEHSRVGTGILEH 283 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~-----tk-~~~~~~~~r~~~giL~~ 283 (979)
.+|++.=-+-+-.|+.+++|.|+++|.++.. ++||+.|++.| +.+|++|.... +. ...+.+.++.++.+|.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~n 110 (354)
T 3nmw_A 31 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 110 (354)
T ss_dssp C-----CCCCCCCGGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 4666655555778888999999999999975 59999999999 99999998421 11 11346889999999999
Q ss_pred hhhcChhhHHHHhhcCc-hHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc-cccCCccchhh
Q psy4858 284 LFKHSEGTCSDVIGLGG-LDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL-AFHNDDNIKYY 361 (979)
Q Consensus 284 lfkHSe~t~~~lV~~Gg-l~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L-a~s~dd~vr~~ 361 (979)
|-.++++++..+...|| |++|+.+|+++++++++.|+.||.|||......++..+++.|+++.|+.+ ..++++.++..
T Consensus 111 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~ 190 (354)
T 3nmw_A 111 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 190 (354)
T ss_dssp HTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHH
Confidence 96677778888876666 99999999999999999999999999876556788999999999999996 56677789999
Q ss_pred HHHHHHHHhc-chHHHHHHHhhhhHHHHH-hhCCccchHhhhhcCChh----h-----hhhhhhh-c----c----cCCC
Q psy4858 362 ACLAIAVLVA-NTEIEAAVLKSVQEAAVL-KSGTLDLVEPFVMSHSPS----E-----FAKSNLA-H----A----HGQN 421 (979)
Q Consensus 362 A~lAla~Las-n~ei~~~~~~~~~~~~V~-~sG~l~lv~~~~~~~~P~----~-----fAr~~l~-~----~----~g~~ 421 (979)
|+.||.||++ +.+.... |+ ..|.++.+..+++..++. . .+..++. | . .-.+
T Consensus 191 A~~aL~nLs~~~~~nk~~---------i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~ 261 (354)
T 3nmw_A 191 VLSALWNLSAHCTENKAD---------ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE 261 (354)
T ss_dssp HHHHHHHHHTTCHHHHHH---------HHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHccChhhhHH---------HHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 9999999999 7788888 55 799999888888876653 1 1222332 1 1 1147
Q ss_pred chhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccCcccCc
Q psy4858 422 RNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHK 501 (979)
Q Consensus 422 ~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gEevp~k 501 (979)
.|.+++|+.+|.+...+.+.-|+..+. |... .+..+...+.+.|+|++|.++..++++...+.|..||..+-...|.+
T Consensus 262 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~-nLa~-~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 262 NNCLQTLLQHLKSHSLTIVSNACGTLW-NLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHH-HHTS-SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred cCCHHHHHHHHcCCChHHHHHHHHHHH-HHhC-CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999988788877777764 4432 24556788899999999999998888888888889998877766654
Q ss_pred CC
Q psy4858 502 LS 503 (979)
Q Consensus 502 l~ 503 (979)
.+
T Consensus 340 ~~ 341 (354)
T 3nmw_A 340 YK 341 (354)
T ss_dssp GC
T ss_pred Hh
Confidence 43
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=206.26 Aligned_cols=265 Identities=17% Similarity=0.123 Sum_probs=209.5
Q ss_pred hHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhcc------ccccccchhhhhhhHhhhhhhcChhhHHHHhhcC
Q psy4858 228 DLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCT------KNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLG 299 (979)
Q Consensus 228 ~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~t------k~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~G 299 (979)
.++|+|+++|.++.. ++||+.|++.| +.+|++|..... ....+.+.++.++.+|.||-.++++++..+...|
T Consensus 163 ~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~ 242 (458)
T 3nmz_A 163 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 242 (458)
T ss_dssp TTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcC
Confidence 467899999999964 59999999999 999999984310 0113357899999999999666666777776666
Q ss_pred c-hHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc-cccCCccchhhHHHHHHHHhc-chHHH
Q psy4858 300 G-LDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL-AFHNDDNIKYYACLAIAVLVA-NTEIE 376 (979)
Q Consensus 300 g-l~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L-a~s~dd~vr~~A~lAla~Las-n~ei~ 376 (979)
| |++|+.+|+++|++++++|+.||.|||....+.++..+++.|++..|+.+ ..++++.++..|+.||.||++ +.+.+
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 6 99999999999999999999999999876556788999999999999996 556677899999999999999 88888
Q ss_pred HHHHhhhhHHHHHhhCCccchHhhhhcCChh----h-----hhhhhhh-c---c-----cCCCchhhhhhhhccccchHH
Q psy4858 377 AAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS----E-----FAKSNLA-H---A-----HGQNRNWLQKLVPVLSSKREE 438 (979)
Q Consensus 377 ~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~----~-----fAr~~l~-~---~-----~g~~~g~L~~LvplL~s~~eE 438 (979)
.+| +...|.++.+..+++..++. . .+..++. | . .-.+.|.+++|+.+|.+...+
T Consensus 323 ~~I--------~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 323 ADI--------CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394 (458)
T ss_dssp HHH--------HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHH
T ss_pred HHH--------HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChH
Confidence 883 33899999888888876653 1 1233332 1 1 113678999999999998888
Q ss_pred HHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccCcccCcC
Q psy4858 439 ARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKL 502 (979)
Q Consensus 439 ~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gEevp~kl 502 (979)
.+.-|+..+. |.+. .+..+...+.+.|+|++|..+..+++....+.|..||..+-...|.|.
T Consensus 395 v~~~A~~aL~-nLa~-~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 395 IVSNACGTLW-NLSA-RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHHHHH-HHHS-SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHHHHHHHHH-HHHc-CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 8888777764 4432 245677888999999999999988888888889999988776666543
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.80 E-value=2e-19 Score=210.87 Aligned_cols=311 Identities=16% Similarity=0.169 Sum_probs=222.0
Q ss_pred HHhhccCCcchhH-HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc---cchhhHHHhhc-hhHHHhhhhh
Q psy4858 189 QKAWAVPTHGHEI-GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT---TENRDHVVENG-LDKVVRVACV 263 (979)
Q Consensus 189 ~~Awa~p~~~~~~-~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~---~~Nr~~Iv~~G-l~~lv~la~~ 263 (979)
+-||++-.+ .. ....-..|++.||+.+|++++.+++.++|..||.+|.++.. ++||..|++.| +.+||+|...
T Consensus 67 ~Aa~~L~~L--a~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s 144 (584)
T 3l6x_A 67 NAAAYLQHL--CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144 (584)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 345665444 32 34566789999999999999999999999999999999975 69999999999 9999999943
Q ss_pred ccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhc------------------cCChhHHHHHHHhhhh
Q psy4858 264 CTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECR------------------KNDIETLRHCAGALAN 325 (979)
Q Consensus 264 ~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r------------------~~d~~~lr~ca~ALaN 325 (979)
..+.+.++.++++|-|| ..+++++..|++ |||++|+.++. ..|+++++.|+++|.|
T Consensus 145 ----~~~~~~~e~aa~aL~nL-S~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~N 218 (584)
T 3l6x_A 145 ----ARDMDLTEVITGTLWNL-SSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRN 218 (584)
T ss_dssp ----CCSHHHHHHHHHHHHHH-TTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHH-hCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHH
Confidence 23458899999999999 888999999995 78999999872 2368999999999999
Q ss_pred hcccCCchhHHHHHh-cCCcchhcccccc------CCccchhhHHHHHHHHhcchHHH----------------------
Q psy4858 326 LSLYGGAENQEAMIK-RKVPVWLFPLAFH------NDDNIKYYACLAIAVLVANTEIE---------------------- 376 (979)
Q Consensus 326 lAl~~~~~~q~~mi~-~~~~~wL~~La~s------~dd~vr~~A~lAla~Lasn~ei~---------------------- 376 (979)
||.... .++..|++ .|++..|+.+..+ .++.++..|+.||+||+...+-+
T Consensus 219 Ls~~~~-~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 297 (584)
T 3l6x_A 219 VSSERS-EARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSP 297 (584)
T ss_dssp HTSSCH-HHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CC
T ss_pred HhcCCH-HHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccC
Confidence 998652 23566665 4556677776553 34466666777777766542100
Q ss_pred ----------------HHHH-------------hhhhHH-------------HHHhhCCccchHhhhhcCChh-----hh
Q psy4858 377 ----------------AAVL-------------KSVQEA-------------AVLKSGTLDLVEPFVMSHSPS-----EF 409 (979)
Q Consensus 377 ----------------~~~~-------------~~~~~~-------------~V~~sG~l~lv~~~~~~~~P~-----~f 409 (979)
..+| .+|+|+ +|.+.|.++.+..++.+.++. ..
T Consensus 298 ~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~ 377 (584)
T 3l6x_A 298 ARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASG 377 (584)
T ss_dssp CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred chhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 0011 145444 245577788888888887764 22
Q ss_pred hhhhhh-cccC---CCchhhhhhhhccccc--------hHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhc
Q psy4858 410 AKSNLA-HAHG---QNRNWLQKLVPVLSSK--------REEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVAS 477 (979)
Q Consensus 410 Ar~~l~-~~~g---~~~g~L~~LvplL~s~--------~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLas 477 (979)
|..|+. +... +++|.+.+||.+|.+. .++.++- |+..+.|.. ..+..+.+.+.+.|+|++|.++..
T Consensus 378 aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~-a~~tL~NL~-a~~~~~~~~I~~~g~I~~Lv~LL~ 455 (584)
T 3l6x_A 378 ALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS-ILNTINEVI-AENLEAAKKLRETQGIEKLVLINK 455 (584)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH-HHHHHHHHH-TTCHHHHHHHHHTTHHHHHHHHHT
T ss_pred HHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHH-HHHHHHHHh-cCCHHHHHHHHHCCChHHHHHHHh
Confidence 444443 2211 2678999999999985 3555543 333333443 245678889999999999999988
Q ss_pred CC--ccchhhhhhhhHhhccCcccCcCCCCCCCCCHHHHHHHHHHcCch
Q psy4858 478 CP--NAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFA 524 (979)
Q Consensus 478 Sp--nd~asklAaqaLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~ 524 (979)
++ .+...+.|..+|.. .|...+.+.=+++.||.
T Consensus 456 s~~~~~~v~k~Aa~vL~n--------------l~~~~elr~~~kk~G~~ 490 (584)
T 3l6x_A 456 SGNRSEKEVRAAALVLQT--------------IWGYKELRKPLEKEGWK 490 (584)
T ss_dssp CSSSCHHHHHHHHHHHHH--------------HHTSHHHHHHHHTTTCC
T ss_pred CCCCChHHHHHHHHHHHH--------------HHcCHHHHHHHHHcCCC
Confidence 65 66677778888773 35555655555555553
No 12
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.78 E-value=5.3e-20 Score=181.01 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=87.8
Q ss_pred CCCCCCCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCCC
Q psy4858 653 NPDKNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNES 731 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~ 731 (979)
++.+.|||||||++.|...++.+|+..|+.+|++||+|.++|.+|+ |.++|.++|++|+++|+|+||+|+.
T Consensus 16 ~~~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~-------- 87 (154)
T 3h16_A 16 TSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK-------- 87 (154)
T ss_dssp --CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHT--------
T ss_pred CCCCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhc--------
Confidence 4578999999999999668999999999999999999999999996 9999999999999999999999975
Q ss_pred cCChhHHHHHHHHHhc----CCeEEEEecCC
Q psy4858 732 ECKDWVHREIVAALQS----GCNIIPILDNF 758 (979)
Q Consensus 732 ~~SdWV~rEL~~Al~~----~k~IIPVl~~f 758 (979)
|.||+.|+..|+++ ++.|||||++.
T Consensus 88 --S~wc~~El~~~~~~~~~~~~~iiPV~~~v 116 (154)
T 3h16_A 88 --KEWPQKELDGLFQLESSGRSRILPIWHKV 116 (154)
T ss_dssp --TCCCHHHHHHHTCCCTTSCCCEEEEEESC
T ss_pred --ChHHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 68999999999876 46899999985
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.77 E-value=1.1e-18 Score=196.66 Aligned_cols=281 Identities=16% Similarity=0.131 Sum_probs=206.2
Q ss_pred HHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHh
Q psy4858 205 LCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGIL 281 (979)
Q Consensus 205 lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL 281 (979)
....|++.||+++|++++.+++.++|..|+++|.++.. ++||..|++.| +++|+++... + .+.+.++.++++|
T Consensus 36 ~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~---~-~~~~~~~~a~~aL 111 (457)
T 1xm9_A 36 AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR---T-GNAEIQKQLTGLL 111 (457)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT---C-CCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh---C-CCHHHHHHHHHHH
Confidence 34589999999999999999999999999999999974 69999999999 9999999931 2 4568999999999
Q ss_pred hhhhhcChhhHHHHhhcCchHHHHhhhc--------c--------CChhHHHHHHHhhhhhcccCCchhHHHHHhc-CCc
Q psy4858 282 EHLFKHSEGTCSDVIGLGGLDTVLFECR--------K--------NDIETLRHCAGALANLSLYGGAENQEAMIKR-KVP 344 (979)
Q Consensus 282 ~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r--------~--------~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~-~~~ 344 (979)
.||=.+ ++++..+++ ||+++|+.++. + .++++++.|+.||.||+.+ ++++..|++. |++
T Consensus 112 ~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i 187 (457)
T 1xm9_A 112 WNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLI 187 (457)
T ss_dssp HHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHH
T ss_pred HHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCH
Confidence 999555 889999999 99999999993 3 3678999999999999976 6788888886 999
Q ss_pred chhcccccc------CCccchhhHHHHHHHHhc-----------------------------------------------
Q psy4858 345 VWLFPLAFH------NDDNIKYYACLAIAVLVA----------------------------------------------- 371 (979)
Q Consensus 345 ~wL~~La~s------~dd~vr~~A~lAla~Las----------------------------------------------- 371 (979)
..|+.+..+ .++.++..|+.+|+||+.
T Consensus 188 ~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
T 1xm9_A 188 DSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP 267 (457)
T ss_dssp HHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CC
T ss_pred HHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCcc
Confidence 999988775 344444444444444431
Q ss_pred -----------------------------chHHHHHHHhhhhHH--------------HHHhhCCccchHhhhhcCChh-
Q psy4858 372 -----------------------------NTEIEAAVLKSVQEA--------------AVLKSGTLDLVEPFVMSHSPS- 407 (979)
Q Consensus 372 -----------------------------n~ei~~~~~~~~~~~--------------~V~~sG~l~lv~~~~~~~~P~- 407 (979)
++++..+...+|.|+ .|.+.|.++.+..++...++.
T Consensus 268 ~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v 347 (457)
T 1xm9_A 268 EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV 347 (457)
T ss_dssp CCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHH
T ss_pred ccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhH
Confidence 011111111233222 144688999999999887763
Q ss_pred ----hhhhhhhh-cccC---CCchhhhhhhhccccch------HHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhh
Q psy4858 408 ----EFAKSNLA-HAHG---QNRNWLQKLVPVLSSKR------EEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLK 473 (979)
Q Consensus 408 ----~fAr~~l~-~~~g---~~~g~L~~LvplL~s~~------eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~Lk 473 (979)
..|..++. +.+. ..++.+++|+.+|.+.. .+....+...+ .|. .+.+..+...+.+.|++++|.
T Consensus 348 ~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l-~ni-~~~~~~~~~~i~~~g~l~~L~ 425 (457)
T 1xm9_A 348 VRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV-RNL-MASQPQLAKQYFSSSMLNNII 425 (457)
T ss_dssp HHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH-HHH-HTTCTHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH-HHH-HhcCHHHHHHHHHcCCHHHHH
Confidence 33444443 2332 25679999999999842 34433333332 222 233445678899999999999
Q ss_pred hhhcCC-ccchhhhhhhhHhhcc
Q psy4858 474 KVASCP-NAVASKYAAQTLRLIG 495 (979)
Q Consensus 474 rLasSp-nd~asklAaqaLe~~g 495 (979)
++..++ ++-..+.|...|..+-
T Consensus 426 ~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 426 NLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHcCCCcHHHHHHHHHHHHHHH
Confidence 999988 8888888888887654
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.75 E-value=8.5e-18 Score=168.49 Aligned_cols=242 Identities=18% Similarity=0.226 Sum_probs=198.6
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
.|+++.|++.+.+++.++|..|+.+|.++... +|+..+++.| +..|+++. +. .+.++.+.+..+|.+|-.++
T Consensus 1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll----~~-~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLL----TS-TDSEVQKEAARALANIASGP 75 (252)
T ss_dssp CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH----hC-CCHHHHHHHHHHHHHHHcCC
Confidence 48899999999999999999999999999743 6999999999 99999999 33 34689999999999998888
Q ss_pred hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAV 368 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~ 368 (979)
++.+..+++.|+++.|+.+++++++++++.|+.+|.||+.. .+.++..+++.|++..|+.++.+.++.++..||.+|++
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999853 34677889999999999999999999999999999999
Q ss_pred HhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHHHHhh
Q psy4858 369 LVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 369 Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAafhl~ 448 (979)
|+.+.+-.... +...| .++.|+.+|.+...+.+..|+..++
T Consensus 155 l~~~~~~~~~~--------~~~~~-------------------------------~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 155 IASGPDEAIKA--------IVDAG-------------------------------GVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp HTTSCHHHHHH--------HHHTT-------------------------------HHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHH--------HHHCc-------------------------------CHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 99865443331 33333 5566666666655666666666653
Q ss_pred HHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccCcccC
Q psy4858 449 MEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPH 500 (979)
Q Consensus 449 ~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gEevp~ 500 (979)
+.. .....+...+.+.|+++.|.++..+++....+.+..+|..+....++
T Consensus 196 -~l~-~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 196 -NIA-SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWL 245 (252)
T ss_dssp -HHT-TSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBC
T ss_pred -HHH-cCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCc
Confidence 333 12334566788899999999999888777777788888887766654
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.75 E-value=1e-17 Score=190.85 Aligned_cols=271 Identities=18% Similarity=0.174 Sum_probs=215.4
Q ss_pred HHHHhcCChHHHHHhhcC-CChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 207 NTLRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
+.|++.|++++|++.|.. ++.++|+.||++|+|++. ++|+..|++.| ++.|+++. ++ .+.++++.+..+|.
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL----~s-~~~~v~e~A~~aL~ 168 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL----AS-PHAHISEQAVWALG 168 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHH----cC-CCHHHHHHHHHHHH
Confidence 678999999999999975 558999999999999963 59999999999 99999999 44 55799999999999
Q ss_pred hhhhcChhhHHHHhhcCchHHHHhhhccCCh-----hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCcc
Q psy4858 283 HLFKHSEGTCSDVIGLGGLDTVLFECRKNDI-----ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDN 357 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~-----~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~ 357 (979)
||-.++++.+..+++.|++++|+.++++.+. .++|.|+.+|+|++.+..+.. ......++...|+.|..+.++.
T Consensus 169 nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~~ 247 (510)
T 3ul1_B 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDPE 247 (510)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC-CHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh-HHHHHHhHHHHHHHHHhcCCHH
Confidence 9988889999999999999999999998764 468999999999988764442 2334467788899999999999
Q ss_pred chhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhh-cc-----cCCCchhhh
Q psy4858 358 IKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLA-HA-----HGQNRNWLQ 426 (979)
Q Consensus 358 vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~-~~-----~g~~~g~L~ 426 (979)
++..||.||++|+.+......+ |..+|.++.+..++...++... +..++. +. .-.+.|.++
T Consensus 248 v~~~A~~aL~~L~~~~~~~~~~--------i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~ 319 (510)
T 3ul1_B 248 VLADSCWAISYLTDGPNERIEM--------VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319 (510)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHH--------HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHhhchhhhHHH--------HHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchH
Confidence 9999999999999886555442 8899999999999988776422 222222 11 113567999
Q ss_pred hhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 427 KLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 427 ~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
.|+.||.+.+.+.|..|++.++ |.+. ........+.+.|+++.|.++..+++....+-+..||..
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~-nl~a-~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N 384 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMS-NITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN 384 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHH-HHTT-SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHH-HHHc-CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999988899888888875 4432 233456677888999999999887766555556666654
No 16
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.74 E-value=3.1e-18 Score=189.31 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=167.3
Q ss_pred HHhhccCCcchhHHHH-HHHHHHhcCC-hHHHHHhhcCCChhHHhHHHHHHHHhhc---cchhhHHHhhc-hhHHHhhhh
Q psy4858 189 QKAWAVPTHGHEIGYS-LCNTLRNCGG-MDLLISNCVEKDLDLQFSSARLLEQCLT---TENRDHVVENG-LDKVVRVAC 262 (979)
Q Consensus 189 ~~Awa~p~~~~~~~~~-lc~~ir~~Gg-ld~Li~~~~s~~~~~q~~aa~~Le~~~~---~~Nr~~Iv~~G-l~~lv~la~ 262 (979)
.-||++-.+ ..+.. .-..|+..|| +.+|++++.+++.++|..|+.+|.++.. ++||+.|++.| +.+||++..
T Consensus 103 ~Aa~aL~nL--a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~ 180 (354)
T 3nmw_A 103 YAGMALTNL--TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL 180 (354)
T ss_dssp HHHHHHHHH--TSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHH--HcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh
Confidence 457887776 33332 4455667777 9999999999999999999999999974 37999999999 999999863
Q ss_pred hccccccccchhhhhhhHhhhhhhcChhhHHHHh-hcCchHHHHhhhccCCh----hHHHHHHHhhhhhccc--CCchhH
Q psy4858 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVI-GLGGLDTVLFECRKNDI----ETLRHCAGALANLSLY--GGAENQ 335 (979)
Q Consensus 263 ~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV-~~Ggl~~Ll~l~r~~d~----~~lr~ca~ALaNlAl~--~~~~~q 335 (979)
.. .+.+..+.++++|.||=.|+++++.+++ ..|+|++|+.++++.+. ++++.|+.+|.||+.+ +++.++
T Consensus 181 ~~----~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 181 EV----KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cC----CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 32 3347889999999999667999999999 89999999999998754 5999999999999975 677888
Q ss_pred HHHHhcCCcchhccccccCCccchhhHHHHHHHHhc-chHHHHHHHhhhhHHHHHhhCCccchHhhhhcCC
Q psy4858 336 EAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA-NTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHS 405 (979)
Q Consensus 336 ~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las-n~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~ 405 (979)
..|++.|++..|+.+..++++.+|..||.||+||+. |++...+ |.+.|.++.+..++++.+
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~---------i~~~G~i~~Lv~LL~s~~ 318 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA---------LWDMGAVSMLKNLIHSKH 318 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH---------HHHTTHHHHHHTTTTCSS
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHH---------HHHCCCHHHHHHHHhCCC
Confidence 889999999999999999999999999999999994 7887777 666666555544444433
No 17
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=202.27 Aligned_cols=272 Identities=16% Similarity=0.105 Sum_probs=215.4
Q ss_pred HHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhh
Q psy4858 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEH 283 (979)
Q Consensus 206 c~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~ 283 (979)
|..|.+.|++.+|+.++.+++.++|..||.+|.++.. .+||+.|++.| +.+|+.|...++ ...++.++.+|.|
T Consensus 488 ~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~-----~~~k~~Aa~AL~n 562 (810)
T 3now_A 488 ITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT-----EKGKRHATQALAR 562 (810)
T ss_dssp HHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSC-----HHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCC-----HHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999975 49999999999 999999995443 3678999999999
Q ss_pred hhhcChh-hHHH-HhhcCchHHHHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchh
Q psy4858 284 LFKHSEG-TCSD-VIGLGGLDTVLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKY 360 (979)
Q Consensus 284 lfkHSe~-t~~~-lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~ 360 (979)
|-.+++. .... -...|++++|+.+|... +..++..|+.||.|||-.. ..++..|++.|++..|+.|+++.++.||-
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~-d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~ 641 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN-ESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSCCTTHHH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence 9444332 2110 01247999999999866 4455678999999998653 46678899999999999999999999999
Q ss_pred hHHHHHHHHhcchHHHHHHHhhhhHHHHHh-hCCccchHhhhhcCChh-----hhhhhhhhc-ccC-----CC-chhhhh
Q psy4858 361 YACLAIAVLVANTEIEAAVLKSVQEAAVLK-SGTLDLVEPFVMSHSPS-----EFAKSNLAH-AHG-----QN-RNWLQK 427 (979)
Q Consensus 361 ~A~lAla~Lasn~ei~~~~~~~~~~~~V~~-sG~l~lv~~~~~~~~P~-----~fAr~~l~~-~~g-----~~-~g~L~~ 427 (979)
.|+-+|+||+++++.+.. ++. .|.++++..++.+.++. ..|..++.. ... .+ +||+++
T Consensus 642 ~A~~~L~NLa~~~~~~~~---------~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~ 712 (810)
T 3now_A 642 AAAQCLCNLVMSEDVIKM---------FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDI 712 (810)
T ss_dssp HHHHHHHHHTTSHHHHHH---------HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHH
T ss_pred HHHHHHHHHhCChHHHHH---------HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHH
Confidence 999999999999998888 554 68888888888887763 445555542 111 23 789999
Q ss_pred hhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCC---ccchhhhhhhhHhhc
Q psy4858 428 LVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP---NAVASKYAAQTLRLI 494 (979)
Q Consensus 428 LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSp---nd~asklAaqaLe~~ 494 (979)
|+.||.+...+.|..|++.++ |... .+......+.+.|++++|.++..++ +.-..+.|..+|+.+
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~-NL~~-~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIIL-NMIN-AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHH-HHHT-TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHH-HHHh-CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 999999999999988888875 4432 2334567789999999999998754 334455577777653
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.72 E-value=4.2e-17 Score=165.40 Aligned_cols=234 Identities=22% Similarity=0.253 Sum_probs=189.6
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
..+++.++.++.+++.++|..|+.+|.+++. .+|+..+++.| +..|+++. +. .+.++++.+..+|.+|-.++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL----~~-~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL----SS-PNEQILQEALWALSNIASGG 85 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGG----GC-SCHHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHH----cC-CCHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999988864 58999999999 89999999 33 34689999999999997789
Q ss_pred hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhH-HHHHhcCCcchhccccccCCccchhhHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQ-EAMIKRKVPVWLFPLAFHNDDNIKYYACLAIA 367 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q-~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla 367 (979)
++++..+++.|+++.|+.+++++++++++.|+.+|.||+.+. .++ ..+++.|+++.|+.++.+.++.++..||.+|+
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998765 555 77899999999999999998899999999999
Q ss_pred HHhcch-HHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHHHH
Q psy4858 368 VLVANT-EIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFH 446 (979)
Q Consensus 368 ~Lasn~-ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAafh 446 (979)
+|+.+. +.... +...| .++.|+.+|.+...+.+..|+..
T Consensus 164 ~l~~~~~~~~~~---------~~~~~-------------------------------~i~~L~~ll~~~~~~v~~~a~~~ 203 (252)
T 4db8_A 164 NIASGGNEQIQA---------VIDAG-------------------------------ALPALVQLLSSPNEQILQEALWA 203 (252)
T ss_dssp HHTTSCHHHHHH---------HHHTT-------------------------------CHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHcCChHHHHH---------HHHCC-------------------------------CHHHHHHHHCCCCHHHHHHHHHH
Confidence 999864 33333 44444 45556666665555666666555
Q ss_pred hhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhc
Q psy4858 447 FCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494 (979)
Q Consensus 447 l~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~ 494 (979)
++ +.. .....+...+.+.|+++.|.++..+++....+.|..+|..+
T Consensus 204 L~-~l~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l 249 (252)
T 4db8_A 204 LS-NIA-SGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249 (252)
T ss_dssp HH-HHT-TSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred HH-HHh-cCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 53 232 22334566778889999999998877776666677776643
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=190.05 Aligned_cols=201 Identities=17% Similarity=0.154 Sum_probs=169.1
Q ss_pred hhccCCcchhHHHH-HHHHHHhcCC-hHHHHHhhcCCChhHHhHHHHHHHHhhc---cchhhHHHhhc-hhHHHhhhhhc
Q psy4858 191 AWAVPTHGHEIGYS-LCNTLRNCGG-MDLLISNCVEKDLDLQFSSARLLEQCLT---TENRDHVVENG-LDKVVRVACVC 264 (979)
Q Consensus 191 Awa~p~~~~~~~~~-lc~~ir~~Gg-ld~Li~~~~s~~~~~q~~aa~~Le~~~~---~~Nr~~Iv~~G-l~~lv~la~~~ 264 (979)
||++-.+ ..+.. .-..|+..|| +.+|++++.+++.++|..|+.+|.++.. ++||..|++.| +.+||++....
T Consensus 221 a~aL~nL--a~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s 298 (458)
T 3nmz_A 221 GMALTNL--TFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 298 (458)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHH--hCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC
Confidence 5777666 33332 3334656667 9999999999999999999999999964 37999999998 99999986322
Q ss_pred cccccccchhhhhhhHhhhhhhcChhhHHHHh-hcCchHHHHhhhccCCh----hHHHHHHHhhhhhccc--CCchhHHH
Q psy4858 265 TKNINSVEHSRVGTGILEHLFKHSEGTCSDVI-GLGGLDTVLFECRKNDI----ETLRHCAGALANLSLY--GGAENQEA 337 (979)
Q Consensus 265 tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV-~~Ggl~~Ll~l~r~~d~----~~lr~ca~ALaNlAl~--~~~~~q~~ 337 (979)
.+.+..+.++++|.||-.|+++++.+++ ..|||++|+.++++.+. ++++.|+.+|.||+.+ +++.++..
T Consensus 299 ----~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 299 ----KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp ----CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3458889999999999778999999998 89999999999998754 4899999999999976 77788888
Q ss_pred HHhcCCcchhccccccCCccchhhHHHHHHHHh-cchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCCh
Q psy4858 338 MIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV-ANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSP 406 (979)
Q Consensus 338 mi~~~~~~wL~~La~s~dd~vr~~A~lAla~La-sn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P 406 (979)
|++.|++..|+.|..++++.+|..||.||+||+ .|++...+ |++.|.++.+..++++.++
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~---------i~~~G~I~~Lv~LL~s~~~ 435 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA---------LWDMGAVSMLKNLIHSKHK 435 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHH---------HHHHTHHHHHHTTTTCSSH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHH---------HHHCCCHHHHHHHHhCCCH
Confidence 999999999999999999999999999999999 57888887 7778877766666666555
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.71 E-value=1.1e-16 Score=180.43 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=148.3
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChh
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEG 290 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~ 290 (979)
.++.|++.+.+++.++|+.|+.+|.++.. +++|..|++.| +++||++. ++ .+.+.++.++++|.||-.++++
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL----~s-~~~~~~~~A~~aL~nLa~~~~~ 77 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL----RS-PNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT----TS-SCHHHHHHHHHHHHHHHSSCHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH----cC-CCHHHHHHHHHHHHHHhcCCHH
Confidence 57899999999999999999999999863 36788999999 99999999 33 4568999999999999778899
Q ss_pred hHHHHhhcCchHHHHhhhc-cCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc--------cCC------
Q psy4858 291 TCSDVIGLGGLDTVLFECR-KNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF--------HND------ 355 (979)
Q Consensus 291 t~~~lV~~Ggl~~Ll~l~r-~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~--------s~d------ 355 (979)
++..+++.||++.|+.+|+ ++++++++.|+.||.|||.+ +.++..+++ |+++.|+.+.. +..
T Consensus 78 ~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 9999999999999999999 78999999999999999987 467788999 99999999994 222
Q ss_pred --ccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhh-CCccchHhhhhc
Q psy4858 356 --DNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKS-GTLDLVEPFVMS 403 (979)
Q Consensus 356 --d~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~s-G~l~lv~~~~~~ 403 (979)
..+...|+.||.||+.+++.... |.+. |.++.+..++..
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~---------i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQT---------MRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHH---------HTTSTTHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHH---------HHHcCCCHHHHHHHHHh
Confidence 24455999999999999887777 7776 777766666654
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.71 E-value=2.1e-17 Score=199.83 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=222.8
Q ss_pred hhccCCcchhHHHHHHHHHHh-cCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cc------------------------
Q psy4858 191 AWAVPTHGHEIGYSLCNTLRN-CGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TE------------------------ 244 (979)
Q Consensus 191 Awa~p~~~~~~~~~lc~~ir~-~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~------------------------ 244 (979)
+|+|--+ ......|..|+. .|++..|+.++.+++..+|+.|++.|.||++ ++
T Consensus 400 veaLayL--S~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 400 ADGLAYL--TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHHHHH--TTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHHHHH--hCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 4665555 557889999995 6999999999999999999999999999986 32
Q ss_pred ------hh---hHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChh
Q psy4858 245 ------NR---DHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIE 314 (979)
Q Consensus 245 ------Nr---~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~ 314 (979)
++ ..|++.| +.+|+.|. ++ .+.+++..+..+|.|+ ..+++++..|++.||+++|+.+++++++.
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL----~s-~s~~vqe~Aa~aL~NL-A~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~ 551 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALA----KT-ESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEK 551 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHH----TC-CCHHHHHHHHHHHHHH-HTSHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHH----cC-CCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHccCCHH
Confidence 33 6889999 99999999 43 3458888999999999 77788999999999999999999999999
Q ss_pred HHHHHHHhhhhhcccCCchhHHHH---HhcCCcchhccccccCCc-cchhhHHHHHHHHhcc-hHHHHHHHhhhhHHHHH
Q psy4858 315 TLRHCAGALANLSLYGGAENQEAM---IKRKVPVWLFPLAFHNDD-NIKYYACLAIAVLVAN-TEIEAAVLKSVQEAAVL 389 (979)
Q Consensus 315 ~lr~ca~ALaNlAl~~~~~~q~~m---i~~~~~~wL~~La~s~dd-~vr~~A~lAla~Lasn-~ei~~~~~~~~~~~~V~ 389 (979)
+++.||.||+||+.++.+. ..+ .-.+++..|+.|..+.++ ..++.||.||+||++. ++.... |+
T Consensus 552 ~k~~Aa~AL~nL~~~~~p~--~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~---------Ii 620 (810)
T 3now_A 552 GKRHATQALARIGITINPE--VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQR---------II 620 (810)
T ss_dssp HHHHHHHHHHHHHHHSCHH--HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH---------HH
T ss_pred HHHHHHHHHHHHhcCCChh--hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHH---------HH
Confidence 9999999999999887543 111 113588999999986544 5578999999999998 566667 88
Q ss_pred hhCCccchHhhhhcCChhhh-----hhhhhhc-c-----cCCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcC
Q psy4858 390 KSGTLDLVEPFVMSHSPSEF-----AKSNLAH-A-----HGQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQG 458 (979)
Q Consensus 390 ~sG~l~lv~~~~~~~~P~~f-----Ar~~l~~-~-----~g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~ 458 (979)
+.|.++.+..++...+|..- +.+|+.. . ...+.|.++.|+.||.++..+.|..|+..++ +... ....
T Consensus 621 ~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa-nLt~-~s~~ 698 (810)
T 3now_A 621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA-IITS-VSVK 698 (810)
T ss_dssp HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH-HHHH-HCHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH-HHhC-CCHH
Confidence 89999999999988777422 2333321 1 1134689999999999988889888887775 3431 1234
Q ss_pred Cchhhhh-hCccchhhhhhcCCccchhhhhhhhHhhcc
Q psy4858 459 KTDIFKE-IGAIEPLKKVASCPNAVASKYAAQTLRLIG 495 (979)
Q Consensus 459 n~~~F~e-iGaIe~LkrLasSpnd~asklAaqaLe~~g 495 (979)
+.+.+.+ .|+++.|.++..+++.-..+-|..+|..+.
T Consensus 699 ~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556666 899999999998887766666766766443
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.70 E-value=9.2e-17 Score=183.41 Aligned_cols=271 Identities=18% Similarity=0.173 Sum_probs=214.2
Q ss_pred HHHHhcCChHHHHHhhcC-CChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 207 NTLRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s-~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
+.|++.|++..|++.+.. .+.++|+.||++|.+++. ++++..|++.| +..|+.|. ++ .+.+++..+..+|.
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL----~s-~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL----AS-PHAHISEQAVWALG 187 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----cC-CCHHHHHHHHHHHH
Confidence 578899999999999965 558899999999999974 48899999999 99999998 44 55689999999999
Q ss_pred hhhhcChhhHHHHhhcCchHHHHhhhccCCh-----hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCcc
Q psy4858 283 HLFKHSEGTCSDVIGLGGLDTVLFECRKNDI-----ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDN 357 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~-----~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~ 357 (979)
||-.++++.+..+++.|++++|+.++...+. .+++.|+.+|+|++.+..+.. ......++.+.|+.|..+.++.
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~-~~~~~~~~lp~L~~LL~~~~~~ 266 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP-PLDAVEQILPTLVRLLHHNDPE 266 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCC-CHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchh-hHHHHhhHHHHHHHHhcCCcHH
Confidence 9977889999999999999999999998753 468999999999987664432 2334467788899999999999
Q ss_pred chhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhh-cc-----cCCCchhhh
Q psy4858 358 IKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLA-HA-----HGQNRNWLQ 426 (979)
Q Consensus 358 vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~-~~-----~g~~~g~L~ 426 (979)
++..||.||++|+.+.+-.... |..+|.++.+..++...++... +..++. +. .-.+.|.++
T Consensus 267 v~~~a~~aL~~l~~~~~~~~~~--------v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~ 338 (529)
T 3tpo_A 267 VLADSCWAISYLTDGPNERIEM--------VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 338 (529)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHH--------HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHhhhhhhhhHHH--------HHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHH
Confidence 9999999999999986555442 8899999999999988776422 222222 11 113567999
Q ss_pred hhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 427 KLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 427 ~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
.|+.||.+...+.+..|++.++ |.+. ........+.+.|+++.|.++..+++.-..+-|..||..
T Consensus 339 ~L~~LL~~~~~~i~~~a~~aL~-nl~~-~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n 403 (529)
T 3tpo_A 339 VFPSLLTNPKTNIQKEATWTMS-NITA-GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN 403 (529)
T ss_dssp GHHHHTTCSSHHHHHHHHHHHH-HHHT-SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-HHhc-ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999988888888888775 3432 233345667788999999998887766555556666653
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.70 E-value=7.9e-17 Score=188.95 Aligned_cols=267 Identities=13% Similarity=0.084 Sum_probs=198.8
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhh--ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhc-
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKH- 287 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~--~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkH- 287 (979)
.++++.|++.+.+++.++|+.||..|.++. .++||..|++.| +.+||++. ++ .+.++++.++++|.||=.|
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL----~s-~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL----DH-PKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG----GC-SSHHHHHHHHHHHHHHTSSS
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH----CC-CCHHHHHHHHHHHHHHHccC
Confidence 688999999999999999999999999997 359999999999 99999999 44 4569999999999999544
Q ss_pred ChhhHHHHhhcCchHHHHhhhcc-CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc--------------
Q psy4858 288 SEGTCSDVIGLGGLDTVLFECRK-NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF-------------- 352 (979)
Q Consensus 288 Se~t~~~lV~~Ggl~~Ll~l~r~-~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~-------------- 352 (979)
+++++..|++.|||++||.+|++ .+.++++++++||.|||.+. .++..|++ +++..|+.|..
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHHH-HTHHHHHHHTHHHHHCCC-------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHHh-ccHHHHHHHHhcccccccccccccc
Confidence 69999999999999999999998 58999999999999999854 88899996 46778887651
Q ss_pred ----cCCccchhhHHHHHHHHhcch-HHHHHHHhhhhHHHHHhh-CCccchHhhhhcC----Chh-------hhhhhhhh
Q psy4858 353 ----HNDDNIKYYACLAIAVLVANT-EIEAAVLKSVQEAAVLKS-GTLDLVEPFVMSH----SPS-------EFAKSNLA 415 (979)
Q Consensus 353 ----s~dd~vr~~A~lAla~Lasn~-ei~~~~~~~~~~~~V~~s-G~l~lv~~~~~~~----~P~-------~fAr~~l~ 415 (979)
+.+..++++|+.+|+||+++. +...+ |++. |.++.+..+++.. .+. ..+..|+.
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~---------i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRK---------LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHH---------HHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHH---------HHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 224589999999999999985 45777 6664 4445555555532 221 22222221
Q ss_pred c---------------------------ccCC----Cchhhhhhhhccc-cchHHHHHHHHHHhhHHhhhhh---hcCCc
Q psy4858 416 H---------------------------AHGQ----NRNWLQKLVPVLS-SKREEARNLAAFHFCMEAGIKK---QQGKT 460 (979)
Q Consensus 416 ~---------------------------~~g~----~~g~L~~LvplL~-s~~eE~q~lAafhl~~ea~iKk---~q~n~ 460 (979)
. +.|. ..+.++.|+.+|. +.+.+.+.-|+..+ .|...-+ ...+.
T Consensus 270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL-~nL~ag~~~~~~~~~ 348 (584)
T 3l6x_A 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI-QNLCAGRWTYGRYIR 348 (584)
T ss_dssp TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHSSCSHHHHHHH
T ss_pred ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHH-HHHHcCCccccHHHH
Confidence 1 1111 1233567788895 46677766666654 2343100 11233
Q ss_pred hhhhhhCccchhhhhhcCCccchhhhhhhhHhhccC
Q psy4858 461 DIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGE 496 (979)
Q Consensus 461 ~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gE 496 (979)
..+.+.|+++.|.++..++++-..+-+..||.-+..
T Consensus 349 ~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~ 384 (584)
T 3l6x_A 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAV 384 (584)
T ss_dssp HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 456777999999999998877666667888877654
No 24
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.70 E-value=2.3e-18 Score=169.20 Aligned_cols=129 Identities=19% Similarity=0.296 Sum_probs=89.9
Q ss_pred CCCCCCCCCeeEecccCCccchHHHHHHHHHh--cCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcc
Q psy4858 651 EDNPDKNLDVFISYRRSNGSQLASLLKVHLEL--RQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCME 727 (979)
Q Consensus 651 ~~~~~~~yDVFISYRR~Dg~~~As~L~e~Le~--~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~ 727 (979)
+....+.|||||||++.| ..++.+|...|+. .|+++|+|.+++.+|+ +.++|.++|++|+.+|+|+||+|+.
T Consensus 4 ~~r~~k~YDvFISy~~~D-~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~---- 78 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQ---- 78 (146)
T ss_dssp CCTTSSSEEEEEECCGGG-HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHH----
T ss_pred CCCCCCcceEEEeCChhh-HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECccccc----
Confidence 344567999999999999 5678999999998 5999999999999995 9999999999999999999999985
Q ss_pred cCCCcCChhHHHHHHHHHhcC----CeEEEEecCCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHHHHHh
Q psy4858 728 DNESECKDWVHREIVAALQSG----CNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLERFMR 798 (979)
Q Consensus 728 ~~i~~~SdWV~rEL~~Al~~~----k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~ 798 (979)
|.||+.|+..|+++. +.||||+++. +..++|+.|+.+ .++++.. .+..+.++.+.|.
T Consensus 79 ------S~wc~~El~~al~~~~~~~~~vIpv~~~v---~~~~lp~~Lr~~---~~id~~~--~d~~f~~l~~~v~ 139 (146)
T 3ub2_A 79 ------DPWCKYQMLQALTEAPGAEGCTIPLLSGL---SRAAYPPELRFM---YYVDGRG--PDGGFRQVKEAVM 139 (146)
T ss_dssp ------CHHHHHHHHHHHHTSSSSSSEEEEEECSC---CGGGSCGGGGGS---CCEETTS--GGGGHHHHHHHHH
T ss_pred ------CHHHHHHHHHHHHHHhhcCCcEEEEEcCC---ChhhCCHHHhCe---eeeeccC--hHhhHHHHHHHHH
Confidence 699999999999863 4789999874 455899988765 4444432 2345555555554
No 25
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.69 E-value=9.6e-17 Score=160.83 Aligned_cols=188 Identities=19% Similarity=0.295 Sum_probs=164.3
Q ss_pred HHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
..+..+++.|+++.|++.+.+++.+++..|+.+|.++.. +++++.+++.| +..|+++.. . .+.++.+.+.++
T Consensus 35 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----~-~~~~v~~~a~~~ 109 (252)
T 4hxt_A 35 SAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT----S-TDSEVQKEAARA 109 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT----C-SSHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc----C-CCHHHHHHHHHH
Confidence 578889999999999999999999999999999999974 69999999999 999999993 3 456899999999
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchh
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKY 360 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~ 360 (979)
|.+|..++++.+..+++.|+++.|+.++++.++++++.|+.+|.||+... ..+...+++.|++..|+.++.+.++.+|.
T Consensus 110 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 188 (252)
T 4hxt_A 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTSTDSEVQK 188 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCcCHHHHHHHHCCCCHHHHH
Confidence 99996699999999999999999999999999999999999999998754 34457788999999999999999999999
Q ss_pred hHHHHHHHHhc-chHHHHHHHhhhhHHHHHhhCCccchHhhhhcCCh
Q psy4858 361 YACLAIAVLVA-NTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSP 406 (979)
Q Consensus 361 ~A~lAla~Las-n~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P 406 (979)
.|+.+|++|+. +++.... +...|.++.+..++...+|
T Consensus 189 ~a~~~L~~l~~~~~~~~~~---------l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 189 EAARALANIASGPTSAIKA---------IVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp HHHHHHHHHTTSBHHHHHH---------HHHTTHHHHHHHGGGCSCH
T ss_pred HHHHHHHHHHcCCHHHHHH---------HHHCCCHHHHHHHHCCCcH
Confidence 99999999998 4555555 6666666666666655444
No 26
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.69 E-value=1.5e-16 Score=161.34 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGT 278 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~ 278 (979)
....+..+++.|+++.|++.+.+++.++|..|+.+|.++.. ++|+..|++.| +..|+++. +. .+.++.+.+.
T Consensus 43 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~-~~~~v~~~a~ 117 (252)
T 4db8_A 43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL----SS-PNEQILQEAL 117 (252)
T ss_dssp HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG----GC-SCHHHHHHHH
T ss_pred CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH----cC-CCHHHHHHHH
Confidence 45567789999999999999999999999999999999974 59999999998 99999999 33 4568999999
Q ss_pred hHhhhhhhcChhhH-HHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCcc
Q psy4858 279 GILEHLFKHSEGTC-SDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDN 357 (979)
Q Consensus 279 giL~~lfkHSe~t~-~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~ 357 (979)
++|.|| ...++++ ..+++.|+++.|+.+++.+++.+++.|+.+|.||+... +.++..+++.|++..|+.++.+.++.
T Consensus 118 ~~L~~l-~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~ 195 (252)
T 4db8_A 118 WALSNI-ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQ 195 (252)
T ss_dssp HHHHHH-TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCSSHH
T ss_pred HHHHHh-hcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCCCHH
Confidence 999999 5555555 99999999999999999999999999999999998644 45667788999999999999999999
Q ss_pred chhhHHHHHHHHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCCh
Q psy4858 358 IKYYACLAIAVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSP 406 (979)
Q Consensus 358 vr~~A~lAla~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P 406 (979)
++..||.+|++|+.. ++.... +.+.|.++.+..++...+|
T Consensus 196 v~~~a~~~L~~l~~~~~~~~~~---------~~~~g~i~~L~~ll~~~~~ 236 (252)
T 4db8_A 196 ILQEALWALSNIASGGNEQKQA---------VKEAGALEKLEQLQSHENE 236 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHH---------HHHTTHHHHHHTTTTCSSS
T ss_pred HHHHHHHHHHHHhcCCHHHHHH---------HHHCCcHHHHHHHhCCCCH
Confidence 999999999999964 555555 6677777666666666555
No 27
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.68 E-value=1.2e-16 Score=180.09 Aligned_cols=289 Identities=18% Similarity=0.183 Sum_probs=222.1
Q ss_pred HhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccc
Q psy4858 190 KAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTK 266 (979)
Q Consensus 190 ~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk 266 (979)
-||++..++.. .......++..|++++|+..+.+++.+++..|+.+|.++.. +++|+.|++.| +.+|+.+..
T Consensus 138 A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~---- 212 (528)
T 4b8j_A 138 AAWALTNIASG-TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN---- 212 (528)
T ss_dssp HHHHHHHHHTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCC----
T ss_pred HHHHHHHHhCC-CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHh----
Confidence 46777776221 25677889999999999999999999999999999999974 47899999998 999999983
Q ss_pred cccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcch
Q psy4858 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVW 346 (979)
Q Consensus 267 ~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~w 346 (979)
...+.++.+.++.+|.+|..+. ......+..|+++.|+.+++..|++++..|+.||.||+-.. +.....+++.|++..
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~v~~ 290 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPR 290 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC-HHHHHHHHHTTCHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCHHHH
Confidence 3345689999999999996665 34444556899999999999999999999999999998443 333356789999999
Q ss_pred hccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcC-Chh-----hhhhhhhhc-cc-
Q psy4858 347 LFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSH-SPS-----EFAKSNLAH-AH- 418 (979)
Q Consensus 347 L~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~-~P~-----~fAr~~l~~-~~- 418 (979)
|+.++.+.++.++..|+.+|++|+......... +...|.++.+..++... +|. .++.+++.. ..
T Consensus 291 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~ 362 (528)
T 4b8j_A 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC--------IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD 362 (528)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH--------HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH--------HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999964444432 78899999888888876 653 223444432 10
Q ss_pred ----CCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhc
Q psy4858 419 ----GQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494 (979)
Q Consensus 419 ----g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~ 494 (979)
-...|.++.|+.+|.+...+.+..|+..++ +.+......+...+.+.|+++.|.++..+++.-....+..+|..+
T Consensus 363 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~-nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 363 QIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAIS-NATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI 441 (528)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 024478999999999887788777777664 343221234556677789999999998776655455555565544
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.67 E-value=4.7e-16 Score=153.80 Aligned_cols=183 Identities=19% Similarity=0.197 Sum_probs=157.0
Q ss_pred HhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhh
Q psy4858 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFK 286 (979)
Q Consensus 210 r~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfk 286 (979)
+..|+..+|+.++.+++.++|..|+.+|.++.. ++++..|++.| +..|+++. +. .+.++...+..+|.||-.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~~-~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL----SS-PNEQILQEALWALSNIAS 83 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHHHHTT
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH----cC-CCHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999973 48999999999 99999999 33 356889999999999977
Q ss_pred cChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHH
Q psy4858 287 HSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAI 366 (979)
Q Consensus 287 HSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAl 366 (979)
++++.+..+++.|+++.|+.+++++|+.+++.|+.||.||+... ......+++.|++..|+.++.+.++.++.+||.||
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998743 44556788999999999999999999999999999
Q ss_pred HHHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh
Q psy4858 367 AVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS 407 (979)
Q Consensus 367 a~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~ 407 (979)
.+|+.+ ++.... +...|.++.+..++...+|.
T Consensus 163 ~~l~~~~~~~~~~---------~~~~g~i~~L~~ll~~~~~~ 195 (210)
T 4db6_A 163 SNIASGGNEQKQA---------VKEAGALEKLEQLQSHENEK 195 (210)
T ss_dssp HHHHTSCHHHHHH---------HHHTTHHHHHHHGGGCSCHH
T ss_pred HHHHcCCcHHHHH---------HHHCCCHHHHHHHHhCCCHH
Confidence 999998 555555 77777777777776665553
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.65 E-value=4.3e-16 Score=163.84 Aligned_cols=173 Identities=19% Similarity=0.213 Sum_probs=145.6
Q ss_pred ChHHHHHhhcCCCh--hHHhHHHHHHHHhh--ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 214 GMDLLISNCVEKDL--DLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 214 gld~Li~~~~s~~~--~~q~~aa~~Le~~~--~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
.++.|++.+.+++. ++|+.||..|.++. .++||..|++.| +++||++. ++ .+.++++.++++|.||=.++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL----~s-~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL----KV-QNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG----GC-CCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH----cC-CCHHHHHHHHHHHHHHHhCC
Confidence 57899999999998 89999999999986 358999999999 99999999 44 45699999999999995568
Q ss_pred hhhHHHHhhcCchHHHHhhhcc-CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc---------------
Q psy4858 289 EGTCSDVIGLGGLDTVLFECRK-NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF--------------- 352 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll~l~r~-~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~--------------- 352 (979)
++++..|++.|||++|+.+|++ ++.+++++|++||.|||.+. .++..|++. ++..|+.+..
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~--~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG--GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh--hhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 9999999999999999999985 69999999999999999887 677888875 4666776542
Q ss_pred -cCCccchhhHHHHHHHHhc-chHHHHHHHhhhhHHHHHhh-CCccchHhhhhc
Q psy4858 353 -HNDDNIKYYACLAIAVLVA-NTEIEAAVLKSVQEAAVLKS-GTLDLVEPFVMS 403 (979)
Q Consensus 353 -s~dd~vr~~A~lAla~Las-n~ei~~~~~~~~~~~~V~~s-G~l~lv~~~~~~ 403 (979)
+.+..++++|+++|+||++ +++.+.+ |.+. |.++.+..++++
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~---------~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKA---------MRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHH---------HHTSTTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHH---------HHHCCCcHHHHHHHHHh
Confidence 1244889999999999998 6799999 7766 445655555554
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.64 E-value=9.9e-16 Score=170.50 Aligned_cols=274 Identities=16% Similarity=0.156 Sum_probs=217.3
Q ss_pred HHHHHHh-cCChHHHHHhhcCC-ChhHHhHHHHHHHHhh-ccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 205 LCNTLRN-CGGMDLLISNCVEK-DLDLQFSSARLLEQCL-TTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 205 lc~~ir~-~Ggld~Li~~~~s~-~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
....+.. .|++++|++.+.++ +.+++..|+++|.++. .++||..|++.| +.+|+++. +. .+.+++..+..+
T Consensus 50 ~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL----~~-~~~~v~~~a~~~ 124 (529)
T 1jdh_A 50 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKML----GS-PVDSVLFYAITT 124 (529)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHH
T ss_pred cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHH----cC-CCHHHHHHHHHH
Confidence 3445554 48999999999765 8999999999999996 458999999999 99999998 33 446899999999
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCc-cch
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD-NIK 359 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd-~vr 359 (979)
|.||..++++.+..+++.|+++.|+.+++++++.+++.++.+|.|++. +.+.++..+++.|++..|+.++.+.++ .++
T Consensus 125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~-~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~ 203 (529)
T 1jdh_A 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLL 203 (529)
T ss_dssp HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHH
T ss_pred HHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh-CCHHHHHHHHHCCCHHHHHHHHHhCChHHHH
Confidence 999988888899999999999999999999999999999999999987 446778889999999999999998776 567
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhh-c--ccCCCchhhhhhhhc
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLA-H--AHGQNRNWLQKLVPV 431 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~-~--~~g~~~g~L~~Lvpl 431 (979)
..|+.+|.+|+.+++.... +.+.|.++.+..++...++... +..++. . ......+.++.|+.+
T Consensus 204 ~~a~~~L~~l~~~~~~~~~---------~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~l 274 (529)
T 1jdh_A 204 WTTSRVLKVLSVCSSNKPA---------IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 274 (529)
T ss_dssp HHHHHHHHHHTTSTTHHHH---------HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccHHH---------HHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHH
Confidence 7888899999999999888 8899999988888888776422 222222 1 112346789999999
Q ss_pred cccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcC-Cc-cchhhhhhhhHhhcc
Q psy4858 432 LSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASC-PN-AVASKYAAQTLRLIG 495 (979)
Q Consensus 432 L~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasS-pn-d~asklAaqaLe~~g 495 (979)
|.+...+.+..|+..++ +.. .....+...+.+.|+++.|.++... +. +....-+..+|..+.
T Consensus 275 l~~~~~~v~~~a~~~L~-~L~-~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 275 LGSDDINVVTCAAGILS-NLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp TTCSCHHHHHHHHHHHH-HHT-TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHH-HHh-cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 99988888777776654 343 1223467788899999999988863 22 233344666666553
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.64 E-value=9.1e-16 Score=173.74 Aligned_cols=290 Identities=19% Similarity=0.199 Sum_probs=224.3
Q ss_pred HhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccc
Q psy4858 190 KAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTK 266 (979)
Q Consensus 190 ~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk 266 (979)
-||++..+... .......++..|+++.|++.+.+++.+++..|+.+|.++.. +++|+.++..| +.+|+++..
T Consensus 151 A~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~---- 225 (530)
T 1wa5_B 151 AAWALTNIASG-TSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN---- 225 (530)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGG----
T ss_pred HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhc----
Confidence 46776665221 23456788899999999999999999999999999999975 48999999998 999999993
Q ss_pred cccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcch
Q psy4858 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVW 346 (979)
Q Consensus 267 ~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~w 346 (979)
. .+.++.+.++.+|.+|..+.+..+...+..|+++.|+.+++..|++++..|+.+|.||+-.. +.....+++.|++..
T Consensus 226 ~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~ 303 (530)
T 1wa5_B 226 S-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEAIQAVIDVRIPKR 303 (530)
T ss_dssp S-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHH
T ss_pred c-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhcCcHHH
Confidence 3 45689999999999997777566777888999999999999999999999999999998543 345566788999999
Q ss_pred hccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-----hhhhhhhhc-ccC-
Q psy4858 347 LFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-----EFAKSNLAH-AHG- 419 (979)
Q Consensus 347 L~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-----~fAr~~l~~-~~g- 419 (979)
|+.++.+.++.++..|+.+|++|+...+..... +...|.++.+..++...++. .++..++.. ...
T Consensus 304 Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 375 (530)
T 1wa5_B 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQV--------VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQ 375 (530)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH--------HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHH--------HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999764444331 77889999888888887764 223333331 100
Q ss_pred ----CCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhc--CCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 420 ----QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQ--GKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 420 ----~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q--~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
.+.|.++.|+.+|.....+.+..|+..++ +....... .....+.+.|+++.|..+..+++......+..+|..
T Consensus 376 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~-~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~ 454 (530)
T 1wa5_B 376 IQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS-NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALEN 454 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH-HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH-HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 13578999999998877788877777764 34321112 234566788999999998876655555556666665
Q ss_pred cc
Q psy4858 494 IG 495 (979)
Q Consensus 494 ~g 495 (979)
+-
T Consensus 455 l~ 456 (530)
T 1wa5_B 455 IL 456 (530)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.64 E-value=7.2e-16 Score=152.47 Aligned_cols=176 Identities=16% Similarity=0.157 Sum_probs=154.8
Q ss_pred HhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccc
Q psy4858 190 KAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTK 266 (979)
Q Consensus 190 ~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk 266 (979)
-+|++..+.. -.......+++.||++.|++.+.+++.+++..|+.+|.++.. ++++..|++.| +..|+++. +
T Consensus 32 a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL----~ 106 (210)
T 4db6_A 32 ALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL----S 106 (210)
T ss_dssp HHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHT----T
T ss_pred HHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHH----c
Confidence 3466555521 135667889999999999999999999999999999999973 58999999998 99999999 3
Q ss_pred cccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcch
Q psy4858 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVW 346 (979)
Q Consensus 267 ~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~w 346 (979)
. .+.++.+.+.++|.||-.++++.+..+++.|+++.|+.+++++++.++++|+.||.||+.++ ..++..+++.|++..
T Consensus 107 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~ 184 (210)
T 4db6_A 107 S-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEK 184 (210)
T ss_dssp C-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHH
T ss_pred C-CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHH
Confidence 3 35689999999999998799999999999999999999999999999999999999998753 566778889999999
Q ss_pred hccccccCCccchhhHHHHHHHHhcc
Q psy4858 347 LFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 347 L~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
|+.++.+.++.+|..|+.||.+|+++
T Consensus 185 L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 185 LEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999874
No 33
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.64 E-value=1.4e-16 Score=156.57 Aligned_cols=130 Identities=20% Similarity=0.338 Sum_probs=104.2
Q ss_pred CCCCCeeEecccCCccchHHH-HHHHHHhc--CCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCC
Q psy4858 655 DKNLDVFISYRRSNGSQLASL-LKVHLELR--QFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNE 730 (979)
Q Consensus 655 ~~~yDVFISYRR~Dg~~~As~-L~e~Le~~--G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i 730 (979)
.+.|||||||++.| ..++.+ |...|+.. |+++|+|.+++.+|+ +.++|.++|++|+.+|+|+||+|+.
T Consensus 3 ~~~yDvFiSy~~~D-~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~------- 74 (149)
T 1fyx_A 3 NIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVK------- 74 (149)
T ss_dssp SCCEEEEEECCGGG-HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHH-------
T ss_pred CccceEEEECCccc-HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhc-------
Confidence 57899999999999 478885 99999986 999999999999995 9999999999999999999999986
Q ss_pred CcCChhHHHHHHHHHh-----cCCeEEEEecC-CCCCCCCCCh---HHHHHHh-hhccccccccc--HHHHHHHHHHHHh
Q psy4858 731 SECKDWVHREIVAALQ-----SGCNIIPILDN-FAWPDPEQLP---ADMRAIC-KFNGVRWIHDY--QDACVDKLERFMR 798 (979)
Q Consensus 731 ~~~SdWV~rEL~~Al~-----~~k~IIPVl~~-f~~pd~e~LP---edLr~la-~~ngi~w~~~y--q~a~IdkIvr~I~ 798 (979)
|.||+.|+..|++ .+..||||+++ .. ...+| ..|+.+. ....+.|..+. ...+-++|-.+|.
T Consensus 75 ---S~wc~~El~~a~~~~~~~~~~~vIpv~~~~i~---~~~~p~~~~~Lr~~l~~~t~l~W~~~~~~~~~FW~~Lr~al~ 148 (149)
T 1fyx_A 75 ---SEWXKYELDFSHFRLFDENNDAAILILLEPIE---KKAIPQRFXKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIK 148 (149)
T ss_dssp ---HHTHHHHSCCSCCTTCGGGTTCCEEEESSCCC---TTTSCSSCHHHHHHHHHTCSEECCSSGGGHHHHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHHHhcCCCEEEEEEecCCC---hhhcChHHHHHHHHhcCCCEEECCCCCccchHHHHHHHHHhc
Confidence 5899999999874 35679999885 32 23455 4666643 44578898642 3556667666654
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.63 E-value=9.8e-16 Score=170.55 Aligned_cols=275 Identities=17% Similarity=0.165 Sum_probs=215.6
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 203 YSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 203 ~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
...+..+++.|+++.|+..+..++.+++.+++.+|.++.....+...++..+..|+++. +. .+.++...+.++|.
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll----~~-~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----GS-DDINVVTCAAGILS 291 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----TC-SCHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHH----cC-CCHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999754222222333389999998 33 45688999999999
Q ss_pred hhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCc--hhHHHHHhcCCcchhccccccCCc-c
Q psy4858 283 HLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGA--ENQEAMIKRKVPVWLFPLAFHNDD-N 357 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~--~~q~~mi~~~~~~wL~~La~s~dd-~ 357 (979)
+|-.++++++..+++.||++.|+.+++.. ++++++.|+.+|.||+.+... ..|..+++.|+++.|+.++.+.++ .
T Consensus 292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 371 (529)
T 1jdh_A 292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371 (529)
T ss_dssp HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence 99888899999999999999999999873 379999999999999765322 256788999999999999998875 8
Q ss_pred chhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-----hhhh---------------------
Q psy4858 358 IKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-----EFAK--------------------- 411 (979)
Q Consensus 358 vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-----~fAr--------------------- 411 (979)
++..||.+|+|++.+.+.+.. +...|.++.+..++...++. .++.
T Consensus 372 v~~~a~~~l~nl~~~~~~~~~---------~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~a 442 (529)
T 1jdh_A 372 LIKATVGLIRNLALCPANHAP---------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442 (529)
T ss_dssp HHHHHHHHHHHHTTSGGGHHH---------HHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhhHH---------HHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHH
Confidence 999999999999999988877 78888887776666553332 1111
Q ss_pred -hhhhc-cc----CCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhh
Q psy4858 412 -SNLAH-AH----GQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASK 485 (979)
Q Consensus 412 -~~l~~-~~----g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~ask 485 (979)
.++.. .. -.+.|.+++|+++|.+..++.+..|+..++ +.+ .+......+.+.|+++.|.++..++++...+
T Consensus 443 l~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~-~l~--~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~ 519 (529)
T 1jdh_A 443 LHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC-ELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVAT 519 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH-HHT--TSHHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred HHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHH-HHh--cCHHHHHHHHHcCChHHHHHHhcCCCHHHHH
Confidence 11110 00 124568999999999988899888877664 332 2344667789999999999998888888888
Q ss_pred hhhhhHhhc
Q psy4858 486 YAAQTLRLI 494 (979)
Q Consensus 486 lAaqaLe~~ 494 (979)
.+..+|..+
T Consensus 520 ~a~~aL~~l 528 (529)
T 1jdh_A 520 YAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888754
No 35
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.63 E-value=1.9e-15 Score=170.53 Aligned_cols=273 Identities=18% Similarity=0.207 Sum_probs=215.9
Q ss_pred HHHHHHhcCChHHHHHhhcCCC-hhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 205 LCNTLRNCGGMDLLISNCVEKD-LDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 205 lc~~ir~~Ggld~Li~~~~s~~-~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
..+.++..|+++.|++.+.+++ .++|..|+.+|.++.. ++++..|++.| +.+|+.+. +. .+.++...++.+
T Consensus 109 ~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL----~~-~~~~v~~~a~~a 183 (528)
T 4b8j_A 109 PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLL----GS-SSDDVREQAVWA 183 (528)
T ss_dssp CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHh----cC-CCHHHHHHHHHH
Confidence 3567889999999999999987 9999999999999975 59999999999 99999999 33 456899999999
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhh-ccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccch
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFEC-RKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIK 359 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~-r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr 359 (979)
|.||..++++.+..+++.|++++|+.++ ...++.+++.|+.+|+||+.+.... ...+..+++..|+.++.+.++.++
T Consensus 184 L~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~l~~L~~lL~~~~~~v~ 261 (528)
T 4b8j_A 184 LGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP--SFEQTRPALPALARLIHSNDEEVL 261 (528)
T ss_dssp HHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC--CHHHHTTHHHHHHHHTTCCCHHHH
T ss_pred HHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999888899999999999999999999 5669999999999999998876222 344568999999999999999999
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhhc-cc-----CCCchhhhhh
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLAH-AH-----GQNRNWLQKL 428 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~~-~~-----g~~~g~L~~L 428 (979)
..||.||++|+....-.... +...|.++.+..++...++..- +..++.. .. -...|.++.|
T Consensus 262 ~~a~~aL~~l~~~~~~~~~~--------~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDKIQA--------VIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCL 333 (528)
T ss_dssp HHHHHHHHHHTSSCHHHHHH--------HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH--------HHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHH
Confidence 99999999999886655442 7888999999888888776422 2233321 10 1256789999
Q ss_pred hhccccc-hHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhc
Q psy4858 429 VPVLSSK-REEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494 (979)
Q Consensus 429 vplL~s~-~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~ 494 (979)
+.+|.+. ....+.-|+..++ +.+. ........+...|+++.|.++..+++....+-+..+|..+
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~-nl~~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl 398 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTIS-NITA-GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNA 398 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHH-HHHT-SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHH-HHHC-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9999987 7777777776654 4432 1222345567779999999988766554555566666544
No 36
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.62 E-value=2.8e-16 Score=159.15 Aligned_cols=132 Identities=22% Similarity=0.338 Sum_probs=103.5
Q ss_pred CCCCCCCeeEecccCCccchHH-HHHHHHHh--cCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhccc
Q psy4858 653 NPDKNLDVFISYRRSNGSQLAS-LLKVHLEL--RQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMED 728 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg~~~As-~L~e~Le~--~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~ 728 (979)
...+.|||||||++.| ..++. +|...|+. .|+++|+|.+++.+|+ +.++|.++|++|+.+|+|+||+|+.
T Consensus 31 ~~~~~yDvFISys~~D-~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~----- 104 (178)
T 2j67_A 31 KRNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQ----- 104 (178)
T ss_dssp CCSCCEEEEEECCGGG-HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHH-----
T ss_pred CCCccceEEEECCCCC-HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccc-----
Confidence 4568999999999999 57886 49999998 7999999999999996 9999999999999999999999986
Q ss_pred CCCcCChhHHHHHHHHHhc-----CCeEEEEecCCCCCCCCCChH---HHHHHhh-hccccccccc--HHHHHHHHHHHH
Q psy4858 729 NESECKDWVHREIVAALQS-----GCNIIPILDNFAWPDPEQLPA---DMRAICK-FNGVRWIHDY--QDACVDKLERFM 797 (979)
Q Consensus 729 ~i~~~SdWV~rEL~~Al~~-----~k~IIPVl~~f~~pd~e~LPe---dLr~la~-~ngi~w~~~y--q~a~IdkIvr~I 797 (979)
|.||+.|+..|+++ +..||||+++- .|. .++|+ .|+.+.. ...+.|..+. +..+-++|-.+|
T Consensus 105 -----S~wc~~El~~a~~~~~~~~~~~vIpV~~~~-i~~-~~lp~~~~~Lr~~l~~~t~l~W~~~~~~~~~FW~~Lr~al 177 (178)
T 2j67_A 105 -----NEWCHYEFYFAHHNLFHENSDHIILILLEP-IPF-YCIPTRYHKLKALLEKKAYLEWPKDRRKCGLFWANLRAAI 177 (178)
T ss_dssp -----HTGGGTHHHHTTCC-------CEEEEESSC-CCG-GGSCTTCHHHHHHHHTTCSEECCSSGGGHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHhcCCCEEEEEEecC-CCh-HHCChhHHHHHHHHhcCCEEECCCCcchhHHHHHHHHHHh
Confidence 58999999999863 46899998862 122 25776 7776544 4467898642 344556655544
No 37
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.61 E-value=1.1e-16 Score=159.36 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCCCCCCeeEecccCCccchHHHHHHHHHhc--CCceEeecccCCCCc-chHHHHHHHH-hCCEEEEEECcccchhhccc
Q psy4858 653 NPDKNLDVFISYRRSNGSQLASLLKVHLELR--QFKVFIDVERLEAGK-FDNNLLQSIK-QARNFLLVLTPKALDRCMED 728 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg~~~As~L~e~Le~~--G~rVFiD~~~Ie~Gd-f~~~L~~aI~-~SrvfIvVLSp~~l~~~~~~ 728 (979)
...+.|||||||++.| ..++..|...|+.. ||++|+|.+++.+|+ +.++|.++|+ +|+.+|+|+||+|+.
T Consensus 12 ~~~~~yDvFISys~~D-~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~----- 85 (160)
T 2js7_A 12 HMPERFDAFICYCPSD-IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQ----- 85 (160)
T ss_dssp CCTTCEEEEEECCGGG-HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHH-----
T ss_pred CCCcceEEEEEccccc-HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhc-----
Confidence 3468999999999999 77999999999985 699999999999996 8999999999 799999999999975
Q ss_pred CCCcCChhHHHHHHHHHhc-----CCeEEEEecCCCCCCCCCChHHHHHHhhhcccccccc-cHHHHHHHHHHHHhhccc
Q psy4858 729 NESECKDWVHREIVAALQS-----GCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHD-YQDACVDKLERFMRGELN 802 (979)
Q Consensus 729 ~i~~~SdWV~rEL~~Al~~-----~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~-yq~a~IdkIvr~I~g~l~ 802 (979)
|.||+.|+..|+++ +..||||+++- .+ .++|..|+.+ ..+.|... .+..+-++|...|...+.
T Consensus 86 -----S~wc~~El~~a~~~~~~~~~~~vIpV~~~~-~~--~~lp~ll~~~---~~~~~~~~~~~~~FW~kL~~al~~~~~ 154 (160)
T 2js7_A 86 -----SKECDFQTKFALSLSPGAHQKRLIPIKYKA-MK--KEFPSILRFI---TVCDYTNPCTKSWFWTRLAKALSLPLE 154 (160)
T ss_dssp -----SHHHHHHHHHHHHHCTTHHHHTEEEEESSC-CC--CCCCTTTSCS---SCEETTCTTTCSSHHHHHHHHHHSCTT
T ss_pred -----CHHHHHHHHHHHHHHHccCCCEEEEEEEcc-cc--hhhHHHHhce---EEEECCCCCCChHHHHHHHHHcCCccc
Confidence 68999999999985 35799998862 11 2577766543 45667542 345666888888775543
No 38
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.60 E-value=7.8e-15 Score=159.64 Aligned_cols=277 Identities=19% Similarity=0.194 Sum_probs=212.7
Q ss_pred HHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc--chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~--~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
..+..+++.|+++.|++.+.+++.++|..|+.+|.++... ++|+.+++.| +..|+++.. ...+.++.+.++.+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~----~~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS----KQNRLTMTRNAVWA 173 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTT----SCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc----CCCCHHHHHHHHHH
Confidence 3456678899999999999999999999999999999753 7999999988 999999983 22456899999999
Q ss_pred hhhhhhcC-hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccch
Q psy4858 281 LEHLFKHS-EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIK 359 (979)
Q Consensus 281 L~~lfkHS-e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr 359 (979)
|.+|..+. ......++ .|+++.|+.+++..|+.+++.|+.+|.||+-+. +.+...+++.|++..|+.++.+.++.++
T Consensus 174 L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGP-NDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS-HHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC-cHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 99997776 44445555 899999999999999999999999999998654 3556778899999999999999889999
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhh-----hhhhhhhc-ccC-----CCchhhhhh
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAH-AHG-----QNRNWLQKL 428 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~-----fAr~~l~~-~~g-----~~~g~L~~L 428 (979)
..|+.+|++|+...+..... +...|.++.+..++...+|.. .+..++.. ... .+.+.++.|
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~--------~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQV--------ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHH--------HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhhCChHHHHH--------HHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 99999999999885544431 777888898888888766642 23333321 100 135789999
Q ss_pred hhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhcc
Q psy4858 429 VPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIG 495 (979)
Q Consensus 429 vplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~g 495 (979)
+.+|.....+.|..|++.++ +..........+.+.+.|+++.|.++..+++.-....+..+|..+-
T Consensus 324 ~~~l~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 324 ISILQTAEFRTRKEAAWAIT-NATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHHHSCHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999877788777777764 3432112223445667899999999987665544445666665443
No 39
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.60 E-value=7.5e-15 Score=166.24 Aligned_cols=271 Identities=18% Similarity=0.148 Sum_probs=211.9
Q ss_pred HHHHhcCChHHHHHhhcCC-ChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 207 NTLRNCGGMDLLISNCVEK-DLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s~-~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
+.++..|++..|++.+.++ +.++|..|+.+|.++.. ++++..+++.| +..|+++.. . .+.++...++.+|.
T Consensus 124 ~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~----~-~~~~vr~~A~~aL~ 198 (530)
T 1wa5_B 124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY----T-GSVEVKEQAIWALG 198 (530)
T ss_dssp HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH----H-CCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc----C-CCHHHHHHHHHHHH
Confidence 4567899999999999998 89999999999999975 48999999988 999999994 2 45688999999999
Q ss_pred hhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhH
Q psy4858 283 HLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYA 362 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A 362 (979)
+|..++++.+..++..|+++.|+.+++..++++++.|+.+|+||+.+..+.. ...+..+++..|+.++.+.++.++..|
T Consensus 199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL~~~d~~v~~~a 277 (530)
T 1wa5_B 199 NVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLIYSMDTETLVDA 277 (530)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred HHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 9988889999999999999999999999999999999999999987763333 345568899999999999999999999
Q ss_pred HHHHHHHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhhccc------CCCchhhhhhhh
Q psy4858 363 CLAIAVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLAHAH------GQNRNWLQKLVP 430 (979)
Q Consensus 363 ~lAla~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~~~~------g~~~g~L~~Lvp 430 (979)
|.+|.+|+.. .+.... +...|.++.+..++...++... +..++.... -...|+++.|+.
T Consensus 278 ~~~L~~L~~~~~~~~~~---------~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 348 (530)
T 1wa5_B 278 CWAISYLSDGPQEAIQA---------VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348 (530)
T ss_dssp HHHHHHHHSSCHHHHHH---------HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHH---------HHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence 9999999976 444444 7788999988888887666422 222222110 023579999999
Q ss_pred ccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhc
Q psy4858 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494 (979)
Q Consensus 431 lL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~ 494 (979)
+|.+...+.+.-|+..+. +.+. ........+.+.|+++.|.++...++.-....+..+|..+
T Consensus 349 lL~~~~~~vr~~A~~aL~-~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 410 (530)
T 1wa5_B 349 LLSSPKENIKKEACWTIS-NITA-GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA 410 (530)
T ss_dssp HTTCSCHHHHHHHHHHHH-HHTT-SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-HHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999987777777766664 3431 1222334566789999999887755554445566666544
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.60 E-value=4.8e-15 Score=160.28 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=148.1
Q ss_pred HHHHHhcCChHHHHH-hhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHh
Q psy4858 206 CNTLRNCGGMDLLIS-NCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGIL 281 (979)
Q Consensus 206 c~~ir~~Ggld~Li~-~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL 281 (979)
-+.|...||+.+|+. ++.+++.++|..||.+|.+++. +++|+.|++.| +.+|+++... ..+..+.+.++.+|
T Consensus 74 a~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~----~~~~~v~~~A~~AL 149 (296)
T 1xqr_A 74 AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR----DACDTVRVKALFAI 149 (296)
T ss_dssp HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----CSCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc----CCCHHHHHHHHHHH
Confidence 345678999999999 9999999999999999999985 47899999998 9999999943 23458899999999
Q ss_pred hhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhh
Q psy4858 282 EHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYY 361 (979)
Q Consensus 282 ~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~ 361 (979)
.||-.|.....+.+++.||++.|+.+|+++|+.+++.|+.||+||+-. .++.+..+++.|++..|+.|+.+.+..++.+
T Consensus 150 snl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~ 228 (296)
T 1xqr_A 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEH 228 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHH
Confidence 999888888888999999999999999999999999999999999865 5677888999999999999999999999999
Q ss_pred HHHHHHHHhcch
Q psy4858 362 ACLAIAVLVANT 373 (979)
Q Consensus 362 A~lAla~Lasn~ 373 (979)
|+.||.+|+.+.
T Consensus 229 al~aL~~l~~~~ 240 (296)
T 1xqr_A 229 VLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 999999999983
No 41
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.57 E-value=7.4e-15 Score=171.18 Aligned_cols=278 Identities=18% Similarity=0.161 Sum_probs=218.9
Q ss_pred HHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhh
Q psy4858 204 SLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEH 283 (979)
Q Consensus 204 ~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~ 283 (979)
..+..+++.|+++.|++.+..++.+++.+++.+|.++.....+....+..+..|+++. +. .+.++...+.++|.+
T Consensus 215 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL----~~-~d~~v~~~a~~aL~~ 289 (644)
T 2z6h_A 215 SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----GS-DDINVVTCAAGILSN 289 (644)
T ss_dssp THHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHT----TC-SCHHHHHHHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHH----cC-CCHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999744222222233389999998 33 456889999999999
Q ss_pred hhhcChhhHHHHhhcCchHHHHhhhccC-C-hhHHHHHHHhhhhhcccCCc--hhHHHHHhcCCcchhccccccCCc-cc
Q psy4858 284 LFKHSEGTCSDVIGLGGLDTVLFECRKN-D-IETLRHCAGALANLSLYGGA--ENQEAMIKRKVPVWLFPLAFHNDD-NI 358 (979)
Q Consensus 284 lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-d-~~~lr~ca~ALaNlAl~~~~--~~q~~mi~~~~~~wL~~La~s~dd-~v 358 (979)
|-.++++++..+++.||++.|+.++... + ++++..|+.||.||+-..+. ..|..+++.|++..|+.++.+.++ .+
T Consensus 290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v 369 (644)
T 2z6h_A 290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence 9888899999999999999999999984 4 79999999999999765432 346678899999999999998864 89
Q ss_pred hhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCCh---------------------hhh------hh
Q psy4858 359 KYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSP---------------------SEF------AK 411 (979)
Q Consensus 359 r~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P---------------------~~f------Ar 411 (979)
+..||.+|+||+.+.+.+.. |...|.++.+..++...++ .++ |.
T Consensus 370 ~~~a~~~L~nLa~~~~~~~~---------i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL 440 (644)
T 2z6h_A 370 IKATVGLIRNLALCPANHAP---------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 440 (644)
T ss_dssp HHHHHHHHHHHTTSGGGHHH---------HHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHH---------HHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHH
Confidence 99999999999999998877 8888888877666665332 111 11
Q ss_pred hhhh-c----ccCCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhh
Q psy4858 412 SNLA-H----AHGQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKY 486 (979)
Q Consensus 412 ~~l~-~----~~g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~askl 486 (979)
.++. + ..-...|.+++|+.+|.+..++.+..|+..++. .+ ........|.+.|+++.|.++..+++......
T Consensus 441 ~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~--~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~ 517 (644)
T 2z6h_A 441 HILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE-LA--QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517 (644)
T ss_dssp HHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH-HH--TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred HHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHH-HH--cCHHHHHHHHHcCChhHHHHHHcCCCHHHHHH
Confidence 1111 0 011255699999999999888888888877653 32 23345677889999999999998888888888
Q ss_pred hhhhHhhccCcc
Q psy4858 487 AAQTLRLIGETV 498 (979)
Q Consensus 487 AaqaLe~~gEev 498 (979)
+..+|..+.+..
T Consensus 518 A~~aL~~l~~~~ 529 (644)
T 2z6h_A 518 AAAVLFRMSEDK 529 (644)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHhccC
Confidence 999998876554
No 42
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=168.68 Aligned_cols=269 Identities=15% Similarity=0.092 Sum_probs=207.6
Q ss_pred HHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhh-c-hhHHHhhhhhccccccccchhhhhhhHhhh
Q psy4858 207 NTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVEN-G-LDKVVRVACVCTKNINSVEHSRVGTGILEH 283 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~-G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~ 283 (979)
+.....|+++.|+.++.+++..+|..|+.+|.++.. .+||..++.. | +..|+++.. ...+.+.++.++++|.+
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~----~~~~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ----NTNDVETARCTAGTLHN 83 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHH----SCCCHHHHHHHHHHHHH
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHh----cCCCHHHHHHHHHHHHH
Confidence 455788999999999999999999999999999975 4788888865 6 999999984 32456899999999999
Q ss_pred hhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHH
Q psy4858 284 LFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363 (979)
Q Consensus 284 lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~ 363 (979)
| ...++++..+++.|+++.|+.++++.|+.++++|+.+|.||+... ..++..+++.|++..|+.+..+.+..++..|+
T Consensus 84 L-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 84 L-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp H-TTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred H-hcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 8 555679999999999999999999999999999999999998775 35567788999999999999998888888888
Q ss_pred HHHHHHhc-chHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh------hhhhhhc-c----cCCCchhhhhhhhc
Q psy4858 364 LAIAVLVA-NTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF------AKSNLAH-A----HGQNRNWLQKLVPV 431 (979)
Q Consensus 364 lAla~Las-n~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f------Ar~~l~~-~----~g~~~g~L~~Lvpl 431 (979)
.+|.+|+. +.+...+ |...|.++.+..+++..++... +..++.. . .-...|.++.|+++
T Consensus 162 ~~L~~La~~~~~~~~~---------i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 162 DCLQILAYGNQESKLI---------ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp HHHHHHHTTCHHHHHH---------HHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred HHHHHHHhcCcHHHHH---------HHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 89999996 7888888 8889999888888887765322 1112211 1 11245689999999
Q ss_pred cccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhcc
Q psy4858 432 LSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIG 495 (979)
Q Consensus 432 L~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~g 495 (979)
|.....+.+..++..+. +... .... .....++++.|.++..+.+......+..+|..+.
T Consensus 233 l~~~~~~~~~~a~~~L~-nL~~--~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLR-NLSD--AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTCSCHHHHHHHHHHHH-HHGG--GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH-HHhh--cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99977777776666653 3431 1111 1223378888888887776655666777776543
No 43
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.56 E-value=9.8e-15 Score=175.37 Aligned_cols=278 Identities=18% Similarity=0.178 Sum_probs=218.7
Q ss_pred HHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhh
Q psy4858 205 LCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHL 284 (979)
Q Consensus 205 lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~l 284 (979)
.+..+++.|++..|+..+..++.+++.+|+.+|.++.....+.......+..|+.+. +. ++.++.+.+.++|.+|
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL----~~-~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLL----GS-DDINVVTCAAGILSNL 426 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHT----TC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHH----cC-CCHHHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999744322222233388899888 33 5568899999999999
Q ss_pred hhcChhhHHHHhhcCchHHHHhhhcc-CCh-hHHHHHHHhhhhhcccCCch--hHHHHHhcCCcchhccccccCCc-cch
Q psy4858 285 FKHSEGTCSDVIGLGGLDTVLFECRK-NDI-ETLRHCAGALANLSLYGGAE--NQEAMIKRKVPVWLFPLAFHNDD-NIK 359 (979)
Q Consensus 285 fkHSe~t~~~lV~~Ggl~~Ll~l~r~-~d~-~~lr~ca~ALaNlAl~~~~~--~q~~mi~~~~~~wL~~La~s~dd-~vr 359 (979)
-.++++++..+++.||++.|+.++.. ++. ++++.|+.||.||+...... .|..+++.+++..|+.+..+.++ .++
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~ 506 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 506 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHH
Confidence 88889999999999999999999987 443 89999999999997643221 36678899999999999998887 899
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh---------------------hh------hhh
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS---------------------EF------AKS 412 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~---------------------~f------Ar~ 412 (979)
..||.+|+||+.+.+.+.. |.+.|.++.+..++...++. ++ |..
T Consensus 507 ~~A~~aL~nLa~~~~~~~~---------i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~ 577 (780)
T 2z6g_A 507 KATVGLIRNLALCPANHAP---------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALH 577 (780)
T ss_dssp HHHHHHHHHHHSSHHHHHH---------HHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHH---------HHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHH
Confidence 9999999999999888877 77888877666666543321 11 111
Q ss_pred hhhc-----ccCCCchhhhhhhhccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhh
Q psy4858 413 NLAH-----AHGQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYA 487 (979)
Q Consensus 413 ~l~~-----~~g~~~g~L~~LvplL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklA 487 (979)
++.. ..-...|++++|+.+|.+..++.+..|+..++ +.. ........|.+.|+++.|.++..+++....+.|
T Consensus 578 ~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~-~L~--~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 578 ILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC-ELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp HHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHH-HHH--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH-HHh--cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 1110 00124569999999999988888888877664 232 234466788999999999999888888888889
Q ss_pred hhhHhhccCccc
Q psy4858 488 AQTLRLIGETVP 499 (979)
Q Consensus 488 aqaLe~~gEevp 499 (979)
..||..+.+..|
T Consensus 655 ~~aL~~l~~~~~ 666 (780)
T 2z6g_A 655 AAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCh
Confidence 999999887765
No 44
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.55 E-value=3.7e-14 Score=154.32 Aligned_cols=268 Identities=19% Similarity=0.167 Sum_probs=204.1
Q ss_pred HHhc-CChHHHHHhhcCC-ChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhh
Q psy4858 209 LRNC-GGMDLLISNCVEK-DLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEH 283 (979)
Q Consensus 209 ir~~-Ggld~Li~~~~s~-~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~ 283 (979)
+... |+++.|++.+.++ +.++|..|+++|.++.. .+++..+++.| +..++.+. +. .+.++...+..+|.+
T Consensus 59 ~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL----~~-~~~~vr~~a~~~L~~ 133 (450)
T 2jdq_A 59 VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL----SS-EFEDVQEQAVWALGN 133 (450)
T ss_dssp HHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT----TC-SCHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH----cC-CCHHHHHHHHHHHHH
Confidence 4455 9999999999999 89999999999999975 58888899888 89999998 33 456889999999999
Q ss_pred hhhcChhhHHHHhhcCchHHHHhhhcc-CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhH
Q psy4858 284 LFKHSEGTCSDVIGLGGLDTVLFECRK-NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYA 362 (979)
Q Consensus 284 lfkHSe~t~~~lV~~Ggl~~Ll~l~r~-~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A 362 (979)
+-.++++.+..+++.|+++.|+.+++. .++.+.+.|+.+|.||+.+.++.....++ .+++..|+.++.+.++.++..|
T Consensus 134 l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a 212 (450)
T 2jdq_A 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADA 212 (450)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHH
T ss_pred HccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHH
Confidence 988888899999999999999999996 68999999999999998776444334444 7888999999999889999999
Q ss_pred HHHHHHHhcch-HHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhhcc-c-----CCCchhhhhhhh
Q psy4858 363 CLAIAVLVANT-EIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLAHA-H-----GQNRNWLQKLVP 430 (979)
Q Consensus 363 ~lAla~Lasn~-ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~~~-~-----g~~~g~L~~Lvp 430 (979)
|.+|++|+.+. +.... +...|.++.+..++...+|... +..++... . -.+.|.++.|++
T Consensus 213 ~~~L~~l~~~~~~~~~~---------~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 283 (450)
T 2jdq_A 213 CWALSYLSDGPNDKIQA---------VIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLH 283 (450)
T ss_dssp HHHHHHHTSSSHHHHHH---------HHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHH---------HHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHH
Confidence 99999999874 44444 7788888888888887666422 22222211 0 124579999999
Q ss_pred ccccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 431 lL~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
+|.+.+.+.+.-|+..+. +.+. ......+.+.+.|+++.|.++...++......+..+|..
T Consensus 284 ll~~~~~~vr~~a~~~L~-~l~~-~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 284 LLSSPKESIKKEACWTIS-NITA-GNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp HTTCSSHHHHHHHHHHHH-HHTT-SCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-HHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999987777777666653 3431 122233456667888888887765544344444445543
No 45
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.54 E-value=7.4e-15 Score=154.50 Aligned_cols=162 Identities=19% Similarity=0.156 Sum_probs=138.8
Q ss_pred HHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc--cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhh
Q psy4858 203 YSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTG 279 (979)
Q Consensus 203 ~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~--~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~g 279 (979)
...-..|++.||+.+|++++.+++.++|..|+..|.++.. ++||..|++.| +++||+|... ..+.+.++.++|
T Consensus 42 ~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~----~~~~~~~e~a~~ 117 (233)
T 3tt9_A 42 SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ----TRDLETKKQITG 117 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH----CCCHHHHHHHHH
T ss_pred cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHcc----CCCHHHHHHHHH
Confidence 3456689999999999999999999999999999999974 59999999999 9999999943 234589999999
Q ss_pred HhhhhhhcChhhHHHHhhcCchHHHHhhhc----------------cCChhHHHHHHHhhhhhcccCCchhHHHHHh-cC
Q psy4858 280 ILEHLFKHSEGTCSDVIGLGGLDTVLFECR----------------KNDIETLRHCAGALANLSLYGGAENQEAMIK-RK 342 (979)
Q Consensus 280 iL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r----------------~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~-~~ 342 (979)
+|-|| ...++++..|++ +|+++|+.++- ..|+++++.|+++|.||+..+ .+++..|.+ .|
T Consensus 118 aL~nL-S~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~-~~~R~~~r~~~G 194 (233)
T 3tt9_A 118 LLWNL-SSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG-ADGRKAMRRCDG 194 (233)
T ss_dssp HHHHH-HTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSC-HHHHHHHHTSTT
T ss_pred HHHHH-HcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCC
Confidence 99999 888999999987 58999998652 237899999999999998743 467788876 57
Q ss_pred CcchhccccccC------CccchhhHHHHHHHHhc
Q psy4858 343 VPVWLFPLAFHN------DDNIKYYACLAIAVLVA 371 (979)
Q Consensus 343 ~~~wL~~La~s~------dd~vr~~A~lAla~Las 371 (979)
+++.|+.+..+. |++.+..|..||+||+.
T Consensus 195 li~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 195 LIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 899999997753 66888999999999975
No 46
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=99.53 E-value=9.2e-15 Score=133.27 Aligned_cols=73 Identities=34% Similarity=0.600 Sum_probs=68.4
Q ss_pred CCCCCCCCHHHHHHHHHHcCc--hHHHHHHHhcCCChhHHhcCChhhhc-cccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 503 SQQVPLWSTEDVREWVRQIGF--AEYANNFVESRVDGDLLLQLNEEHLR-DDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~IGL--~eY~~~F~en~IDG~~LL~LTeeDL~-~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
.++|..|++++|+.||+.+|| ++|++.|.+|.|||+.|+.||++||+ .+|||.+.|||++|+++|+.|+..+.
T Consensus 14 ~~~v~~Wt~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~~~ 89 (91)
T 1v85_A 14 HKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSGPS 89 (91)
T ss_dssp HSCGGGCCHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCcccCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhccC
Confidence 358899999999999999999 99999999999999999999999998 35999999999999999999997654
No 47
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.52 E-value=9.3e-15 Score=145.30 Aligned_cols=117 Identities=21% Similarity=0.346 Sum_probs=89.3
Q ss_pred CCCCeeEecccCCc----------cchHHH-HHHHHH-hcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccc
Q psy4858 656 KNLDVFISYRRSNG----------SQLASL-LKVHLE-LRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKAL 722 (979)
Q Consensus 656 ~~yDVFISYRR~Dg----------~~~As~-L~e~Le-~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l 722 (979)
+.|||||||++.|. ..|+.+ |...|+ ..||++|+|.+++.+|+ +.++|.++|++|+..|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999994 356666 556799 68999999999999995 999999999999999999999996
Q ss_pred -hhhcccCCCcCChhHHHHHHHHHhc-----CCeEEEEecCCCCCCC--CCChHHHHHHhhhc-cccccc
Q psy4858 723 -DRCMEDNESECKDWVHREIVAALQS-----GCNIIPILDNFAWPDP--EQLPADMRAICKFN-GVRWIH 783 (979)
Q Consensus 723 -~~~~~~~i~~~SdWV~rEL~~Al~~-----~k~IIPVl~~f~~pd~--e~LPedLr~la~~n-gi~w~~ 783 (979)
. |.||+.|+..|+++ +..||||++.- .++. ....+.|+.+...+ .++|..
T Consensus 81 ~~----------S~wc~~El~~a~~~~~~~~~~~vI~I~~~~-~~~~~~~~~~~~L~~~l~~~t~l~W~~ 139 (159)
T 1t3g_A 81 VR----------RGWSIFELETRLRNMLVTGEIKVILIECSE-LRGIMNYQEVEALKHTIKLLTVIKWHG 139 (159)
T ss_dssp HT----------TTTHHHHHSHHHHHHHHTTSSEEEEEECSC-CCSHHHHHHHHHHHHTCSSEEEEECCS
T ss_pred hc----------ChHHHHHHHHHHHHHHhcCCCEEEEEEecc-ccccccccchHHHHHHHhhCCeEeCCC
Confidence 4 68999999999874 57899998751 1110 00013466554433 577853
No 48
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=99.52 E-value=6e-15 Score=128.91 Aligned_cols=68 Identities=25% Similarity=0.593 Sum_probs=65.3
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
+|..||+++|+.||+.+||++|++.|.+|+|||..|+.||++||+ +|||++.|||++|+++|+.|+..
T Consensus 3 ~v~~Ws~~~V~~WL~~~gl~~y~~~F~~~~i~g~~Ll~l~~~dL~-~lGI~~~g~r~kil~~i~~L~~~ 70 (74)
T 2gle_A 3 MVHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLK-ALGMTSSQDRALVKKKLKEMKMS 70 (74)
T ss_dssp CGGGCCSGGGHHHHHHTTTHHHHHHHTTTTCCHHHHHTCCHHHHH-TTTCCCHHHHHHHHHHHHSHHHH
T ss_pred CcccCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999997 79999999999999999999864
No 49
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.51 E-value=6e-14 Score=168.54 Aligned_cols=274 Identities=16% Similarity=0.153 Sum_probs=216.0
Q ss_pred HHHHHHhc-CChHHHHHhhcCC-ChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhH
Q psy4858 205 LCNTLRNC-GGMDLLISNCVEK-DLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGI 280 (979)
Q Consensus 205 lc~~ir~~-Ggld~Li~~~~s~-~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~gi 280 (979)
....|... |++..|++.+.++ +.++|.+|+++|.++.. .+|+..|++.| +..|+++.. . .+.++++.+..+
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----~-~~~~v~~~A~~a 257 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----S-PVDSVLFHAITT 257 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----C-SCHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----C-CCHHHHHHHHHH
Confidence 34455644 8999999999865 89999999999999864 58999999999 999999993 3 345889999999
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCc-cch
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD-NIK 359 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd-~vr 359 (979)
|.||-.++++.+..+++.|+++.|+.++++.+..+++.|+.+|.|++. +..+++..+++.+++..|+.++.+.++ .++
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~-~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 336 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-GNQESKLIILASGGPQALVNIMRTYTYEKLL 336 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT-TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CChHHHHHHHHcCCHHHHHHHHhcCCHHHHH
Confidence 999988888888888899999999999999999999999999999986 456788889999999999999998776 567
Q ss_pred hhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhh-----hhhhhh-c--ccCCCchhhhhhhhc
Q psy4858 360 YYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEF-----AKSNLA-H--AHGQNRNWLQKLVPV 431 (979)
Q Consensus 360 ~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~f-----Ar~~l~-~--~~g~~~g~L~~Lvpl 431 (979)
.+|+.+|.+|+.+.+.... |++.|.++.+..++...++... +..++. . ......+.++.|+.+
T Consensus 337 ~~a~~aL~~Ls~~~~~~~~---------i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~l 407 (780)
T 2z6g_A 337 WTTSRVLKVLSVCSSNKPA---------IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 407 (780)
T ss_dssp HHHHHHHHHHHTSTTHHHH---------HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHH---------HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHH
Confidence 8899999999999998888 8899999988888887766422 122221 1 112346799999999
Q ss_pred cccchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcC-Cc-cchhhhhhhhHhhcc
Q psy4858 432 LSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASC-PN-AVASKYAAQTLRLIG 495 (979)
Q Consensus 432 L~s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasS-pn-d~asklAaqaLe~~g 495 (979)
|.+...+.+..|+..++ +.+ .....+...+.+.|+++.|.++... ++ +....-+..+|..+.
T Consensus 408 L~~~d~~vr~~A~~aL~-~L~-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 408 LGSDDINVVTCAAGILS-NLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp TTCSCHHHHHHHHHHHH-HHT-SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHH-HHH-hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 99988888777766664 333 1223456778888999999988763 22 233344666666553
No 50
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=99.51 E-value=9.9e-15 Score=128.72 Aligned_cols=71 Identities=25% Similarity=0.576 Sum_probs=66.8
Q ss_pred CCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 504 QQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
++|..||+++|+.||+.+ ||++|++.|.+|+|||..|+.||++||+ +|||++.|||++|+++|+.|+...+
T Consensus 1 k~v~~Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~-~lGI~~~g~r~~il~~I~~Lr~~~~ 73 (78)
T 3bs7_A 1 KAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNRDREAIWREIVKQRLKTD 73 (78)
T ss_dssp CCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHh-HcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 368899999999999996 9999999999999999999999999998 7999999999999999999997653
No 51
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=99.50 E-value=7.7e-15 Score=135.78 Aligned_cols=75 Identities=20% Similarity=0.405 Sum_probs=68.5
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhcc-ccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRD-DIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 498 vp~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~-dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.|.....+|..|+++||+.||+++||++|++.| +| |||+.|+.||++||++ +|||.+.+||++|+++|+.|+...
T Consensus 9 ~p~~~~~~v~~Ws~edV~~WL~~~Gl~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~ 84 (97)
T 2d8c_A 9 LSARTMKEVVYWSPKKVADWLLENAMPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEH 84 (97)
T ss_dssp CCCSCCSCCSSCCTTHHHHHHHHTTCTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHS
T ss_pred CCCCCCCchhhCCHHHHHHHHHHcCCHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344556789999999999999999999999999 78 9999999999999985 499999999999999999999765
No 52
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=99.50 E-value=1.8e-14 Score=128.45 Aligned_cols=70 Identities=27% Similarity=0.599 Sum_probs=65.6
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
++|..|++++|++||+.+||++|++.|.+++|||..|+.||++||+ +|||.++|||++|+.+|+.|+...
T Consensus 5 ~~v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~-~lGI~~~ghr~kIl~aI~~L~~~~ 74 (81)
T 3bq7_A 5 RPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLK-DLGVTKVGHMKRILCGIKELSRSS 74 (81)
T ss_dssp CCGGGCCHHHHHHHHHHTTCGGGHHHHHHTTCCHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHC--
T ss_pred CChhhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHCcCCHHHHh-HcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999998 699999999999999999998653
No 53
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-15 Score=136.22 Aligned_cols=74 Identities=26% Similarity=0.472 Sum_probs=69.5
Q ss_pred CcCCCCCCCCCHHHHHHHHHHcCchH--HHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 500 HKLSQQVPLWSTEDVREWVRQIGFAE--YANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 500 ~kl~~~V~~WS~EDVa~WL~~IGL~e--Y~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+.+..+|..|++++|++||+.+||++ |++.|.+|+|||..|+.||++||+ +|||.+.|||++|+++|+.|+...
T Consensus 21 ~~~~~~v~~Ws~~~V~~WL~~lgl~~~~y~~~F~~~~I~G~~Ll~Lt~~dLk-eLGI~~~G~R~kil~~I~~Lr~~~ 96 (103)
T 2e8o_A 21 LELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFE-NLGVSSLGERKKLLSYIQRLVQIH 96 (103)
T ss_dssp CCCCSCGGGCHHHHHHHHHHHHTCCCHHHHHHHHHTTCCTTTTTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHTTT
T ss_pred cccccChhhCCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHhH
Confidence 45567899999999999999999998 999999999999999999999998 799999999999999999998764
No 54
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=127.73 Aligned_cols=70 Identities=23% Similarity=0.527 Sum_probs=66.3
Q ss_pred CCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
++|..||+++|+.||+.+ ||++|++.|.+|+|||+.|+.||++||+ +|||.+.|||++|+++|+.|+...
T Consensus 2 ~~v~~Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~-~lGI~~~ghr~~il~~I~~L~~~~ 73 (80)
T 3bs5_B 2 EPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQELILEAVDLLCALN 73 (80)
T ss_dssp CCGGGCCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHhh
Confidence 378899999999999999 6999999999999999999999999997 799999999999999999998765
No 55
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=99.49 E-value=1.4e-14 Score=127.76 Aligned_cols=67 Identities=28% Similarity=0.567 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 506 V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
|..||+++|++||+.+||++|++.|.+++|||..|+.||++||+ +|||++.|||++|+++|+.|+..
T Consensus 2 v~~Ws~~~V~~WL~~lgl~~Y~~~F~~~~idg~~Ll~Lt~~dL~-~lGI~~~Ghr~kIl~aI~~l~~~ 68 (76)
T 2f3n_A 2 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHRENIERALRQLDGS 68 (76)
T ss_dssp GGGCCHHHHHHHHHHTTCGGGHHHHHHTTCCGGGGGGCCHHHHH-HTTCCCHHHHHHHHHHHHTC---
T ss_pred hhhCCHHHHHHHHHHCCCHHHHHHHHHcCCCHHHHccCCHHHHH-HcCCCChhHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999996 89999999999999999988764
No 56
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=99.46 E-value=3.5e-14 Score=133.11 Aligned_cols=72 Identities=25% Similarity=0.570 Sum_probs=68.2
Q ss_pred CCCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 503 SQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
..+|..||+++|+.||+.+ ||++|++.|.+|+|||+.|+.||++||+ +|||++.|||++|+++|+.|+...+
T Consensus 20 ~~~v~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk-~LGI~~~GhR~kIl~~I~~Lr~~~~ 93 (106)
T 3bs5_A 20 PKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNRDREAIWREIVKQRLKTD 93 (106)
T ss_dssp CCCGGGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3478999999999999999 9999999999999999999999999997 7999999999999999999997664
No 57
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.3e-14 Score=127.06 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=66.5
Q ss_pred CCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.+|..||+++|++||+.+ ||++|++.|.+|+|||+.|+.||++||+ +|||.+.|||++|+++|+.|+...
T Consensus 6 ~~v~~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~-~LGI~~~ghr~~il~~I~~L~~~~ 77 (83)
T 2ean_A 6 SGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQELILEAVDLLCALN 77 (83)
T ss_dssp CSGGGCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHH-HHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHH-HhCCCCHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999 5999999999999999999999999997 799999999999999999998764
No 58
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=99.44 E-value=8.1e-14 Score=126.95 Aligned_cols=71 Identities=27% Similarity=0.663 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHc-CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 504 QQVPLWSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~I-GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
++|..||++||++||+.+ ||++|++.|.++.|||..|+.||++||.++||| +.|+|++|+.+|+.|+...+
T Consensus 12 ~~v~~Ws~edV~~wL~~l~gl~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~~~~ 83 (89)
T 1kw4_A 12 PPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKEVRD 83 (89)
T ss_dssp CCGGGCCHHHHHHHHHTSTTCGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC----
T ss_pred CCchhCCHHHHHHHHHHCcChHHHHHHHHHhCccHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999 999999999999999999999999999668999 79999999999999987653
No 59
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=2.2e-12 Score=154.93 Aligned_cols=257 Identities=15% Similarity=0.107 Sum_probs=190.1
Q ss_pred HHHHHHHHHhcCC-hHHHHHhhcC-CChhHHhHHHHHHHHhhcc-c----------------------------------
Q psy4858 202 GYSLCNTLRNCGG-MDLLISNCVE-KDLDLQFSSARLLEQCLTT-E---------------------------------- 244 (979)
Q Consensus 202 ~~~lc~~ir~~Gg-ld~Li~~~~s-~~~~~q~~aa~~Le~~~~~-~---------------------------------- 244 (979)
....++.||+..| +..|+..+.+ ++..+.+-++.+|.||+.. +
T Consensus 364 ~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~ 443 (778)
T 3opb_A 364 KASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE 443 (778)
T ss_dssp SSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH
T ss_pred CHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH
Confidence 4467899999888 9999999995 7889999999999999751 1
Q ss_pred -----hhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChh---H
Q psy4858 245 -----NRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIE---T 315 (979)
Q Consensus 245 -----Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~---~ 315 (979)
||..|++.| +.+|+.+. ++ .+...+..+..+|.|| .-..++|..+++.||+++|+.++.++... .
T Consensus 444 ~v~~~~~~~l~eaGvIp~Lv~Ll----~S-~s~~~re~A~~aL~nL-S~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~ 517 (778)
T 3opb_A 444 DILLFNEKYILRTELISFLKREM----HN-LSPNCKQQVVRIIYNI-TRSKNFIPQLAQQGAVKIILEYLANKQDIGEPI 517 (778)
T ss_dssp HHHHHHHHHTTTTTHHHHHHHHG----GG-SCHHHHHHHHHHHHHH-HTSGGGHHHHHHTTHHHHHHHHTTCC---CCHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHH----cC-CCHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHH
Confidence 788999999 88898888 33 3346677777899999 88899999999999999999999998654 7
Q ss_pred HHHHHHhhhhhcccCCchhHHHHH--h-cCCcchhcccccc-CC-c------------cchhhHHHHHHHHhcch-----
Q psy4858 316 LRHCAGALANLSLYGGAENQEAMI--K-RKVPVWLFPLAFH-ND-D------------NIKYYACLAIAVLVANT----- 373 (979)
Q Consensus 316 lr~ca~ALaNlAl~~~~~~q~~mi--~-~~~~~wL~~La~s-~d-d------------~vr~~A~lAla~Lasn~----- 373 (979)
++.||.|||||++...+. ..+- . .+++..|+.|... ++ + ..++.|++||.|||+.+
T Consensus 518 k~~AA~ALArLlis~np~--~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E 595 (778)
T 3opb_A 518 RILGCRALTRMLIFTNPG--LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGE 595 (778)
T ss_dssp HHHHHHHHHHHHHTSCHH--HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHhcCCHH--HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccch
Confidence 899999999999876444 2221 1 3888999999872 11 1 23999999999999985
Q ss_pred HHHHHHHhhhhHHHHHh-hCCccchHhhhhcCChhh-----hhhhhhh-cccCC-----------Cchhhhhhhhccccc
Q psy4858 374 EIEAAVLKSVQEAAVLK-SGTLDLVEPFVMSHSPSE-----FAKSNLA-HAHGQ-----------NRNWLQKLVPVLSSK 435 (979)
Q Consensus 374 ei~~~~~~~~~~~~V~~-sG~l~lv~~~~~~~~P~~-----fAr~~l~-~~~g~-----------~~g~L~~LvplL~s~ 435 (979)
+++.. |++ .|.++.++.++.+.++.. -+.+|+. +..++ +.+-++.||.||.++
T Consensus 596 ~~r~~---------Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~ 666 (778)
T 3opb_A 596 EVCKH---------IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS 666 (778)
T ss_dssp HHHHH---------HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS
T ss_pred HHHHH---------HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC
Confidence 56777 677 488888888888766641 1234443 22121 112488999999999
Q ss_pred hHHHHHHHHHHhhHHhhhhhhcCCchhhhhh-Cccchhhhhhc
Q psy4858 436 REEARNLAAFHFCMEAGIKKQQGKTDIFKEI-GAIEPLKKVAS 477 (979)
Q Consensus 436 ~eE~q~lAafhl~~ea~iKk~q~n~~~F~ei-GaIe~LkrLas 477 (979)
..+.|..|+.-+++ +.. ....+.+.+.+. ++|+.|.++..
T Consensus 667 D~~~r~AAagALAn-Lts-~~~~ia~~ll~~~~gi~~Ll~lL~ 707 (778)
T 3opb_A 667 DVESQRAVAAIFAN-IAT-TIPLIAKELLTKKELIENAIQVFA 707 (778)
T ss_dssp CHHHHHHHHHHHHH-HHH-HCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-hcC-CChHHHHHHHHccccHHHHHHHHh
Confidence 99998888877753 321 123344455444 78888877754
No 60
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=99.35 E-value=5.7e-13 Score=121.50 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=65.0
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 498 VPHKLSQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 498 vp~kl~~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.|..+..+|..||++||++||+.+ ||++|++.|.++.|||..||.||++||.+.|||+ .|++.||...|+.|+...
T Consensus 6 ~~~~~~~~v~~WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgik-lGpalKi~~~I~~lk~~~ 83 (89)
T 1pk1_B 6 ANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGLK-LGPALKICNLVNKVNGRD 83 (89)
T ss_dssp -----CCCGGGCCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCCC-HHHHHHHHHHHHHHC---
T ss_pred CCCCCCCCchhCCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCCC-ccHHHHHHHHHHHHHccc
Confidence 455667789999999999999998 8999999999999999999999999998789995 999999999999998653
No 61
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=99.34 E-value=1.7e-13 Score=127.76 Aligned_cols=83 Identities=25% Similarity=0.476 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHh---cCChhhhccccCCCChHHHHHHHHHHHHHHhhc--ccCCC
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA--DYSSK 579 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL---~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~--~yss~ 579 (979)
.+..|+..+|.+||+.+||++|.+.|.+|++||..++ .||++||+ ++||++.|||+||+++|+.|+... +++..
T Consensus 16 ~~~~w~~~~V~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~-~lGI~~~GhRkkIl~ai~~L~~~~~~~~~~~ 94 (103)
T 2ke7_A 16 NGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPKMRPIGHDGY 94 (103)
T ss_dssp -------CCTTHHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHH-HHTCCCHHHHHHHHHHHHHSCC---------
T ss_pred cccCCCHhHHHHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHh-HCCCCCHHHHHHHHHHHHHHHhcccccCCCC
Confidence 4579999999999999999999999999999999876 99999998 799999999999999999998643 46778
Q ss_pred CccChHHHh
Q psy4858 580 DVTNLNNFL 588 (979)
Q Consensus 580 d~~~l~ewL 588 (979)
.|.++.+||
T Consensus 95 ~P~~~~~WL 103 (103)
T 2ke7_A 95 HPTSVAEWL 103 (103)
T ss_dssp ---------
T ss_pred CCcCHHhhC
Confidence 888999997
No 62
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.33 E-value=6.6e-13 Score=121.55 Aligned_cols=69 Identities=20% Similarity=0.450 Sum_probs=64.6
Q ss_pred CCCCCCCCHHHHHHHHHHc--CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 503 SQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~I--GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+|..||+++|+.||+.+ ||.+| .|.+|+|+|..|+.||++||+ +|||++.|||++|+++|+.|+...
T Consensus 8 ~~~v~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~-~LGI~~~Ghr~~Il~~I~~L~~~~ 78 (91)
T 1wwv_A 8 MEPVETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLE-ALAVRSLGHQELILGGVEQLQALS 78 (91)
T ss_dssp CCCTTTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGG-GGTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHH-HcCCCcHhHHHHHHHHHHHHHHHh
Confidence 3589999999999999966 89999 799999999999999999998 799999999999999999999765
No 63
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=99.32 E-value=3.1e-12 Score=136.89 Aligned_cols=127 Identities=20% Similarity=0.291 Sum_probs=110.9
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhccc-------C
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADY-------S 577 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~y-------s 577 (979)
....|+...|.+||..|||++|...|.+++|||..|..||++||. +|||++.+||++|+++|+.|+...-. +
T Consensus 86 ~~~~~d~~wv~~WL~~IGL~QY~~~F~~~~iDg~~L~~LT~~DL~-~LGIt~~~HR~kil~aI~~L~~~~~d~~~L~rr~ 164 (265)
T 3tad_C 86 NYGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDDLL-SLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRP 164 (265)
T ss_dssp SGGGCCHHHHHHHHHHHTCGGGHHHHHHHTCCHHHHHTCBHHHHH-HTTCCBHHHHHHHHHHHHHHHHTTTCTTSSSCCC
T ss_pred cccccChHHHHHHHHHcCcHHHHHHHHHcCCCHHHhcccCHHHHH-HcCCCcHHhHHHHHHHHHHHhhcCCCHHHHHhcc
Confidence 356888999999999999999999999999999999999999998 89999999999999999999876511 0
Q ss_pred ----CCCcc--------ChHHHhhhcCCCcchhHHHHHhcCCCchhhh---ccCHHHHHHHcCCCcchhHHH
Q psy4858 578 ----SKDVT--------NLNNFLLNLGQEFSIYTYSMLNAGVDKDSIK---ALSEEQLICECGIHNSIHRLR 634 (979)
Q Consensus 578 ----s~d~~--------~l~ewL~~IGpel~qYtys~l~~GvD~~~L~---~LT~edL~~~cgItn~~Hr~r 634 (979)
..++. .+-+||+.|| |..|..++..+||-+-.+- ..+.+.|-..++|..+=|..|
T Consensus 165 ~~~~~~~~~~v~~Wtn~rv~~Wl~~i~--L~eya~NL~~sGvhGal~~le~~F~~~~lA~~L~iP~~k~~~r 234 (265)
T 3tad_C 165 SDENSITPSEVQQWTNHRVMEWLRSVD--LAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLR 234 (265)
T ss_dssp CSGGGSSGGGGGGCCHHHHHHHHHHTT--CTTTGGGGTTSCCCHHHHHHCTTCCHHHHHHHTTCCTTCHHHH
T ss_pred ccccCCCcccccccchHHHHHHHHhCC--HHHHHhHhhhcCccchhhhccCCCCHHHHHHHhCCCCCchHHH
Confidence 11222 4468999999 9999999999999988886 888999999999998877665
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.31 E-value=6.1e-12 Score=151.18 Aligned_cols=270 Identities=8% Similarity=0.013 Sum_probs=191.5
Q ss_pred HHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhc-cchhhHHHhhc-hhHHHhhhhhccccccccchhhhhh
Q psy4858 201 IGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGT 278 (979)
Q Consensus 201 ~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~ 278 (979)
+....|..+.+.|++.+|+.++.+++..+|..|+++|.++.. .+||..|++.| +.+|+.++..+++.+. +..+.+.
T Consensus 445 v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~--~~k~~AA 522 (778)
T 3opb_A 445 ILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGE--PIRILGC 522 (778)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CC--HHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcch--HHHHHHH
Confidence 445589999999999999999999999999999999999964 59999999999 9999999977654421 3567888
Q ss_pred hHhhhhhhcChhhHHHHhh----cCchHHHHhhhcc-CCh-------------hHHHHHHHhhhhhcccCCc---hhHHH
Q psy4858 279 GILEHLFKHSEGTCSDVIG----LGGLDTVLFECRK-NDI-------------ETLRHCAGALANLSLYGGA---ENQEA 337 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV~----~Ggl~~Ll~l~r~-~d~-------------~~lr~ca~ALaNlAl~~~~---~~q~~ 337 (979)
.+|.+| ..+..... ++. .|++++|+.+|.. ++. ...+.|+.||.|||-+.++ ..+.+
T Consensus 523 ~ALArL-lis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~ 600 (778)
T 3opb_A 523 RALTRM-LIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKH 600 (778)
T ss_dssp HHHHHH-HHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHH-HhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence 999999 54444333 221 4999999999983 221 2378899999999988744 34677
Q ss_pred HHh-cCCcchhccccccCCccchhhHHHHHHHHhcchHHH-HHHHhhhhHHH-HHhhCCccchHhhhhcCChh-----hh
Q psy4858 338 MIK-RKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIE-AAVLKSVQEAA-VLKSGTLDLVEPFVMSHSPS-----EF 409 (979)
Q Consensus 338 mi~-~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~-~~~~~~~~~~~-V~~sG~l~lv~~~~~~~~P~-----~f 409 (979)
|++ .|+..-|..|+++.++.||-.||-+|+||+.+++-. ..+ .+.. -...+.++++..++.+.++. ..
T Consensus 601 Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~----~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag 676 (778)
T 3opb_A 601 IVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF----FNLENPQSLRNFNILVKLLQLSDVESQRAVAA 676 (778)
T ss_dssp HHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT----SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH----HhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence 888 499999999999998999999999999999998843 230 0000 01122367777778777763 23
Q ss_pred hhhhhhc--cc-----CCCchhhhhhhhcccc--chHHHHHHHHHHhhHHhh-h---hhhcCCchhhh-hhCccchhhhh
Q psy4858 410 AKSNLAH--AH-----GQNRNWLQKLVPVLSS--KREEARNLAAFHFCMEAG-I---KKQQGKTDIFK-EIGAIEPLKKV 475 (979)
Q Consensus 410 Ar~~l~~--~~-----g~~~g~L~~LvplL~s--~~eE~q~lAafhl~~ea~-i---Kk~q~n~~~F~-eiGaIe~LkrL 475 (979)
|..++.. .. =...++++.|+.+|.. ++++.|-.+++.++ |.. . ..+++....+. ...-++.|.++
T Consensus 677 ALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~-NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 755 (778)
T 3opb_A 677 IFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF-GLFEVIPDNGTNEVYPLLQENQKLKDALNMS 755 (778)
T ss_dssp HHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHTTCCSTTTTSCCHHHHSCHHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH-HHHHhhccCCChHHHHHHhcChHHHHHHHHH
Confidence 4444421 11 1345799999999999 78887766666553 333 1 22223334443 22356667776
Q ss_pred hcCC
Q psy4858 476 ASCP 479 (979)
Q Consensus 476 asSp 479 (979)
..++
T Consensus 756 lk~~ 759 (778)
T 3opb_A 756 LKRG 759 (778)
T ss_dssp HSSS
T ss_pred HhCC
Confidence 6654
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.26 E-value=5.8e-12 Score=151.70 Aligned_cols=134 Identities=14% Similarity=0.226 Sum_probs=103.6
Q ss_pred CCCCCCCeeEecccCCccchHHHHHHHHHh-----cCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhc
Q psy4858 653 NPDKNLDVFISYRRSNGSQLASLLKVHLEL-----RQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCM 726 (979)
Q Consensus 653 ~~~~~yDVFISYRR~Dg~~~As~L~e~Le~-----~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~ 726 (979)
...+.||+||||++.|.+.+...|...|+. .||++|++.+++.||+ +.++|.++|++|+..|+|+||+|+.
T Consensus 666 ~~~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~--- 742 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLR--- 742 (844)
T ss_dssp SSCCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHH---
T ss_pred ccceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEecccccc---
Confidence 456899999999999965555789999985 5999999999999996 9999999999999999999999986
Q ss_pred ccCCCcCChhHHHHHHHHHhc-----CCeEEEEecCCCCCC-----CCCChHHHHHHhhhcccccccc--cHHHHHHHHH
Q psy4858 727 EDNESECKDWVHREIVAALQS-----GCNIIPILDNFAWPD-----PEQLPADMRAICKFNGVRWIHD--YQDACVDKLE 794 (979)
Q Consensus 727 ~~~i~~~SdWV~rEL~~Al~~-----~k~IIPVl~~f~~pd-----~e~LPedLr~la~~ngi~w~~~--yq~a~IdkIv 794 (979)
|.||+.|+..|+++ +..||||+++- .|+ ..+++.-| .....++|..+ .+..+-++|-
T Consensus 743 -------s~wc~~e~~~a~~~~~~~~~~~~i~i~~~~-~~~~~~~~~~~l~~~~---~~~~~l~w~~~~~~~~~Fw~~l~ 811 (844)
T 3j0a_A 743 -------DGWCLEAFSYAQGRCLSDLNSALIMVVVGS-LSQYQLMKHQSIRGFV---QKQQYLRWPEDFQDVGWFLHKLS 811 (844)
T ss_dssp -------HTSTTHHHHHHHSCCCCSSCTTEEEEESSC-CCSSSCCSCSSTTHHH---HTTCCCCCCSSSTTTTHHHHHHT
T ss_pred -------ChHHHHHHHHHHHHHHHhcCCcEEEEEecc-CChHHhhhhHHHHHHH---hhCCeeeCCCCchhHHHHHHHHH
Confidence 58999999999754 56899998861 222 12344333 34457889754 2345666666
Q ss_pred HHHhhc
Q psy4858 795 RFMRGE 800 (979)
Q Consensus 795 r~I~g~ 800 (979)
.+|..+
T Consensus 812 ~al~~~ 817 (844)
T 3j0a_A 812 QQILKK 817 (844)
T ss_dssp TTTTSC
T ss_pred HHhccc
Confidence 666543
No 66
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=99.24 E-value=4.3e-12 Score=138.45 Aligned_cols=229 Identities=28% Similarity=0.409 Sum_probs=157.0
Q ss_pred ChhHHHHHHHhhhhhcccCCchhHHHHHh-cCCcchhccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHh
Q psy4858 312 DIETLRHCAGALANLSLYGGAENQEAMIK-RKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLK 390 (979)
Q Consensus 312 d~~~lr~ca~ALaNlAl~~~~~~q~~mi~-~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~ 390 (979)
..++|+.+-.+-..++-+.....+.++-. -|++.|++..+. .+++- +.+--.+++.+++.+ +.-
T Consensus 22 ~~~llee~~r~~~Pfs~W~~~~V~aWLe~~iGmp~~Yv~~~r---~nvkS---G~~Ll~LSd~dLeke---------LGI 86 (334)
T 3tac_B 22 KHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACR---ANVKS---GAIMSALSDTEIQRE---------IGI 86 (334)
T ss_dssp HHHHHHHHHHTTCCGGGCCHHHHHHHHHHTTCCCHHHHHHHH---HHCCS---HHHHHTCCHHHHHHT---------TCC
T ss_pred HHHHHHhcccCCCChhhCCcHHHHHHHHHHhcChHHHHHHHH---HHccc---hHHHHhCCHHHHHHH---------hCC
Confidence 36778888788888999998888999866 799999988776 34444 344445788999888 332
Q ss_pred hCCccc------hHhhhhcCChhhhhhhh----------------------------------h---hcccCC------C
Q psy4858 391 SGTLDL------VEPFVMSHSPSEFAKSN----------------------------------L---AHAHGQ------N 421 (979)
Q Consensus 391 sG~l~l------v~~~~~~~~P~~fAr~~----------------------------------l---~~~~g~------~ 421 (979)
+..++. ++.+++..+|...+... . ..++|. .
T Consensus 87 ~nPLHRKKL~LAIqel~~~~sp~~p~~~r~~~g~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~l~~g~ldh~WV~ 166 (334)
T 3tac_B 87 SNPLHRLKLRLAIQEMVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAQAKTKESEEGSWAQCPVFLQTLAYGDMNHEWIG 166 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCCCCCGGGCCCCCCSSCBHHHHHHHHHHHTTC--------------------CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccCCCCccccccccccccchhhhhhhhcccccccccccccccccchhhhhhcccCccCcch
Confidence 233332 34444333332221110 0 012221 1
Q ss_pred chhhhhhhhccccchHHHHHHHHHHhhH------Hhhhh----hhcCCchhhhhhC---ccchhhhhhcCCccchhhhhh
Q psy4858 422 RNWLQKLVPVLSSKREEARNLAAFHFCM------EAGIK----KQQGKTDIFKEIG---AIEPLKKVASCPNAVASKYAA 488 (979)
Q Consensus 422 ~g~L~~LvplL~s~~eE~q~lAafhl~~------ea~iK----k~q~n~~~F~eiG---aIe~LkrLasSpnd~asklAa 488 (979)
..||+.+ .-.|+-.+|+.|. +...+ ...+..+.|+..- ||++|+++ +|..
T Consensus 167 ~~WL~dI--------GLpQY~~~F~~~~VDgR~L~~Lt~~DL~~~LgIt~~~Hr~sI~~gI~~Lr~~---------~~d~ 229 (334)
T 3tac_B 167 NEWLPSL--------GLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRL---------NYDR 229 (334)
T ss_dssp HTHHHHT--------TCGGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCCCHHHHHHHHHHHHHHHHT---------TTCH
T ss_pred hhhcccc--------ChHHhHHHHHhcCcchhhhhhccHHHHHhccCCCcHHHHHHHHHHHHHhhhc---------CCCH
Confidence 2355554 2344555555442 11122 2335556666653 89999988 7999
Q ss_pred hhHhhccCcccCcCCCCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhh----h--ccccCCCChHHHHH
Q psy4858 489 QTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEH----L--RDDIGIHNGIQRRR 562 (979)
Q Consensus 489 qaLe~~gEevp~kl~~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeD----L--~~dLGI~n~ghRKr 562 (979)
++|+.+++++++... +|..||+++|.+||++|||.+|+++|.++||+|.++ .|++.+ | ...|+..+...|+.
T Consensus 230 ~~L~~Rr~~~~~~~~-dv~vWtn~rV~~Wl~sIdL~EYA~NL~~SGVHGal~-~Le~~F~~~~lA~~L~IP~~kt~~Rrh 307 (334)
T 3tac_B 230 KELERRREASQHEIK-DVLVWSNDRVIRWIQAIGLREYANNILESGVHGSLI-ALDENFDYSSLALLLQIPTQNTQARQI 307 (334)
T ss_dssp HHHHHHHHHTSSSSC-CGGGCCHHHHHHHHHHTTCHHHHGGGTTSCCCHHHH-HHCTTCCHHHHHHHTTCCTTCHHHHHH
T ss_pred HHHhhccccccccCc-cccccccHHHHHHHHhcChHHhhhhhhhcCccceee-eccCCCCHHHHHHHhCCCCCchhhHHH
Confidence 999999999988765 899999999999999999999999999999999998 777765 3 23567778999999
Q ss_pred HHHHHHHHHhhc
Q psy4858 563 FERELQNLKKMA 574 (979)
Q Consensus 563 LlreI~~Lk~~~ 574 (979)
|..+++.|....
T Consensus 308 L~~ef~~L~~~~ 319 (334)
T 3tac_B 308 LEREYNNLLALG 319 (334)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999998655
No 67
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.22 E-value=3.1e-11 Score=130.58 Aligned_cols=166 Identities=11% Similarity=0.085 Sum_probs=140.9
Q ss_pred hhHHhHHHHHHHHhhcc-chhhHHHhhc-hhHHHh-hhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHH
Q psy4858 227 LDLQFSSARLLEQCLTT-ENRDHVVENG-LDKVVR-VACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDT 303 (979)
Q Consensus 227 ~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G-l~~lv~-la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~ 303 (979)
.+.+..|...|+++... +|...+++.| +.+++. +. ++ .+.++...+..+|.++-.++++.+..+++.||++.
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL----~s-~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~ 128 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL----EA-GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT----TC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH----cC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHH
Confidence 46888999999999864 8999999998 999999 88 33 45688888999999998889999999999999999
Q ss_pred HHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc-hHHHHHHHh
Q psy4858 304 VLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN-TEIEAAVLK 381 (979)
Q Consensus 304 Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn-~ei~~~~~~ 381 (979)
|+.++++. ++.+++.|+.||+||+-+. +..+..+++.|++..|+.+..+++..+|..||.||++|+.. ++....
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~-~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~--- 204 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQ-EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT--- 204 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHH---
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHH---
Confidence 99999975 8999999999999997543 34566788899999999999999999999999999999875 666666
Q ss_pred hhhHHHHHhhCCccchHhhhhcCChh
Q psy4858 382 SVQEAAVLKSGTLDLVEPFVMSHSPS 407 (979)
Q Consensus 382 ~~~~~~V~~sG~l~lv~~~~~~~~P~ 407 (979)
|++.|.++.+..++.+.++.
T Consensus 205 ------vv~~g~i~~Lv~LL~~~d~~ 224 (296)
T 1xqr_A 205 ------LCSMGMVQQLVALVRTEHSP 224 (296)
T ss_dssp ------HHHTTHHHHHHHHHTSCCST
T ss_pred ------HHHcCCHHHHHHHHcCCChh
Confidence 77888877777777765553
No 68
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=99.19 E-value=1e-11 Score=111.47 Aligned_cols=68 Identities=24% Similarity=0.441 Sum_probs=58.0
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
-+..|+.++|.+||+.+||++|.+.|.++++| ++.|+.||++||+ +|||+.+|||+||+.+|+.|+..
T Consensus 10 ~~~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~-~lGI~~~GhRkkIl~ai~~Lr~~ 78 (82)
T 2kso_A 10 LVPRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKRIAYSLLGLKDQ 78 (82)
T ss_dssp --------CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHH-HHHCCCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCCcchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999 9999999999997 89999999999999999999865
No 69
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.2e-11 Score=110.74 Aligned_cols=70 Identities=27% Similarity=0.461 Sum_probs=57.1
Q ss_pred CCCCCCC-HHHHHHHHHHcCchHHHHHHHhcC-CChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWS-TEDVREWVRQIGFAEYANNFVESR-VDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS-~EDVa~WL~~IGL~eY~~~F~en~-IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
++++.|+ ..+|.+||+.+||++|.+.|.+++ +||+.|+.||++||+ ++||++.|||+||+++|+.|+...
T Consensus 7 ~~~p~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~ai~~l~~~~ 78 (83)
T 2qkq_A 7 QRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLL-RIGVTLAGHQKKILASVQHMKSQA 78 (83)
T ss_dssp -------CCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHTTC----
T ss_pred CCCCCCCccchHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3456676 579999999999999999999999 899999999999998 699999999999999999888653
No 70
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=99.13 E-value=3.6e-11 Score=107.30 Aligned_cols=69 Identities=17% Similarity=0.383 Sum_probs=61.5
Q ss_pred CCCCCC-HHHHHHHHHHcCchHHHHHHHhcCC-ChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 505 QVPLWS-TEDVREWVRQIGFAEYANNFVESRV-DGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 505 ~V~~WS-~EDVa~WL~~IGL~eY~~~F~en~I-DG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+++.|+ ..+|.+||+.+||++|.+.|.++++ +++.|+.||++||+ ++||+.+|||+||+++|+.|+...
T Consensus 4 ~~p~~~~~~~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~ai~~l~~~~ 74 (82)
T 1b4f_A 4 TRPDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILNSIQVMRAQM 74 (82)
T ss_dssp --CCCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 345554 5699999999999999999999999 79999999999998 799999999999999999998653
No 71
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=6.1e-11 Score=107.43 Aligned_cols=69 Identities=19% Similarity=0.357 Sum_probs=63.0
Q ss_pred CCCCCC-HHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 505 QVPLWS-TEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 505 ~V~~WS-~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+.|+ .++|.+||..+||++|.+.|.++++| ++.|+.||++||+ +|||+.+|||+||+++|+.|+...
T Consensus 5 ~~p~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhRkkIl~ai~~l~~~~ 75 (88)
T 2e8n_A 5 SSGEGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVK-RIGVRLPGHQKRIAYSLLGLKDQV 75 (88)
T ss_dssp CCCCCCSCSSHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHH-HTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHhh
Confidence 345565 58999999999999999999999999 8999999999998 799999999999999999998654
No 72
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=99.11 E-value=3.1e-11 Score=112.28 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=64.2
Q ss_pred CCCCCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 506 V~~WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
...+...+|.+||..+||++|++.|.+++|| |+.|+.||++||+ +|||++.|||+||+++|+.|+....
T Consensus 21 m~~~~~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLk-eLGIt~~GhRkkIL~aI~~Lr~~~~ 90 (100)
T 2kg5_A 21 MAAPQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELK-QLGISATGHRKRILRLLQTGTEEGS 90 (100)
T ss_dssp CSCCTTCBHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHTTTTTCCC
T ss_pred cCCCCcChHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHH-HCCCCChhHHHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999 9999999999998 7999999999999999999987653
No 73
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.6e-11 Score=107.91 Aligned_cols=66 Identities=26% Similarity=0.515 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHcCchHHHHHHHhcCCChhHHh---cCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL---~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
..++..+|.+||+.+||++|.+.|.+++|||..++ .||++||+ +|||+++|||+||+++|+.|+..
T Consensus 8 ~~~~~~~V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~-~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 8 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp CCCCCCCHHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHH-HSSCCCHHHHHHHHHHHHHSCCC
T ss_pred CCCChhHHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHhcC
Confidence 46778899999999999999999999999999776 99999998 79999999999999999998754
No 74
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=99.09 E-value=5.5e-11 Score=106.17 Aligned_cols=63 Identities=17% Similarity=0.405 Sum_probs=59.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+|.+||..+||++|.+.|.++++| ++.|+.||++||+ +|||+..|||+||+++|+.|+...
T Consensus 7 ~~~V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~-~lGI~~~GhrkkIl~ai~~l~~~~ 70 (81)
T 1ucv_A 7 GLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVR-ALGITLMGHQKKILGSIQTMRAQL 70 (81)
T ss_dssp CSBHHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHH-hCCCCChhHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 8999999999998 799999999999999999999765
No 75
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=99.08 E-value=7.4e-11 Score=107.79 Aligned_cols=66 Identities=17% Similarity=0.342 Sum_probs=62.2
Q ss_pred CCCCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 507 PLWSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
..|+.++|.+||..+||++|.+.|.++++| ++.|..|+++||+ +|||+.+|||+||+.+|+.|+..
T Consensus 21 ~~~~~~~V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~-~lGIt~~GHRkkIL~ai~~Lr~q 87 (90)
T 3h8m_A 21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVM-SLGITLVGHQKKIMSSIQTMRAQ 87 (90)
T ss_dssp CCCCCSSHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999 8999999999997 79999999999999999999864
No 76
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=99.08 E-value=3.7e-11 Score=109.00 Aligned_cols=66 Identities=24% Similarity=0.462 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
....|+..+|.+||+.+||++|.+.|.++++| .+.|..||++||+ +|||+.+|||+||+++|+.||
T Consensus 20 ~~~~~~~~~V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~-~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 20 HMSGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLE-EAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp --CCCCSCSSHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCcCcHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCCHHHHHHHHHHHHHcC
Confidence 34789999999999999999999999999997 5889999999998 799999999999999999875
No 77
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=3.7e-11 Score=111.19 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=64.8
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.++..|...+|.+||..+||++|.+.|.+|++|+ +.|..|+++||+ +|||++++|||||+++|+.|+...
T Consensus 16 ~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~-~lGIt~~gHrkkIl~ai~~lr~~~ 86 (97)
T 2dl0_A 16 KPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQ-EAGITEERHIRKLLSAARLFKLPP 86 (97)
T ss_dssp CCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHH-HHTCCCHHHHHHHHHHHHTCCCCC
T ss_pred CCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHH-HCCCCCHHHHHHHHHHHHHHHccc
Confidence 4667799999999999999999999999999998 789999999998 899999999999999999988654
No 78
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.5e-10 Score=107.03 Aligned_cols=69 Identities=19% Similarity=0.435 Sum_probs=62.8
Q ss_pred CCCCC-CHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 505 QVPLW-STEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 505 ~V~~W-S~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+.+ +..+|.+||+.+||++|.+.|.+++|| ++.|+.||++||+ +|||+..|||+||+++|+.|+...
T Consensus 15 ~~p~~~~~~~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~-~lGI~~~GhRkkIl~ai~~l~~~~ 85 (99)
T 2eao_A 15 SIPDFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLL-RIGITLAGHQKKILNSIHSMRVQI 85 (99)
T ss_dssp CCCCTTSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcchHHHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHHh
Confidence 34444 467999999999999999999999999 9999999999998 799999999999999999999765
No 79
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=99.00 E-value=1.8e-10 Score=103.57 Aligned_cols=62 Identities=24% Similarity=0.399 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHH
Q psy4858 508 LWSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNL 570 (979)
Q Consensus 508 ~WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~L 570 (979)
..+.++|.+||..+||++|.+.|.+++++ ++.|..|+++||+ +|||+.+|||+||+.+|+.|
T Consensus 20 ~~~~~~V~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~-~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 20 GIPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLT-QMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp CCCCSSHHHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHH-HTTCCCHHHHHHHHHHHHHC
T ss_pred CcchhHHHHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHH-HCCCCCHHHHHHHHHHHHhC
Confidence 34578999999999999999999999999 9999999999997 89999999999999999864
No 80
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=99.00 E-value=2.1e-10 Score=105.16 Aligned_cols=64 Identities=17% Similarity=0.420 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHcCchHHHHHHHhcCC-ChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 510 STEDVREWVRQIGFAEYANNFVESRV-DGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 510 S~EDVa~WL~~IGL~eY~~~F~en~I-DG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+..+|.+||+.+||++|.+.|.++++ +++.|+.||++||+ +|||+..|||+||+++|+.|+...
T Consensus 25 ~~~~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~-~lGI~~~GhrkkIl~ai~~L~~~~ 89 (94)
T 1b0x_A 25 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLA-RIGITAITHQNKILSSVQAMRTQM 89 (94)
T ss_dssp SSCCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999 88999999999998 799999999999999999998643
No 81
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=98.99 E-value=2e-10 Score=104.09 Aligned_cols=64 Identities=20% Similarity=0.431 Sum_probs=55.9
Q ss_pred CCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 509 WSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 509 WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+.++|.+||..+||++|.+.|.++++| .+.|..|+++||+ ++||+.+|||+||+++|+.|+..
T Consensus 19 ~~~~~V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~-~LGIt~~GHRkkIL~ai~~Lr~q 83 (86)
T 3kka_C 19 VPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKRIAYSLLGLKDQ 83 (86)
T ss_dssp ----CHHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHCC--
T ss_pred cchhHHHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999 6889999999998 79999999999999999988653
No 82
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=98.98 E-value=4.4e-10 Score=99.16 Aligned_cols=62 Identities=11% Similarity=0.267 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcc
Q psy4858 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMAD 575 (979)
Q Consensus 512 EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ 575 (979)
..|..||+.+||++|.+.|.+++||++.|+.||++||+ +|||. .|||+||+++|+.++..-.
T Consensus 3 ~~v~~wL~~lgL~~Y~~~F~~~~id~e~l~~lt~~DL~-~lGI~-~G~RkkIl~ai~~~~~~~~ 64 (74)
T 3k1r_B 3 SPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLR-SISVP-LGPREKILGAVRRRRQAME 64 (74)
T ss_dssp CHHHHHHHTTTCGGGHHHHHHTTCCHHHHTTCCHHHHH-HTTCC-HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCCHHHHHHHHHcCcCHHHHhHCCHHHHH-HcCCC-cchHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999997 89999 9999999999999987653
No 83
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.95 E-value=4.6e-10 Score=101.10 Aligned_cols=61 Identities=16% Similarity=0.350 Sum_probs=57.0
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+|++||.++|+++|.+.|.+|+|+| +.|+.|+.++|+ +|||++.|||.+|+++++.|+...
T Consensus 17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~Lk-ElGI~kvGdRirIlk~vk~Lr~~~ 78 (85)
T 1ow5_A 17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILI-ALGVNKIGDRLKILRKSKSFQRDK 78 (85)
T ss_dssp HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHH-HHTCCCHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHH-HhCCCcccHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 999999999998 899999999999999999998754
No 84
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.93 E-value=5.8e-10 Score=101.80 Aligned_cols=63 Identities=25% Similarity=0.376 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+|.+||+.+||++|.+.|.+++++ .+.|+.||++||+ +|||+..+||+||+++|+.|+...
T Consensus 15 ~~~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~-~lGI~~~GHrkkIl~ai~~L~~~~ 78 (91)
T 1x40_A 15 NVDIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQ-KIGISPTGHRRRILKQLQIILSKM 78 (91)
T ss_dssp CCBHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHH-HCCCCCHhHHHHHHHHHHHHHhhc
Confidence 46799999999999999999999996 5789999999998 799999999999999999999764
No 85
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.91 E-value=7.2e-10 Score=98.53 Aligned_cols=67 Identities=19% Similarity=0.320 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+..+.|.+||..+||++|.+.|.++++|+ +.+..|+++||. +|||+.++||+||+++++.|+...
T Consensus 8 ~~~~~~~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~-~lGI~~~ghrkkil~ai~~L~~~~ 75 (78)
T 1v38_A 8 RRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLI-ELNIADPEDRARLLSAAESLLSGP 75 (78)
T ss_dssp CCSSCCBHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHH-HTTTCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCcCcHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHH-HcCCCCHHHHHHHHHHHHHHHhcc
Confidence 3446788999999999999999999999975 668899999998 799999999999999999998654
No 86
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=98.89 E-value=1.3e-09 Score=97.99 Aligned_cols=68 Identities=21% Similarity=0.402 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHH-HHcCchH---HHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 504 QQVPLWSTEDVREWV-RQIGFAE---YANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL-~~IGL~e---Y~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
..|..||+++|+.|+ ...||.+ .+++|++|.|+|+.|+.|+.+||+ +|++.+.++|.+|+..|+.|+.
T Consensus 7 ~~v~~Wt~~~V~~W~~~~lg~~d~d~~~~~f~~ndItG~vL~eL~leDlK-EL~i~s~~~r~~lk~~In~Lr~ 78 (85)
T 1uqv_A 7 EDFSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQ-DLCDGDLNKAIKFKILINKMRD 78 (85)
T ss_dssp CCTTTCCHHHHHHHHHHHHSSCTTSTHHHHHHHSCCCGGGHHHHHHHHHH-HTSSSCHHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHhCCCCccHHHHHHHHcCCchhhHHHcCHHHHH-HhCchHHHHHHHHHHHHHHHHH
Confidence 478999999999999 6779976 789999999999999999999998 7999999999999999999974
No 87
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2.5e-09 Score=95.85 Aligned_cols=68 Identities=29% Similarity=0.469 Sum_probs=61.0
Q ss_pred CcCCCCCCCCCHHHHHHHHHHcCchHH-HHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHH
Q psy4858 500 HKLSQQVPLWSTEDVREWVRQIGFAEY-ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568 (979)
Q Consensus 500 ~kl~~~V~~WS~EDVa~WL~~IGL~eY-~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~ 568 (979)
-.+..+...||+++|+.||+.+||++| ++.|.+++|||..|+.|++++|..++|+ +..+++||+..|+
T Consensus 9 w~pP~dLs~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~l-s~Lq~kKi~~fI~ 77 (84)
T 2dkz_A 9 WQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFKL-SKLQVKKIMQFIN 77 (84)
T ss_dssp CCCCSCCSSCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCC-CHHHHHHHHHHHH
T ss_pred CCCchhhhhcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHhhcCC-CHHHHHHHHHHHh
Confidence 334457889999999999999999975 7999999999999999999999999999 6888889988885
No 88
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=98.85 E-value=7.2e-10 Score=103.32 Aligned_cols=65 Identities=29% Similarity=0.550 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHcCchHHHHHHHhcCCChhHHh---cCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 509 WS~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL---~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
....+|.+||+.+||++|.+.|.++++||..++ .||++||+ +|||+.+|||+||+++|+.|+...
T Consensus 27 ~~~~~V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~-eLGIt~~GHRkkIL~aI~~L~~~~ 94 (101)
T 2lmr_A 27 TLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLR-DIGISDPQHRRKLLQAARSLPKVK 94 (101)
T ss_dssp CSSCCHHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHH-HHTCCCHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHHhcc
Confidence 345589999999999999999999999997554 69999998 899999999999999999988754
No 89
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=107.38 Aligned_cols=60 Identities=22% Similarity=0.547 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHc-CchHHHHHHHhcCCChhHHhcCChhh---hccccCCCChHHHHHHH
Q psy4858 505 QVPLWSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEH---LRDDIGIHNGIQRRRFE 564 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~I-GL~eY~~~F~en~IDG~~LL~LTeeD---L~~dLGI~n~ghRKrLl 564 (979)
+|..||+++|++||... ||++|++.|++|.|+|..|++|+.++ |...|||.+++||+||.
T Consensus 77 ~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 77 EVHNWTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp HHHHCCHHHHHHHHHHHTCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred cchhCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 57899999999999985 99999999999999999999999864 45689999999999988
No 90
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=98.77 E-value=5.3e-09 Score=103.34 Aligned_cols=64 Identities=20% Similarity=0.448 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 509 WSTEDVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 509 WS~EDVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
..+.+|.+||+.+||++|.+.|.++++| ++.|..||++||. ++||+++|||+||+.+|+.|+..
T Consensus 77 ~~p~~v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~-~lGI~~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 77 HKPANLAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQ-EIGITKLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp SCCSCHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999 7899999999996 89999999999999999998764
No 91
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=98.76 E-value=2.1e-09 Score=106.35 Aligned_cols=64 Identities=16% Similarity=0.452 Sum_probs=57.2
Q ss_pred CCCCCCHHHHHHHHHHc-CchHHHHHHHhcCCChhHHhcCChhh---hccccCCCChHHHHHHH-HHHH
Q psy4858 505 QVPLWSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEH---LRDDIGIHNGIQRRRFE-RELQ 568 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~I-GL~eY~~~F~en~IDG~~LL~LTeeD---L~~dLGI~n~ghRKrLl-reI~ 568 (979)
+|..||+++|++||... ||++|++.|++|.|+|..|++|+.++ |...|||.+.+||+||. +++.
T Consensus 77 ~V~nWTvedV~~WL~~~v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~lkald 145 (150)
T 2k60_A 77 EVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALD 145 (150)
T ss_dssp HHHHCCHHHHHHHHHHHHCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 57889999999999666 99999999999999999999999985 66789999999999987 4544
No 92
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=98.63 E-value=3.1e-08 Score=97.58 Aligned_cols=63 Identities=24% Similarity=0.347 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHcCchHHHHHHHhcCCCh-hHHhcCChhhhccccCCCChHHHHHHHHHHHH
Q psy4858 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQN 569 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY~~~F~en~IDG-~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~ 569 (979)
..++...|.+||..+||++|.++|.+++++| +.|..||++||..++||++.|||+||+.+|++
T Consensus 84 d~~~~~~v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dLl~~lGI~~~gHrkrIl~ai~~ 147 (148)
T 2kiv_A 84 DGAHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVELINVLKINLIGHRKRILASLGD 147 (148)
T ss_dssp CCCCCSSHHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHHHHHTCCCCHHHHHHHHHHHTC
T ss_pred CCCCcchHHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHHHHhCCCCChhHHHHHHHHHhh
Confidence 3466789999999999999999999999998 78889999998558999999999999998863
No 93
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.59 E-value=5.5e-08 Score=86.82 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=57.7
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||+.+| +.+|...|..+||| .+.|..||++||+ ++||++.+||.+|+.+|+.++..
T Consensus 8 ~~V~~WL~~lg--L~~Y~~~F~~~~~d~~~~l~~lt~~DL~-~lGI~~~GhrkkIl~ai~~l~~~ 69 (81)
T 1ucv_A 8 LTVGDWLDSIR--MGRYRDHFAAGGYSSLGMVLRMNAQDVR-ALGITLMGHQKKILGSIQTMRAQ 69 (81)
T ss_dssp SBHHHHHHHTT--CGGGHHHHHHTTCCBHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCC--CHHHHHHHHHcCCChHHHHHHcCHHHHH-hCCCCChhHHHHHHHHHHHHHHH
Confidence 58899999999 99999999999998 9999999999999 59999999999999999999865
No 94
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=98.58 E-value=7.7e-08 Score=85.48 Aligned_cols=64 Identities=23% Similarity=0.386 Sum_probs=59.1
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+..+.+||+.++ +.+|...|..+|| +.+.+..||++||.. +||++..||.+|+.+|+.|+..
T Consensus 10 ~~~~~V~eWL~~i~--L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~-lGI~~~ghrkkil~ai~~L~~~ 74 (78)
T 1v38_A 10 ENHQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIE-LNIADPEDRARLLSAAESLLSG 74 (78)
T ss_dssp SSCCBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHH-TTTCCHHHHHHHHHHHHHHHSC
T ss_pred CCcCcHHHHHHHCC--CHHHHHHHHHcCCCCHHHHhhcCHHHHHH-cCCCCHHHHHHHHHHHHHHHhc
Confidence 45678999999999 9999999999999 589999999999995 9999999999999999998864
No 95
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=98.58 E-value=1.1e-07 Score=88.50 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=60.5
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
......+.+||+.+| |.+|...|..+||| ++.|..||++||+. +||++.+||.+|+.+|+.++...
T Consensus 23 ~~~~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~Lt~eDLke-LGIt~~GhRkkIL~aI~~Lr~~~ 89 (100)
T 2kg5_A 23 APQDLDIAVWLATVH--LEQYADTFRRHGLATAGAARGLGHEELKQ-LGISATGHRKRILRLLQTGTEEG 89 (100)
T ss_dssp CCTTCBHHHHHGGGT--CGGGHHHHHHTTCCBHHHHTTCCHHHHHH-HTCCCHHHHHHHHHHHTTTTTCC
T ss_pred CCCcChHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhcCHHHHHH-CCCCChhHHHHHHHHHHHHHhcc
Confidence 345578999999999 99999999999998 99999999999995 99999999999999999998653
No 96
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=98.57 E-value=4.6e-08 Score=91.15 Aligned_cols=78 Identities=24% Similarity=0.427 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCccChHHHhhhcCCCcchhHHHHHhcCCCch-hh--hccCHHHHHHHcCCCcchhHHH
Q psy4858 558 IQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKD-SI--KALSEEQLICECGIHNSIHRLR 634 (979)
Q Consensus 558 ghRKrLlreI~~Lk~~~~yss~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~-~L--~~LT~edL~~~cgItn~~Hr~r 634 (979)
.+||++.+++..- ..+...+.+||+.+| +.+|...|..+|||.. +| ..||++||+ ++||++.+||.+
T Consensus 6 ~~r~~~~~~~~~~-------~w~~~~V~~WL~~ig--L~qY~~~F~~~gid~~~~l~~~~lt~~DL~-~lGI~~~GhRkk 75 (103)
T 2ke7_A 6 SLYKKAGSEMNGP-------RCPVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLL-EIGILNSGHRQR 75 (103)
T ss_dssp ------------------------CCTTHHHHHTT--CTTCHHHHHHTTCCCHHHHHTTCCCHHHHH-HHTCCCHHHHHH
T ss_pred HHHHHhccccccc-------CCCHhHHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhcccCCHHHHh-HCCCCCHHHHHH
Confidence 4899988887632 344678999999999 9999999999999865 56 699999999 599999999999
Q ss_pred HHHHHHhhhhc
Q psy4858 635 IMEAIHEIERE 645 (979)
Q Consensus 635 Il~AIk~l~~~ 645 (979)
|+.+|+.++..
T Consensus 76 Il~ai~~L~~~ 86 (103)
T 2ke7_A 76 ILQAIQLLPKM 86 (103)
T ss_dssp HHHHHHHSCC-
T ss_pred HHHHHHHHHhc
Confidence 99999998743
No 97
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=98.56 E-value=8e-08 Score=85.69 Aligned_cols=61 Identities=20% Similarity=0.405 Sum_probs=57.5
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||+.+| +.+|...|..+|| |.+.|..||++||+ ++||++.+||.+|+.+|+.++..
T Consensus 12 ~~v~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 12 NTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp SSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCC--CHHHHHHHHHcCCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999 9999999999999 79999999999999 59999999999999999998754
No 98
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=7.6e-08 Score=89.06 Aligned_cols=63 Identities=21% Similarity=0.423 Sum_probs=58.1
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.-..+.+||+.|+ |.+|...|.++||| .+.|..||++||. ++||++..||.+|+.+|+.++..
T Consensus 22 ~~~sV~eWL~~ig--L~qY~~~F~~~g~d~le~l~~lt~~DL~-~lGIt~~gHrkkIl~ai~~lr~~ 85 (97)
T 2dl0_A 22 CISSVSDWLISIG--LPMYAGTLSTAGFSTLSQVPSLSHTCLQ-EAGITEERHIRKLLSAARLFKLP 85 (97)
T ss_dssp CCCSHHHHHHHHT--CGGGHHHHHHHTCCSTTSGGGCCHHHHH-HHTCCCHHHHHHHHHHHHTCCCC
T ss_pred ccCcHHHHHHHCC--CHHHHHHHHHcCCCcHHHHHhcCHHHHH-HCCCCCHHHHHHHHHHHHHHHcc
Confidence 3458899999999 99999999999998 6999999999999 59999999999999999998754
No 99
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=98.54 E-value=9.7e-08 Score=86.62 Aligned_cols=63 Identities=17% Similarity=0.422 Sum_probs=57.5
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
...+..+.+||+.|| +.+|...|..+||| .+.|..||++||+ ++||++..||.+|+.||+.|+
T Consensus 23 ~~~~~~V~eWL~~lg--L~qY~~~F~~~g~~~le~l~~lt~~DL~-~lGIt~~GHRkkIL~aI~~LK 86 (86)
T 2k4p_A 23 GLGEAGMSAWLRAIG--LERYEEGLVHNGWDDLEFLSDITEEDLE-EAGVQDPAHKRLLLDTLQLSK 86 (86)
T ss_dssp CCCSCSSHHHHHTTT--CGGGHHHHHTTTCCCHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHCC
T ss_pred CCCcCcHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCCHHHHHHHHHHHHHcC
Confidence 345678999999999 99999999999995 7999999999999 599999999999999999864
No 100
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=98.54 E-value=7e-08 Score=86.58 Aligned_cols=63 Identities=14% Similarity=0.318 Sum_probs=56.8
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
....+.+||+.+| +.+|...|..+||| .+.|..||++||+ ++||++.+||.+|+.||+.++..
T Consensus 15 ~~~~V~~WL~~lg--L~qY~~~F~~~gid~~~~L~~lt~~DL~-~lGI~~~GhRkkIl~ai~~Lr~~ 78 (82)
T 2kso_A 15 SHMTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKRIAYSLLGLKDQ 78 (82)
T ss_dssp ---CHHHHHHHTT--CTTHHHHHHHTTCCSHHHHTTCCHHHHH-HHHCCCTTHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHH
Confidence 3468899999999 99999999999998 9999999999998 59999999999999999998754
No 101
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=98.52 E-value=1.3e-07 Score=84.91 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=55.2
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhh
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l 642 (979)
...+.+||..|| +.+|...|..+||| .+.|..||++||+ ++||++.+||.||+.+|+.|
T Consensus 23 ~~~V~~WL~~lg--L~qY~~~F~~~g~~s~e~l~~lt~~DL~-~lGIt~~GHRkkIL~aiq~l 82 (82)
T 3hil_A 23 YRTVSEWLESIR--MKRYILHFHSAGLDTMECVLELTAEDLT-QMGITLPGHQKRILCSIQGF 82 (82)
T ss_dssp CSSHHHHHHHTT--CGGGHHHHHHTTCCSGGGGTTCCHHHHH-HTTCCCHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhCC--HHHHHHHHHHcCCChHHHHhcCCHHHHH-HCCCCCHHHHHHHHHHHHhC
Confidence 358899999999 99999999999998 9999999999998 59999999999999999864
No 102
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=98.51 E-value=1.7e-07 Score=85.68 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=57.3
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
...+.+||..+| +.+|...|..+||| .+.|..||++||+ ++||++.+||.||+.+|+.|+.
T Consensus 25 ~~~V~~WL~~lg--L~qY~~~F~~~g~d~~e~l~~lt~~DL~-~lGIt~~GHRkkIL~ai~~Lr~ 86 (90)
T 3h8m_A 25 FCSVGEWLQAIK--MERYKDNFTAAGYNSLESVARMTIEDVM-SLGITLVGHQKKIMSSIQTMRA 86 (90)
T ss_dssp CSSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCC--hHHHHHHHHHcCCChHHHHhhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 358899999999 99999999999998 9999999999998 5999999999999999999875
No 103
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=98.51 E-value=9.6e-08 Score=84.12 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=57.0
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.++..+.+||+.+| +.+|...|..++||+..|..||++||+ ++||++.+||.+|+.+|+.++..
T Consensus 5 Ws~~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~-~lGI~~~Ghr~kIl~aI~~l~~~ 68 (76)
T 2f3n_A 5 WSKFDVGDWLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHRENIERALRQLDGS 68 (76)
T ss_dssp CCHHHHHHHHHHTT--CGGGHHHHHHTTCCGGGGGGCCHHHHH-HTTCCCHHHHHHHHHHHHTC---
T ss_pred CCHHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHccCCHHHHH-HcCCCChhHHHHHHHHHHHHHHH
Confidence 34567899999998 999999999999999999999999997 69999999999999999988753
No 104
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=98.50 E-value=1.1e-07 Score=85.13 Aligned_cols=61 Identities=18% Similarity=0.357 Sum_probs=55.5
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcC-CCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAG-VDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~G-vD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||+.+| +.+|...|..+| +|++.|..||++||+. +||++.+||.+|+.+|+.++..
T Consensus 16 ~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~~-lGI~~~GhrkkIl~ai~~l~~~ 77 (83)
T 2qkq_A 16 GSVGEWLRAIK--MGRYEESFAAAGFGSFELVSQISAEDLLR-IGVTLAGHQKKILASVQHMKSQ 77 (83)
T ss_dssp SSHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHHH-HTCCCHHHHHHHHHHHTTC---
T ss_pred chHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhCCHHHHHH-CCCCCHHHHHHHHHHHHHHHHH
Confidence 58999999999 999999999999 6999999999999995 9999999999999999998754
No 105
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.2e-07 Score=85.93 Aligned_cols=61 Identities=15% Similarity=0.334 Sum_probs=57.4
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||+.+| +.+|...|..+||| .+.|..||++||+ ++||++.+||.+|+.+|+.++..
T Consensus 13 ~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~l~~lt~~dL~-~lGI~~~GhRkkIl~ai~~l~~~ 74 (88)
T 2e8n_A 13 RTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDVK-RIGVRLPGHQKRIAYSLLGLKDQ 74 (88)
T ss_dssp SSHHHHHHHTT--CGGGHHHHHHHTCSSHHHHTTSCTTHHH-HTTCCSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHCC--CHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHh
Confidence 57899999999 99999999999998 9999999999999 59999999999999999999854
No 106
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=98.47 E-value=1.8e-07 Score=85.69 Aligned_cols=62 Identities=18% Similarity=0.412 Sum_probs=57.8
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...+.+||+.+| +.+|...|..+|| |.+.|..||++||+ ++||++.+||.+|+.+|+.++..
T Consensus 26 ~~~V~~WL~~lg--L~~Y~~~F~~~g~~~~~~l~~lt~~DL~-~lGI~~~GhrkkIl~ai~~L~~~ 88 (94)
T 1b0x_A 26 VVSVGDWLQAIK--MDRYKDNFTAAGYTTLEAVVHMSQDDLA-RIGITAITHQNKILSSVQAMRTQ 88 (94)
T ss_dssp SCCHHHHHHHTT--CGGGHHHHHHTTCCSHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCC--cHHHHHHHHHcCCCCHHHHhhCCHHHHH-HCCCCChhHHHHHHHHHHHHHHH
Confidence 358899999999 9999999999999 89999999999999 59999999999999999998754
No 107
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.47 E-value=1.9e-07 Score=85.27 Aligned_cols=62 Identities=21% Similarity=0.394 Sum_probs=57.3
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...+.+||+.++ |.+|...|..+|+ +.+.|..||++||+. +||++..||.||+.+|+.++..
T Consensus 15 ~~~V~~WL~~lg--L~qY~~~F~~~g~~~~~~l~~lt~~DL~~-lGI~~~GHrkkIl~ai~~L~~~ 77 (91)
T 1x40_A 15 NVDIKDFLMSIN--LEQYLLHFHESGFTTVKDCAAINDSLLQK-IGISPTGHRRRILKQLQIILSK 77 (91)
T ss_dssp CCBHHHHHHTTT--CGGGHHHHHHHTCCBSGGGGGCCHHHHHH-HTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHCC--CHHHHHHHHHcCCCcHHHHhhcCHHHHHH-CCCCCHhHHHHHHHHHHHHHhh
Confidence 457889999999 9999999999999 489999999999995 9999999999999999999865
No 108
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=98.47 E-value=1.3e-07 Score=84.18 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=59.9
Q ss_pred CCCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 577 ss~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...++..+.+||+.+| |.+|...|..++||+..|..||++||.. +||++.+||.+|+.+|+.++..
T Consensus 8 ~~Ws~~~V~~WL~~lg--l~~Y~~~F~~~~idg~~Ll~Lt~~dL~~-lGI~~~ghr~kIl~aI~~L~~~ 73 (81)
T 3bq7_A 8 HLWGTEEVAAWLEHLS--LCEYKDIFTRHDIRGSGLLHLERRDLKD-LGVTKVGHMKRILCGIKELSRS 73 (81)
T ss_dssp GGCCHHHHHHHHHHTT--CGGGHHHHHHTTCCHHHHTTCCHHHHHH-TTCCCHHHHHHHHHHHHHHHC-
T ss_pred hhCCHHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHCcCCHHHHhH-cCCCCHHHHHHHHHHHHHHHHH
Confidence 3456678899999998 9999999999999999999999999985 9999999999999999998754
No 109
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.7e-07 Score=86.58 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=58.1
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
..+.+||+.+| +.+|...|..+||| .+.|..||++||+. +||++.+||.+|+.+|+.++...
T Consensus 23 ~~V~~WL~~lg--L~~Y~~~F~~~~~~~~~~L~~lt~~DL~~-lGI~~~GhRkkIl~ai~~l~~~~ 85 (99)
T 2eao_A 23 TTVDDWLSAIK--MVQYRDSFLTAGFTSLQLVTQMTSEDLLR-IGITLAGHQKKILNSIHSMRVQI 85 (99)
T ss_dssp CBHHHHHHTTT--CGGGHHHHHHHTCCBHHHHTTCCHHHHHH-HTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCC--cHHHHHHHHHcCCChHHHHhhCCHHHHHH-CCCCChhHHHHHHHHHHHHHHHh
Confidence 58899999999 99999999999998 99999999999995 99999999999999999998653
No 110
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.46 E-value=1.4e-07 Score=89.39 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=81.1
Q ss_pred CCCCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCCh
Q psy4858 656 KNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKD 735 (979)
Q Consensus 656 ~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~Sd 735 (979)
+.|.|||||..+| ....|.+.|...||..- | +.|+.|+++|++.++.. ..++
T Consensus 3 ~~~~lFISh~~~d---~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t----------~~s~ 54 (111)
T 1eiw_A 3 AEIRLYITEGEVE---DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWG----------TRRD 54 (111)
T ss_dssp CCEEEEECCCCSH---HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTT----------TSHH
T ss_pred ceEEEEEecccHh---HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCc----------CCCh
Confidence 4789999999998 46677777764466433 3 66899999999999984 5579
Q ss_pred hHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHHHHHhhccc
Q psy4858 736 WVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLERFMRGELN 802 (979)
Q Consensus 736 WV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~g~l~ 802 (979)
||..||..|.+.||+||-|..+- .+++|..+...+. .-+.|+. +.|+++|.+..+
T Consensus 55 wv~~EI~~A~~~gkpIigV~~~g----~~~~P~~l~~~a~-~iV~Wn~-------~~I~~aI~~~~~ 109 (111)
T 1eiw_A 55 EILGAVDLARKSSKPIITVRPYG----LENVPPELEAVSS-EVVGWNP-------HCIRDALEDALD 109 (111)
T ss_dssp HHHHHHHHHTTTTCCEEEECCSS----SSCCCTTHHHHCS-EEECSCH-------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEEEEcCC----CCcCCHHHHhhCc-eeccCCH-------HHHHHHHHhccC
Confidence 99999999999999999994321 2468888887654 3577884 566777766543
No 111
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=1.5e-07 Score=83.71 Aligned_cols=63 Identities=29% Similarity=0.544 Sum_probs=56.8
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCc-hhh--hccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDK-DSI--KALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~-~~L--~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
+...+.+||+.+| |.+|...|..+|||. +.| ..||++||+ ++||++.+||.+|+.+|+.|+..
T Consensus 11 ~~~~V~~WL~~lg--L~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~-~lGI~~~ghR~kIl~ai~~L~~~ 76 (80)
T 2eam_A 11 PVQTVGQWLESIG--LPQYENHLMANGFDNVQFMGSNVMEDQDLL-EIGILNSGHRQRILQAIQLLPSG 76 (80)
T ss_dssp CCCCHHHHHHHHT--CGGGHHHHHHTTCCCTTTSSSSSSCTTHHH-HSSCCCHHHHHHHHHHHHHSCCC
T ss_pred ChhHHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHhcC
Confidence 4568999999999 999999999999975 567 799999999 59999999999999999998754
No 112
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=98.45 E-value=1.8e-07 Score=84.81 Aligned_cols=61 Identities=15% Similarity=0.330 Sum_probs=55.4
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCCC-chhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
...+.+||..+| +.+|...|..+||| .+.|..||++||. ++||++.+||.||+.+|+.++.
T Consensus 21 ~~~V~~WL~~lg--L~qY~~~F~~~g~d~le~l~~lt~~DL~-~LGIt~~GHRkkIL~ai~~Lr~ 82 (86)
T 3kka_C 21 FRTVSEWLESIK--MQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKRIAYSLLGLKD 82 (86)
T ss_dssp --CHHHHHHHTT--CGGGHHHHHHTTCCSHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHhCC--cHHHHHHHHHcCCChHHHHHhCCHHHHH-HCCCCCHHHHHHHHHHHHHHHH
Confidence 357899999999 99999999999998 8999999999999 5999999999999999998864
No 113
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=98.43 E-value=1.8e-07 Score=81.53 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=59.0
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.++..+.+||+.+| +.+|...|..++||++.|..||++||. ++||++.+||.+|+.+|+.|+..
T Consensus 7 Ws~~~V~~WL~~~g--l~~y~~~F~~~~i~g~~Ll~l~~~dL~-~lGI~~~g~r~kil~~i~~L~~~ 70 (74)
T 2gle_A 7 WSVQQVSHWLVGLS--LDQYVSEFSAQNISGEQLLQLDGNKLK-ALGMTSSQDRALVKKKLKEMKMS 70 (74)
T ss_dssp CCSGGGHHHHHHTT--THHHHHHHTTTTCCHHHHHTCCHHHHH-TTTCCCHHHHHHHHHHHHSHHHH
T ss_pred CCHHHHHHHHHHCC--CHHHHHHHHHcCCCHHHHhhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHH
Confidence 45678999999998 999999999999999999999999987 59999999999999999998753
No 114
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=86.44 Aligned_cols=64 Identities=20% Similarity=0.416 Sum_probs=58.0
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCC-chhhh--ccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIK--ALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD-~~~L~--~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.....+.+||+.|| +.+|...|..+||| .+.|. .||++||+ ++||++..||.+|+.+|+.|+..
T Consensus 27 ~~~~~V~eWL~~Lg--L~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~-eLGIt~~GHRkkIL~aI~~L~~~ 93 (101)
T 2lmr_A 27 TLEQSVGEWLESIG--LQQYESKLLLNGFDDVHFLGSNVMEEQDLR-DIGISDPQHRRKLLQAARSLPKV 93 (101)
T ss_dssp CSSCCHHHHHHHHT--CGGGHHHHHHTTCCCTTSTTTSCCCHHHHH-HHTCCCHHHHHHHHHHHHTSSSC
T ss_pred CCcccHHHHHHHCC--CHHHHHHHHHcCCChHHHHhhccCCHHHHH-HCCCCCHHHHHHHHHHHHHHHhc
Confidence 44568999999999 99999999999997 67888 89999999 59999999999999999998754
No 115
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=98.42 E-value=2e-07 Score=82.38 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=59.9
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.++..+.+||+.+++.+.+|...|..++||++.|..||.+||+ ++||++.+||.+|+.+|+.|+..
T Consensus 7 Ws~~~V~~WL~~l~~gl~~Y~~~F~~~~i~G~~Ll~L~~~dL~-~lGI~~~ghr~~il~~I~~L~~~ 72 (80)
T 3bs5_B 7 WSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQELILEAVDLLCAL 72 (80)
T ss_dssp CCHHHHHHHHHTSCGGGGGGHHHHHHHTCCHHHHHTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHHHHHHHHcCCCHHHHHHCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHh
Confidence 4566789999999655999999999999999999999999998 59999999999999999999754
No 116
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=98.39 E-value=3.8e-07 Score=80.44 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=56.5
Q ss_pred ccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 581 VTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 581 ~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...+.+||..+| +.+|...|..+++|.+.|..||++||+ ++||+ .+||.+|+.+|+.++..
T Consensus 2 ~~~v~~wL~~lg--L~~Y~~~F~~~~id~e~l~~lt~~DL~-~lGI~-~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 2 TSPLETFLASLH--MEDFAALLRQEKIDLEALMLCSDLDLR-SISVP-LGPREKILGAVRRRRQA 62 (74)
T ss_dssp CCHHHHHHHTTT--CGGGHHHHHHTTCCHHHHTTCCHHHHH-HTTCC-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHCC--CHHHHHHHHHcCcCHHHHhHCCHHHHH-HcCCC-cchHHHHHHHHHHHHHH
Confidence 356889999999 999999999999999999999999998 59999 99999999999988764
No 117
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3.4e-07 Score=81.65 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..++..+.+||+.++..+.+|...|..++||++.|..||.+||+ ++||++.+||.+|+.+|+.|+..
T Consensus 10 ~Wt~~~V~~WL~~l~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dL~-~LGI~~~ghr~~il~~I~~L~~~ 76 (83)
T 2ean_A 10 KWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQELILEAVDLLCAL 76 (83)
T ss_dssp GCCTTHHHHHHTTSCGGGTTTHHHHHHHTCCHHHHTTCCHHHHH-HHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHCCCCHHHHhhCCHHHHH-HhCCCCHHHHHHHHHHHHHHHHH
Confidence 45667889999998544899999999999999999999999998 59999999999999999999754
No 118
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=98.35 E-value=3.1e-07 Score=83.70 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 512 EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.+|..||+.+||..|.+.|.. ++=+.++.||++||+ ++||+..|||+||+.+|+.|+...
T Consensus 19 ~~V~~WL~sLrLhKY~~~F~~--~~~~~l~~LtdedL~-~~GVta~GaRrKil~aI~~lr~~~ 78 (88)
T 2d3d_A 19 KNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLE-KKGVLALGARRKLLKAFGIVIDYK 78 (88)
T ss_dssp TCHHHHHHHTTCGGGHHHHTT--SCHHHHTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcccchhHHHHhc--CCHHHHHHcCHHHHH-HcCCccHhHHHHHHHHHHHHHHHH
Confidence 489999999999999999975 577889999999998 799999999999999999998754
No 119
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=98.34 E-value=3.9e-07 Score=80.16 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=59.3
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.++..+.+||+.+++++++|...|..++||++.|..||.++|. ++||++.+||.+|+.+|+.|+..
T Consensus 6 Wt~~~V~~WL~~~~~gl~~y~~~F~~~~I~G~~Ll~L~~~dL~-~lGI~~~g~r~~il~~I~~Lr~~ 71 (78)
T 3bs7_A 6 WTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNRDREAIWREIVKQRLK 71 (78)
T ss_dssp CCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHCCCCHHHHhhCCHHHHh-HcCCCCHHHHHHHHHHHHHHHhH
Confidence 3556789999997444999999999999999999999999998 59999999999999999999764
No 120
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=4.7e-07 Score=82.10 Aligned_cols=63 Identities=14% Similarity=0.396 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHHHH-hcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHH
Q psy4858 505 QVPLWSTEDVREWVRQIGFAEYANNFV-ESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQN 569 (979)
Q Consensus 505 ~V~~WS~EDVa~WL~~IGL~eY~~~F~-en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~ 569 (979)
.|..|++++|+.||++.||.+ ++.|. ++.|||..||.|||+||++.+-+. ..-..||-++|+.
T Consensus 18 eV~~Wsp~~VadWLkk~g~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk~Pkl~-~p~~~k~~q~in~ 81 (90)
T 2eap_A 18 EVLGWDPDSLADYFKKLNYKD-CEKAVKKYHIDGARFLNLTENDIQKFPKLR-VPILSKLSQEINK 81 (90)
T ss_dssp HHTTCCTTTHHHHHHHTTCHH-HHHHHHHTTCCHHHHHTCCHHHHTTSCTTT-HHHHHHHHHHHHT
T ss_pred cccccCHHHHHHHHHHcCCch-HHHHHHHhccCchhhhcccHHHhccCCccc-cHHHHHHHHHHhc
Confidence 689999999999999999999 89987 899999999999999999644444 4455567777763
No 121
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.32 E-value=2.1e-05 Score=93.35 Aligned_cols=193 Identities=18% Similarity=0.245 Sum_probs=144.8
Q ss_pred hhHHHHHHHHH-HhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhh--chhHHHhhhhhccccccccc
Q psy4858 199 HEIGYSLCNTL-RNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVEN--GLDKVVRVACVCTKNINSVE 272 (979)
Q Consensus 199 ~~~~~~lc~~i-r~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~--Gl~~lv~la~~~tk~~~~~~ 272 (979)
.+++.-++|.+ .+.+++.+|+.++.+.+-.++++|.+||+.++.. .+++.|... |+..||.+. +... +
T Consensus 107 ~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL----~d~r--E 180 (651)
T 3grl_A 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL----ADSR--E 180 (651)
T ss_dssp -CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG----GCSS--H
T ss_pred hHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH----hCch--H
Confidence 46677777766 5689999999999999999999999999999743 489999976 599999999 4323 6
Q ss_pred hhhh-hhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCCh----hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchh
Q psy4858 273 HSRV-GTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDI----ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWL 347 (979)
Q Consensus 273 ~~r~-~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~----~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL 347 (979)
.-|+ +.++|-+|=+|+.+..+-++-+||++.|+..++..-. .+..-|...|.||+-+ .+.||..+.|.+++..|
T Consensus 181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~-N~sNQ~~FrEt~~i~~L 259 (651)
T 3grl_A 181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN-NNSNQNFFKEGSYIQRM 259 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCGGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc-CHHHHHHHHHcCCHHHH
Confidence 6666 7789999955555555555555999999999998644 8999999999999877 46799999999999999
Q ss_pred ccccccCCcc--------chhhHHH-HHHHHhcc-------hHHHHHHHhhhhHHHHHhhCCccchHhhhhc-CChh
Q psy4858 348 FPLAFHNDDN--------IKYYACL-AIAVLVAN-------TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMS-HSPS 407 (979)
Q Consensus 348 ~~La~s~dd~--------vr~~A~l-Ala~Lasn-------~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~-~~P~ 407 (979)
.+|....++. .-.++.+ .++.|++. ..-|.+ +.++|.+..+-.++.+ ..|.
T Consensus 260 ~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~---------~~~~g~l~~Ll~ll~~~~~p~ 327 (651)
T 3grl_A 260 KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKA---------MFQCGLLQQLCTILMATGVPA 327 (651)
T ss_dssp GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH---------HHHTTHHHHHHHHHTCSSCCH
T ss_pred HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH---------HHHCCCHHHHHHHHccCCCCH
Confidence 9998755442 1112223 34556554 234555 8899998655445544 3353
No 122
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.31 E-value=4e-06 Score=83.25 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=130.7
Q ss_pred hhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccc
Q psy4858 191 AWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINS 270 (979)
Q Consensus 191 Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~ 270 (979)
||.-|.+.. ..+....+.+.++.|++.+.+++..++..|+..|.++-. ...+..|+++. +. .+
T Consensus 1 ~w~~~~~~~----~~~~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l----~~-~~ 63 (211)
T 3ltm_A 1 AWSHPQFEK----AAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKAL----KD-ED 63 (211)
T ss_dssp -------------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHT----TC-SC
T ss_pred CCcccccch----hhhHhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHH----cC-CC
Confidence 788887733 334456778899999999999999999999999998753 23477888877 33 45
Q ss_pred cchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccc
Q psy4858 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL 350 (979)
Q Consensus 271 ~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~L 350 (979)
..+.+.+..+|..+ . ..++++.|+.++...|+.+...|+.+|.++.- +.++..|..+
T Consensus 64 ~~vr~~a~~aL~~~-~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~ 120 (211)
T 3ltm_A 64 AWVRRAAADALGQI-G----------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKA 120 (211)
T ss_dssp HHHHHHHHHHHHHH-C----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHH
T ss_pred HHHHHHHHHHHHhh-C----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHH
Confidence 67777777777776 2 24678899999999999999999999999831 3456778888
Q ss_pred cccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhh
Q psy4858 351 AFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVP 430 (979)
Q Consensus 351 a~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~Lvp 430 (979)
..+.++.||..|+.||+.+.... .- +.+..++...+|..-.........-.+...++.|..
T Consensus 121 l~d~~~~vr~~a~~aL~~~~~~~-~~------------------~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~ 181 (211)
T 3ltm_A 121 LKDEDWFVRIAAAFALGEIGDER-AV------------------EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEK 181 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGG-GH------------------HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCHH-HH------------------HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 88888899999999999985432 21 223334444334321111111111124567788888
Q ss_pred ccccchHHHHHHHHHHhh
Q psy4858 431 VLSSKREEARNLAAFHFC 448 (979)
Q Consensus 431 lL~s~~eE~q~lAafhl~ 448 (979)
+|.....+.|..|+-.+.
T Consensus 182 ~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 182 LAETGTGFARKVAVNYLE 199 (211)
T ss_dssp HHHHCCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH
Confidence 888777777777776664
No 123
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.29 E-value=2.8e-06 Score=100.74 Aligned_cols=240 Identities=14% Similarity=0.123 Sum_probs=179.2
Q ss_pred hhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh---------------
Q psy4858 227 LDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT--------------- 291 (979)
Q Consensus 227 ~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t--------------- 291 (979)
.+=+-.|..-|-.+. -+-|..|...||..++.+..+ ...|+|.-+..+.+|.++|...++.
T Consensus 36 ~eDRR~Av~~Lk~~s-k~y~~~Vg~~~l~~li~~L~~---d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (651)
T 3grl_A 36 LDDRRNAVRALKSLS-KKYRLEVGIQAMEHLIHVLQT---DRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS 111 (651)
T ss_dssp HHHHHHHHHHHHHTT-TTTTTHHHHHTHHHHHHHHHS---CTTCHHHHHHHHHHHHHHHCCC--------------CHHH
T ss_pred hhHHHHHHHHHHHHH-HHhHHHhhhhhHHHHHHHHhc---ccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHH
Confidence 356677767777665 577888999999999999853 3478899999999999998765532
Q ss_pred --HHHH-hhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHH-hcCCcchhccccccCCccchhhHHHHHH
Q psy4858 292 --CSDV-IGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMI-KRKVPVWLFPLAFHNDDNIKYYACLAIA 367 (979)
Q Consensus 292 --~~~l-V~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi-~~~~~~wL~~La~s~dd~vr~~A~lAla 367 (979)
...+ -+.+++..|+.++.+.|-.+..++...|..|......+.|+.+. .++++.-|+.+.....+.+|..|.+.|+
T Consensus 112 ~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~ 191 (651)
T 3grl_A 112 QFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQ 191 (651)
T ss_dssp HHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHH
Confidence 1122 36789999999999999999999999999999999888999997 7899999999999888999999999999
Q ss_pred HHhcc-hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh--------------hhhhhhhhc-ccCCCchhhhhhhhc
Q psy4858 368 VLVAN-TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS--------------EFAKSNLAH-AHGQNRNWLQKLVPV 431 (979)
Q Consensus 368 ~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~--------------~fAr~~l~~-~~g~~~g~L~~Lvpl 431 (979)
.|+.+ +++|.. |.-.|+.+.+-.+++..-+. .+++.|... ..=++.+++++|+||
T Consensus 192 ~Lt~~n~~iQkl---------VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 192 ALTRSNGAIQKI---------VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHTTCHHHHHH---------HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGG
T ss_pred HHhcCCHHHHHH---------HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHH
Confidence 99987 999999 88888888777777665542 122222110 112466799999999
Q ss_pred cccchH-------HHHHHHHHHhhHHhhhhh------hcCCchhhhhhCccchhhhhhcCC
Q psy4858 432 LSSKRE-------EARNLAAFHFCMEAGIKK------QQGKTDIFKEIGAIEPLKKVASCP 479 (979)
Q Consensus 432 L~s~~e-------E~q~lAafhl~~ea~iKk------~q~n~~~F~eiGaIe~LkrLasSp 479 (979)
|..+.+ +..++-..-.+.....-+ ...|-..|.+.|++++|.+++.++
T Consensus 263 L~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 263 FEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp GCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred hCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 987432 334432222222232222 223557889999999999998853
No 124
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=6.1e-07 Score=85.83 Aligned_cols=61 Identities=16% Similarity=0.321 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
-++|..||+.+||..|++.| ..++-+.|+.|+++||+ ++||...|+|+||+.+|+.|+...
T Consensus 49 ~~dV~~WL~sLrL~KY~~~F--~~~~~d~l~~LTeeDL~-~lGVta~GaRrKlL~AI~~Lr~~k 109 (119)
T 2b6g_A 49 LKNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLE-KKGVLALGARRKLLKAFGIVIDYK 109 (119)
T ss_dssp HHCHHHHHHHHTCHHHHHHH--TTSCHHHHTTCCHHHHH-HHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHCCChhHHHHH--ccCCHHHHHhcCHHHHH-HCCCCccccHHHHHHHHHHHHhhh
Confidence 46889999999999999999 45788999999999998 799999999999999999998754
No 125
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=98.27 E-value=5.5e-07 Score=81.97 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=60.6
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHH-HHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLI-CECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~-~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..++..+.+||+.+|..+.+|...|..+.||++.|..||++||+ .++||++.+||.+|+.+|+.|+..
T Consensus 19 ~Wt~~dV~~WL~~~gl~~~~Y~~~F~~~~IdG~~Ll~Lt~~dL~~~~LGI~~~g~r~~il~~I~~Lr~~ 87 (91)
T 1v85_A 19 KWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIENSSHRRVILTELERVRSG 87 (91)
T ss_dssp GCCHHHHHHHHHHHCGGGHHHHHHHHHTTCCHHHHHHCCHHHHHSTTTCCCCHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHhcCCHHHHhccCCCCCCHHHHHHHHHHHHHHHhc
Confidence 45667889999999922299999999999999999999999999 579999999999999999999864
No 126
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=98.24 E-value=7.9e-07 Score=83.36 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=61.3
Q ss_pred CCCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 577 ss~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...++..+.+||..++|.+.+|...|..++||++.|..||.++|+ ++||++.+||.+|+.+|+.|+..
T Consensus 24 ~~Wt~~~V~~WL~~~~~gl~~Y~~~F~~~~I~G~~Ll~Lt~~dLk-~LGI~~~GhR~kIl~~I~~Lr~~ 91 (106)
T 3bs5_A 24 YLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNRDREAIWREIVKQRLK 91 (106)
T ss_dssp GGCCHHHHHHHHHHHSGGGGGGHHHHHHTTCCHHHHTTCCHHHHH-HHTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHcchHHHHHHHHHcCccHHHHhhCCHHHHH-hcCCCCHHHHHHHHHHHHHHHHH
Confidence 345677889999999555999999999999999999999999998 59999999999999999999754
No 127
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A
Probab=98.24 E-value=9.6e-07 Score=79.71 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=56.1
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCCc-hhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD~-~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||..++ +.||...|+++|+++ +.|..|..++|++ +||++.+||.||+.+|+.++..
T Consensus 16 ~~v~~wL~si~--c~qY~~~F~eN~I~g~d~L~eLd~e~LkE-lGI~kvGdRirIlk~vk~Lr~~ 77 (85)
T 1ow5_A 16 PFVQLFLEEIG--CTQYLDSFIQCNLVTEEEIKYLDKDILIA-LGVNKIGDRLKILRKSKSFQRD 77 (85)
T ss_dssp CHHHHHHHHHS--CTHHHHHHHHHTCCCHHHHHHCCHHHHHH-HTCCCHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHcC--ChhHHHHHHHcCCCcHHHHHHcCHHHHHH-hCCCcccHHHHHHHHHHHHHHH
Confidence 37889999998 999999999999999 9999999999994 9999999999999999998865
No 128
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=98.21 E-value=6.8e-07 Score=83.13 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 512 EDVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.+|..||+.+||..|.+.|.. ++=+.++.||++||. ++||+..|+|+||+.+|+.|+...
T Consensus 32 ~dV~~WLksLrLhKY~~~F~~--~~~~~l~~LTdedL~-~~GVta~GARrKiL~aI~~Lr~~k 91 (101)
T 2es6_A 32 KNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETLE-KKGVLALGARRKLLKAFGIVIDYK 91 (101)
T ss_dssp TCHHHHHHTTTCCCTHHHHTT--SCHHHHTTCCHHHHH-HHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHccCcchHHHHcc--CCHHHHHhcCHHHHH-HcCCccHhHHHHHHHHHHHHHHHH
Confidence 489999999999999999966 566889999999998 799999999999999999998754
No 129
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=2.4e-06 Score=79.47 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=58.1
Q ss_pred CCccChHHHhhhcCCCcch--hHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSI--YTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~q--Ytys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.++..+.+||+.+| |.+ |...|..++||++.|..||+++|+ ++||++.+||.+|+.+|+.|+..
T Consensus 30 Ws~~~V~~WL~~lg--l~~~~y~~~F~~~~I~G~~Ll~Lt~~dLk-eLGI~~~G~R~kil~~I~~Lr~~ 95 (103)
T 2e8o_A 30 WGPEQVCSFLRRGG--FEEPVLLKNIRENEITGALLPCLDESRFE-NLGVSSLGERKKLLSYIQRLVQI 95 (103)
T ss_dssp CHHHHHHHHHHHHT--CCCHHHHHHHHHTTCCTTTTTTCCHHHHH-HTTCCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcC--CChHHHHHHHHHcCCCHHHHHhCCHHHHH-HcCCCCHHHHHHHHHHHHHHHHh
Confidence 44567789999998 888 999999999999999999999998 59999999999999999999754
No 130
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=98.07 E-value=3.2e-06 Score=73.92 Aligned_cols=62 Identities=8% Similarity=0.233 Sum_probs=55.0
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhccc
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADY 576 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~y 576 (979)
.|.+||..+++++|.++|..+++. =..+..|+.+||. .+||+. +|+|||+..|..|+...+|
T Consensus 6 sv~~WLd~i~m~~Y~d~F~~~g~~s~~~v~~lt~eDL~-~~GIt~-ghqkkIl~siq~lr~~~~~ 68 (69)
T 2y9u_A 6 SIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLA-SLKIPE-QFRHAIWKGILDHRQLHEF 68 (69)
T ss_dssp BHHHHHHTTTCGGGHHHHHTTTCCBHHHHTTCCHHHHH-HTTCCH-HHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHcCChHHHHHHHHcCCCcHHHHHHcCHHHHH-hcCCCh-hhHHHHHHhHHHHHhcccc
Confidence 488999999999999999977754 5678899999998 799997 9999999999999987654
No 131
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=98.02 E-value=1.6e-06 Score=79.39 Aligned_cols=66 Identities=11% Similarity=0.169 Sum_probs=58.0
Q ss_pred CCCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 577 ss~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
...++..+.+||+.++..+.+| .|..++|+++.|..||.+||+ ++||++.+||.+|+.+|+.|+..
T Consensus 12 ~~Wt~~~V~~WL~~l~~~l~~Y--~F~~~~I~G~~LL~Lt~~dL~-~LGI~~~Ghr~~Il~~I~~L~~~ 77 (91)
T 1wwv_A 12 ETWTPGKVATWLRGLDDSLQDY--PFEDWQLPGKNLLQLCPQSLE-ALAVRSLGHQELILGGVEQLQAL 77 (91)
T ss_dssp TTCCTTTHHHHHHHHCHHHHTS--CHHHHCCCHHHHTTCCTTTGG-GGTCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCccccc--cHHhcCccHHHHhhCCHHHHH-HcCCCcHhHHHHHHHHHHHHHHH
Confidence 3457788999999774448888 688999999999999999998 59999999999999999999754
No 132
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=98.01 E-value=5.6e-06 Score=74.65 Aligned_cols=63 Identities=10% Similarity=0.241 Sum_probs=56.3
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCC-hhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcccC
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYS 577 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~ID-G~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ys 577 (979)
.|.+||+.+|+++|.++|..+++. =..+..|+.+||. .+||+. +|+|||+..|..|+...+|+
T Consensus 8 SV~~WLd~i~m~~Y~d~F~~~G~~sl~~V~~lt~eDL~-~mGIt~-gHqkkIl~siq~lr~~~~~~ 71 (82)
T 2y9t_A 8 SIVSFLARLGCSSCLDYFTTQGLTTIYQIEHYSMDDLA-SLKIPE-QFRHAIWKGILDHRQLHEFS 71 (82)
T ss_dssp BHHHHHHHHTCGGGHHHHHTTTCCBSGGGTTCCHHHHH-HTTCCH-HHHHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHcCchHHHHHHHHcCCCcHHHHHhcCHHHHH-hcCCCh-hhHHHHHhhHHHHHHHhccc
Confidence 589999999999999999877754 5678899999998 799997 99999999999999988764
No 133
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=97.98 E-value=9.2e-06 Score=71.01 Aligned_cols=60 Identities=22% Similarity=0.220 Sum_probs=56.2
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+.+||+.|+ +.+|...|..+|+ ..+.|..||.+||.. +||+. .||.+|+.+|+.++..
T Consensus 5 ~sv~~WLd~i~--m~~Y~d~F~~~g~~s~~~v~~lt~eDL~~-~GIt~-ghqkkIl~siq~lr~~ 65 (69)
T 2y9u_A 5 CSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLAS-LKIPE-QFRHAIWKGILDHRQL 65 (69)
T ss_dssp CBHHHHHHTTT--CGGGHHHHHTTTCCBHHHHTTCCHHHHHH-TTCCH-HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHcC--ChHHHHHHHHcCCCcHHHHHHcCHHHHHh-cCCCh-hhHHHHHHhHHHHHhc
Confidence 48899999999 9999999999999 699999999999996 99999 9999999999998764
No 134
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=97.89 E-value=9.7e-06 Score=73.83 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=57.4
Q ss_pred CCCccChHHHhhhc-CCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 578 SKDVTNLNNFLLNL-GQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 578 s~d~~~l~ewL~~I-Gpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
..+...+.+||..+ | |.+|...|..+.|||+.|..||++||..++|| +.+||.+|+.+|+.++..
T Consensus 16 ~Ws~edV~~wL~~l~g--l~~y~~~F~~~~IdG~~LL~Lt~~dL~k~lgI-klG~r~kI~~~I~~L~~~ 81 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPG--CQDYVDDFIQQEIDGQALLRLKEKHLVNAMGM-KLGPALKIVAKVESIKEV 81 (89)
T ss_dssp GCCHHHHHHHHHTSTT--CGGGHHHHHHTTCCHHHHHHCCHHHHHTTTCC-CHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHCcC--hHHHHHHHHHhCccHHHHhcCCHHHHHHHcCC-CHHHHHHHHHHHHHHHHH
Confidence 34556778999998 6 99999999999999999999999999778999 799999999999998754
No 135
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=97.87 E-value=1.2e-05 Score=74.57 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=58.1
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHH-HcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLIC-ECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~-~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
..++..+..||..+| |.+|...| .+ ||++.|..||++||+. .+||.+.+||++|+.+|+.|+...
T Consensus 19 ~Ws~edV~~WL~~~G--l~~Y~~~F-~~-IdG~~LL~Lt~~dLk~~~LgI~~~g~rkkl~~~I~~L~~~~ 84 (97)
T 2d8c_A 19 YWSPKKVADWLLENA--MPEYCEPL-EH-FTGQDLINLTQEDFKKPPLYRVSSDNGQRLLDMIETLKMEH 84 (97)
T ss_dssp SCCTTHHHHHHHHTT--CTTTTTTT-TT-CCHHHHHTCCHHHHHSSSSSSCSTTTTHHHHHHHHHHHHHS
T ss_pred hCCHHHHHHHHHHcC--CHHHHHHH-Hc-CCCHHHhcCCHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 456678899999998 99999888 67 9999999999999996 599999999999999999997653
No 136
>2y9t_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle; NMR {Homo sapiens}
Probab=97.86 E-value=2.3e-05 Score=70.66 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=57.0
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
..+.+||+.|+ +.+|...|..+|+ ..+.|..||.+||.. +||+. .||.+|+.+|+.++...
T Consensus 7 ~SV~~WLd~i~--m~~Y~d~F~~~G~~sl~~V~~lt~eDL~~-mGIt~-gHqkkIl~siq~lr~~~ 68 (82)
T 2y9t_A 7 CSIVSFLARLG--CSSCLDYFTTQGLTTIYQIEHYSMDDLAS-LKIPE-QFRHAIWKGILDHRQLH 68 (82)
T ss_dssp SBHHHHHHHHT--CGGGHHHHHTTTCCBSGGGTTCCHHHHHH-TTCCH-HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcC--chHHHHHHHHcCCCcHHHHHhcCHHHHHh-cCCCh-hhHHHHHhhHHHHHHHh
Confidence 48899999999 9999999999999 799999999999996 99998 99999999999998654
No 137
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.82 E-value=3.3e-05 Score=91.93 Aligned_cols=171 Identities=14% Similarity=0.142 Sum_probs=127.1
Q ss_pred CChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcC-h
Q psy4858 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS-E 289 (979)
Q Consensus 213 Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS-e 289 (979)
..+-||++.+++++.+.|..|+..|.++..+ ++|..+.+.| +.+++.-.- ++ .+.++...+.|+|.||--+. .
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL--~D--~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETL--TD--NNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTT--TC--SCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHc--CC--CCHHHHHHHHHHHHHHHhhcCc
Confidence 3677899999999999999999999999864 8999999998 667655331 13 34688899999999995554 5
Q ss_pred hhHHHHhhcCchHHHHhhhccCCh---------------------hHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhc
Q psy4858 290 GTCSDVIGLGGLDTVLFECRKNDI---------------------ETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLF 348 (979)
Q Consensus 290 ~t~~~lV~~Ggl~~Ll~l~r~~d~---------------------~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~ 348 (979)
+.|..+++.|.+++|+.++++.+. ++...+..+|.||+-.. ......+.+.+.+.-|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s-~~~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR-DEIHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHhcccHHHHH
Confidence 899999999999999999976322 23345566777776543 33445666777777777
Q ss_pred cccccCCc---cchhhHHHHHHHHhcc-hHHHHHHHhhhhHHHHHhhCCccch
Q psy4858 349 PLAFHNDD---NIKYYACLAIAVLVAN-TEIEAAVLKSVQEAAVLKSGTLDLV 397 (979)
Q Consensus 349 ~La~s~dd---~vr~~A~lAla~Lasn-~ei~~~~~~~~~~~~V~~sG~l~lv 397 (979)
.+..+.+. .++..|+-+|.+|+.| .++-.. |..+|...+.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~---------i~~~~~~~~~ 232 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQA---------ITDDQETHVY 232 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHH---------HHTCCSSCHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHH---------HHhcchHHHH
Confidence 76654443 6888898999999997 555555 6667665443
No 138
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.78 E-value=0.00024 Score=73.50 Aligned_cols=226 Identities=15% Similarity=0.102 Sum_probs=142.4
Q ss_pred HHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 209 ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
+...+.++.|+..+..++..++..|+..|.++-. ...+..|+++. +. .+..+.+.+..+|..+ ...
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l----~d-~~~~vR~~A~~aL~~l-~~~ 84 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFC----SD-KNYIRRDIGAFILGQI-KIC 84 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHH----TC-SSHHHHHHHHHHHHHS-CCC
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHH----cC-CCHHHHHHHHHHHHHh-ccc
Confidence 4567889999999999999999999999998752 11266777776 33 3456777777888887 443
Q ss_pred hhhHHHHhhcCchHHHH-hhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHH
Q psy4858 289 EGTCSDVIGLGGLDTVL-FECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIA 367 (979)
Q Consensus 289 e~t~~~lV~~Ggl~~Ll-~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla 367 (979)
++....++ +.|. .++...|+.+.+.|+.||.++.-.... ..+.++..|..+..+.++.||..|+.||+
T Consensus 85 ~~~~~~l~-----~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~ 153 (280)
T 1oyz_A 85 KKCEDNVF-----NILNNMALNDKSACVRATAIESTAQRCKKNPI------YSPKIVEQSQITAFDKSTNVRRATAFAIS 153 (280)
T ss_dssp TTTHHHHH-----HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred cccchHHH-----HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc------ccHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33322222 2333 245667899999999999998532211 11234567777888888899999999988
Q ss_pred HHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-----hhhhhhhhcccCCCchhhhhhhhccccchHHHHHH
Q psy4858 368 VLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-----EFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNL 442 (979)
Q Consensus 368 ~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-----~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~l 442 (979)
.+.... .++.+..++...+|. ..|.... ...+...++.|+.+|.....+.|..
T Consensus 154 ~~~~~~-------------------~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~~~~~~~~~L~~~l~d~~~~vR~~ 211 (280)
T 1oyz_A 154 VINDKA-------------------TIPLLINLLKDPNGDVRNWAAFAININ---KYDNSDIRDCFVEMLQDKNEEVRIE 211 (280)
T ss_dssp TC---C-------------------CHHHHHHHHTCSSHHHHHHHHHHHHHH---TCCCHHHHHHHHHHTTCSCHHHHHH
T ss_pred hcCCHH-------------------HHHHHHHHHcCCCHHHHHHHHHHHHhh---ccCcHHHHHHHHHHhcCCCHHHHHH
Confidence 765422 123334444444443 1122211 1125678899999998888888888
Q ss_pred HHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccC
Q psy4858 443 AAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGE 496 (979)
Q Consensus 443 Aafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gE 496 (979)
|+..+.. . + ...+++.|.++...++ ...-+..||..+|.
T Consensus 212 A~~aL~~-~------~------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 212 AIIGLSY-R------K------DKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHH-T------T------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHHHHHH-h------C------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 8777631 2 1 2245566665554432 33446667776664
No 139
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=97.73 E-value=7.6e-06 Score=82.47 Aligned_cols=58 Identities=17% Similarity=0.398 Sum_probs=51.9
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+|..||+++||..|.+.|... +=+.++.||++||. .+||+ .|+|+||+.+|+.|+...
T Consensus 9 dV~~WLksLrLhKY~~~F~~~--~~e~~~~LTdedL~-~~GVT-~GARrKIL~aIq~Lrer~ 66 (173)
T 1oxj_A 9 GIGLWLKSLRLHKYIELFKNM--TYEEMLLITEDFLQ-SVGVT-KGASHKLALCIDKLKERA 66 (173)
T ss_dssp THHHHHHHTTCGGGGGGGTTC--CHHHHTTCCHHHHH-HTTCC-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcccchhHHHHccC--CHHHHHhcCHHHHH-HCCCc-hHHHHHHHHHHHHHHHHh
Confidence 899999999999999999764 55588999999998 69999 599999999999998653
No 140
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.71 E-value=0.00023 Score=70.00 Aligned_cols=181 Identities=10% Similarity=0.050 Sum_probs=109.9
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT 291 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t 291 (979)
.++.+.+|+.+.+++..++..|+..|.++-.. ..+..|+++. +. .+..+.+.+..+|..+ .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--------~~~~~L~~~l----~~-~~~~vr~~a~~~L~~~-~----- 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--------RAVEPLIKAL----KD-EDAWVRRAAADALGQI-G----- 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------GGHHHHHHHT----TC-SSHHHHHHHHHHHHHH-C-----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHH----cC-CCHHHHHHHHHHHHhh-C-----
Confidence 35677888888888888888888888876421 2366677666 22 3456666666666655 2
Q ss_pred HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 292 CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
...+++.|+..+...|+.+.+.|+.+|.++.- +.+...|..++.+.++.||..|+.||+.+..
T Consensus 74 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 74 -----DERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred -----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 23567788888888888888888888888721 2345566667777777888888888887754
Q ss_pred chHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHHHHh
Q psy4858 372 NTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHF 447 (979)
Q Consensus 372 n~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAafhl 447 (979)
..-+ +.+..++...+|..-.........-.+...++.|..+|.....+.+..|+..+
T Consensus 137 ~~~~-------------------~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 137 ERAV-------------------EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp GGGH-------------------HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHH-------------------HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3211 22223333323321110000000112445667777777666666666655554
No 141
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.50 E-value=0.0013 Score=64.49 Aligned_cols=123 Identities=13% Similarity=0.081 Sum_probs=98.7
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT 291 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t 291 (979)
.+.++.|++.+..++..++..|+..|..+-.. ..+..|+++. +. .+..+.+.+..+|..+ ..
T Consensus 44 ~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l----~d-~~~~vr~~a~~aL~~~-~~---- 105 (201)
T 3ltj_A 44 ERAVEPLIKALKDEDAWVRRAAADALGQIGDE--------RAVEPLIKAL----KD-EDGWVRQSAAVALGQI-GD---- 105 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GGHHHHHHHT----TC-SSHHHHHHHHHHHHHH-CC----
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------HHHHHHHHHH----cC-CCHHHHHHHHHHHHHh-Cc----
Confidence 46689999999999999999999999887532 2367777776 33 4567888877777776 22
Q ss_pred HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHh
Q psy4858 292 CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV 370 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~La 370 (979)
..+++.|+..+...|+.+...|+.||.++. .+.+..+|..+..+.+..||..|+.||+.+.
T Consensus 106 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 106 ------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------------DERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 357889999999999999999999999983 1345778888888888899999999999984
No 142
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=97.50 E-value=0.00014 Score=66.27 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=52.3
Q ss_pred ChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 583 NLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 583 ~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
++.+||..++ |+.|+..|.. ++-+.+..||++||.. .||+..+||.+|+.+|+.++..
T Consensus 20 ~V~~WL~sLr--LhKY~~~F~~--~~~~~l~~LtdedL~~-~GVta~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 20 NIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEK-KGVLALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp CHHHHHHHTT--CGGGHHHHTT--SCHHHHTTCCHHHHHH-TTCCCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcc--cchhHHHHhc--CCHHHHHHcCHHHHHH-cCCccHhHHHHHHHHHHHHHHH
Confidence 6789999999 9999999954 6778899999999995 9999999999999999988754
No 143
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=97.33 E-value=0.00019 Score=65.49 Aligned_cols=66 Identities=9% Similarity=0.196 Sum_probs=57.9
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
.+...+.+||..+.+++.+|...|..+.|||+.|..||++||+..+|| +.+++++|..+|+.++..
T Consensus 17 WsvedV~~wl~~~~~g~~~y~~~F~~~eIDG~aLL~Lt~~dl~~~mgi-klGpalKi~~~I~~lk~~ 82 (89)
T 1pk1_B 17 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGL-KLGPALKICNLVNKVNGR 82 (89)
T ss_dssp CCHHHHHHHHHHHCGGGGGGHHHHHHTTCCHHHHHTCCHHHHHHHSCC-CHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHccchHHHHHHHHHcCcChHHHhcCCHHHHHHccCC-CccHHHHHHHHHHHHHcc
Confidence 455677899999966699999999999999999999999999888999 589999999999998754
No 144
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha motif, hydro regulator; 2.40A {Escherichia coli}
Probab=97.28 E-value=0.0001 Score=67.82 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=55.8
Q ss_pred ccCcCCCCCCCCCHHHHHHHHHHcCchHHH---HHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYA---NNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 498 vp~kl~~~V~~WS~EDVa~WL~~IGL~eY~---~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
.|..+..++..||.++|..||.-.+ .+|. ..|..+.+||..|+.|+.+|+....|. .|+ .|...|+.|+...
T Consensus 4 ~p~~l~~DP~~WS~~~V~~WL~w~~-~ef~L~~i~~~~f~mdGk~Lc~Lt~edF~~~~p~--~Gd--iL~~hL~~Lk~~~ 78 (93)
T 2qar_B 4 LPAHLRLQPIYWSRDDVAQWLKWAE-NEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPH--SGD--VLYELLQHILKQR 78 (93)
T ss_dssp CCGGGCSCGGGCCHHHHHHHHHHHH-HHTTCCCCCGGGGCSCHHHHTTCCHHHHHHHCTT--THH--HHHHHHHHHHHHH
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHH-HhcCCCCcchhcCCCCHHHHHcCCHHHHhhhCCc--chH--HHHHHHHHHHHhc
Confidence 3555667899999999999998776 6665 235567899999999999999754554 354 3888898888654
No 145
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=97.27 E-value=0.00032 Score=65.39 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=52.2
Q ss_pred ChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 583 NLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 583 ~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
++.+||..++ |..|+..|.. ++-+.+..||++||.. .||+..+||.+|+.+|+.++..
T Consensus 33 dV~~WLksLr--LhKY~~~F~~--~~~~~l~~LTdedL~~-~GVta~GARrKiL~aI~~Lr~~ 90 (101)
T 2es6_A 33 NIPMWLKSLR--LHKYSDALSG--TPWIELIYLDDETLEK-KGVLALGARRKLLKAFGIVIDY 90 (101)
T ss_dssp CHHHHHHTTT--CCCTHHHHTT--SCHHHHTTCCHHHHHH-HTCCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcc--CcchHHHHcc--CCHHHHHhcCHHHHHH-cCCccHhHHHHHHHHHHHHHHH
Confidence 6789999999 9999999955 5778899999999996 9999999999999999988754
No 146
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00029 Score=67.53 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=51.8
Q ss_pred ChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 583 NLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 583 ~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
++.+||+.++ |..|...| ..++.+.+..||++||+. +||+..+||.+|+.||+.++..
T Consensus 51 dV~~WL~sLr--L~KY~~~F--~~~~~d~l~~LTeeDL~~-lGVta~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 51 NIPMWLKSLR--LHKYSDAL--SGTPWIELIYLDDETLEK-KGVLALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp CHHHHHHHHT--CHHHHHHH--TTSCHHHHTTCCHHHHHH-HSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCC--ChhHHHHH--ccCCHHHHHhcCHHHHHH-CCCCccccHHHHHHHHHHHHhh
Confidence 5678999999 99999999 456888899999999995 9999999999999999988754
No 147
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.22 E-value=0.0018 Score=64.09 Aligned_cols=124 Identities=14% Similarity=0.090 Sum_probs=98.9
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGT 291 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t 291 (979)
.++++.|++.+..++..++..|+..|.++-. ...+..|+++. +. .+..+.+.+..+|..+ .
T Consensus 49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l----~~-~~~~vr~~a~~aL~~~-~----- 109 (211)
T 3ltm_A 49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIKAL----KD-EDGWVRQSAAVALGQI-G----- 109 (211)
T ss_dssp GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHT----TC-SSHHHHHHHHHHHHHH-C-----
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHH----cC-CCHHHHHHHHHHHHHh-C-----
Confidence 4679999999999999999999999998752 12367777776 33 4557777777777776 2
Q ss_pred HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 292 CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 292 ~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
..+.++.|+.++...|+.+...|+.||.++. . +.+...|..+..+.++.||..|+.||+.+..
T Consensus 110 -----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 110 -----DERAVEPLIKALKDEDWFVRIAAAFALGEIG---D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp -----CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred -----cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 2357889999999999999999999999982 1 2356778888888888999999999999864
No 148
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=97.22 E-value=0.0061 Score=62.89 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=96.7
Q ss_pred cCChHHHHHhhcCCChhHHhHHHHHHHHhhcc-chhhHHHhhchhHHHhhhhh-ccccccccchhhhhhhHhhhhhhcCh
Q psy4858 212 CGGMDLLISNCVEKDLDLQFSSARLLEQCLTT-ENRDHVVENGLDKVVRVACV-CTKNINSVEHSRVGTGILEHLFKHSE 289 (979)
Q Consensus 212 ~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~Gl~~lv~la~~-~tk~~~~~~~~r~~~giL~~lfkHSe 289 (979)
.+.++.|++.+.+++..++..|+.+|.++-.. +. +..++.+... +.+. .+..+.+.+..+|.++-.+..
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~--------~~~l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~ 123 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC--------EDNVFNILNNMALND-KSACVRATAIESTAQRCKKNP 123 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT--------HHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc--------chHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCC
Confidence 34678999999999999999999999998532 21 2223332210 1122 445777888888888843332
Q ss_pred hhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 290 GTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 290 ~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
.... ..++.|+.++...|+.+.+.|+.||.++.- +.++..|..++.+.+..||..|+.||+.+
T Consensus 124 ~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 124 IYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND------------KATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp GGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 2222 346789999999999999999999999831 34677888888888889999999999998
Q ss_pred hcc
Q psy4858 370 VAN 372 (979)
Q Consensus 370 asn 372 (979)
..+
T Consensus 187 ~~~ 189 (280)
T 1oyz_A 187 KYD 189 (280)
T ss_dssp TCC
T ss_pred ccC
Confidence 643
No 149
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.19 E-value=0.00047 Score=82.09 Aligned_cols=165 Identities=12% Similarity=0.059 Sum_probs=117.5
Q ss_pred HHHHHHhcCChHHHHHh-hcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhhhhccccc--------ccc
Q psy4858 205 LCNTLRNCGGMDLLISN-CVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVACVCTKNI--------NSV 271 (979)
Q Consensus 205 lc~~ir~~Ggld~Li~~-~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la~~~tk~~--------~~~ 271 (979)
.-..+...||+.++|+. +..++.+|+..|+++|.++... +.++++++.| +.+|+.+..++...- +..
T Consensus 67 ~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~ 146 (684)
T 4gmo_A 67 CRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLL 146 (684)
T ss_dssp HHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhcccccccc
Confidence 34456778999988776 5668999999999999999643 7889999999 899999886542211 111
Q ss_pred c--------hhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCC---hhHHHHHHHhhhhhcccCCchhHHHHHh
Q psy4858 272 E--------HSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKND---IETLRHCAGALANLSLYGGAENQEAMIK 340 (979)
Q Consensus 272 ~--------~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d---~~~lr~ca~ALaNlAl~~~~~~q~~mi~ 340 (979)
. .+-+...+|-+|=.+|++....+++.|+++.|+..|...+ .++...|+.+|.+|+=+...- -..+.+
T Consensus 147 ~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~-~~~i~~ 225 (684)
T 4gmo_A 147 KAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKV-GQAITD 225 (684)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHH-HHHHHh
Confidence 1 2223456777776688899999999999999999997654 578899999999996655222 234455
Q ss_pred cCCcchhcccc--ccCCccchhhHHHHHHHHh
Q psy4858 341 RKVPVWLFPLA--FHNDDNIKYYACLAIAVLV 370 (979)
Q Consensus 341 ~~~~~wL~~La--~s~dd~vr~~A~lAla~La 370 (979)
.+....+..+. .+.++..|..||+.|.|+.
T Consensus 226 ~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 226 DQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp CCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 55544333332 2344566888888888874
No 150
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.84 E-value=0.003 Score=64.67 Aligned_cols=94 Identities=13% Similarity=0.228 Sum_probs=64.8
Q ss_pred hHHHHHHHHHhcCCceEeecccCC----CC-----cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHH
Q psy4858 672 LASLLKVHLELRQFKVFIDVERLE----AG-----KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIV 742 (979)
Q Consensus 672 ~As~L~e~Le~~G~rVFiD~~~Ie----~G-----df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~ 742 (979)
.-.+|+.--.....=-|.|-++.- -| .|.+.|++.|++|+.+|+++|++. ..++|++.||+
T Consensus 33 yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T----------~~s~~v~wEIe 102 (189)
T 3hyn_A 33 YYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSIT----------ANSRALREEMN 102 (189)
T ss_dssp HHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTC----------CCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCc----------cccchhHHHHH
Confidence 444555544444443466765441 11 277889999999999999999994 56789999999
Q ss_pred HHH-hcCCeEEEEecCCC----CC-CCCCChHHHHHHhh
Q psy4858 743 AAL-QSGCNIIPILDNFA----WP-DPEQLPADMRAICK 775 (979)
Q Consensus 743 ~Al-~~~k~IIPVl~~f~----~p-d~e~LPedLr~la~ 775 (979)
.|. +.|++||-|..+.. .. ...++|..++.++.
T Consensus 103 ~Ai~~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~wp 141 (189)
T 3hyn_A 103 YGIGTKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLWD 141 (189)
T ss_dssp HHTTTTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCccccchhhhccccchhhHhhcCC
Confidence 999 99999999976632 11 12345666665544
No 151
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A {Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A 1lky_B 2qb1_A
Probab=96.80 E-value=0.00054 Score=62.60 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=53.4
Q ss_pred cCcCCCCCCCCCHHHHHHHHHHcCchHHH---HHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 499 PHKLSQQVPLWSTEDVREWVRQIGFAEYA---NNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 499 p~kl~~~V~~WS~EDVa~WL~~IGL~eY~---~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
|..+..++..||.++|..||.-. ..+|. ..|....+||..|+.|+++|+....|. .| ..|...++.++...
T Consensus 5 p~~l~~DP~~WS~~~V~~WL~w~-~~ef~L~~~~~~~f~mdGk~Lc~Ls~edF~~~~p~--~G--diL~~hL~~l~~~~ 78 (89)
T 1ji7_A 5 PAHLRLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH--SG--DELYELLQHILKQR 78 (89)
T ss_dssp CGGGCSCGGGCCHHHHHHHHHHH-HHHTTCSCCCTTTTCSCHHHHTTCCHHHHHHHCTT--TH--HHHHHHHHHHHHC-
T ss_pred CCCCCCChhhCCHHHHHHHHHHH-HHhcCCCCCchhcCCCCHHHHHcCCHHHHHhHcCC--ch--HHHHHHHHHHHhCc
Confidence 44556788999999999999876 55554 234466899999999999999755554 23 46778888888754
No 152
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=96.66 E-value=0.0014 Score=66.20 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=50.3
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhh
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~ 644 (979)
.++.+||..++ +..|+..|.. .+-+.+..||++||.. .||+. +||.+|+.+|+.++.
T Consensus 8 ~dV~~WLksLr--LhKY~~~F~~--~~~e~~~~LTdedL~~-~GVT~-GARrKIL~aIq~Lre 64 (173)
T 1oxj_A 8 SGIGLWLKSLR--LHKYIELFKN--MTYEEMLLITEDFLQS-VGVTK-GASHKLALCIDKLKE 64 (173)
T ss_dssp TTHHHHHHHTT--CGGGGGGGTT--CCHHHHTTCCHHHHHH-TTCCH-HHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHcc--cchhHHHHcc--CCHHHHHhcCHHHHHH-CCCch-HHHHHHHHHHHHHHH
Confidence 47889999999 9999999965 5566899999999996 89996 999999999998874
No 153
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.60 E-value=0.014 Score=65.34 Aligned_cols=149 Identities=8% Similarity=0.032 Sum_probs=98.5
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~ 294 (979)
++.|+..+..++..++..|+.+|..+...-..+.+...-+..+.++. +. ++.++-+.+..+|..+..... .+
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~----~d-~~~~vR~~a~~~l~~l~~~~~---~~ 276 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAA----ED-KSWRVRYMVADKFTELQKAVG---PE 276 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHH----TC-SSHHHHHHHHHTHHHHHHHHC---HH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHc----cC-CCHHHHHHHHHHHHHHHHHhC---cc
Confidence 66777888888999999999999998643222223222245555555 22 334566666667777743221 12
Q ss_pred HhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 295 VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 295 lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
.+...-++.++.+|+..++++.+.|+.+|..++-.-+.........+.+...|..++.+.+..+|..||-+|..++.
T Consensus 277 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 277 ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHH
T ss_pred cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 23334578999999999999999999999999765544322212334555667777777777888888888777763
No 154
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1
Probab=96.54 E-value=0.0014 Score=58.81 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHcCchHH-H----HHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHH
Q psy4858 504 QQVPLWSTEDVREWVRQIGFAEY-A----NNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571 (979)
Q Consensus 504 ~~V~~WS~EDVa~WL~~IGL~eY-~----~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk 571 (979)
.++..||.++|..||.-. ..+| . -.+....+||..|+.|+++|+....| ..|+. |...++.+.
T Consensus 9 ~dP~~Ws~~~V~~WL~w~-~~e~~l~l~~~~~~~f~m~G~~Lc~ls~edF~~~~p--~~Gdi--L~~hL~~~l 76 (82)
T 1sv0_C 9 LDPRDWTRADVWKWLINM-AVSEGLEVTAELPQKFPMNGKALCLMSLDMYLCRVP--VGGKM--LYRDFRVRL 76 (82)
T ss_dssp SSGGGCCHHHHHHHHHHH-HHHHTCCCCTHHHHTCCSCHHHHHHCCHHHHHHHCT--TTHHH--HHHHHHHHH
T ss_pred CChhhCCHHHHHHHHHHH-HHHhCCCCCCCccccCCCCHHHHHhCCHHHHHhhCC--CchHH--HHHHHHHHH
Confidence 477899999999999755 4444 1 12556679999999999999985455 45554 777777443
No 155
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.40 E-value=0.053 Score=60.69 Aligned_cols=145 Identities=12% Similarity=0.067 Sum_probs=96.3
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~ 294 (979)
+..|...+..++..++..|+..|.++...-....+.+.-+..+.+++ ++ ++...-..+..+|..+..|..+..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~----~~-~~~~~R~~a~~~l~~~~~~~~~~~-- 161 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLA----GG-DWFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHH----TC-SSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh----cC-CCcHHHHHHHHHHHHHHHhcCHHH--
Confidence 34455555678899999999999999744222333222233344444 33 233444556678888877655332
Q ss_pred HhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc
Q psy4858 295 VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 295 lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
...-++.+..+|...++.+.+.|+.+|.+++-.-+.. .....+...|..++...++.+|..|+-+|..++..
T Consensus 162 --~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 162 --KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD----NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp --HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH----HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH----hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh
Confidence 2223567888888889999999999999997665432 22344556677777777789999999888887754
No 156
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.40 E-value=0.0038 Score=56.33 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=56.6
Q ss_pred cCCCCccChHHHhhhcCCCcchh-HHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhh
Q psy4858 576 YSSKDVTNLNNFLLNLGQEFSIY-TYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIE 643 (979)
Q Consensus 576 yss~d~~~l~ewL~~IGpel~qY-tys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~ 643 (979)
++..+...+..||.-|| ++.| -..|..++||+.+|..|++|+|.+++|+ +.+|.++|+..|+..+
T Consensus 15 Ls~lSv~EVs~~Lr~ig--L~e~vv~~F~~e~IDG~lL~~L~ee~L~edf~l-s~Lq~kKi~~fI~GWr 80 (84)
T 2dkz_A 15 LSGLSIEEVSKSLRFIG--LSEDVISFFVTEKIDGNLLVQLTEEILSEDFKL-SKLQVKKIMQFINGSG 80 (84)
T ss_dssp CSSCCHHHHHHHGGGTC--CCHHHHHHHHTTTCCHHHHHHCCHHHHHHTSCC-CHHHHHHHHHHHHCCC
T ss_pred hhhcCHHHHHHHHHHcC--CcHHHHHHHHHHccchHHHHhCCHHHHHhhcCC-CHHHHHHHHHHHhcCC
Confidence 34555667789999999 8875 5889999999999999999999999999 8899999999998543
No 157
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.31 E-value=0.00041 Score=64.80 Aligned_cols=121 Identities=10% Similarity=0.059 Sum_probs=79.6
Q ss_pred hcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChh
Q psy4858 211 NCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEG 290 (979)
Q Consensus 211 ~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~ 290 (979)
..+.++.|+..+.+++.+++..|+..|.++-.. .+..|+++. +. .+..+.+.+.-+|.++ ..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~---------~~~~L~~~L----~d-~~~~vR~~A~~aL~~~-~~--- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE---------AFEPLLESL----SN-EDWRIRGAAAWIIGNF-QD--- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST---------THHHHHHGG----GC-SCHHHHHHHHHHHGGG-CS---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch---------HHHHHHHHH----cC-CCHHHHHHHHHHHHhc-CC---
Confidence 345678888999999999999998888766421 146666666 33 4567777777777777 21
Q ss_pred hHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHH
Q psy4858 291 TCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAV 368 (979)
Q Consensus 291 t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~ 368 (979)
..+++.|+..++..|+.+.+.|+.||.++. . +.++..|..+..+.+..||..|+.||..
T Consensus 72 -------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~---------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 -------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---G---------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---S---------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---c---------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235788889998889999999999999883 1 2235667777777777889888877653
No 158
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.96 E-value=0.014 Score=62.14 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=115.8
Q ss_pred hcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhchhHHHhhhhhccccccccchhhhhhh----Hhhh
Q psy4858 211 NCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTG----ILEH 283 (979)
Q Consensus 211 ~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~g----iL~~ 283 (979)
..+.+..|+.++...|..++.++-.+||+++.. .=|..+++.+|+.+++++ ++ +|=+++=.|.- +|++
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~ll----k~-~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINAL----SQ-ENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTC----CS-TTHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH----hc-cchhHHHHHHHHHHHHHcC
Confidence 345788999999999999999999999999843 467789999999999999 44 32244433333 5555
Q ss_pred hhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHH
Q psy4858 284 LFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363 (979)
Q Consensus 284 lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~ 363 (979)
. --++++-.+++. +|.....++++-...|+|-.|--+.+-. .-++++.||+-|..|.|..+|--|.
T Consensus 106 v-pL~~~~y~Kl~~-----aL~dlik~~~~il~~eaae~Lgklkv~~--------~~~~V~~~l~sLl~Skd~~vK~agl 171 (265)
T 3b2a_A 106 V-PMGSKTFLKAAK-----TLVSLLESPDDMMRIETIDVLSKLQPLE--------DSKLVRTYINELVVSPDLYTKVAGF 171 (265)
T ss_dssp C-CBCHHHHHHHHH-----HHHHHTTSCCHHHHHHHHHHHHHCCBSC--------CCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred C-CCCHHHHHHHHH-----HHHHHhcCCCchHHHHHHHHhCcCCccc--------chHHHHHHHHHHHhCCChhHHHHHH
Confidence 5 678888888887 9999999999999999999998883333 2457789999999777778888777
Q ss_pred HHHHHHhc---chHHHHH
Q psy4858 364 LAIAVLVA---NTEIEAA 378 (979)
Q Consensus 364 lAla~Las---n~ei~~~ 378 (979)
-|+.+.++ |+++-..
T Consensus 172 ~~L~eia~~S~D~~i~~~ 189 (265)
T 3b2a_A 172 CLFLNMLNSSADSGHLTL 189 (265)
T ss_dssp HHHHHHGGGCSSCCCGGG
T ss_pred HHHHHhhcccCCHHHHHH
Confidence 77777776 3444444
No 159
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.76 E-value=0.059 Score=62.65 Aligned_cols=102 Identities=10% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHh
Q psy4858 217 LLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVI 296 (979)
Q Consensus 217 ~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV 296 (979)
.|.+.+.++|..++..|.+.|.++...+--.++ +..|.++. +. .++.+.+.+.-+|.++++++.+...
T Consensus 90 ~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l----~~~l~~~L----~d-~~~~VRk~A~~al~~i~~~~p~~~~--- 157 (591)
T 2vgl_B 90 SFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL----CEPLRKCL----KD-EDPYVRKTAAVCVAKLHDINAQMVE--- 157 (591)
T ss_dssp HHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHH----HHHHHHHS----SC-SCHHHHHHHHHHHHHHHHSSCCCHH---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHc----CC-CChHHHHHHHHHHHHHHhhChhhcc---
Confidence 444667888888999998888888755544443 34566665 33 4567888888888888887766433
Q ss_pred hcCchHHHHhhhccCChhHHHHHHHhhhhhcccC
Q psy4858 297 GLGGLDTVLFECRKNDIETLRHCAGALANLSLYG 330 (979)
Q Consensus 297 ~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~ 330 (979)
..|.++.|..++...|+.++++|+.||..++-+.
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 2466788888888888999999999999886554
No 160
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=95.68 E-value=0.014 Score=67.90 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=49.3
Q ss_pred chHHHHhhhccCChhHHHHHHHhhhhhccc--CCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 300 GLDTVLFECRKNDIETLRHCAGALANLSLY--GGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 300 gl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~--~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
.++.|+..++..++.+++.|+.++.+++-+ ..++.-.. +-.++...|+.|+. .+.++||.|+.+|..++.
T Consensus 240 ~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 240 ICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHH
Confidence 456788888889999999999999998632 12222222 23455666777764 677999999888887764
No 161
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=95.45 E-value=0.034 Score=61.73 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=100.4
Q ss_pred HHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhh-ccchhhHHHhhc--hhHHHhhhhhccccccccchhhhhhhHhh
Q psy4858 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL-TTENRDHVVENG--LDKVVRVACVCTKNINSVEHSRVGTGILE 282 (979)
Q Consensus 206 c~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~G--l~~lv~la~~~tk~~~~~~~~r~~~giL~ 282 (979)
-..++..||++.||+....++-..|..+=++|.+|+ +..-.+-|+++- +..|..+.. + ++..+.|.+++||+
T Consensus 153 a~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~----s-~~~~V~k~AL~LL~ 227 (339)
T 3dad_A 153 VPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCA----S-LSRLVVKTALKLLL 227 (339)
T ss_dssp HHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGG----C-SCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHc----C-ccHHHHHHHHHHHH
Confidence 456789999999999999999999999999999996 457777788664 888888884 3 56799999999999
Q ss_pred hhhhcChhhHHHHhhcCc----------hHHHHhhhc---cCChhHHHHHHHhhhhhcccCCc
Q psy4858 283 HLFKHSEGTCSDVIGLGG----------LDTVLFECR---KNDIETLRHCAGALANLSLYGGA 332 (979)
Q Consensus 283 ~lfkHSe~t~~~lV~~Gg----------l~~Ll~l~r---~~d~~~lr~ca~ALaNlAl~~~~ 332 (979)
.+.-.|+.++.-++++=. +..|+..+. ++|++++-+ |.+|-|-.+.+.+
T Consensus 228 v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~-amtLIN~lL~~ap 289 (339)
T 3dad_A 228 VFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY-TVTLINKTLAALP 289 (339)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH-HHHHHHHHHHHCS
T ss_pred HHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH-HHHHHHHHHhcCC
Confidence 999999999987776544 889999998 678888777 6677887666644
No 162
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.34 E-value=0.039 Score=51.27 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=70.1
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
.++.|+..+..++..++..|+..|+++-. ...+..|+++. +. ++..+.+.+..+|..+ .
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L----~d-~~~~VR~~A~~aL~~~-~------- 101 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLL----ED-DSGFVRSGAARSLEQI-G------- 101 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHH----HH-CCTHHHHHHHHHHHHH-C-------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHH----cC-CCHHHHHHHHHHHHHh-C-------
Confidence 37899999999999999999999998752 12367777777 22 4557777777788777 2
Q ss_pred HHhhcCchHHHHhhhccCChhHHHHHHHhhhhh
Q psy4858 294 DVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326 (979)
Q Consensus 294 ~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl 326 (979)
...+++.|+.+++..|+.+.+.|+.||.+|
T Consensus 102 ---~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 102 ---GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 234678999999989999999999999875
No 163
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE calcium entry, signaling protein; NMR {Homo sapiens}
Probab=94.89 E-value=0.0078 Score=59.84 Aligned_cols=56 Identities=14% Similarity=0.321 Sum_probs=48.5
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHH---HHHHHcCCCcchhHHHHH
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEE---QLICECGIHNSIHRLRIM 636 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~e---dL~~~cgItn~~Hr~rIl 636 (979)
....+.+||+.. .+||||...|..+.|||..|+.|+.+ .|..++||++..||.||.
T Consensus 82 TvedV~~WL~~~-v~LpqY~~~Fr~~~IdG~~LprL~~~~~~~L~~~LGI~~~~hR~Kl~ 140 (150)
T 2l5y_A 82 TLEDTLQWLIEF-VELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQKLQ 140 (150)
T ss_dssp CHHHHHHHHHHH-TCCTTSHHHHHHHHCSSSTTTTCCSSSCCSTTTTSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHc-CCcHHHHHHHHHcCCCHHHhhhhhhcchHHHHHHhCCCCHHHHHHHH
Confidence 445778999884 24999999999999999999999985 456789999999999997
No 164
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.85 E-value=0.11 Score=62.32 Aligned_cols=213 Identities=12% Similarity=0.123 Sum_probs=122.1
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhh-c-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVEN-G-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTC 292 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~-G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~ 292 (979)
+..|++.+.+++.+++..|+.+|.+++........... . +..+.+++ .. ++.++.+.+..+|..+.++..+.-
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~----~d-~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA----GD-EEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH----TC-CCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc----CC-CCHHHHHHHHHHHHHHHHhCHHHH
Confidence 45567778889999999999999988743222221111 2 45555555 33 456788888899999977665443
Q ss_pred HHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhc---CCcchhccccc-----------c-----
Q psy4858 293 SDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKR---KVPVWLFPLAF-----------H----- 353 (979)
Q Consensus 293 ~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~---~~~~wL~~La~-----------s----- 353 (979)
..-++ +-++.++..++..|+.+...|...+.+++-.. .. ...+++ +++.-|+..+. .
T Consensus 251 ~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~--~~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 251 LPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQP--IC-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST--TH-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcch--hH-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 32222 35667788888889999999999998886332 11 122222 22233333331 1
Q ss_pred ------CCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhh-----hhhhhhhccc----
Q psy4858 354 ------NDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAHAH---- 418 (979)
Q Consensus 354 ------~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~-----fAr~~l~~~~---- 418 (979)
.+-.+|..|+.+|..|+..-. ..+ .. ..++.+..++.+.+|.. .|........
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~---------~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYR--DEL---------LP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHG--GGG---------HH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcc--HHH---------HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 112568788888888775421 111 00 12244555555444431 1222111100
Q ss_pred -CCCchhhhhhhhccccchHHHHHHHHHHhh
Q psy4858 419 -GQNRNWLQKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 419 -g~~~g~L~~LvplL~s~~eE~q~lAafhl~ 448 (979)
..-.+.++.|+++|...+.+.|..|+..+.
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLS 425 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 112346677777787777888877777653
No 165
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain, EF-SAM, STIM1, store operated calcium entry regulator, SOCE; NMR {Homo sapiens}
Probab=94.80 E-value=0.0059 Score=60.68 Aligned_cols=60 Identities=13% Similarity=0.237 Sum_probs=50.2
Q ss_pred CccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHH---HHHHcCCCcchhHHHHH-HHHH
Q psy4858 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQ---LICECGIHNSIHRLRIM-EAIH 640 (979)
Q Consensus 580 d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~ed---L~~~cgItn~~Hr~rIl-~AIk 640 (979)
....+.+||+.. .+||||...|..+.|||..|+.|+.++ |..++||++..||.||. .|+.
T Consensus 82 TvedV~~WL~~~-v~LpqY~~~Fr~~~I~G~~LprLa~~~~~~L~~~LgI~~~~hRqKl~lkald 145 (150)
T 2k60_A 82 TVDEVVQWLITY-VELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALD 145 (150)
T ss_dssp CHHHHHHHHHHH-HCCTTHHHHHHHHCCSTTHHHHHSSCHHHHCSSCSCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc-CCcHHHHHHHHHcCCCHHHHHhhccccHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345677999774 349999999999999999999999975 55789999999999987 3554
No 166
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.13 E-value=0.45 Score=57.05 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=103.6
Q ss_pred CChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHh-------hc-hhHHHhhhhhccccccccchhhhhhhHhhhh
Q psy4858 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVE-------NG-LDKVVRVACVCTKNINSVEHSRVGTGILEHL 284 (979)
Q Consensus 213 Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~-------~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~l 284 (979)
+-++.|++.+.+++..++..|..+|..+..+ ....+.. .+ +..++++. +. .+.++...++.+|.++
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~-~~~~~~~~~~~~~~~~il~~l~~~l----~~-~~~~vR~~A~~aL~~~ 201 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICED-SAEILDSDVLDRPLNIMIPKFLQFF----KH-SSPKIRSHAVACVNQF 201 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHH-HTTHHHHCSSSSCHHHHHHHHTTTT----TC-SSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hHHHhchhhhcchHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHH
Confidence 3467888999999999999999999888732 2222221 12 44455544 33 3457777888888888
Q ss_pred hhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHH
Q psy4858 285 FKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACL 364 (979)
Q Consensus 285 fkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~l 364 (979)
+.+....-...+ .+-++.|+..+...|+++.+.|..+|.+++-.....-+. .+ .++...+..++.+.++.+|..|+-
T Consensus 202 ~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~l-~~l~~~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 202 IISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-HM-HNIVEYMLQRTQDQDENVALEACE 278 (852)
T ss_dssp TTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-GH-HHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-HH-HHHHHHHHHHccCCcHHHHHHHHH
Confidence 766544322222 135678888888889999999999999996543211000 01 235667777778888899999999
Q ss_pred HHHHHhcchH
Q psy4858 365 AIAVLVANTE 374 (979)
Q Consensus 365 Ala~Lasn~e 374 (979)
++..++..+.
T Consensus 279 ~l~~l~~~~~ 288 (852)
T 4fdd_A 279 FWLTLAEQPI 288 (852)
T ss_dssp HHHHHTTSTT
T ss_pred HHHHHhcchh
Confidence 9999987653
No 167
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=0.3 Score=60.86 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=88.2
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhh-ccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHH
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCL-TTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCS 293 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~-~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~ 293 (979)
++.|+..+..++..+...||-.|+-+. -+.|.+-| ..|+..+.. +. ++ ++.|.+...|.-+|-..++-+.
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai-----~~LL~~~~e--~~-~e-~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAI-----HDMFTYSQE--TQ-HG-NITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHH-----HHHHHHHHH--CS-CH-HHHHHHHHHHHHHTTTCGGGGH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHH-----HHHHHHHhc--cC-cH-HHHHHHHHHHHhhhCCChHHHH
Confidence 788888888888777778888888884 35554443 455555532 22 22 5667666677777667776666
Q ss_pred HHhhc-----------Cc----------------hHHHHhhhccC-ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcc
Q psy4858 294 DVIGL-----------GG----------------LDTVLFECRKN-DIETLRHCAGALANLSLYGGAENQEAMIKRKVPV 345 (979)
Q Consensus 294 ~lV~~-----------Gg----------------l~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~ 345 (979)
.||+. |+ |+.||..|.+. +.++.+.|+.||+.+++-.. + .+.
T Consensus 545 ~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-e---------~v~ 614 (963)
T 4ady_A 545 DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-T---------TVP 614 (963)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC-S---------SHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH-H---------HHH
Confidence 55442 43 44456666554 56677777778777766541 1 122
Q ss_pred hhcc-ccccCCccchhhHHHHHHHHhc
Q psy4858 346 WLFP-LAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 346 wL~~-La~s~dd~vr~~A~lAla~Las 371 (979)
-++. |+.+.++.||+-|++||+.+++
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 3333 5567777888888888888854
No 168
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=93.89 E-value=0.25 Score=49.36 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHhcCCceEeecccCCCCcchHHH----HHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHH
Q psy4858 670 SQLASLLKVHLELRQFKVFIDVERLEAGKFDNNL----LQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAAL 745 (979)
Q Consensus 670 ~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L----~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al 745 (979)
......+.+.|+..|+.||.-.+.-.+ |...| .+.|++|+++|++++|-.= .....=+..||..|.
T Consensus 26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~--~~~~i~~~d~~~i~~aD~vVA~ldpf~g--------~~~D~GTafEiGyA~ 95 (161)
T 2f62_A 26 ASYYNKVRELLKKENVMPLIPTDNEAT--EALDIRQKNIQMIKDCDAVIADLSPFRG--------HEPDCGTAFEVGCAA 95 (161)
T ss_dssp HHHHHHHHHHHHTTTCEEECTTTTCCS--SHHHHHHHHHHHHHHCSEEEEECCCCSS--------SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEECCCccCcc--hHHHHHHHHHHHHHhCCEEEEEecCCCC--------CCCCCcHHHHHHHHH
Confidence 567788999999999999985432221 34444 6899999999999997210 122334889999999
Q ss_pred hcCCeEEEEecC
Q psy4858 746 QSGCNIIPILDN 757 (979)
Q Consensus 746 ~~~k~IIPVl~~ 757 (979)
..||+||-+..+
T Consensus 96 AlgKPVi~l~~d 107 (161)
T 2f62_A 96 ALNKMVLTFTSD 107 (161)
T ss_dssp HTTCEEEEECSC
T ss_pred HCCCEEEEEEcC
Confidence 999999888644
No 169
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.48 E-value=0.06 Score=49.95 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=48.6
Q ss_pred cCCCCCCCCCHHHHHHHHHH----cCchHHHHHHHhc-CCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 501 KLSQQVPLWSTEDVREWVRQ----IGFAEYANNFVES-RVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 501 kl~~~V~~WS~EDVa~WL~~----IGL~eY~~~F~en-~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+..+...||.++|.+||.- .+|... .+... .++|..|+.|+.+|+.. . ..+.--..|...++.|+..
T Consensus 19 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~F~~m~G~~LC~ls~edF~~-~--~~~~~GdiL~~hL~~Lk~~ 91 (98)
T 1x66_A 19 IVPADPTLWTQEHVRQWLEWAIKEYSLMEI--DTSFFQNMDGKELCKMNKEDFLR-A--TTLYNTEVLLSHLSYLRES 91 (98)
T ss_dssp CCCSSGGGCCTTHHHHHHHHHHHHTTCCSC--CGGGGTTCCHHHHHHCCHHHHHT-T--SCHHHHHHHHHHHHHHHTC
T ss_pred CCCCChhhcCHHHHHHHHHHHHHhcCCCCC--ChhhCCCCCHHHHHcCCHHHHHH-H--cCCCchHHHHHHHHHHHhc
Confidence 34557889999999999973 344332 23344 79999999999999863 2 2232345688999999875
No 170
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein; NMR {Homo sapiens} SCOP: a.60.1.1
Probab=93.42 E-value=0.093 Score=48.62 Aligned_cols=68 Identities=21% Similarity=0.432 Sum_probs=48.4
Q ss_pred cCCCCCCCCCHHHHHHHHHH----cCchHHHHHHHhc-CCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 501 KLSQQVPLWSTEDVREWVRQ----IGFAEYANNFVES-RVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 501 kl~~~V~~WS~EDVa~WL~~----IGL~eY~~~F~en-~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+..+...||.++|..||.- .+|... .+... .++|..|+.|+.+|+....| +.--..|...++.|+..
T Consensus 22 ~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~~m~G~~LC~lt~edF~~~~p---~~~GdiL~~hL~~Lk~~ 94 (97)
T 1sxe_A 22 IVPADPTLWSTDHVRQWLEWAVKEYGLPDV--NILLFQNIDGKELCKMTKDDFQRLTP---SYNADILLSHLHYLRET 94 (97)
T ss_dssp SSCSSTTSCCHHHHHHHHHHHHHHHTCSSC--CGGGSTTCCHHHHTTCCHHHHTTTSC---HHHHHHHHHHHHHHTTS
T ss_pred cCCcchhccCHHHHHHHHHHHHHhcCCCCC--CHHhcCCCCHHHHHhCCHHHHHHHcC---CCchHHHHHHHHHHHhC
Confidence 44568899999999999973 355322 23444 79999999999999863222 23345678888888764
No 171
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.12 E-value=0.077 Score=49.40 Aligned_cols=59 Identities=25% Similarity=0.417 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHHHcCchHH-HHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 507 PLWSTEDVREWVRQIGFAEY-ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY-~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
..=++++|..||+.-||..| ++.| ...+|+.|+.|+.++|+.--| .--|+...|..-|.
T Consensus 32 ~~Ssp~EV~~WL~~kgFS~~tv~~L--g~ltGaqLl~Ltk~eL~~vCg-----EG~RlysqL~vqk~ 91 (99)
T 2e8m_A 32 YDSTPEDVKTWLQSKGFNPVTVNSL--GVLNGAQLFSLNKDELRTVCP-----EGARVYSQITVQKA 91 (99)
T ss_dssp TTCCTTHHHHHHHHHTCCHHHHHHT--SSSCHHHHHHCCHHHHHHHCT-----THHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCC-----chHHHHHHHHHHHH
Confidence 45679999999999999998 8888 789999999999999984335 33455666655444
No 172
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix, transcription; 2.07A {Drosophila melanogaster} SCOP: a.60.1.1 PDB: 1sv4_A
Probab=93.10 E-value=0.057 Score=48.94 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=49.9
Q ss_pred cCcCCCCCCCCCHHHHHHHHHH----cCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 499 PHKLSQQVPLWSTEDVREWVRQ----IGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 499 p~kl~~~V~~WS~EDVa~WL~~----IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
|..+..+...||.++|..||.- .+|+.- .+..-.++|..|+.|+.+|+....| . .| ..|...++.|+...
T Consensus 3 ~~~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~i--~~~~F~m~G~~LC~ls~edF~~~~p-~-~G--diL~~hL~~Lk~~~ 76 (85)
T 1sv0_A 3 PPSLPSDPRLWSREDVLVFLRFCVREFDLPKL--DFDLFQMNGKRLCLLTRADFGHRCP-G-AG--DVLHNVLQMLIIES 76 (85)
T ss_dssp CTTSCSSGGGCCHHHHHHHHHHHHHHTTCCCC--CGGGGCSCHHHHTTCCHHHHHHHST-T-TH--HHHHHHHHHHHHHH
T ss_pred CCCCCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHcC-C-ch--HHHHHHHHHHHHhh
Confidence 3445568889999999999983 344321 2334469999999999999875445 2 34 46778888887754
No 173
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=92.67 E-value=0.057 Score=50.26 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHcCchHH-HHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 507 PLWSTEDVREWVRQIGFAEY-ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 507 ~~WS~EDVa~WL~~IGL~eY-~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
..=++++|..||+.-||..| ++.| ...+|+.|+.|+.++|+.--| . -| -|+...|..-|..
T Consensus 22 ~~Ssp~EV~~WL~~kgFS~~tv~~L--g~ltGaqLf~Ltk~eL~~vCg-~-EG--~RlysqL~~qk~~ 83 (99)
T 1wwu_A 22 YESGPDEVRAWLEAKAFSPRIVENL--GILTGPQLFSLNKEELKKVCG-E-EG--VRVYSQLTMQKAF 83 (99)
T ss_dssp TTCCHHHHHHHHHHHTCCTTHHHHT--TSSCHHHHHTCCHHHHHHHHT-T-TH--HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH--cCCCHHHHHcCCHHHHHHHCc-c-hh--HHHHHHHHHHHHH
Confidence 35579999999999999998 8888 789999999999999984336 3 33 3555666555544
No 174
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=92.51 E-value=0.14 Score=46.49 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=54.4
Q ss_pred cCCCCccChHHHh-hhcCCCcch---hHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhc
Q psy4858 576 YSSKDVTNLNNFL-LNLGQEFSI---YTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645 (979)
Q Consensus 576 yss~d~~~l~ewL-~~IGpel~q---Ytys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~ 645 (979)
+.+..+..+..|+ ...| ++. .-..|..+.|+|.+|..|+-||+++ ++|....+|.+++..|..|+..
T Consensus 9 v~~Wt~~~V~~W~~~~lg--~~d~d~~~~~f~~ndItG~vL~eL~leDlKE-L~i~s~~~r~~lk~~In~Lr~~ 79 (85)
T 1uqv_A 9 FSQWSVDDVITWCISTLE--VEETDPLCQRLRENDIVGDLLPELCLQDCQD-LCDGDLNKAIKFKILINKMRDS 79 (85)
T ss_dssp TTTCCHHHHHHHHHHHHS--SCTTSTHHHHHHHSCCCGGGHHHHHHHHHHH-TSSSCHHHHHHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHHhC--CCCccHHHHHHHHcCCchhhHHHcCHHHHHH-hCchHHHHHHHHHHHHHHHHHh
Confidence 3455667788898 5555 322 3456999999999999999999995 9999999999999999999743
No 175
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=92.45 E-value=0.09 Score=47.11 Aligned_cols=63 Identities=25% Similarity=0.317 Sum_probs=48.0
Q ss_pred HHHHHHHHcCchHHHHHHHhcCCChh-HHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhcccC
Q psy4858 513 DVREWVRQIGFAEYANNFVESRVDGD-LLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYS 577 (979)
Q Consensus 513 DVa~WL~~IGL~eY~~~F~en~IDG~-~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~~ys 577 (979)
.|+.||..+|++.|.+.|.+.+..-- .|=.++-+||. .+.|. -.||.+||+.+-+++...+|+
T Consensus 8 Sv~s~Lt~LGc~~~Id~F~~qgl~~i~qL~~~~ledL~-~mkIp-e~~R~kIWk~l~e~~q~~~~s 71 (80)
T 1dxs_A 8 SLVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLG-ALKIP-EQYRMTIWRGLQDLKQGHDYS 71 (80)
T ss_dssp CHHHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHH-HTTCC-TTTHHHHHHHHHHC-------
T ss_pred cHHHHHHhcCchHHHHHHHHcCcccchhhccCCHHHHH-hCCCC-HHHHHHHHhhHHHhccccCCC
Confidence 48999999999999999988776554 45578889987 68887 679999999999999887764
No 176
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.05 E-value=0.15 Score=55.15 Aligned_cols=138 Identities=14% Similarity=0.044 Sum_probs=94.1
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcC-----
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS----- 288 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS----- 288 (979)
|.-++..+.+||.+++..|-.-|+++-.. | ..| +..|+.+... ...+..+-..+.-+|.|++++.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~-~-----~~~~~~~L~~il~~---~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVE-N-----LPTFLVELSRVLAN---PGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHC---TTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-C-----hHHHHHHHHHHHHc---CCCChHHHHHHHHHHHHhccccchHHH
Confidence 44578889999999999998888886521 1 223 4556666643 1123344445556788886543
Q ss_pred -----------hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccC--C
Q psy4858 289 -----------EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHN--D 355 (979)
Q Consensus 289 -----------e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~--d 355 (979)
++.+..|.. .|+..+...++.+ +.++.+|+.+|...++.. .++.+...|+..+.+. +
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~-----~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~ 143 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKN-----YVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNST 143 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHH-----HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCC
T ss_pred HHHHhhhhcCCHHHHHHHHH-----HHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCC
Confidence 344444433 6888888888888 999999999987764431 2567777788888777 7
Q ss_pred ccchhhHHHHHHHHhc
Q psy4858 356 DNIKYYACLAIAVLVA 371 (979)
Q Consensus 356 d~vr~~A~lAla~Las 371 (979)
+.+|..|+.++..++.
T Consensus 144 ~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 144 EHMKESTLEAIGYICQ 159 (462)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888777777664
No 177
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription, signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Probab=91.79 E-value=0.06 Score=49.36 Aligned_cols=66 Identities=21% Similarity=0.352 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHH----cCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 502 LSQQVPLWSTEDVREWVRQ----IGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 502 l~~~V~~WS~EDVa~WL~~----IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
+..+...||.++|..||.- .+|+.. .+....++|..|+.|+.+|+....+ + | ..|...++.|+...
T Consensus 19 ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v--~~~~f~m~G~~LC~ls~edF~~~~p--~-G--diL~~hL~~L~k~~ 88 (91)
T 1sxd_A 19 IPYDPIHWSTDQVLHWVVWVMKEFSMTDI--DLTTLNISGRELCSLNQEDFFQRVP--R-G--EILWSHLELLRKYV 88 (91)
T ss_dssp CCSSGGGCCHHHHHHHHHHHHHHTTCCCS--CSGGGCSCHHHHHHSCHHHHHHHCT--T-C--HHHHHHHHHHHHTT
T ss_pred CCCChhhCCHHHHHHHHHHHHHccCCCCC--ChhhCCCCHHHHHcCCHHHHHHHCC--C-c--hHHHHHHHHHHHhh
Confidence 4457889999999999973 355422 2334579999999999999875444 2 4 47888888888653
No 178
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.44 E-value=1.4 Score=44.75 Aligned_cols=169 Identities=9% Similarity=0.078 Sum_probs=102.7
Q ss_pred chhHHHHHHHHHHHHhhccCCcc-hhHHHHHHHHHHhcCChHHHHHhhc-CCChhHHhHHHHHHHHhhccchh--hHHHh
Q psy4858 176 RAPAVLDKVNDLMQKAWAVPTHG-HEIGYSLCNTLRNCGGMDLLISNCV-EKDLDLQFSSARLLEQCLTTENR--DHVVE 251 (979)
Q Consensus 176 ~~~~~~~~~~~~~~~Awa~p~~~-~~~~~~lc~~ir~~Ggld~Li~~~~-s~~~~~q~~aa~~Le~~~~~~Nr--~~Iv~ 251 (979)
..-.++..+..+++.. |.+. ..+ ..+ ++.|...+. .++..++..|+.+|+.++..-.. ...+.
T Consensus 31 ~R~~a~~~L~~l~~~~---~~~~~~~~-~~i---------~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 31 LRKESLEVLEKLLTDH---PKLENGEY-GAL---------VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHHHHHHHHHHHHC---SSBCCCCC-HHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHHHHHHHHHHHccC---CCCCCCCH-HHH---------HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4456777777777652 1110 011 112 233556664 78999999999999999743111 11111
Q ss_pred hchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCC
Q psy4858 252 NGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGG 331 (979)
Q Consensus 252 ~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~ 331 (979)
.=+..|++.. +. +...+...+..+|..++.... -..+ ++.|+..++..++.++..+...|..+.-..+
T Consensus 98 ~ilp~ll~~l----~d-~~~~vr~~a~~aL~~~~~~~~--~~~l-----l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 98 ACVPSLLEKF----KE-KKPNVVTALREAIDAIYASTS--LEAQ-----QESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHGG----GC-CCHHHHHHHHHHHHHHHTTSC--HHHH-----HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHH----cC-CCHHHHHHHHHHHHHHHHcCC--HHHH-----HHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1144555444 44 224666777788888876542 2333 4578888888899999999999999643322
Q ss_pred ch-hHHHHHhcCCcchhccccccCCccchhhHHHHHHHHh
Q psy4858 332 AE-NQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV 370 (979)
Q Consensus 332 ~~-~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~La 370 (979)
+. .-...+ +.+...|+.++...+..||-.|..++..++
T Consensus 166 ~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 166 PTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 22 001111 245667777777777788888877776665
No 179
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.32 E-value=0.1 Score=48.30 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 503 SQQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
..+...||.++|..||. +.+|...- +....++|..|+.|+.+|+....+ . .| ..|...++.|+..+
T Consensus 21 p~DP~~Ws~~~V~~WL~W~~~ef~L~~i~--~~~f~m~G~~LC~lskedF~~~~p-~-~G--diL~~hL~~Lk~~~ 90 (96)
T 2dkx_A 21 TADPMDWSPSNVQKWLLWTEHQYRLPPMG--KAFQELAGKELCAMSEEQFRQRSP-L-GG--DVLHAHLDIWKSAA 90 (96)
T ss_dssp CSCGGGCCSSTHHHHHHHHHHHTTCCCCH--HHHSSCCHHHHHHSCHHHHHHHCS-S-ST--HHHHHHHHHHHHHH
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCCCC--cccCCCCHHHHHhCCHHHHHHHcC-c-ch--HHHHHHHHHHHhcc
Confidence 34778999999999997 34565432 344569999999999999875334 2 33 46888898888754
No 180
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=90.73 E-value=0.44 Score=42.04 Aligned_cols=53 Identities=23% Similarity=0.414 Sum_probs=45.9
Q ss_pred HHHHHcCc-----hHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHH
Q psy4858 516 EWVRQIGF-----AEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNL 570 (979)
Q Consensus 516 ~WL~~IGL-----~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~L 570 (979)
+|.-..|. ..|+.+|.++.++-..|..|+.+-|+ +|||+ -|+.-++++.+...
T Consensus 7 ~FFl~aGv~~~~c~rYA~~F~~~ri~e~mL~Dl~~~~Lr-~LGi~-eGDIIrVmk~l~~k 64 (72)
T 3idw_A 7 EFFLNCGVDVSNCQRYTINFDREQLTEDMMPDINNSMLR-TLGLR-EGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTCCGGGGGGCCHHHHH-HTTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHccCCHHHHhhCCHHHHH-HcCCc-hhhHHHHHHHHHHH
Confidence 44456674 57999999999999999999999998 79997 89999999988764
No 181
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.13 E-value=0.16 Score=49.23 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=48.0
Q ss_pred cCCCCCCCCCHHHHHHHHHH----cCchHHHHHHHhc-CCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 501 KLSQQVPLWSTEDVREWVRQ----IGFAEYANNFVES-RVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 501 kl~~~V~~WS~EDVa~WL~~----IGL~eY~~~F~en-~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
.+..+...||.++|..||.- .+|..- .+... .++|..||.|+.+|+....+. .--..|...++.|+..
T Consensus 33 ~IP~DP~~WS~~~V~~WL~Wa~~ef~L~~i--d~~~Fq~mnGk~LC~LskeDF~~~~p~---~~GDiL~~hL~~Lr~~ 105 (128)
T 2ytu_A 33 IVPADPTLWTQEHVRQWLEWAIKEYSLMEI--DTSFFQNMDGKELCKMNKEDFLRATTL---YNTEVLLSHLSYLRES 105 (128)
T ss_dssp SCCSCGGGCCTTHHHHHHHHHHHHTCCCSC--CCGGGSSCCTTHHHHCCHHHHHHHSCH---HHHHHHHHHHHHHHHH
T ss_pred cCCcchhhCCHHHHHHHHHHHHHhcCCCCC--ChHhCCCCCHHHHHcCCHHHHHHHcCC---CchHHHHHHHHHHHhc
Confidence 34457889999999999973 344331 23344 699999999999998643332 2234588888888876
No 182
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase phosphorylation site, alpha-helical bundle, transcription factor, DNA-binding, nucleus; NMR {Mus musculus} PDB: 2kmd_A*
Probab=90.04 E-value=0.16 Score=48.08 Aligned_cols=67 Identities=19% Similarity=0.321 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHH----HcCchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhh
Q psy4858 502 LSQQVPLWSTEDVREWVR----QIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573 (979)
Q Consensus 502 l~~~V~~WS~EDVa~WL~----~IGL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~ 573 (979)
+..+...||.++|..||. +.+|... .+....++|..|+.|+.+|+....|. .--..|...++.|+..
T Consensus 37 ip~DP~~WS~~~V~~WL~W~~~ef~L~~v--~~~~F~m~G~~LC~ls~edF~~~~p~---~~GdiL~~hL~~Lk~~ 107 (110)
T 2jv3_A 37 IPKDPRQWTETHVRDWVMWAVNEFSLKGV--DFQKFCMSGAALCALGKECFLELAPD---FVGDILWEHLEILQKE 107 (110)
T ss_dssp CCSSSTTCCHHHHHHHHHHHHHHHTCCCC--CTTTTCCCHHHHHHTHHHHHHHHSCH---HHHHHHHHHHHHHHHT
T ss_pred CCCChHhCCHHHHHHHHHHHHHhcCCCCC--ChhcCCCCHHHHHhCCHHHHHHHcCC---CcHHHHHHHHHHHHHh
Confidence 345789999999999996 3344422 23344799999999999998743332 1335678888888764
No 183
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.44 E-value=0.14 Score=47.19 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHh
Q psy4858 503 SQQVPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572 (979)
Q Consensus 503 ~~~V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~ 572 (979)
..+...||.++|.+||.-. +|.--.-.|....+||..|+.|+.+|+....+. .| ..|...++.|+.
T Consensus 21 ~~dP~~Ws~~~V~~WL~Wavke~~~dl~~i~~~~f~m~G~~LC~mskedF~~~~p~--~G--diL~~hL~~L~~ 90 (92)
T 2e8p_A 21 GEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP--LG--DQLHAQLRDLTS 90 (92)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHTTCCCSSCCTTTCCCCSHHHHHSCHHHHHHHSGG--GH--HHHHHHHHHHHH
T ss_pred CCChhhcCHHHHHHHHHHHHHHhCCCCCCCChhhcCCCHHHHHcCCHHHHHHHcCC--cH--HHHHHHHHHHHh
Confidence 4577899999999999733 332112234455799999999999998743343 33 567788888875
No 184
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.15 E-value=0.85 Score=47.59 Aligned_cols=152 Identities=8% Similarity=0.032 Sum_probs=97.2
Q ss_pred HHHHHhh-cCCChhHHhHHHHHHHHhhccchh-hHHH-hh---chhHHHhhhhhccccccccchhhhhhhHhhhhhhcCh
Q psy4858 216 DLLISNC-VEKDLDLQFSSARLLEQCLTTENR-DHVV-EN---GLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSE 289 (979)
Q Consensus 216 d~Li~~~-~s~~~~~q~~aa~~Le~~~~~~Nr-~~Iv-~~---Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe 289 (979)
+.|...+ ..++..++..|+++|+++... =+ ..+. .. =|.+|+... ++.+ ..+...+..+|..++.+.+
T Consensus 63 ~~L~~~l~~D~n~~v~~~A~~al~~la~~-l~~~~f~~~y~~~llp~ll~~l----~dkk-~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 63 GIYGHIIQKDANIQAVALAAQSVELICDK-LKTPGFSKDYVSLVFTPLLDRT----KEKK-PSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHH-HCTTTSCHHHHHHHHHHHHHGG----GCCC-HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHh-cccccccHHHHHHHHHHHHHHH----cCCC-HHHHHHHHHHHHHHHHHcc
Confidence 3444555 567888899999999999732 12 2222 11 155666555 4422 4666777778999988875
Q ss_pred hh-----HHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch-hHH-HHHhcCCcchhccccccCCccchhhH
Q psy4858 290 GT-----CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE-NQE-AMIKRKVPVWLFPLAFHNDDNIKYYA 362 (979)
Q Consensus 290 ~t-----~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~-~q~-~mi~~~~~~wL~~La~s~dd~vr~~A 362 (979)
.. -..++ +.|+..+.+..+.++..|...|+.++-..+.. .+- .-+.+..++-|..++..++..||-.|
T Consensus 137 ~~~~~~~l~~ll-----~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA 211 (249)
T 2qk1_A 137 PLASSGRNEDML-----KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIG 211 (249)
T ss_dssp TTCTTCTTHHHH-----HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHH
T ss_pred ccccCCcHHHHH-----HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 31 23343 48888899999999999999999996544321 111 11235667788888888877888877
Q ss_pred HHHHHH---HhcchHHHHH
Q psy4858 363 CLAIAV---LVANTEIEAA 378 (979)
Q Consensus 363 ~lAla~---Lasn~ei~~~ 378 (979)
+-++.. .++++.+..-
T Consensus 212 ~~~l~~i~~~vG~~~~~p~ 230 (249)
T 2qk1_A 212 FESFAILIKIFGMNTFVKT 230 (249)
T ss_dssp HHHHHHHHHHHCSGGGHHH
T ss_pred HHHHHHHHHHhCHHHHHHH
Confidence 655544 3444444443
No 185
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.94 E-value=2.8 Score=49.10 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=96.2
Q ss_pred chhHHHHHHHHHHhcC--------ChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhcccccc
Q psy4858 198 GHEIGYSLCNTLRNCG--------GMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNIN 269 (979)
Q Consensus 198 ~~~~~~~lc~~ir~~G--------gld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~ 269 (979)
++++-++.+.+|...+ +.+.|++.+.+++.++|+.|...|..+... .-.++..-+..++... +. .
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~--~p~~~~~~~~~i~~~l----~d-~ 362 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT--DHNAVQRHRSTIVDCL----KD-L 362 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHH--HHHHHGGGHHHHHHGG----GS-S
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHc----cC-C
Confidence 4455555555555432 466777778888888888888888877632 2234444455555554 33 5
Q ss_pred ccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcc
Q psy4858 270 SVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFP 349 (979)
Q Consensus 270 ~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~ 349 (979)
|..+.+.+.-+|..|.. +.|...|+ +.|+.-+...|.++.+.+..+|.+||.--.+. -.+.+ .-|+.
T Consensus 363 d~~Ir~~alelL~~l~~--~~nv~~iv-----~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~~~~v-----~~ll~ 429 (618)
T 1w63_A 363 DVSIKRRAMELSFALVN--GNNIRGMM-----KELLYFLDSCEPEFKADCASGIFLAAEKYAPS-KRWHI-----DTIMR 429 (618)
T ss_dssp CHHHHHHHHHHHHHHCC--SSSTHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-HHHHH-----HHHHH
T ss_pred ChhHHHHHHHHHHHHcc--cccHHHHH-----HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-HHHHH-----HHHHH
Confidence 66788887777777744 34456665 47777788888888888888888887632111 12222 22333
Q ss_pred ccccCCccchhhHHHHHHHHhc-chHHHHH
Q psy4858 350 LAFHNDDNIKYYACLAIAVLVA-NTEIEAA 378 (979)
Q Consensus 350 La~s~dd~vr~~A~lAla~Las-n~ei~~~ 378 (979)
+.....+.++..+.-++..+.. +++.+..
T Consensus 430 lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~ 459 (618)
T 1w63_A 430 VLTTAGSYVRDDAVPNLIQLITNSVEMHAY 459 (618)
T ss_dssp HHHHTGGGSCSSHHHHHHHHHHHSCSTHHH
T ss_pred HHHhccchhHHHHHHHHHHHHhcChhHHHH
Confidence 4444444555555555555544 2444443
No 186
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=88.39 E-value=2.1 Score=47.79 Aligned_cols=202 Identities=15% Similarity=0.088 Sum_probs=95.7
Q ss_pred HHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhc
Q psy4858 219 ISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGL 298 (979)
Q Consensus 219 i~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~ 298 (979)
.+-|+++|+-++..|-|.|..+..++--+++.+. |.+.. .. +++-+.+.|.=...+||.+..+.. +
T Consensus 110 ~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~----lk~~L----~d-~~pyVRk~A~l~~~kL~~~~pe~v----~- 175 (355)
T 3tjz_B 110 TKDMTGKEDSYRGPAVRALCQITDSTMLQAIERY----MKQAI----VD-KVPSVSSSALVSSLHLLKCSFDVV----K- 175 (355)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHH----HHHHH----TC-SSHHHHHHHHHHHHHHTTTCHHHH----H-
T ss_pred HhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHH----HHHHc----CC-CCHHHHHHHHHHHHHHhccCHHHH----H-
Confidence 4568888888888888888888766543333322 22222 22 344566665556668887776643 3
Q ss_pred CchHHHHhhhccCChhHHHHHHHhhhhhcccCC-----------------chhHHHHHh--------------cCCcchh
Q psy4858 299 GGLDTVLFECRKNDIETLRHCAGALANLSLYGG-----------------AENQEAMIK--------------RKVPVWL 347 (979)
Q Consensus 299 Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~-----------------~~~q~~mi~--------------~~~~~wL 347 (979)
+.++.+-.++...++-+++||.++|..+.-... +-.|-.+++ ......|
T Consensus 176 ~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l 255 (355)
T 3tjz_B 176 RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFI 255 (355)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 567788888888888888888888887754221 111111222 2344567
Q ss_pred ccccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-hhh-hhhhh-cccCCCchh
Q psy4858 348 FPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-EFA-KSNLA-HAHGQNRNW 424 (979)
Q Consensus 348 ~~La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-~fA-r~~l~-~~~g~~~g~ 424 (979)
.+.+.+.++-|.|.|+.+|..|-+. ..+ +. .-+...+..|+++.+|. .|+ ..++. ..+. ..+.
T Consensus 256 ~~~L~~~~~aVvyEa~k~I~~l~~~---~~~---------~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~-~P~~ 321 (355)
T 3tjz_B 256 ESCLRNKHEMVVYEAASAIVNLPGC---SAK---------EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK-HPSA 321 (355)
T ss_dssp -CCCCCSSHHHHHHHHHHHTC------------------------CCCTHHHHHHSSSSSSHHHHHHCC-----------
T ss_pred HHHHcCCChHHHHHHHHHHHhccCC---CHH---------HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-CcHH
Confidence 7777788888888888888877542 112 11 12346777888887774 443 22222 1111 1112
Q ss_pred h----hhhhhccccchHHHHHHHHHHhh
Q psy4858 425 L----QKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 425 L----~~LvplL~s~~eE~q~lAafhl~ 448 (979)
+ .-+..+|...++-+..+|.-+++
T Consensus 322 v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 322 VTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2 23445566666666677766654
No 187
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=87.95 E-value=1.1 Score=52.46 Aligned_cols=137 Identities=10% Similarity=-0.036 Sum_probs=96.2
Q ss_pred HHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhc
Q psy4858 219 ISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGL 298 (979)
Q Consensus 219 i~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~ 298 (979)
.+-|.++|+-+++.|.++|.++... .+++.-+..|.++. +. .+..+-+.+.-.|.++|+++.+...
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~~----~~~~~l~~~l~~~L----~~-~~~~VRk~A~~al~~l~~~~p~~v~----- 178 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGSS----EMCRDLAGEVEKLL----KT-SNSYLRKKAALCAVHVIRKVPELME----- 178 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHH----HS-CCHHHHHHHHHHHHHHHHHCGGGGG-----
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCCH----HHHHHHHHHHHHHH----cC-CCHHHHHHHHHHHHHHHHHChHHHH-----
Confidence 3467899999999999999999743 35554466666666 33 4568888888899999998776443
Q ss_pred CchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc---------------cCCccchhhHH
Q psy4858 299 GGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF---------------HNDDNIKYYAC 363 (979)
Q Consensus 299 Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~---------------s~dd~vr~~A~ 363 (979)
+-++.|..++...|+.++..|..+|.-++-.. +.. ...-.+.+.-|+.+.. ..++..|....
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~-~~~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERS-PDM--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH-HHH--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC-hHH--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 56778888998899999999999999985332 110 1111244444554333 24667777777
Q ss_pred HHHHHHhcc
Q psy4858 364 LAIAVLVAN 372 (979)
Q Consensus 364 lAla~Lasn 372 (979)
-+|+.++..
T Consensus 256 ~~L~~l~~~ 264 (618)
T 1w63_A 256 RLLRILGRN 264 (618)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhCCC
Confidence 777777764
No 188
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=86.53 E-value=0.4 Score=51.86 Aligned_cols=116 Identities=11% Similarity=0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhc-hhHHHhhhhhcccccc-ccchhhhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENG-LDKVVRVACVCTKNIN-SVEHSRVGTG 279 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~-~~~~~r~~~g 279 (979)
....-+.|++ .|+..+.+++..+ ..++.+|..+...+--+.- -.. +..|+... .+.. +..+...+..
T Consensus 84 ~~~~~~~ik~-----~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~-w~~ll~~L~~~l----~~~~~~~~~r~~al~ 152 (462)
T 1ibr_B 84 DANARREVKN-----YVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ-WPELIPQLVANV----TNPNSTEHMKESTLE 152 (462)
T ss_dssp CHHHHHHHHH-----HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC-CTTHHHHHHHHH----HCTTCCHHHHHHHHH
T ss_pred CHHHHHHHHH-----HHHHHhCCCCchh-hHHHHHHHHHHHHhccccc-cHHHHHHHHHHh----ccCCCCHHHHHHHHH
Confidence 3344445543 4667777788888 8889999998632110000 022 55566665 3321 4566667778
Q ss_pred HhhhhhhcChhhH-HHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhccc
Q psy4858 280 ILEHLFKHSEGTC-SDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLY 329 (979)
Q Consensus 280 iL~~lfkHSe~t~-~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~ 329 (979)
+|..++++..... ...+ ..-++.++..+... ++.+.+.++.||.++.-+
T Consensus 153 ~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (462)
T 1ibr_B 153 AIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (462)
T ss_dssp HHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888877542111 1111 23556788888887 688999999999998543
No 189
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=86.24 E-value=2.3 Score=42.61 Aligned_cols=77 Identities=10% Similarity=0.168 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhc--CCceEeecccC----CCC-cchHHHH----HHHHhCCEEEEEECcccchhhcccCCCcCChhHHH
Q psy4858 671 QLASLLKVHLELR--QFKVFIDVERL----EAG-KFDNNLL----QSIKQARNFLLVLTPKALDRCMEDNESECKDWVHR 739 (979)
Q Consensus 671 ~~As~L~e~Le~~--G~rVFiD~~~I----e~G-df~~~L~----~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~r 739 (979)
.....+.+.|+.. |+.||.=.+.- .++ .|...|. +.|+.|+++|.++... ..+..+.-
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ldg~-----------~~D~Gt~~ 88 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLDGP-----------TIDAGVAS 88 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECCSS-----------SCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCC-----------CCCCCHHH
Confidence 3556688889875 89998733322 122 3655554 4699999999999532 34578999
Q ss_pred HHHHHHhcCCeEEEEecCC
Q psy4858 740 EIVAALQSGCNIIPILDNF 758 (979)
Q Consensus 740 EL~~Al~~~k~IIPVl~~f 758 (979)
||..|...||+||.+..++
T Consensus 89 EiG~A~a~gkPVi~~~~D~ 107 (162)
T 3ehd_A 89 EIGVAYAKGIPVVALYTDS 107 (162)
T ss_dssp HHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHCCCEEEEEEcCc
Confidence 9999999999999998775
No 190
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=84.33 E-value=13 Score=36.67 Aligned_cols=129 Identities=16% Similarity=0.096 Sum_probs=73.1
Q ss_pred CCCCCeeEecccCC-c--cchHHHHHHHHHhcCCceEeecccC----CCC-c---chHHH----HHHHHhCCEEEEEECc
Q psy4858 655 DKNLDVFISYRRSN-G--SQLASLLKVHLELRQFKVFIDVERL----EAG-K---FDNNL----LQSIKQARNFLLVLTP 719 (979)
Q Consensus 655 ~~~yDVFISYRR~D-g--~~~As~L~e~Le~~G~rVFiD~~~I----e~G-d---f~~~L----~~aI~~SrvfIvVLSp 719 (979)
.+...|||+=.-.. . ......+.+.|+..| .|+.+.... ..| . ....| .+.|+.||++|++++.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~~ 87 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVTQ 87 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECSS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECCC
Confidence 34567998744332 1 113477889999999 886542111 112 1 11223 4689999999998872
Q ss_pred ccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHHHHHhh
Q psy4858 720 KALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLERFMRG 799 (979)
Q Consensus 720 ~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIvr~I~g 799 (979)
. +.=+..|+..|...||+||-+..+. +...+-.-++.+...+.+....-..++....|.+++..
T Consensus 88 ~-------------d~Gt~~EiGyA~algKPVi~l~~~~---~~~~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 88 P-------------SLGVGYELGRAVALGKPILCLFRPQ---SGRVLSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp C-------------CHHHHHHHHHHHHTCSSEEEEECTT---TTCCCCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHT
T ss_pred C-------------CCCHHHHHHHHHHCCCEEEEEEcCC---CCCcchhhhcccCccceeEEEecCHHHHHHHHHHHHHh
Confidence 2 2347889999999999998875432 11122111333322111211111345666777777765
Q ss_pred c
Q psy4858 800 E 800 (979)
Q Consensus 800 ~ 800 (979)
.
T Consensus 152 ~ 152 (165)
T 2khz_A 152 Y 152 (165)
T ss_dssp S
T ss_pred c
Confidence 4
No 191
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=83.62 E-value=3.3 Score=41.14 Aligned_cols=112 Identities=21% Similarity=0.205 Sum_probs=67.1
Q ss_pred chHHHHHHHHHhcCCceEee---cccC-C-----CCc---chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHH
Q psy4858 671 QLASLLKVHLELRQFKVFID---VERL-E-----AGK---FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVH 738 (979)
Q Consensus 671 ~~As~L~e~Le~~G~rVFiD---~~~I-e-----~Gd---f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~ 738 (979)
.+-..+.+.|+..| .||-+ ...+ . .|. +.+.=.+.|+.|+++|++++.- +.=+.
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~~~-------------d~Gt~ 84 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVTQP-------------SLGVG 84 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECSSC-------------CHHHH
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCCCC-------------CCCHH
Confidence 56678999999999 78642 1111 0 121 3344456899999999988732 23478
Q ss_pred HHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHHhhhcccccccccHHHHHHHHH-HHHhhc
Q psy4858 739 REIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHDYQDACVDKLE-RFMRGE 800 (979)
Q Consensus 739 rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~~yq~a~IdkIv-r~I~g~ 800 (979)
.|+..|...||+|+-++.. .....+..-++...+-..+.. .+|.++.|++|+ +|+...
T Consensus 85 ~EiG~A~algkPV~~l~~~---~~~~~ls~mi~G~~~~~~~~~-~~Y~~~el~~il~~f~~~~ 143 (152)
T 4fyk_A 85 YELGRAVALGKPILCLFRP---QSGRVLSAMIRGAADGSRFQV-WDYAEGEVETMLDRYFEAY 143 (152)
T ss_dssp HHHHHHHHTTCCEEEEECG---GGSCCCCHHHHHHCCSSSEEE-EECCTTCHHHHHHHHHC--
T ss_pred HHHHHHHHcCCeEEEEEeC---CccchhHHHHcCCCCCCeEEE-EEecHHHHHHHHHHHHHhh
Confidence 8999999999998887642 123467777777754222221 233335555544 444433
No 192
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=83.47 E-value=11 Score=44.41 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=70.3
Q ss_pred hHHHHHhhcCC--ChhHHhHHHHHHHHhhcc--chh-hHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcCh
Q psy4858 215 MDLLISNCVEK--DLDLQFSSARLLEQCLTT--ENR-DHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSE 289 (979)
Q Consensus 215 ld~Li~~~~s~--~~~~q~~aa~~Le~~~~~--~Nr-~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe 289 (979)
+..|++.+..+ +.+++..|.++|..++.. .+- ....+.. ++.+.+..... .+.++.+.+..+|..+..+..
T Consensus 174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~---il~~l~~~~~~-~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF---IMQVVCEATQC-PDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH---HHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhH
Confidence 34455666666 588999999999998632 221 1111222 23333332233 345667777888888877666
Q ss_pred hhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcc
Q psy4858 290 GTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328 (979)
Q Consensus 290 ~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl 328 (979)
......+...-++.++..+...++++...|...+.+++-
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 555544554667788877777788999999888888853
No 193
>1dxs_A P53-like transcription factor; P73 SAM-like domain, gene regulation, P53 P63 homologue, sterIle alpha motif, tumour supressor; 2.54A {Homo sapiens} SCOP: a.60.1.2 PDB: 1cok_A
Probab=83.15 E-value=1.8 Score=38.83 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=51.6
Q ss_pred cChHHHhhhcCCCcchhHHHHHhcCC-CchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhhhhcc
Q psy4858 582 TNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREW 646 (979)
Q Consensus 582 ~~l~ewL~~IGpel~qYtys~l~~Gv-D~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l~~~~ 646 (979)
.++..||..+| ++.|-..|...|+ ..--|..++.|||.. ++|.. -||.+|..++.+++...
T Consensus 7 ~Sv~s~Lt~LG--c~~~Id~F~~qgl~~i~qL~~~~ledL~~-mkIpe-~~R~kIWk~l~e~~q~~ 68 (80)
T 1dxs_A 7 PSLVSFLTGLG--CPNCIEYFTSQGLQSIYHLQNLTIEDLGA-LKIPE-QYRMTIWRGLQDLKQGH 68 (80)
T ss_dssp -CHHHHHHHTT--CTTSHHHHHTTTCCCHHHHHTCCHHHHHH-TTCCT-TTHHHHHHHHHHC----
T ss_pred ccHHHHHHhcC--chHHHHHHHHcCcccchhhccCCHHHHHh-CCCCH-HHHHHHHhhHHHhcccc
Confidence 47889999999 9999999999999 699999999999995 99995 47999999999887654
No 194
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=81.35 E-value=3.5 Score=48.63 Aligned_cols=100 Identities=7% Similarity=0.027 Sum_probs=76.5
Q ss_pred HhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcC
Q psy4858 220 SNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLG 299 (979)
Q Consensus 220 ~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~G 299 (979)
+-|.++|.-+++.|-++|.++.+++ +++.=+..|.++... ...+.-+-+.|.-.+.++|+++.+.... .+
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~~~e----~~~~l~~~v~~~l~~---~d~~~~VRK~A~~al~kl~~~~p~~~~~---~~ 187 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVGSRE----MAEAFAGEIPKILVA---GDTMDSVKQSAALCLLRLYRTSPDLVPM---GD 187 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHCCHH----HHHHHTTHHHHHHHC---SSSCHHHHHHHHHHHHHHHHHCGGGCCC---CS
T ss_pred HhcCCCCHHHHHHHHHHhhccCCHH----HHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHHHhChhhcCc---hh
Confidence 4678999999999999999997543 555546666666621 1244577788888999999987754431 47
Q ss_pred chHHHHhhhccCChhHHHHHHHhhhhhccc
Q psy4858 300 GLDTVLFECRKNDIETLRHCAGALANLSLY 329 (979)
Q Consensus 300 gl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~ 329 (979)
-++.|..++...|+.++..|..+|..++-.
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 788999999888999999999999988543
No 195
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=80.66 E-value=0.5 Score=49.92 Aligned_cols=69 Identities=25% Similarity=0.339 Sum_probs=48.5
Q ss_pred CcCCCCCCCCCHHHHHHHHHHc----CchHHHHHHHhcCCChhHHhcCChhhhccccCCCChHHHHHHHHHHHHHHhhc
Q psy4858 500 HKLSQQVPLWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKMA 574 (979)
Q Consensus 500 ~kl~~~V~~WS~EDVa~WL~~I----GL~eY~~~F~en~IDG~~LL~LTeeDL~~dLGI~n~ghRKrLlreI~~Lk~~~ 574 (979)
-.+..+...||.++|..||+-. .|+.. .+..-.++|..|+.|+.+|+....+ ..| ..|...++.|....
T Consensus 6 ~~~p~dP~~Wt~~~V~~Wl~w~~~~f~l~~~--~~~~f~~~G~~Lc~m~~~~F~~~~p--~~G--~iL~~hl~~l~k~~ 78 (241)
T 2qb0_B 6 AHLRLQPIYWSRDDVAQWLKWAENEFSLRPI--DSNTFEMNGKALLLLTKEDFRYRSP--HSG--DVLYELLQHILKQA 78 (241)
T ss_dssp GGGGSCGGGCCHHHHHHHHHHHHHHTTCSCC--CTTTTCSCHHHHTTCCHHHHHHHCT--TTH--HHHHHHHHHHHHTC
T ss_pred CCCCCChhhCCHHHHHHHHHHHHHhcCCCCC--CHHhcCCChHHHHHcCHHHHHhhcC--Ccc--hhhHHHHHHHHHhh
Confidence 3445578899999999999844 45432 2334459999999999999874333 233 56778888776654
No 196
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=80.02 E-value=10 Score=47.40 Aligned_cols=57 Identities=19% Similarity=0.111 Sum_probs=44.3
Q ss_pred hhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 307 ECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 307 l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
+..+.|+.+.|-++.||..+ +.|+.+.+ ++.-|.+|....|+.||..|+.||+.+..
T Consensus 620 L~~~~d~~VR~gAalALGli--~aGn~~~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIA--CAGKGLQS------AIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHH--TSSSCCHH------HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHhcCCHHHHHHHHHHHHHh--ccCCCcHH------HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 44677999999999999999 45444322 34578888888888999999999997664
No 197
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=79.40 E-value=2.5 Score=42.79 Aligned_cols=142 Identities=16% Similarity=0.117 Sum_probs=85.6
Q ss_pred HHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhcc-ccccccchhhhhhhHhhhhhhcChhhHHHHh
Q psy4858 218 LISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCT-KNINSVEHSRVGTGILEHLFKHSEGTCSDVI 296 (979)
Q Consensus 218 Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~t-k~~~~~~~~r~~~giL~~lfkHSe~t~~~lV 296 (979)
+.+.+.+.+-..+..|+..|..++...-+ +...-+..+++...+.- +. ++..+...+..+|..|.++-.......+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~--~~~~~~~~i~~~L~~~l~kd-~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPK--LENGEYGALVSALKKVITKD-SNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSS--BCCCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCC--CCCCCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 55667788888888888888888643001 11111334444333322 22 3456666667777777544332222221
Q ss_pred hcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhc
Q psy4858 297 GLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371 (979)
Q Consensus 297 ~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Las 371 (979)
. --+++|+..++...+.+...|..||.++.-..+. ..++ +-|.....+.+..+|..++..|..++.
T Consensus 97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~---~~ll-----~~l~~~l~~~~~~vr~~~l~~l~~~l~ 162 (242)
T 2qk2_A 97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL---EAQQ-----ESIVESLSNKNPSVKSETALFIARALT 162 (242)
T ss_dssp H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH---HHHH-----HHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH---HHHH-----HHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 1 2467899999999999999999999999554321 2222 335555566677888888777776543
No 198
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=78.98 E-value=4.6 Score=50.54 Aligned_cols=147 Identities=13% Similarity=0.116 Sum_probs=95.2
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchh---hHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChh-
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENR---DHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEG- 290 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr---~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~- 290 (979)
+..|+..+.++|.+++..|..-|.+.+..+.- +...+.-+..|++.. .. ++.++.+.+.-+|.++.++..+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L----~d-~~~~vR~~A~~~L~~l~~~~~~~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----ED-KNGEVQNLAVKCLGPLVSKVKEY 82 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----TC-SSHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh----cC-CCHHHHHHHHHHHHHHHHhCCHH
Confidence 56788899999999999998777777643211 111112244555555 22 3456666677788888765433
Q ss_pred hHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchh----HHHHHhcCCcchhccccc-cCCccchhhHHHH
Q psy4858 291 TCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAEN----QEAMIKRKVPVWLFPLAF-HNDDNIKYYACLA 365 (979)
Q Consensus 291 t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~----q~~mi~~~~~~wL~~La~-s~dd~vr~~A~lA 365 (979)
....+ ++.|+..+...++.+..-|+.+|+.++-+-++.. ...-..+.+...|+..+. +.+..+|..|+.+
T Consensus 83 ~~~~i-----~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 83 QVETI-----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp HHHHH-----HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 23333 3478888888888887778899999875554431 111234456677777776 4667899999999
Q ss_pred HHHHhc
Q psy4858 366 IAVLVA 371 (979)
Q Consensus 366 la~Las 371 (979)
+..++.
T Consensus 158 l~~~~~ 163 (1230)
T 1u6g_C 158 MADMLS 163 (1230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998884
No 199
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=76.83 E-value=4.1 Score=47.96 Aligned_cols=139 Identities=12% Similarity=0.059 Sum_probs=89.0
Q ss_pred hHHHHHhh-cCCChhHHhHHHHHHHHhhccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhc-----
Q psy4858 215 MDLLISNC-VEKDLDLQFSSARLLEQCLTTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKH----- 287 (979)
Q Consensus 215 ld~Li~~~-~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkH----- 287 (979)
+.-++..+ .++|.+++..|-.-|+++-.. | ..| +..++.+... ...+..+-..+.-+|.|+++.
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-~-----~~~~~~~l~~il~~---~~~~~~vR~~A~~~lk~~i~~~w~~~ 76 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSND-N-----FLQFAGLSSQVLID---ENTKLEGRILAALTLKNELVSKDSVK 76 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-C-----HHHHHHHHHHHHTC---TTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhh-C-----HHHHHHHHHHHHhC---CCCChHHHHHHHHHHHhhccCcChHH
Confidence 34456667 888988998888888886421 1 123 4556666532 112223333334456666432
Q ss_pred ------------ChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccC-
Q psy4858 288 ------------SEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHN- 354 (979)
Q Consensus 288 ------------Se~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~- 354 (979)
+++.+..|. +.|+..+...++.+...++.+|+.++....+.+ -++.+...|+.++.+.
T Consensus 77 ~~~~~~~~~~~l~~~~~~~ik-----~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~----~w~~ll~~L~~~l~~~~ 147 (861)
T 2bpt_A 77 TQQFAQRWITQVSPEAKNQIK-----TNALTALVSIEPRIANAAAQLIAAIADIELPHG----AWPELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT----CCHHHHHHHHHHTSTTS
T ss_pred HHHHHHhHhhhCCHHHHHHHH-----HHHHHHHCCCchHHHHHHHHHHHHHHHhhCccc----ccHHHHHHHHHHHhcCC
Confidence 444555544 378888888899998999999999977754431 1344556777777777
Q ss_pred CccchhhHHHHHHHHhc
Q psy4858 355 DDNIKYYACLAIAVLVA 371 (979)
Q Consensus 355 dd~vr~~A~lAla~Las 371 (979)
++.+|..|+.++..++.
T Consensus 148 ~~~~r~~al~~l~~l~~ 164 (861)
T 2bpt_A 148 PENVKRASLLALGYMCE 164 (861)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77888888777777764
No 200
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=76.76 E-value=3.7 Score=36.26 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=39.8
Q ss_pred chhHHHHHhcCCCchhhhccCHHHHHHHcCCCcchhHHHHHHHHHhh
Q psy4858 596 SIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642 (979)
Q Consensus 596 ~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~Hr~rIl~AIk~l 642 (979)
.-|+.+|..+.+|.++|+.|+.+.|.+ +||+ -+...+|+..++..
T Consensus 20 ~rYA~~F~~~ri~e~mL~Dl~~~~Lr~-LGi~-eGDIIrVmk~l~~k 64 (72)
T 3idw_A 20 QRYTINFDREQLTEDMMPDINNSMLRT-LGLR-EGDIVRVMKHLDKK 64 (72)
T ss_dssp HHHHHHHHHTTCCGGGGGGCCHHHHHH-TTCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHhhCCHHHHHH-cCCc-hhhHHHHHHHHHHH
Confidence 479999999999999999999999985 9997 68889998888753
No 201
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.95 E-value=5.7 Score=49.69 Aligned_cols=150 Identities=9% Similarity=0.112 Sum_probs=88.0
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhH--
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTC-- 292 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~-- 292 (979)
+..|++.+.+++.++|..|+.+|.++...- .+. .+..++...+.+-.. .+..+...+.-+|..+..+.....
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-~~~----~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEY----QVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-CHH----HHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-CHH----HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 455777778899999999999999987421 111 133344333333222 112332223335555544433220
Q ss_pred ---HHHhhcCchHHHHhhhc-cCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHH
Q psy4858 293 ---SDVIGLGGLDTVLFECR-KNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAV 368 (979)
Q Consensus 293 ---~~lV~~Ggl~~Ll~l~r-~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~ 368 (979)
..-.-..-++.|+..+. +.++.+...|..+|.++.-..+..-.. .-..+..-|+++..+.+..+|..|+-||+.
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~ 201 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGH 201 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 01111234568888888 578899999999999986332211000 112334567777777777999999999999
Q ss_pred Hhcc
Q psy4858 369 LVAN 372 (979)
Q Consensus 369 Lasn 372 (979)
++..
T Consensus 202 l~~~ 205 (1230)
T 1u6g_C 202 LVMS 205 (1230)
T ss_dssp HTTT
T ss_pred HHHh
Confidence 9865
No 202
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=74.80 E-value=0.79 Score=40.82 Aligned_cols=25 Identities=28% Similarity=0.773 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCC
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRV 535 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~I 535 (979)
..+.|.||+.-||++|++.|.+..+
T Consensus 21 A~eAC~WLRaaGFPQYAqlyed~qF 45 (81)
T 2h80_A 21 AKEACDWLRAAGFPQYAQLYEDSQF 45 (81)
T ss_dssp HHHHHHHHHHTTCHHHHHTTTTTCC
T ss_pred HHHHHHHHHHcCCcHHHHHhhcccc
Confidence 5688999999999999999977653
No 203
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=74.03 E-value=4.6 Score=47.62 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=97.9
Q ss_pred HHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhcc----chhhHHHhhchhHHHhhhhhc
Q psy4858 189 QKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT----ENRDHVVENGLDKVVRVACVC 264 (979)
Q Consensus 189 ~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~----~Nr~~Iv~~Gl~~lv~la~~~ 264 (979)
.+-|. .+.......|+. .|++.+.+++..+ ..++.+|..++.. +.+.. -+..++...
T Consensus 77 ~~~w~------~l~~~~~~~ik~-----~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~----ll~~l~~~l--- 137 (876)
T 1qgr_A 77 QQRWL------AIDANARREVKN-----YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPE----LIPQLVANV--- 137 (876)
T ss_dssp HHHHH------TSCHHHHHHHHH-----HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTT----HHHHHHHHH---
T ss_pred Hhhhc------cCCHHHHHHHHH-----HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHH----HHHHHHHHH---
Confidence 45673 345566677764 3777788888888 8888999988632 11111 145555555
Q ss_pred ccccc-ccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhc
Q psy4858 265 TKNIN-SVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKR 341 (979)
Q Consensus 265 tk~~~-~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~ 341 (979)
.+.+ +..+...+..+|..+++.....-..-.-..-++.++..++.. +.++...|..+|.+++-+-+..-...+...
T Consensus 138 -~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 216 (876)
T 1qgr_A 138 -TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH 216 (876)
T ss_dssp -HCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH
T ss_pred -hCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3321 456667778888888765421111111122345667777776 578888999999998755321101111111
Q ss_pred CCcchhccccccCCccchhhHHHHHHHHhcc
Q psy4858 342 KVPVWLFPLAFHNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 342 ~~~~wL~~La~s~dd~vr~~A~lAla~Lasn 372 (979)
.+...|+.+..+.++.+|..||-++..++..
T Consensus 217 ~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 217 FIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (876)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 2344455556666678898888888888764
No 204
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=73.83 E-value=5.8 Score=39.70 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=58.3
Q ss_pred CeeEecccCC--ccchHHHHHHHHHhc--CCceEeeccc-C--------C---CC--cchHHHH----HHHHhCCEEEEE
Q psy4858 659 DVFISYRRSN--GSQLASLLKVHLELR--QFKVFIDVER-L--------E---AG--KFDNNLL----QSIKQARNFLLV 716 (979)
Q Consensus 659 DVFISYRR~D--g~~~As~L~e~Le~~--G~rVFiD~~~-I--------e---~G--df~~~L~----~aI~~SrvfIvV 716 (979)
.||+.=.--. .......+.+.|+.. |+.||.=.+. . + .+ +|...|. +.|+.|+++|++
T Consensus 9 kIYLAGP~F~~~~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ 88 (167)
T 1s2d_A 9 KIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFL 88 (167)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEE
Confidence 4555433222 245667888999999 8899863331 1 1 12 2555554 479999999999
Q ss_pred ECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEE
Q psy4858 717 LTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPI 754 (979)
Q Consensus 717 LSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPV 754 (979)
+.+.-. ++=+..||..|...||+||-+
T Consensus 89 ldg~~~-----------D~GTa~EiGyA~algKPVv~l 115 (167)
T 1s2d_A 89 YDMDQL-----------DDGSAFXIGFMRAMHKPVILV 115 (167)
T ss_dssp EESSSC-----------CHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCC-----------CCCceeehhhHhhCCCeEEEE
Confidence 886432 345888999999999999888
No 205
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=71.73 E-value=60 Score=36.08 Aligned_cols=239 Identities=13% Similarity=0.029 Sum_probs=110.1
Q ss_pred HHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhh
Q psy4858 218 LISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIG 297 (979)
Q Consensus 218 Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~ 297 (979)
.+++++++|.++|--.=-.++++... .+..| -+++-..+--.. ++.-+-.++...|.++ .+++.-..|.+
T Consensus 73 v~kl~~s~d~~lKrLvYLyl~~~~~~------~~e~i-Lv~Nsl~kDl~~-~N~~iR~lALRtL~~I--~~~~m~~~l~~ 142 (355)
T 3tjz_B 73 MTKLFQSNDPTLRRMCYLTIKEMSCI------AEDVI-IVTSSLTKDMTG-KEDSYRGPAVRALCQI--TDSTMLQAIER 142 (355)
T ss_dssp HHGGGGCCCHHHHHHHHHHHHHHTTT------SSCGG-GGHHHHHHHHHS-SCHHHHHHHHHHHHHH--CCTTTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhCCC------HHHHH-HHHHHHHhhcCC-CcHhHHHHHHHHHhcC--CCHHHHHHHHH
Confidence 45677777777776554455555532 11112 122222221122 2223334445566666 45555666665
Q ss_pred cCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcchHHHH
Q psy4858 298 LGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEA 377 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn~ei~~ 377 (979)
.+-..+...+|-|-+-|+.+.+.| +..+. .+++ +...-+-.+..+.++.|+|+|..++..+..+...
T Consensus 143 -----~lk~~L~d~~pyVRk~A~l~~~kL--~~~~p---e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~-- 209 (355)
T 3tjz_B 143 -----YMKQAIVDKVPSVSSSALVSSLHL--LKCSF---DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL-- 209 (355)
T ss_dssp -----HHHHHHTCSSHHHHHHHHHHHHHH--TTTCH---HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH--
T ss_pred -----HHHHHcCCCCHHHHHHHHHHHHHH--hccCH---HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH--
Confidence 678888888999999999999988 43222 2444 4444455556666678899887777777664322
Q ss_pred HHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhh-----cc----cCCCchhhhhhhhccccchHHHHHHHHHHhh
Q psy4858 378 AVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLA-----HA----HGQNRNWLQKLVPVLSSKREEARNLAAFHFC 448 (979)
Q Consensus 378 ~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~-----~~----~g~~~g~L~~LvplL~s~~eE~q~lAafhl~ 448 (979)
++. .+|..|........|+.+.+. .. ......+.+.|.++|...+.-...=|+-.++
T Consensus 210 a~~--------------kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~ 275 (355)
T 3tjz_B 210 AVS--------------KMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIV 275 (355)
T ss_dssp HHH--------------HHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHT
T ss_pred HHH--------------HHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 211 122333222222233322221 11 1234568899999999866555444444443
Q ss_pred HHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhhccCcccC
Q psy4858 449 MEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPH 500 (979)
Q Consensus 449 ~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~~gEevp~ 500 (979)
. .. . -....+ .-++..|..+.++++....-.|.+.|..+...-|.
T Consensus 276 ~-l~--~--~~~~~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 276 N-LP--G--CSAKEL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp C------------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred h-cc--C--CCHHHH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 1 11 0 011111 24566676666655443333355555555444443
No 206
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=71.41 E-value=7.6 Score=38.44 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=54.4
Q ss_pred cchHHHHHHHHHhcCC----ceEeecccC---------CC---C-cchHHHH----HHHHhCCEEEEEECcccchhhccc
Q psy4858 670 SQLASLLKVHLELRQF----KVFIDVERL---------EA---G-KFDNNLL----QSIKQARNFLLVLTPKALDRCMED 728 (979)
Q Consensus 670 ~~~As~L~e~Le~~G~----rVFiD~~~I---------e~---G-df~~~L~----~aI~~SrvfIvVLSp~~l~~~~~~ 728 (979)
......+...|+..|. .||.-.+.- +. + .|...|. +.|+.|+++|.++...-
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~------- 90 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE------- 90 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-------
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-------
Confidence 3456678888998886 787744321 11 1 2555554 47999999999997532
Q ss_pred CCCcCChhHHHHHHHHHhcCCeEEEEecC
Q psy4858 729 NESECKDWVHREIVAALQSGCNIIPILDN 757 (979)
Q Consensus 729 ~i~~~SdWV~rEL~~Al~~~k~IIPVl~~ 757 (979)
.++=+..||..|...||+||-+..+
T Consensus 91 ----~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 91 ----EDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred ----CCccHHHHHHHHHHCCCeEEEEEcC
Confidence 2345788999999999999888643
No 207
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=70.57 E-value=2.4 Score=38.56 Aligned_cols=25 Identities=24% Similarity=0.660 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCchHHHHHHHhcCC
Q psy4858 511 TEDVREWVRQIGFAEYANNFVESRV 535 (979)
Q Consensus 511 ~EDVa~WL~~IGL~eY~~~F~en~I 535 (979)
..+.|.||+.-||++|++.|.++.+
T Consensus 23 A~eAC~WLRaaGFPQYAqlyed~~F 47 (91)
T 2dky_A 23 AKEACDWLRATGFPQYAQLYEDFLF 47 (91)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHTTCC
T ss_pred HHHHHHHHHHcCChHHHHhcccccc
Confidence 5688999999999999999987753
No 208
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=70.21 E-value=12 Score=43.93 Aligned_cols=157 Identities=9% Similarity=0.030 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccc----hhhHHHhhchhHHHhhhhhccccccccchhhhh
Q psy4858 202 GYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTE----NRDHVVENGLDKVVRVACVCTKNINSVEHSRVG 277 (979)
Q Consensus 202 ~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~----Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~ 277 (979)
.......|+ +.|+..+.+++..++..++.+|..+...+ ++..+ +..|+..+ .+.++..+...+
T Consensus 89 ~~~~~~~ik-----~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~l----l~~L~~~l----~~~~~~~~r~~a 155 (861)
T 2bpt_A 89 SPEAKNQIK-----TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPEL----MKIMVDNT----GAEQPENVKRAS 155 (861)
T ss_dssp CHHHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHH----HHHHHHHT----STTSCHHHHHHH
T ss_pred CHHHHHHHH-----HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHH----HHHHHHHH----hcCCCHHHHHHH
Confidence 334445555 46777788899999999999999986321 22211 45555555 332244555666
Q ss_pred hhHhhhhhhcChhhH---HHHhhcCchHHHHhhhccC--ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccc
Q psy4858 278 TGILEHLFKHSEGTC---SDVIGLGGLDTVLFECRKN--DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAF 352 (979)
Q Consensus 278 ~giL~~lfkHSe~t~---~~lV~~Ggl~~Ll~l~r~~--d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~ 352 (979)
..+|..++++-.... ... -..-++.++..+... ++++...++.+|.++.-+.+..-...+.+.-+..-|..++.
T Consensus 156 l~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 234 (861)
T 2bpt_A 156 LLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ 234 (861)
T ss_dssp HHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc
Confidence 677777766432210 000 011244666677776 78899999999998854432110001111123344555666
Q ss_pred cCCccchhhHHHHHHHHhcc
Q psy4858 353 HNDDNIKYYACLAIAVLVAN 372 (979)
Q Consensus 353 s~dd~vr~~A~lAla~Lasn 372 (979)
+.++.+|..||-++..++..
T Consensus 235 ~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 235 AEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 67778898888888877754
No 209
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=65.53 E-value=55 Score=38.49 Aligned_cols=120 Identities=10% Similarity=0.121 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHhcCC--------hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhcccccc
Q psy4858 198 GHEIGYSLCNTLRNCGG--------MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNIN 269 (979)
Q Consensus 198 ~~~~~~~lc~~ir~~Gg--------ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~ 269 (979)
|+++-++...+|...+. ...|.+.+.+++.++|+.|-..|..++....-..++..=...++... +...
T Consensus 306 ~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L----~~d~ 381 (621)
T 2vgl_A 306 KNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL----KTER 381 (621)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH----TTCC
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh----ccCC
Confidence 44667777777766543 45566777789999999999999888754321123333344555544 3225
Q ss_pred ccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcc
Q psy4858 270 SVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328 (979)
Q Consensus 270 ~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl 328 (979)
|..+.+.+.-+|-.|. ++.|...|++ .|+.-++..|.+..+.+..++..||.
T Consensus 382 d~~Ir~~aL~lL~~l~--~~~Nv~~Iv~-----eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 382 DVSVRQRAVDLLYAMC--DRSNAQQIVA-----EMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHc--ChhhHHHHHH-----HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 6788888888888883 5678888887 88888889999999999999999963
No 210
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.44 E-value=29 Score=36.98 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=64.6
Q ss_pred hHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhh
Q psy4858 228 DLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFE 307 (979)
Q Consensus 228 ~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l 307 (979)
+.++..=+=+.+++...+-+ ...+=|+.++.++ -. .+.++.|...+.|+-.|+-..+-+.+++. .|.++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~----~~-~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~-----~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE-LAEEFLESVLSLA----HD-SNMEVRKQVVAFVEQVCKVKVELLPHVIN-----VVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGG----GC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhc----cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 45554433344433222222 2333356666776 22 45799999999999999988888888776 99999
Q ss_pred hccCChhHHHHHHHhhhhhcccC
Q psy4858 308 CRKNDIETLRHCAGALANLSLYG 330 (979)
Q Consensus 308 ~r~~d~~~lr~ca~ALaNlAl~~ 330 (979)
|+..|+.++++|-.+.+++ |-
T Consensus 99 l~d~d~~V~K~~I~~~~~i--Y~ 119 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSI--YK 119 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHH--HH
T ss_pred HcCCCHHHHHHHHHHHHHH--HH
Confidence 9988999999999999998 65
No 211
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=59.37 E-value=12 Score=41.58 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=65.4
Q ss_pred chhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhcccc
Q psy4858 272 EHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 272 ~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La 351 (979)
+.-|.+.==|..+|.-..+=-.+-|+.||+..|+.....++-.++-|+-+||.+|-.|..-- ..-|.....+.||+.+.
T Consensus 133 ~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~~~fI~~lyslv 211 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAHSDTIQWLYTLC 211 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCCHHHHHHHHHHH
Confidence 44555333444545545555788999999999999999999999999999999997773111 01223667889999999
Q ss_pred ccCCccchhhHHHHH
Q psy4858 352 FHNDDNIKYYACLAI 366 (979)
Q Consensus 352 ~s~dd~vr~~A~lAl 366 (979)
.+.+..| +..+|+|
T Consensus 212 ~s~~~~V-~k~AL~L 225 (339)
T 3dad_A 212 ASLSRLV-VKTALKL 225 (339)
T ss_dssp GCSCHHH-HHHHHHH
T ss_pred cCccHHH-HHHHHHH
Confidence 8755444 4443443
No 212
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=57.31 E-value=76 Score=30.22 Aligned_cols=121 Identities=19% Similarity=0.328 Sum_probs=74.4
Q ss_pred CCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCC-cchHHHHH---HHHhCCEEEEEECcccchhhcccCCCcC
Q psy4858 658 LDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAG-KFDNNLLQ---SIKQARNFLLVLTPKALDRCMEDNESEC 733 (979)
Q Consensus 658 yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~G-df~~~L~~---aI~~SrvfIvVLSp~~l~~~~~~~i~~~ 733 (979)
..|-+=|+..|...-..+| +.++..|..| +.++.- +|.++|.+ ..-+-+++++|-+.+
T Consensus 27 vrvvllysdqdekrrrerl-eefekqgvdv----rtvedkedfrenireiwerypqldvvvivttdd------------- 88 (162)
T 2l82_A 27 VRVVLLYSDQDEKRRRERL-EEFEKQGVDV----RTVEDKEDFRENIREIWERYPQLDVVVIVTTDD------------- 88 (162)
T ss_dssp CEEEEEECCSCHHHHHHHH-HHHHTTTCEE----EECCSHHHHHHHHHHHHHHCTTCCEEEEEECCC-------------
T ss_pred eEEEEEecCchHHHHHHHH-HHHHHcCCce----eeeccHHHHHHHHHHHHHhCCCCcEEEEEecCc-------------
Confidence 3566667776643333333 4466667644 444444 47777655 455678777666544
Q ss_pred ChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHHhhhccccccc-ccHHHHHHHHHHHHhhc
Q psy4858 734 KDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIH-DYQDACVDKLERFMRGE 800 (979)
Q Consensus 734 SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w~~-~yq~a~IdkIvr~I~g~ 800 (979)
+.|...=|..|-+.|..+.-|+.+- +. +-...-+.-..-.|+.... .+.++.|+.+-+|++..
T Consensus 89 kewikdfieeakergvevfvvynnk---dd-drrkeaqqefrsdgvdvrtvsdkeelieqvrrfvrkv 152 (162)
T 2l82_A 89 KEWIKDFIEEAKERGVEVFVVYNNK---DD-DRRKEAQQEFRSDGVDVRTVSDKEELIEQVRRFVRKV 152 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECS---CH-HHHHHHHHHHCCSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCC---Cc-hhHHHHHHHhhhcCceeeecCCHHHHHHHHHHHHHHh
Confidence 5899999999999999998887662 11 1111112112224655443 45788899998888765
No 213
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=54.98 E-value=12 Score=41.76 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=61.4
Q ss_pred cCchHHHHhhhcc-----------CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHH
Q psy4858 298 LGGLDTVLFECRK-----------NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAI 366 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~-----------~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAl 366 (979)
.+|+.+|+..+.+ .|.+.+..|..+|-.| |+....-...+-.+.++.||+.+..+....+|..|.=-|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal-mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH-TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH-hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5677777777652 2567777766666555 222233334566888999999999998888888887777
Q ss_pred HHHhcchH---HHHHHHhhhhHHH
Q psy4858 367 AVLVANTE---IEAAVLKSVQEAA 387 (979)
Q Consensus 367 a~Lasn~e---i~~~~~~~~~~~~ 387 (979)
+.+|--.+ .+..||.|+.+.+
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~ 210 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERA 210 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHH
Confidence 77776654 4677788887744
No 214
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=54.28 E-value=1.2e+02 Score=32.77 Aligned_cols=126 Identities=10% Similarity=0.010 Sum_probs=71.2
Q ss_pred ChhHHhHHHHHHHHhhc-cchhhHHHhhchhHHHhhhhhcc-ccccccchhhhhhhHhhhhh----hc-ChhhHHHHhhc
Q psy4858 226 DLDLQFSSARLLEQCLT-TENRDHVVENGLDKVVRVACVCT-KNINSVEHSRVGTGILEHLF----KH-SEGTCSDVIGL 298 (979)
Q Consensus 226 ~~~~q~~aa~~Le~~~~-~~Nr~~Iv~~Gl~~lv~la~~~t-k~~~~~~~~r~~~giL~~lf----kH-Se~t~~~lV~~ 298 (979)
+..-+.-+.|++.||.. +..|..+.... ..++.++..+. ...+ .++-.++.++-|+= +. ..+...+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~-~~il~~~~~~~~~~nk--nl~iA~ATl~~NlAv~~~~~~~~~~~~~---- 233 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQR-ESLMSHAIELKSGSNK--NIHIALATLALNYSVCFHKDHNIEGKAQ---- 233 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTH-HHHHHHHHGGGSSCCH--HHHHHHHHHHHHHHHHHHHSCCHHHHHH----
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHH-HHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHhhcCCchHHHH----
Confidence 45578999999999964 57888887653 33444443321 2223 33333445555550 11 1111222
Q ss_pred CchHHHHhhhcc-CChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCc-cchh
Q psy4858 299 GGLDTVLFECRK-NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD-NIKY 360 (979)
Q Consensus 299 Ggl~~Ll~l~r~-~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd-~vr~ 360 (979)
-+.++...++. .|+|.++++..||.||. |++.+.++..-.-++..|+-.++..+.+ +|..
T Consensus 234 -ll~~l~~il~~~~d~EalyR~LvALGtL~-~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~ 295 (304)
T 3ebb_A 234 -CLSLISTILEVVQDLEATFRLLVALGTLI-SDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE 295 (304)
T ss_dssp -HHHHHHHHHTTCCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHHHHH-hCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence 22344444443 49999999999999996 4444433333345666677777765333 5443
No 215
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=50.53 E-value=25 Score=36.93 Aligned_cols=111 Identities=14% Similarity=0.027 Sum_probs=57.1
Q ss_pred ChHHHHHhhcCCChhHHhHHHHHH-----HHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcC
Q psy4858 214 GMDLLISNCVEKDLDLQFSSARLL-----EQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHS 288 (979)
Q Consensus 214 gld~Li~~~~s~~~~~q~~aa~~L-----e~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHS 288 (979)
+.+.|..++..++..|+..+|.-| ..++.+++ ..|+..... ++ ...+|..|.++.
T Consensus 75 ~~~~l~~L~~D~~~~VR~~aA~~L~~~~L~~ll~D~d--~~VR~~aA~--~l----------------~~~~L~~L~~D~ 134 (244)
T 1lrv_A 75 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDED--REVRITVAD--RL----------------PLEQLEQMAADR 134 (244)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSC--HHHHHHHHH--HS----------------CTGGGGGGTTCS
T ss_pred CHHHHHHHccCcCHHHHHHHHHHCCHHHHHHHHcCCC--HHHHHHHHH--hC----------------CHHHHHHHHcCC
Confidence 356777788888888888887532 22222211 111111000 00 112445554433
Q ss_pred -hhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHH
Q psy4858 289 -EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363 (979)
Q Consensus 289 -e~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~ 363 (979)
.+.|..+++.-+.+.+..+++-.|+.|.+.++.++ .+.+|..++...+..||..|+
T Consensus 135 d~~VR~~aA~~l~~~~l~~l~~D~d~~VR~~aa~~l-------------------~~~ll~~ll~D~d~~VR~aaa 191 (244)
T 1lrv_A 135 DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRL-------------------PEESLGLMTQDPEPEVRRIVA 191 (244)
T ss_dssp SHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHS-------------------CGGGGGGSTTCSSHHHHHHHH
T ss_pred CHHHHHHHHHhcCHHHHHHHHcCCCHHHHHHHHHcC-------------------CHHHHHHHHcCCCHHHHHHHH
Confidence 24455555544455555666666777777776652 134555565666666666554
No 216
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=50.01 E-value=37 Score=38.38 Aligned_cols=90 Identities=14% Similarity=0.308 Sum_probs=66.4
Q ss_pred hHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhh
Q psy4858 228 DLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFE 307 (979)
Q Consensus 228 ~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l 307 (979)
+.|+..=+=+.+++...+.+ ...+=|+.++.++ -. .++++.|.+.+.|+-.|+-..+.+.+++. .|.++
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~----~d-~~~~vRk~~a~FieEa~~~~~el~~~~l~-----~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-LLDNFLDEIIAFQ----AD-KSIEVRKFVIGFIEEACKRDIELLLKLIA-----NLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGG----GC-SCHHHHHHHHHHHHHHHHHCGGGHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhc----cC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 45555544455543222222 3334478888888 33 35799999999999999988888777766 99999
Q ss_pred hccCChhHHHHHHHhhhhhcccC
Q psy4858 308 CRKNDIETLRHCAGALANLSLYG 330 (979)
Q Consensus 308 ~r~~d~~~lr~ca~ALaNlAl~~ 330 (979)
++..|+.|+++|..|.+|+ |-
T Consensus 109 L~d~d~~V~K~~I~~~tsl--Yp 129 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL--YK 129 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH--HH
T ss_pred HcCCCHHHHHHHHHHHHHH--HH
Confidence 9989999999999999998 64
No 217
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.80 E-value=19 Score=33.54 Aligned_cols=45 Identities=16% Similarity=0.281 Sum_probs=36.6
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcC
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECG 625 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cg 625 (979)
...+..+..||...+ |+.|+-.. -.++++..|-.||.+||+..||
T Consensus 33 ~Ssp~EV~~WL~~kg--FS~~tv~~-Lg~ltGaqLl~Ltk~eL~~vCg 77 (99)
T 2e8m_A 33 DSTPEDVKTWLQSKG--FNPVTVNS-LGVLNGAQLFSLNKDELRTVCP 77 (99)
T ss_dssp TCCTTHHHHHHHHHT--CCHHHHHH-TSSSCHHHHHHCCHHHHHHHCT
T ss_pred CCCHHHHHHHHHHcC--CCHHHHHH-HcCCCHHHHHcCCHHHHHHHCC
Confidence 345667899999988 99885442 1567999999999999999999
No 218
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=49.26 E-value=89 Score=33.92 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhc---h
Q psy4858 178 PAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENG---L 254 (979)
Q Consensus 178 ~~~~~~~~~~~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G---l 254 (979)
|...--..+++++.|.-+. |+++-...++.|. +.+...+.+++..+|..+|.++=|+....++..-.... +
T Consensus 162 p~n~ml~lR~l~NlF~~~~-g~~~l~~~~~~il-----~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll 235 (304)
T 3ebb_A 162 PANQLLALRTFCNCFVGQA-GQKLMMSQRESLM-----SHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCL 235 (304)
T ss_dssp HHHHHHHHHHHHHGGGSHH-HHHHHHHTHHHHH-----HHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCch-hHHHHHHHHHHHH-----HHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Confidence 4444556777888887666 5555334444443 34555556778899999999999996432221101111 3
Q ss_pred hHHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC-ChhHHHHHHHhhhhh
Q psy4858 255 DKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN-DIETLRHCAGALANL 326 (979)
Q Consensus 255 ~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~-d~~~lr~ca~ALaNl 326 (979)
..+..+. ...+|.|..-...-+|.+| .+.+....++.+.=+++..+.-.++. .+.-...|+..|.++
T Consensus 236 ~~l~~il----~~~~d~EalyR~LvALGtL-~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 236 SLISTIL----EVVQDLEATFRLLVALGTL-ISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHHHH----TTCCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHHHH----hccCCHHHHHHHHHHHHHH-HhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 3444444 3346778888888899999 56677778888776777666666665 666677777776554
No 219
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=49.22 E-value=70 Score=34.43 Aligned_cols=177 Identities=12% Similarity=0.041 Sum_probs=107.0
Q ss_pred cCchHHHHhhhccCChhHHHHHHHhhhhh--cccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHHhcc---
Q psy4858 298 LGGLDTVLFECRKNDIETLRHCAGALANL--SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVAN--- 372 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl--Al~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~Lasn--- 372 (979)
.+.+..|+.++...|+.++..+--+|-++ .|++ . -..++=+++-.-++.++.+.|+++-.+|.-+|..|..+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~--~-l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADS--D-LRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCH--H-HHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc--c-ccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34567888889889999999999999888 2333 1 12333333445577788999999999999999999877
Q ss_pred --hHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCchhhhhhhhccccchHHHHHHHHHHhhHH
Q psy4858 373 --TEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHFCME 450 (979)
Q Consensus 373 --~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~g~L~~LvplL~s~~eE~q~lAafhl~~e 450 (979)
+-|... .++|.+ +.++|.--+....+.. ..-+. ...-.+....-+..|+.|++.+.+.+|..-| .|
T Consensus 109 ~~~~y~Kl-~~aL~d--lik~~~~il~~eaae~-------Lgklk-v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L-~e 176 (265)
T 3b2a_A 109 GSKTFLKA-AKTLVS--LLESPDDMMRIETIDV-------LSKLQ-PLEDSKLVRTYINELVVSPDLYTKVAGFCLF-LN 176 (265)
T ss_dssp CHHHHHHH-HHHHHH--HTTSCCHHHHHHHHHH-------HHHCC-BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHH-HH
T ss_pred CHHHHHHH-HHHHHH--HhcCCCchHHHHHHHH-------hCcCC-cccchHHHHHHHHHHHhCCChhHHHHHHHHH-HH
Confidence 344444 568888 7777663332222111 01010 0111333555666667888888866655544 56
Q ss_pred hhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHhh
Q psy4858 451 AGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493 (979)
Q Consensus 451 a~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe~ 493 (979)
-+.++... ..+. +.+..+..+..+.+..-.++|-.+|..
T Consensus 177 ia~~S~D~--~i~~--~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 177 MLNSSADS--GHLT--LILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp HGGGCSSC--CCGG--GTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred hhcccCCH--HHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 65433322 2221 233335566667776666666666654
No 220
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=48.58 E-value=10 Score=39.22 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=58.0
Q ss_pred cCchHHHHhhhccC-----------ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHH
Q psy4858 298 LGGLDTVLFECRKN-----------DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAI 366 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~-----------d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAl 366 (979)
.||+++|+..+.+. |.+.+..|..+|--| |+....-+..+..+.++.+|+....+....+|..|.=-|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal-mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH-TSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH-hCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46777777666542 456666666666555 333333345566788899999999888888888775445
Q ss_pred HHHhcchH--H-HHHHHhhhhHHH
Q psy4858 367 AVLVANTE--I-EAAVLKSVQEAA 387 (979)
Q Consensus 367 a~Lasn~e--i-~~~~~~~~~~~~ 387 (979)
+.+|.-++ - +..||.||.+.+
T Consensus 121 ~~lc~~~~~~G~~~~VL~Al~~~~ 144 (233)
T 2f31_A 121 SALCILPQPEDMNERVLEAMTERA 144 (233)
T ss_dssp HHHHTCSSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCChHHHHHHHHHHHH
Confidence 55665543 4 777788887743
No 221
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=46.89 E-value=36 Score=33.74 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=55.7
Q ss_pred HHHHHhhc----cCCcchhHHHHHHHHHHhc-----CChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc
Q psy4858 186 DLMQKAWA----VPTHGHEIGYSLCNTLRNC-----GGMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG 253 (979)
Q Consensus 186 ~~~~~Awa----~p~~~~~~~~~lc~~ir~~-----Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G 253 (979)
++|++|=. -|.. ++.-.+||.|+.. .++..|.+-+..++..+|..|-.||+.|..- .=...|+...
T Consensus 18 ~~IekATs~~~~~~Dw--~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 18 QDVEKATNEYNTTEDW--SLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp HHHHHHTCTTCSSCCH--HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHcCCCCCCcCH--HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 67777755 3444 5677899999886 3566777888999999999999999999732 2234566566
Q ss_pred -hhHHHhhhh
Q psy4858 254 -LDKVVRVAC 262 (979)
Q Consensus 254 -l~~lv~la~ 262 (979)
++.+++|+.
T Consensus 96 Fl~el~~l~~ 105 (163)
T 1x5b_A 96 FATEVRAVIK 105 (163)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 788888883
No 222
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.51 E-value=16 Score=33.48 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCccChHHHhhhcCCCcchhHHHHH-hcCCCchhhhccCHHHHHH
Q psy4858 578 SKDVTNLNNFLLNLGQEFSIYTYSML-NAGVDKDSIKALSEEQLIC 622 (979)
Q Consensus 578 s~d~~~l~ewL~~IGpel~qYtys~l-~~GvD~~~L~~LT~edL~~ 622 (979)
..++..+.+||...| |.. -..+. .+.+||..+-.||++||+.
T Consensus 21 ~Wsp~~VadWLkk~g--~~~-cd~lv~Kh~IDG~~lL~LtE~Dlrk 63 (90)
T 2eap_A 21 GWDPDSLADYFKKLN--YKD-CEKAVKKYHIDGARFLNLTENDIQK 63 (90)
T ss_dssp TCCTTTHHHHHHHTT--CHH-HHHHHHHTTCCHHHHHTCCHHHHTT
T ss_pred ccCHHHHHHHHHHcC--Cch-HHHHHHHhccCchhhhcccHHHhcc
Confidence 356789999999988 655 44455 5779999999999999996
No 223
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.38 E-value=61 Score=32.37 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=57.6
Q ss_pred HHHHHHHhhc----cCCcchhHHHHHHHHHHhcC-----ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHh
Q psy4858 184 VNDLMQKAWA----VPTHGHEIGYSLCNTLRNCG-----GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVE 251 (979)
Q Consensus 184 ~~~~~~~Awa----~p~~~~~~~~~lc~~ir~~G-----gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~ 251 (979)
+-++|++|=. -|.. ++.-.+||.|+... ++..|.+.+.+++..+|..|-.||+.|..- .=...|+.
T Consensus 14 ~~~~IekATs~~l~~~Dw--~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas 91 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDW--EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK 91 (171)
T ss_dssp HHHHHHHHTCTTCSSCCH--HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCCcCH--HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 5567777755 3444 56779999999874 466788889999999999999999999732 23345666
Q ss_pred hc-hhHHHhhh
Q psy4858 252 NG-LDKVVRVA 261 (979)
Q Consensus 252 ~G-l~~lv~la 261 (979)
.. |..|++++
T Consensus 92 ~~Fl~eL~kl~ 102 (171)
T 1juq_A 92 FRFLNELIKVV 102 (171)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66 88888888
No 224
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=44.03 E-value=25 Score=32.83 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCccChHHHhhhcCCCcchhHHHHHhcCCCchhhhccCHHHHHHHcCCCcch
Q psy4858 579 KDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSI 630 (979)
Q Consensus 579 ~d~~~l~ewL~~IGpel~qYtys~l~~GvD~~~L~~LT~edL~~~cgItn~~ 630 (979)
..+..+..||...| |+.|+-.. =.++++..|-.||.+||+..|| .-++
T Consensus 24 Ssp~EV~~WL~~kg--FS~~tv~~-Lg~ltGaqLf~Ltk~eL~~vCg-~EG~ 71 (99)
T 1wwu_A 24 SGPDEVRAWLEAKA--FSPRIVEN-LGILTGPQLFSLNKEELKKVCG-EEGV 71 (99)
T ss_dssp CCHHHHHHHHHHHT--CCTTHHHH-TTSSCHHHHHTCCHHHHHHHHT-TTHH
T ss_pred CCHHHHHHHHHHcC--CCHHHHHH-HcCCCHHHHHcCCHHHHHHHCc-chhH
Confidence 34456689999988 99885442 2567999999999999999999 5554
No 225
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=41.94 E-value=35 Score=32.90 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=43.4
Q ss_pred eeEecccCCccchHHHHHHHHHhcCCceE-------------eecccCCCCc-c-h----HHHHHHHHhCCEEEEEECcc
Q psy4858 660 VFISYRRSNGSQLASLLKVHLELRQFKVF-------------IDVERLEAGK-F-D----NNLLQSIKQARNFLLVLTPK 720 (979)
Q Consensus 660 VFISYRR~Dg~~~As~L~e~Le~~G~rVF-------------iD~~~Ie~Gd-f-~----~~L~~aI~~SrvfIvVLSp~ 720 (979)
||||.+..|..++.. +...|...||++| ++.+.+..+. - . ++|...|++-++-+||.+|.
T Consensus 27 vliSv~d~dK~~l~~-~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~ 105 (143)
T 2yvq_A 27 ILIGIQQSFRPRFLG-VAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPN 105 (143)
T ss_dssp EEEECCGGGHHHHHH-HHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCC
T ss_pred EEEEecccchHHHHH-HHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCC
Confidence 999999887555544 5668888899988 2333332221 1 2 57999999999999999987
Q ss_pred c
Q psy4858 721 A 721 (979)
Q Consensus 721 ~ 721 (979)
-
T Consensus 106 ~ 106 (143)
T 2yvq_A 106 N 106 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=41.63 E-value=2.5e+02 Score=32.61 Aligned_cols=258 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHhhcCC-ChhHHhHHHHHHHHhhcc-chhhHHHhhc---hhHHHhhhhhc--------------cccccccchhhhhh
Q psy4858 218 LISNCVEK-DLDLQFSSARLLEQCLTT-ENRDHVVENG---LDKVVRVACVC--------------TKNINSVEHSRVGT 278 (979)
Q Consensus 218 Li~~~~s~-~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G---l~~lv~la~~~--------------tk~~~~~~~~r~~~ 278 (979)
++.++..+ +...|..+++||..++.. +-|.-+.+.+ +.+++.+.... ++..-.+...-.
T Consensus 172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l-- 249 (480)
T 1ho8_A 172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL-- 249 (480)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH--
T ss_pred HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH--
Q ss_pred hHhhhhhhcChhhHHHHhhcCch--HHHHhhhccC-ChhHHHHHHHhhhhhcccC----CchhHHHHHhcCCcchhcccc
Q psy4858 279 GILEHLFKHSEGTCSDVIGLGGL--DTVLFECRKN-DIETLRHCAGALANLSLYG----GAENQEAMIKRKVPVWLFPLA 351 (979)
Q Consensus 279 giL~~lfkHSe~t~~~lV~~Ggl--~~Ll~l~r~~-d~~~lr~ca~ALaNlAl~~----~~~~q~~mi~~~~~~wL~~La 351 (979)
..-++.+-+++.+..+...+-. ..|+..+|.. -..+.|.|-.+|-||.-.+ .....+.|+..+++.-|-.|.
T Consensus 250 -l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 250 -LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp -HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Q ss_pred ccCCc---------cchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChhhhhhhhhhcccCCCc
Q psy4858 352 FHNDD---------NIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNR 422 (979)
Q Consensus 352 ~s~dd---------~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~~fAr~~l~~~~g~~~ 422 (979)
...=. .++..=-=.+-.|.+=.||..| ++||.+.- -|.-++ ..|=+.|..-....+-
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~E----------l~sG~L~W-SP~H~s---e~FW~ENa~kf~e~~~ 394 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAE----------LDSKLLCW-SPPHVD---NGFWSDNIDEFKKDNY 394 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH----------HHHTCCCC-CGGGGC---HHHHHHHSGGGSSGGG
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHH----------HhcCCccc-CCCccc---hhHHHHHHHHHHhcch
Q ss_pred hhhhhhhhccc----------cchHHHHHHHHHHhhHHhhhhhhcCCchhhhhhCccchhhhhhcCCccchhhhhhhhHh
Q psy4858 423 NWLQKLVPVLS----------SKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLR 492 (979)
Q Consensus 423 g~L~~LvplL~----------s~~eE~q~lAafhl~~ea~iKk~q~n~~~F~eiGaIe~LkrLasSpnd~asklAaqaLe 492 (979)
..++.|+.+|. ++.....++|.+-.- .-++---+.+....+.|+=+..-++...+++-...-|-+|+.
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Dig--efvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDIT--HVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH--HHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHH--HHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Q ss_pred hc
Q psy4858 493 LI 494 (979)
Q Consensus 493 ~~ 494 (979)
.+
T Consensus 473 kl 474 (480)
T 1ho8_A 473 AI 474 (480)
T ss_dssp HH
T ss_pred HH
No 227
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=40.76 E-value=92 Score=32.10 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=72.7
Q ss_pred HhhcCCChhHHhHHHHHHHHhhcc-----chhhHHHhh---chhHHHhhhhhc-cccccccchhhhhhhHhhhhhhcChh
Q psy4858 220 SNCVEKDLDLQFSSARLLEQCLTT-----ENRDHVVEN---GLDKVVRVACVC-TKNINSVEHSRVGTGILEHLFKHSEG 290 (979)
Q Consensus 220 ~~~~s~~~~~q~~aa~~Le~~~~~-----~Nr~~Iv~~---Gl~~lv~la~~~-tk~~~~~~~~r~~~giL~~lfkHSe~ 290 (979)
+.+...|..++..+..+|..++.. ..+.+.... -+..|+ .+| .+. + ...-..+..+|..++..+.
T Consensus 62 k~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lv---eK~l~~~-k-~~~~~~a~~~l~~~~~~~~- 135 (278)
T 4ffb_C 62 QYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLV---EKGLTSS-R-ATTKTQSMSCILSLCGLDT- 135 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHH---HHTSSCC-C-HHHHHHHHHHHHHHHHTSS-
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHH---HHHhcCc-c-HHHHHHHHHHHHHHHHhcC-
Confidence 344556777888888888877532 122222221 133333 232 122 2 0222233334444422221
Q ss_pred hHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhh-cccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHHHHH
Q psy4858 291 TCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL-SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369 (979)
Q Consensus 291 t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNl-Al~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAla~L 369 (979)
.-..+ ++.|+..+....|-+...|...|.++ .-||.....-...-+.+...|..+..+.|..||-.|.-.+..+
T Consensus 136 ~~~~~-----~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 136 SITQS-----VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp SSHHH-----HHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHH-----HHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 11122 24666677888999999999998887 3344322211111123445677777888889998876555444
No 228
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=39.03 E-value=1e+02 Score=36.52 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=50.0
Q ss_pred CC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHH
Q psy4858 696 AG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAI 773 (979)
Q Consensus 696 ~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~l 773 (979)
|| +|..+..+++..|+.+|+|+...- ..+......+..+...++++|+|+-....+.. +..+....+
T Consensus 79 PGh~dF~~ev~~~l~~aD~aILVVDa~~----------gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a-~~~~v~~ei 147 (599)
T 3cb4_D 79 PGHVDFSYEVSRSLAACEGALLVVDAGQ----------GVEAQTLANCYTAMEMDLEVVPVLNKIDLPAA-DPERVAEEI 147 (599)
T ss_dssp CCCGGGHHHHHHHHHHCSEEEEEEETTT----------CCCTHHHHHHHHHHHTTCEEEEEEECTTSTTC-CHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCEEEEEEECCC----------CCCHHHHHHHHHHHHCCCCEEEeeeccCcccc-cHHHHHHHH
Confidence 67 599999999999999999998642 22344556677788889999999876544432 233334555
Q ss_pred hhhccc
Q psy4858 774 CKFNGV 779 (979)
Q Consensus 774 a~~ngi 779 (979)
.+..++
T Consensus 148 ~~~lg~ 153 (599)
T 3cb4_D 148 EDIVGI 153 (599)
T ss_dssp HHHTCC
T ss_pred HHHhCC
Confidence 554443
No 229
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=35.15 E-value=1.6e+02 Score=28.93 Aligned_cols=54 Identities=22% Similarity=0.176 Sum_probs=37.7
Q ss_pred ccchHHHHHHH-HHhcCCce-EeecccCCCC---------cchHHHHHHHHhCCEEEEEECcccch
Q psy4858 669 GSQLASLLKVH-LELRQFKV-FIDVERLEAG---------KFDNNLLQSIKQARNFLLVLTPKALD 723 (979)
Q Consensus 669 g~~~As~L~e~-Le~~G~rV-FiD~~~Ie~G---------df~~~L~~aI~~SrvfIvVLSp~~l~ 723 (979)
...++..+.+. |+..|..| .+|..+++.. +-...+.+.|..++. |++.+|-|..
T Consensus 18 t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~-ii~~sP~y~~ 82 (197)
T 2vzf_A 18 TAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADG-LIVATPIYKA 82 (197)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSE-EEEEEECBTT
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCE-EEEEeCccCC
Confidence 46788889888 88888765 4576665421 123456778999996 5677898864
No 230
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=35.10 E-value=23 Score=39.61 Aligned_cols=89 Identities=15% Similarity=0.077 Sum_probs=57.8
Q ss_pred cCchHHHHhhhccC-----------ChhHHHHHHHhhhhhcccCCchhHHHHHhcCCcchhccccccCCccchhhHHHHH
Q psy4858 298 LGGLDTVLFECRKN-----------DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAI 366 (979)
Q Consensus 298 ~Ggl~~Ll~l~r~~-----------d~~~lr~ca~ALaNlAl~~~~~~q~~mi~~~~~~wL~~La~s~dd~vr~~A~lAl 366 (979)
.||++.|+..+.+. |.+.+..|..+|--| |+....-...+..+.++.+|+....+....+|..|.=-|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal-mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF-MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH-TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 46777777666532 456666666666555 333333345567888899999998888888888775345
Q ss_pred HHHhcchH--H-HHHHHhhhhHHH
Q psy4858 367 AVLVANTE--I-EAAVLKSVQEAA 387 (979)
Q Consensus 367 a~Lasn~e--i-~~~~~~~~~~~~ 387 (979)
+.+|..++ - +..||.||.+.+
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~ 148 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERA 148 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHH
Confidence 55555433 3 777788887743
No 231
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=34.10 E-value=1e+02 Score=30.08 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHhcC-----ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHhhc-hhHHHhhhh
Q psy4858 200 EIGYSLCNTLRNCG-----GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVENG-LDKVVRVAC 262 (979)
Q Consensus 200 ~~~~~lc~~ir~~G-----gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~~G-l~~lv~la~ 262 (979)
++.-.+||.|+... ++..|.+-+.+++..+|..|-.+|+.|..- .=...|+... |..|++++.
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~ 91 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLS 91 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHc
Confidence 55678899998855 466778888999999999999999999842 2335566666 788888873
No 232
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=33.69 E-value=1.3e+02 Score=33.44 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=65.8
Q ss_pred HHHHhcCChHHHHHhhc-----------CCChhHHhHHHHHHHHhhcc-chhhHHHhhc--hhHHHhhhhhccccccccc
Q psy4858 207 NTLRNCGGMDLLISNCV-----------EKDLDLQFSSARLLEQCLTT-ENRDHVVENG--LDKVVRVACVCTKNINSVE 272 (979)
Q Consensus 207 ~~ir~~Ggld~Li~~~~-----------s~~~~~q~~aa~~Le~~~~~-~Nr~~Iv~~G--l~~lv~la~~~tk~~~~~~ 272 (979)
..+. .+|+..|++.+. ..+.+.|..+.+||..++.. .-.++|...- +..|+... .+ +.+.
T Consensus 104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L----~s-~~~~ 177 (383)
T 3eg5_B 104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAM----DP-AVPN 177 (383)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTC----CT-TSHH
T ss_pred HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHh----CC-CchH
Confidence 4444 678999998774 23568999999999999843 5566666654 33333322 11 1122
Q ss_pred hhhhhhhHhhhhhhcCh-hh-HHHH----------hhcCchHHHHhhhccCChhHHHHHHHhhhhhcccCCch
Q psy4858 273 HSRVGTGILEHLFKHSE-GT-CSDV----------IGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAE 333 (979)
Q Consensus 273 ~~r~~~giL~~lfkHSe-~t-~~~l----------V~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~~~~~ 333 (979)
+-+.++-+|..+--.++ ++ ...+ -+.+-...++..++..+..-...++..|-|.-+++.+.
T Consensus 178 ~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 178 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 33333334432211111 11 2222 23455777888888754444445566777777776543
No 233
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=33.64 E-value=1.4e+02 Score=35.43 Aligned_cols=73 Identities=15% Similarity=0.303 Sum_probs=50.1
Q ss_pred CC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCChHHHHHH
Q psy4858 696 AG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAI 773 (979)
Q Consensus 696 ~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LPedLr~l 773 (979)
|| +|..+..+++..|+.+|+|+...- ..+......+..+...++++|+|+-....+.. +....+..+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~----------gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a-~~~~v~~el 149 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQ----------GIEAQTVANFWKAVEQDLVIIPVINKIDLPSA-DVDRVKKQI 149 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTT----------BCCHHHHHHHHHHHHTTCEEEEEEECTTSTTC-CHHHHHHHH
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCC----------CccHHHHHHHHHHHHCCCCEEEEEeccCcccc-CHHHHHHHH
Confidence 67 599999999999999999998652 23345566677788889999999876544432 222334555
Q ss_pred hhhccc
Q psy4858 774 CKFNGV 779 (979)
Q Consensus 774 a~~ngi 779 (979)
.+..++
T Consensus 150 ~~~lg~ 155 (600)
T 2ywe_A 150 EEVLGL 155 (600)
T ss_dssp HHTSCC
T ss_pred HHhhCC
Confidence 554443
No 234
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=31.56 E-value=2.2e+02 Score=25.43 Aligned_cols=77 Identities=8% Similarity=0.143 Sum_probs=44.0
Q ss_pred cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHh-cCCeEEEEecCCCCCCCCCChHHHHHHhhh
Q psy4858 698 KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-SGCNIIPILDNFAWPDPEQLPADMRAICKF 776 (979)
Q Consensus 698 df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~-~~k~IIPVl~~f~~pd~e~LPedLr~la~~ 776 (979)
+|.......++.++.+|+|+...-.... ..-..|. .++..... .+++++-|+-....++.....+..+.++..
T Consensus 63 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~-----~~~~~~~-~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 136 (166)
T 2ce2_X 63 EYSAMRDQYMRTGEGFLCVFAINNTKSF-----EDIHQYR-EQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARS 136 (166)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTCHHHH-----HHHHHHH-HHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH
T ss_pred hhhHHHHHhhccCCEEEEEEECCCHHHH-----HHHHHHH-HHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHH
Confidence 3777677788999999999986532211 0112333 23332222 367888776655434334455667777665
Q ss_pred cccc
Q psy4858 777 NGVR 780 (979)
Q Consensus 777 ngi~ 780 (979)
.++.
T Consensus 137 ~~~~ 140 (166)
T 2ce2_X 137 YGIP 140 (166)
T ss_dssp HTCC
T ss_pred cCCe
Confidence 5544
No 235
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=31.55 E-value=3.5e+02 Score=28.48 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=72.1
Q ss_pred HHHhhccCCcchhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhcccc
Q psy4858 188 MQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKN 267 (979)
Q Consensus 188 ~~~Awa~p~~~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~ 267 (979)
|++|-|.+-+ +...+..+.-+..-++-||..+-.+-=.||-||-++|-.+.++ +...-+.-+.+|.-+.++ +
T Consensus 10 ~realatge~---~~eii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~--~~el~epl~~kL~vm~~k---s 81 (253)
T 2db0_A 10 IREALANGEH---LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT--REDLYEPMLKKLFSLLKK---S 81 (253)
T ss_dssp HHHHHHTTCS---HHHHHHHHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHH---C
T ss_pred HHHHHhhhhh---HHHHHHHHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHH--hHHHHHHHHHHHHHHHhh---c
Confidence 4566665544 6666667777777788888888777677899988888777643 111111123444444432 1
Q ss_pred ccccch---hhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhccc
Q psy4858 268 INSVEH---SRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLY 329 (979)
Q Consensus 268 ~~~~~~---~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl~ 329 (979)
..+.. -..+.|.+... +-++|+ +.+|.|..-.|-+|+.+.=.-+-||--++..
T Consensus 82 -EaIpltqeIa~a~G~la~i-------~Pe~v~-~vVp~lfanyrigd~kikIn~~yaLeeIara 137 (253)
T 2db0_A 82 -EAIPLTQEIAKAFGQMAKE-------KPELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKA 137 (253)
T ss_dssp -CSHHHHHHHHHHHHHHHHH-------CHHHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH
T ss_pred -ccCchHHHHHHHHhHHHHh-------CHHHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHh
Confidence 11222 12234444333 334444 4556777777777777776666666665443
No 236
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=31.12 E-value=2.5e+02 Score=27.64 Aligned_cols=112 Identities=13% Similarity=0.222 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHhhHHHHHhhhhhhHHHHhhhhhHHHHHHHhHHHHHhhhccCchhccchhHHHHHHHHHHHHhhccCC
Q psy4858 117 SQQNIDAIIAKYTGCLENIVQDSVKLFAIKVFSMKEVFILRSFILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPT 196 (979)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Awa~p~ 196 (979)
+++|++..+...-..|..+.+.-. .. . .+ .......-.+|.+|-.++.++-
T Consensus 2 ~~~e~~~~~~~l~~~M~~Aa~~D~----------------~a-----~-~~---~~PA~~KlklL~~V~~~l~k~~---- 52 (145)
T 2xpp_A 2 DPGTVLEISRSLKKRMQDILKKDN----------------AN-----N-LE---GRPATGKIENVEEISDILMSKA---- 52 (145)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHH----------------HH-----H-HH---TSCCCHHHHHHHHHHHHHTCTT----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----------------HH-----H-Hc---CChHHHHHhhHHHHHHHHhhHH----
Confidence 467888888888888888777610 00 0 01 0112244556666666555432
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHhhcC------CChhHHhHHHHHHHHhhccchhhHHHhhchhHHHhhhhhcccc
Q psy4858 197 HGHEIGYSLCNTLRNCGGMDLLISNCVE------KDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKN 267 (979)
Q Consensus 197 ~~~~~~~~lc~~ir~~Ggld~Li~~~~s------~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~Gl~~lv~la~~~tk~ 267 (979)
+-+++.+.|.|+.+=.-+.- |+.++|-.--++|.++ +-+++++.++||+++|....++.++
T Consensus 53 --------l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l--PI~~e~Lk~SglGkvv~~l~k~~~e 119 (145)
T 2xpp_A 53 --------LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM--KIHKEHLVTSGVGKIVYFYSINPKE 119 (145)
T ss_dssp --------THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS--CCCHHHHHHHCHHHHHHHHHHCTTS
T ss_pred --------HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC--CCCHHHhhcCCCCcchhhhhcCCcc
Confidence 23556677777766544432 5667777766667666 3569999999999999887655444
No 237
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=30.92 E-value=1e+02 Score=35.85 Aligned_cols=65 Identities=11% Similarity=0.249 Sum_probs=49.0
Q ss_pred cCCce-EeecccCCCC--cchHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCC
Q psy4858 683 RQFKV-FIDVERLEAG--KFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFA 759 (979)
Q Consensus 683 ~G~rV-FiD~~~Ie~G--df~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~ 759 (979)
.|+++ ++| -|| ||..+..++++.+|-.|+|++.. ..-..-...=+..|.+.++++|+++-...
T Consensus 98 ~~~~iNlID----TPGHvDF~~Ev~raL~~~DgAvlVvda~----------~GV~~qT~~v~~~a~~~~lp~i~fINK~D 163 (548)
T 3vqt_A 98 RDRVVNLLD----TPGHQDFSEDTYRVLTAVDSALVVIDAA----------KGVEAQTRKLMDVCRMRATPVMTFVNKMD 163 (548)
T ss_dssp TTEEEEEEC----CCCGGGCSHHHHHHHHSCSEEEEEEETT----------TBSCHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCEEEEEEe----CCCcHHHHHHHHHHHHhcCceEEEeecC----------CCcccccHHHHHHHHHhCCceEEEEeccc
Confidence 34554 345 388 79999999999999999999865 23334566677889999999999887654
Q ss_pred CC
Q psy4858 760 WP 761 (979)
Q Consensus 760 ~p 761 (979)
.+
T Consensus 164 r~ 165 (548)
T 3vqt_A 164 RE 165 (548)
T ss_dssp SC
T ss_pred ch
Confidence 33
No 238
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=26.72 E-value=2.2e+02 Score=32.50 Aligned_cols=124 Identities=16% Similarity=0.120 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhccCCc-chhHHHHHHHHHHhcCChHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHH---hhchh
Q psy4858 180 VLDKVNDLMQKAWAVPTH-GHEIGYSLCNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVV---ENGLD 255 (979)
Q Consensus 180 ~~~~~~~~~~~Awa~p~~-~~~~~~~lc~~ir~~Ggld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv---~~Gl~ 255 (979)
-+..+.|+|.++|-+=.+ -|+. ++ -|-++...|+...---..-|+.++--..-++|-|.- +-|+.-. ++-|.
T Consensus 252 el~~LiQVvtR~FDLL~LLmHdS-nA-IDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVS--DaksL~~t~L~e~LP 327 (619)
T 3c2g_A 252 ELAHLIQVIIRTFDLLGLLLHDS-DA-IDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVS--DAKALAKTPLENILP 327 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSH-HH-HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHT--TCGGGGTSCCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cc-ccceeecccceeEEEEeecCCcHHHHhhhheeeeec--chHHHhhccccccch
Confidence 467888899998876554 2332 22 367788888888888888888887777767776653 2222211 11255
Q ss_pred HHHhhhhhccccccccchhhhhhhHhhhhhhcChhhHHHHhhcCchHHHHhhhccC
Q psy4858 256 KVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKN 311 (979)
Q Consensus 256 ~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~ 311 (979)
-+++..+ -+.+=|+--+|||.|.|..+|.--...--|+.|+|+-|-....+.
T Consensus 328 Fi~~~i~----~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 328 FLLRLIE----IHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHH----HCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred HHHHHhc----cCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 5666663 223348889999999999999999999999999998876665554
No 239
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=25.85 E-value=1.9e+02 Score=29.67 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=74.2
Q ss_pred hHHHHHhhcCCChhHHhHHHHHHHHhhccchhhHHHhhc-hhHHHhhhhhccccccccchhhhhhhHhhhhhhcChh---
Q psy4858 215 MDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEG--- 290 (979)
Q Consensus 215 ld~Li~~~~s~~~~~q~~aa~~Le~~~~~~Nr~~Iv~~G-l~~lv~la~~~tk~~~~~~~~r~~~giL~~lfkHSe~--- 290 (979)
+..|+..+......|+-.+..+|..+...-|. ++-.+ |+.++.-...+-++ +...+...+...|..++.++..
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~--~~~~~~l~~ll~~l~~~l~~-k~~~vk~~al~~l~~~~~~~~~~~~ 182 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDP--LASSGRNEDMLKDILEHMKH-KTPQIRMECTQLFNASMKEEKDGYS 182 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT--TCTTCTTHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc--cccCCcHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCcch
Confidence 45777888888888988888888888632222 22324 55555544444454 3457777777888888877764
Q ss_pred hHHHHhhcCchHHHHhhhccCChhHHHHHHHhhhhhcc
Q psy4858 291 TCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328 (979)
Q Consensus 291 t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca~ALaNlAl 328 (979)
.-...+...-++.|...+.-+++++...|..+|.-+..
T Consensus 183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22223323456688888888899999999998888743
No 240
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=25.05 E-value=3.3e+02 Score=25.80 Aligned_cols=97 Identities=10% Similarity=0.186 Sum_probs=51.3
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCC-ChHHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQ-LPADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~-LPedLr~la~~n 777 (979)
|.......+++++.+|+|+...--.+. ..-..|. .++......+++||-|.-....++... ..+..+.++...
T Consensus 70 ~~~~~~~~~~~~d~ii~v~d~~~~~s~-----~~~~~~~-~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 143 (203)
T 1zbd_A 70 YRTITTAYYRGAMGFILMYDITNEESF-----NAVQDWS-TQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL 143 (203)
T ss_dssp GHHHHHTTGGGCSEEEEEEETTCHHHH-----HHHHHHH-HHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH
T ss_pred hcchHHHhhcCCCEEEEEEECcCHHHH-----HHHHHHH-HHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC
Confidence 766666788999999999986532111 0112232 223222124677777765544333222 345566666654
Q ss_pred ccccc------cccHHHHHHHHHHHHhhcc
Q psy4858 778 GVRWI------HDYQDACVDKLERFMRGEL 801 (979)
Q Consensus 778 gi~w~------~~yq~a~IdkIvr~I~g~l 801 (979)
++.+. ...-+..++.|++.+...+
T Consensus 144 ~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 144 GFEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp TCEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 54422 1223556666666665543
No 241
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=24.92 E-value=72 Score=36.26 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=83.0
Q ss_pred hhhhhhcChhhHHHHhhcCchHHHHhhhccCChhHHHHHH-----------HhhhhhcccCCchhHHHHHhcCCcchhcc
Q psy4858 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCA-----------GALANLSLYGGAENQEAMIKRKVPVWLFP 349 (979)
Q Consensus 281 L~~lfkHSe~t~~~lV~~Ggl~~Ll~l~r~~d~~~lr~ca-----------~ALaNlAl~~~~~~q~~mi~~~~~~wL~~ 349 (979)
|.||.-|......-.|++.|+..+--...-.+.++.|--- .|+.|| ++ -+|--+--
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L------~e-------~LPFi~~~ 332 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL------EN-------ILPFLLRL 332 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC------TT-------HHHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc------cc-------cchHHHHH
Confidence 5677789999999999999999998888888887777532 233343 11 11222222
Q ss_pred ccccCCccchhhHHHHHHHHhcchHHHHHHHhhhhHHHHHhhCCccchHhhhhcCChh-hhh
Q psy4858 350 LAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS-EFA 410 (979)
Q Consensus 350 La~s~dd~vr~~A~lAla~Lasn~ei~~~~~~~~~~~~V~~sG~l~lv~~~~~~~~P~-~fA 410 (979)
+-.+++|.|-|...+.|.|.++-|---.++ -.++|++.|+.-.+..++|. +|+
T Consensus 333 i~~h~eDdvvYSGTGFLSNVVAHKq~VKel--------AI~~nAI~LLh~~I~ky~~Lsdf~ 386 (619)
T 3c2g_A 333 IEIHPDDEVIYSGTGFLSNVVAHKQHVKDI--------AIRSNAIFLLHTIISKYPRLDELT 386 (619)
T ss_dssp HHHCCCHHHHHHHHHHHHHHSTTCHHHHHH--------HHHTTHHHHHHHHHHTSCCGGGCC
T ss_pred hccCCCcceEEecchHHHHHHhcccchHHH--------HhccCcHHHHHHHHhhCCChhhhh
Confidence 336899999999999999999998888885 56789999999999999995 665
No 242
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=24.13 E-value=1.5e+02 Score=30.19 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=53.0
Q ss_pred HHHHHHHhhc----cCCcchhHHHHHHHHHHhcC-----ChHHHHHhhcCCChhHHhHHHHHHHHhhcc---chhhHHHh
Q psy4858 184 VNDLMQKAWA----VPTHGHEIGYSLCNTLRNCG-----GMDLLISNCVEKDLDLQFSSARLLEQCLTT---ENRDHVVE 251 (979)
Q Consensus 184 ~~~~~~~Awa----~p~~~~~~~~~lc~~ir~~G-----gld~Li~~~~s~~~~~q~~aa~~Le~~~~~---~Nr~~Iv~ 251 (979)
+-++|++|=. -|.. ++.-.+||.|+... ++-.|.+-+.+++..+|..|-.||+.|+.- .=+..|+.
T Consensus 6 ~~~~ie~AT~~~~~~~dw--~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~ 83 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDW--PSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT 83 (220)
T ss_dssp HHHHHHHHHCTTCSSCCH--HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS
T ss_pred HHHHHHHHcCCCCCCcCH--HHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 4455555543 3334 45667899888643 345677888999999999999999999732 22355666
Q ss_pred hc-hhHHHhhh
Q psy4858 252 NG-LDKVVRVA 261 (979)
Q Consensus 252 ~G-l~~lv~la 261 (979)
.. |..+++++
T Consensus 84 ~~fl~~l~~l~ 94 (220)
T 1dvp_A 84 KENCEMFSSFL 94 (220)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66 77788887
No 243
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=24.04 E-value=1.6e+02 Score=26.91 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=43.4
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCC-hHHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQL-PADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~L-PedLr~la~~n 777 (979)
|.......+++++.+|+|++..--... ..-..|. .++......+++||-|.-....++...+ .+.++.++...
T Consensus 77 ~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 150 (179)
T 1z0f_A 77 FRAVTRSYYRGAAGALMVYDITRRSTY-----NHLSSWL-TDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN 150 (179)
T ss_dssp TCHHHHHHHHTCSEEEEEEETTCHHHH-----HTHHHHH-HHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred hhhhHHHHhccCCEEEEEEeCcCHHHH-----HHHHHHH-HHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc
Confidence 777778889999999999987543221 1112332 2343333356777777665433322222 35666666655
Q ss_pred cccc
Q psy4858 778 GVRW 781 (979)
Q Consensus 778 gi~w 781 (979)
++.+
T Consensus 151 ~~~~ 154 (179)
T 1z0f_A 151 GLLF 154 (179)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 5443
No 244
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=23.63 E-value=1.8e+02 Score=26.74 Aligned_cols=94 Identities=9% Similarity=0.066 Sum_probs=51.3
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHh---cCCeEEEEecCCCCCCCCCC-hHHHHHHh
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ---SGCNIIPILDNFAWPDPEQL-PADMRAIC 774 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~---~~k~IIPVl~~f~~pd~e~L-PedLr~la 774 (979)
|.......++.++.+|+|+...--.+. +.+...+....+ .+++||-|.-....++...+ .+.++.++
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 144 (181)
T 2efe_B 74 YHSLAPMYYRGAAAAIIVFDVTNQASF---------ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYA 144 (181)
T ss_dssp GGGGTHHHHTTCSEEEEEEETTCHHHH---------HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHH---------HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHH
Confidence 666666778999999999986532111 112222233333 25667766655443333333 45667776
Q ss_pred hhcccccc--cccHHHHHHHHHHHHhhcc
Q psy4858 775 KFNGVRWI--HDYQDACVDKLERFMRGEL 801 (979)
Q Consensus 775 ~~ngi~w~--~~yq~a~IdkIvr~I~g~l 801 (979)
...++.+. .......|+++.+.|...+
T Consensus 145 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 145 QENGLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp HHTTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred HHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 65554432 1223445666766666554
No 245
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=21.83 E-value=2.9e+02 Score=25.86 Aligned_cols=96 Identities=9% Similarity=0.170 Sum_probs=52.5
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHhcCCeEEEEecCCCCCCCCCCh-HHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNIIPILDNFAWPDPEQLP-ADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~~~k~IIPVl~~f~~pd~e~LP-edLr~la~~n 777 (979)
|.......++.++.+|+|+...--.+. .....| ..++......+++||-|.-....++...+. +..+.++...
T Consensus 78 ~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~-~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~ 151 (196)
T 3tkl_A 78 FRTITSSYYRGAHGIIVVYDVTDQESF-----NNVKQW-LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSL 151 (196)
T ss_dssp GCTTHHHHHTTCSEEEEEEETTCHHHH-----HTHHHH-HHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHT
T ss_pred hhhhHHHHHhhCCEEEEEEECcCHHHH-----HHHHHH-HHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 666677788999999999986532211 111223 233433333467777776654333333333 4566666655
Q ss_pred cccccc------ccHHHHHHHHHHHHhhc
Q psy4858 778 GVRWIH------DYQDACVDKLERFMRGE 800 (979)
Q Consensus 778 gi~w~~------~yq~a~IdkIvr~I~g~ 800 (979)
++.+.. ..-++.++.|++.+...
T Consensus 152 ~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 152 GIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 544321 23355566666666544
No 246
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=21.52 E-value=4.8e+02 Score=26.31 Aligned_cols=106 Identities=13% Similarity=0.182 Sum_probs=58.6
Q ss_pred ccchHHHHHHHHHhc-CCce-EeecccCCC-------------C-------cchHHHHHHHHhCCEEEEEECcccchhhc
Q psy4858 669 GSQLASLLKVHLELR-QFKV-FIDVERLEA-------------G-------KFDNNLLQSIKQARNFLLVLTPKALDRCM 726 (979)
Q Consensus 669 g~~~As~L~e~Le~~-G~rV-FiD~~~Ie~-------------G-------df~~~L~~aI~~SrvfIvVLSp~~l~~~~ 726 (979)
...++..+.+.|+.. |..| .+|..++.. | +-...+.+.|.+||. ||+.+|-|.....
T Consensus 17 T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~-iI~~sP~y~~~~p 95 (242)
T 1sqs_A 17 TLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI-IIISSPVYLQNVS 95 (242)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE-EEEEEEECSSSCC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE-EEEEccccccCCC
Confidence 366888888888877 7776 446555421 1 223567788999996 6677888864210
Q ss_pred ccCCCcCChhHHHHHHHH----HhcCCeEEEEecCCCCCCCCCChHHHHHHhhhccccc
Q psy4858 727 EDNESECKDWVHREIVAA----LQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRW 781 (979)
Q Consensus 727 ~~~i~~~SdWV~rEL~~A----l~~~k~IIPVl~~f~~pd~e~LPedLr~la~~ngi~w 781 (979)
. .-+.|+-+ +... .-.||++++|... .++.....-..|+.++.+.|+.+
T Consensus 96 ~----~lK~~iDr-~~~~~~~~~l~gK~~~~i~t~-g~~g~~~~~~~l~~~l~~~G~~~ 148 (242)
T 1sqs_A 96 V----DTKNFIER-IGGWSHLFRLAGKFVVTLDVA-ESNGSDNVSEYLRDIFSYMGGQI 148 (242)
T ss_dssp H----HHHHHHHH-TGGGTTTTTTTTCEEEEEEEE-SSCCSCCHHHHHHHHHHHTTCEE
T ss_pred H----HHHHHHHH-HHHhccccccCCCEEEEEEeC-CCCchhhHHHHHHHHHHHCCCee
Confidence 0 00112111 1000 1247888877442 12222234456777777666553
No 247
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=21.15 E-value=1.7e+02 Score=33.18 Aligned_cols=84 Identities=13% Similarity=0.157 Sum_probs=56.0
Q ss_pred chhHHHHHHHHHhhhhccccccCCCCCCCCCeeEecccCCccchHHHHHHHHHhcCCceEeecccCCCCcchHHHHHHHH
Q psy4858 629 SIHRLRIMEAIHEIEREWNKEYEDNPDKNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIK 708 (979)
Q Consensus 629 ~~Hr~rIl~AIk~l~~~~~~~~~~~~~~~yDVFISYRR~Dg~~~As~L~e~Le~~G~rVFiD~~~Ie~Gdf~~~L~~aI~ 708 (979)
++.-.||+.++..... .+ ......+||||-+-.++....|-.+...|+..|++|-+|... ..+...+..+-+
T Consensus 348 aiGieRli~~L~e~g~---~p--~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d~~~---~sl~~q~k~A~~ 419 (465)
T 3net_A 348 SIGLTRLISRLLKAGI---LN--TLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEK---RQLGKQFQAADK 419 (465)
T ss_dssp EEEHHHHHHHHHHTTS---SC--CCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCCEEECCSC---CCHHHHHHHHHH
T ss_pred eccHHHHHHHHHHcCC---CC--CcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHH
Confidence 3445677777765321 11 012346799986655554567888999999999999998653 245666777655
Q ss_pred hCCEEEEEECcc
Q psy4858 709 QARNFLLVLTPK 720 (979)
Q Consensus 709 ~SrvfIvVLSp~ 720 (979)
..--+++|++++
T Consensus 420 ~g~p~~iiiG~~ 431 (465)
T 3net_A 420 QGIRFCVIIGAD 431 (465)
T ss_dssp HTCCEEEECCHH
T ss_pred cCCCEEEEECch
Confidence 555578888887
No 248
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=20.27 E-value=3.8e+02 Score=24.69 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=41.1
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHHh-cCCeEEEEecCCCCCCCCCChHHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-SGCNIIPILDNFAWPDPEQLPADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al~-~~k~IIPVl~~f~~pd~e~LPedLr~la~~n 777 (979)
|.......++.++.+|+|+...--... +-+...+..... .+++||-|+-.....+.....++++.++.-.
T Consensus 106 ~~~~~~~~~~~~d~~i~v~D~~~~~s~---------~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~ 176 (208)
T 3clv_A 106 YASIVPLYYRGATCAIVVFDISNSNTL---------DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDN 176 (208)
T ss_dssp CTTTHHHHHTTCSEEEEEEETTCHHHH---------HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHH---------HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHc
Confidence 666677788999999999987532110 112222222222 4567777765544222233456677766655
Q ss_pred cccc
Q psy4858 778 GVRW 781 (979)
Q Consensus 778 gi~w 781 (979)
++.+
T Consensus 177 ~~~~ 180 (208)
T 3clv_A 177 NLLF 180 (208)
T ss_dssp TCEE
T ss_pred CCcE
Confidence 5543
No 249
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=20.08 E-value=2.7e+02 Score=25.76 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=51.4
Q ss_pred chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCChhHHHHHHHHH-hcCCeEEEEecCCCCCCCCCChHHHHHHhhhc
Q psy4858 699 FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAAL-QSGCNIIPILDNFAWPDPEQLPADMRAICKFN 777 (979)
Q Consensus 699 f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~SdWV~rEL~~Al-~~~k~IIPVl~~f~~pd~e~LPedLr~la~~n 777 (979)
|.......+..++.+|+|+...--.+. ..-..|. .++.... ..+++||-|.-....++.....+.+..++...
T Consensus 65 ~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~-~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 138 (189)
T 4dsu_A 65 YSAMRDQYMRTGEGFLCVFAINNTKSF-----EDIHHYR-EQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSY 138 (189)
T ss_dssp -CTTHHHHHHHCSEEEEEEETTCHHHH-----HHHHHHH-HHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHH-----HHHHHHH-HHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHc
Confidence 666566678899999999986632211 0111232 2222222 23677877766554444445566777777665
Q ss_pred cccccc------ccHHHHHHHHHHHHhh
Q psy4858 778 GVRWIH------DYQDACVDKLERFMRG 799 (979)
Q Consensus 778 gi~w~~------~yq~a~IdkIvr~I~g 799 (979)
++.+.. ..-++.++.|++.+..
T Consensus 139 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 139 GIPFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 544321 2235555556555543
No 250
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=20.04 E-value=1.6e+02 Score=29.39 Aligned_cols=86 Identities=27% Similarity=0.390 Sum_probs=53.4
Q ss_pred eeEecccCCc---cchHHHHHHHHHhcCCceEeecccCCCCc-chHHHHHHHHhCCEEEEEECcccchhhcccCCCcCCh
Q psy4858 660 VFISYRRSNG---SQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKD 735 (979)
Q Consensus 660 VFISYRR~Dg---~~~As~L~e~Le~~G~rVFiD~~~Ie~Gd-f~~~L~~aI~~SrvfIvVLSp~~l~~~~~~~i~~~Sd 735 (979)
.||.+=+-|| ...+..|++.|+.+|+.|-.-.+ |.|. +.+.|.+.+.... .+|....-.. .+...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre--P~~t~~~~~ir~~l~~~~-----~~~~~~~ll~----~a~r~ 69 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE--PGGTETGEKIRKILLEEE-----VTPKAELFLF----LASRN 69 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES--SCSSHHHHHHHHHHHHSC-----CCHHHHHHHH----HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC--CCCCcHHHHHHHHhhccc-----CChHHHHHHH----HHHHH
Confidence 4899999986 45777899999999999866432 3344 7777777665543 2332211000 01112
Q ss_pred hHHHHHHHHHhcCCeEEEEecCC
Q psy4858 736 WVHREIVAALQSGCNIIPILDNF 758 (979)
Q Consensus 736 WV~rEL~~Al~~~k~IIPVl~~f 758 (979)
....+|..|++.|+.| |.|.|
T Consensus 70 ~~~~~I~~~L~~g~~V--i~DRy 90 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAV--LLDRY 90 (197)
T ss_dssp HHHHHHHHHHTTTCEE--EEESC
T ss_pred HHHHHHHHHHHCCCeE--Eeccc
Confidence 3456788899999865 34543
Done!