RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4858
(979 letters)
>gnl|CDD|188900 cd09501, SAM_SARM1-like_repeat1, SAM domain ot SARM1-like proteins,
repeat 1. SAM (sterile alpha motif) domain repeat 1 of
SARM1-like adaptor proteins is a protein-protein
interaction domain. SARM1-like proteins contain two
tandem SAM domains. SARM1-like proteins are involved in
TLR (Toll-like receptor) signaling. They are responsible
for targeted localization of the whole protein to
post-synaptic regions of axons. In humans SARM1
expression is detected in kidney and liver.
Length = 69
Score = 121 bits (306), Expect = 5e-33
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
VPLWS DV+ W++QIGF +YA F ES+VDGDLLLQL E+ L+ D+G+ +G+ R+RF R
Sbjct: 1 VPLWSVADVQTWLKQIGFEDYAEKFSESQVDGDLLLQLTEDELKQDLGMSSGLLRKRFLR 60
Query: 566 ELQNLKKMA 574
EL LK A
Sbjct: 61 ELVELKTSA 69
Score = 32.7 bits (75), Expect = 0.083
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 595 FSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIER 644
F Y + VD D + L+E++L + G+ + + R R + + E++
Sbjct: 18 FEDYAEKFSESQVDGDLLLQLTEDELKQDLGMSSGLLRKRFLRELVELKT 67
>gnl|CDD|188901 cd09502, SAM_SARM1-like_repeat2, SAM domain of SARM1-like, repeat
2. SAM (sterile alpha motif) domain repeat 2 of
SARM1-like adaptor proteins is a protein-protein
interaction domain. SARM1-like proteins contain two
tandem SAM domains. SARM1-like proteins are involved in
TLR (Toll-like receptor) signaling. They are responsible
for targeted localization of the whole protein to
post-synaptic regions of axons. In humans SARM1
expression is detected in kidney and liver.
Length = 70
Score = 112 bits (281), Expect = 1e-29
Identities = 41/70 (58%), Positives = 56/70 (80%)
Query: 575 DYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLR 634
DYSS D TNL+N+L +LG E+S YTY MLNAG+D++S+ +L+E+QL+ +CGI N IHRLR
Sbjct: 1 DYSSCDTTNLHNWLQSLGPEYSQYTYQMLNAGIDRNSLPSLTEDQLLEDCGITNGIHRLR 60
Query: 635 IMEAIHEIER 644
I+ AI +E
Sbjct: 61 ILNAIKGMEH 70
Score = 42.7 bits (101), Expect = 2e-05
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 511 TEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRR 562
T ++ W++ +G +++Y + + +D + L L E+ L +D GI NGI R R
Sbjct: 7 TTNLHNWLQSLGPEYSQYTYQMLNAGIDRNSLPSLTEDQLLEDCGITNGIHRLR 60
>gnl|CDD|222311 pfam13676, TIR_2, TIR domain. This is a family of bacterial
Toll-like receptors.
Length = 102
Score = 83.4 bits (207), Expect = 3e-19
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 12/105 (11%)
Query: 660 VFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTP 719
VFISY ++ + A L LE +V++D + + + + ++++ A L++L+P
Sbjct: 1 VFISYASAD-REWAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLSP 59
Query: 720 KALDRCMEDNESECKDWVHREIVAALQSGCNIIPI-LDNFAWPDP 763
L W E AAL+ G +IP+ L++ P
Sbjct: 60 AYLAS----------PWCRAEWGAALERGKRLIPVRLEDCELPGL 94
>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance.
Length = 140
Score = 82.8 bits (205), Expect = 1e-18
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 659 DVFISYRRSNGSQLASLLKVHLELRQFK--VFIDVERLEAGKFDNNLLQSIKQARNFLLV 716
DVFISY + L + +LR + VFID G + + ++I+++R ++V
Sbjct: 3 DVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEE-IDEAIEKSRIAIVV 61
Query: 717 LTPKALDRCMEDNESECKDWVHREIVAALQSGC-----NIIPILDNFAWPDPEQLPADMR 771
L+P + +W E+VAAL++ +IPI D + P R
Sbjct: 62 LSPNYAES----------EWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFR 111
Query: 772 AICKFNGVRWIHDYQDACVDKLERFM 797
+ K N ++W D ++ K +
Sbjct: 112 KVFKKNYLKWPEDEKEQFWKKALYAV 137
>gnl|CDD|197735 smart00454, SAM, Sterile alpha motif. Widespread domain in
signalling and nuclear proteins. In EPH-related tyrosine
kinases, appears to mediate cell-cell initiated signal
transduction via the binding of SH2-containing proteins
to a conserved tyrosine that is phosphorylated. In many
cases mediates homodimerisation.
Length = 68
Score = 68.5 bits (168), Expect = 2e-14
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
V WS E V +W+ IG +YA+NF ++ +DG LLL L E ++GI R++ +
Sbjct: 1 VSQWSPESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRKKILK 60
Query: 566 ELQNLKK 572
+Q LK+
Sbjct: 61 AIQKLKE 67
Score = 36.5 bits (85), Expect = 0.005
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 576 YSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRL 633
S ++ ++L + L Q Y + G+D + L+ E+ + E GI HR
Sbjct: 1 VSQWSPESVADWLESIGLEQ----YADNFRKNGIDGALLLLLTSEEDLKELGITKLGHRK 56
Query: 634 RIMEAIHEIE 643
+I++AI +++
Sbjct: 57 KILKAIQKLK 66
>gnl|CDD|203706 pfam07647, SAM_2, SAM domain (Sterile alpha motif).
Length = 66
Score = 63.1 bits (154), Expect = 1e-12
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFE 564
V WS EDV EW+R IG +YA+NF + + G +LLL+L EE L +GI + R++
Sbjct: 1 VESWSPEDVAEWLRSIGLPQYADNFRDQGITGGELLLRLTEEDL-KALGITSVGHRKKIL 59
Query: 565 RELQNLK 571
+++Q LK
Sbjct: 60 KKIQRLK 66
Score = 36.5 bits (85), Expect = 0.003
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 576 YSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHR 632
S ++ +L + L Q Y + + G+ + + L+EE L GI + HR
Sbjct: 1 VESWSPEDVAEWLRSIGLPQ----YADNFRDQGITGGELLLRLTEEDLK-ALGITSVGHR 55
Query: 633 LRIMEAIHEIE 643
+I++ I ++
Sbjct: 56 KKILKKIQRLK 66
>gnl|CDD|215981 pfam00536, SAM_1, SAM domain (Sterile alpha motif). It has been
suggested that SAM is an evolutionarily conserved
protein binding domain that is involved in the
regulation of numerous developmental processes in
diverse eukaryotes. The SAM domain can potentially
function as a protein interaction module through its
ability to homo- and heterooligomerise with other SAM
domains.
Length = 62
Score = 61.5 bits (150), Expect = 5e-12
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
WS EDV EW+ IG +YA+NF +DGD LL L EE L +G+ R++ +Q
Sbjct: 1 WSVEDVGEWLESIGLGQYADNFRAGYIDGDALLLLTEEDLL-KLGVTLPGHRKKILSSIQ 59
Query: 569 NLK 571
LK
Sbjct: 60 GLK 62
>gnl|CDD|188886 cd09487, SAM_superfamily, SAM (Sterile alpha motif ). SAM (Sterile
Alpha Motif) domain is a module consisting of
approximately 70 amino acids. This domain is found in
the Fungi/Metazoa group and in a restricted number of
bacteria. Proteins with SAM domains are represented by a
wide variety of domain architectures and have different
intracellular localization, including nucleus, cytoplasm
and membranes. SAM domains have diverse functions. They
can interact with proteins, RNAs and membrane lipids,
contain site of phosphorylation and/or kinase docking
site, and play a role in protein homo and hetero
dimerization/oligomerization in processes ranging from
signal transduction to regulation of transcription.
Mutations in SAM domains have been linked to several
diseases.
Length = 56
Score = 60.3 bits (147), Expect = 1e-11
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
DV EW+ +G +YA+ F ++ +DGD LL L +E L+ ++GI + R++ R +Q
Sbjct: 1 DVAEWLESLGLEQYADLFRKNEIDGDALLLLTDEDLK-ELGITSPGHRKKILRAIQ 55
Score = 33.8 bits (78), Expect = 0.023
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 584 LNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHE 641
+ +L +LG Y +D D++ L++E L E GI + HR +I+ AI
Sbjct: 2 VAEWLESLG--LEQYADLFRKNEIDGDALLLLTDEDLK-ELGITSPGHRKKILRAIQR 56
>gnl|CDD|188904 cd09505, SAM_WDSUB1, SAM domain of WDSUB1 proteins. SAM (sterile
alpha motif) domain of WDSUB1 subfamily proteins is a
putative protein-protein interaction domain. Proteins of
this group contain multiple domains: SAM, one or more
WD40 repeats and U-box (derived version of the
RING-finger domain). Apparently the WDSUB1 subfamily
proteins participate in protein degradation through
ubiquitination, since U-box domain are known as a member
of E3 ubiquitin ligase family, while SAM and WD40
domains most probably are responsible for an E2
ubiquitin-conjugating enzyme binding and a target
protein binding.
Length = 72
Score = 52.7 bits (127), Expect = 7e-09
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
WS EDV W+R IG +Y F + +DG LL L +E L D+ I + R + R+++
Sbjct: 5 WSEEDVCTWLRSIGLEQYVEVFRANNIDGKELLNLTKESLSKDLKIESLGHRNKILRKIE 64
Query: 569 NLKKMADY 576
LK +D
Sbjct: 65 ELKMKSDS 72
>gnl|CDD|188914 cd09515, SAM_SGMS1-like, SAM domain of sphingomyelin synthase
related subfamily. SAM (sterile alpha motif) domain of
SGMS-like (sphingomyelin synthase) subfamily is a
potential protein-protein interaction domain. This group
of proteins is related to sphingomyelin synthase 1, and
contains an N-terminal SAM domain. The function of
SGMS1-like proteins is unknown; they may play a role in
sphingolipid metabolism.
Length = 70
Score = 52.6 bits (127), Expect = 9e-09
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVES-RVDGDLLLQLNEEHLRD 550
W+ EDV +W+++ GF++Y + R+DG +LL L EE LR
Sbjct: 4 WTCEDVAKWLKKEGFSKYVDLLCNKHRIDGKVLLSLTEEDLRS 46
>gnl|CDD|188911 cd09512, SAM_Neurabin-like, SAM domain of SAM_Neurabin-like
subfamily. SAM (sterile alpha motif) domain of
Neurabin-like (Neural actin-binding) subfamily is a
putative protein-protein interaction domain. This group
currently includes the SAM domains of neurobin-I, SAMD14
and neurobin-I/SAMD14-like proteins. Most are
multidomain proteins and in addition to SAM domain they
contain other protein-binding domains such as PDZ and
actin-binding domains. Members of this subfamily
participate in signal transduction. Neurabin-I is
involved in the regulation of Ca signaling intensity in
alpha-adrenergic receptors; it forms a functional pair
of opposing regulators with neurabin-II. Neurabins are
expressed almost exclusively in neuronal cells. They are
known to interact with protein phosphatase 1 and inhibit
its activity; they also can bind actin filaments;
however, the exact role of the SAM domain is unclear,
since SAM doesn't participate in these interactions.
Length = 70
Score = 50.3 bits (121), Expect = 5e-08
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 503 SQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRR 562
S+ V WS + V +W+ +G +Y F + +DG LLQL+ L+ +GI + R
Sbjct: 1 SRPVSEWSVQQVCQWLMGLGLEQYIPEFTANNIDGQQLLQLDSSKLK-ALGITSSSDRSL 59
Query: 563 FERELQNLKK 572
+++L+ LK
Sbjct: 60 LKKKLKELKA 69
>gnl|CDD|188929 cd09530, SAM_Samd14, SAM domain of Samd14 subfamily. SAM (sterile
alpha motif) domain of SamD14 (or FAM15A) subfamily is a
putative protein-protein interaction domain. SAM is
widespread domain in proteins involved in signal
transduction and regulation. In many cases SAM mediates
homodimerization/oligomerization. The exact function of
proteins belonging to this subfamily is unknown.
Length = 67
Score = 48.9 bits (117), Expect = 1e-07
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHN 556
W TEDV EW+ +GF +Y F + +DG L+ ++ L +G+ +
Sbjct: 3 WDTEDVAEWIEGLGFPQYRECFTTNFIDGRKLILVDASTL-PRMGVTD 49
>gnl|CDD|188934 cd09535, SAM_BOI-like_fungal, SAM domain of BOI-like fungal
subfamily. SAM (sterile alpha motif) domain of BOI-like
fungal subfamily is a potential protein-protein
interaction domain. Proteins of this subfamily are
apparently scaffold proteins, since most contain SH3 and
PH domains, which are also protein-protein interaction
domains, in addition to SAM domain. BOI-like proteins
participate in cell cycle regulation. In particular
BOI1 and BOI2 proteins of budding yeast S.cerevisiae are
involved in bud formation, and POB1 protein of fission
yeast S.pombe plays a role in cell elongation and
separation. Among binding partners of BOI-like fungal
subfamily members are such proteins as Bem1 and Cdc42
(they are known to be involved in cell polarization and
bud formation).
Length = 65
Score = 47.9 bits (115), Expect = 3e-07
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 509 WSTEDVREWVRQIGFAEY-ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFEREL 567
WS E V EW+ GF + F E+ + GD+LL+L+ E L+ ++ I + +R + E+
Sbjct: 3 WSPEQVAEWLLSAGFDDSVCEKFRENEITGDILLELDLEDLK-ELDIGSFGKRFKLWNEI 61
Query: 568 QNLK 571
++L+
Sbjct: 62 KSLR 65
>gnl|CDD|188908 cd09509, SAM_Polycomb, SAM domain of Polycomb group. SAM (sterile
alpha motif) domain of Polycomb group is a
protein-protein interaction domain. The Polycomb group
includes transcriptional repressors which are involved
in the regulation of some key regulatory genes during
development in many organisms. They are best known for
silencing Hox (Homeobox) genes. Polycomb proteins work
together in large multimeric and chromatin-associated
complexes. They organize chromatin of the target genes
and maintain repressed states during many cell
divisions. Polycomb proteins are classified based on
their common function, but not on conserved domains
and/or motifs; however many Polycomb proteins (members
of PRC1 class complex) contain SAM domains which are
more similar to each other inside of the Polycomb group
than to SAM domains outside of it. Most information
about structure and function of Polycomb SAM domains
comes from studies of Ph (Polyhomeotic) and Scm (Sex
comb on midleg) proteins. Polycomb SAM domains usually
can be found at the C-terminus of the proteins. Some
members of this group contain, in addition to the SAM
domain, MTB repeats, Zn finger, and/or DUF3588 domains.
Polycomb SAM domains can form homo- and/or
heterooligomers through ML and EH surfaces. SAM/SAM
oligomers apparently play a role in transcriptional
repression through polymerization along the chromosome.
Polycomb proteins are known to be highly expressed in
some cells years before their cancer pathology; thus
they are attractive markers for early cancer therapy.
Length = 64
Score = 47.5 bits (114), Expect = 4e-07
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 509 WSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
WS +DV ++++ + G AEYA F E +DG LL L E+ L +G+
Sbjct: 4 WSVDDVAQFIKSLDGCAEYAEVFREQEIDGQALLLLTEDDLLKGMGL 50
>gnl|CDD|188933 cd09534, SAM_Ste11_fungal, SAM domain of Ste11_fungal subfamily.
SAM (sterile alpha motif) domain of Ste11 subfamily is a
protein-protein interaction domain. Proteins of this
subfamily have SAM domain at the N-terminus and protein
kinase domain at the C-terminus. They participate in
regulation of mating pheromone response, invasive growth
and high osmolarity growth response. MAP triple kinase
Ste11 from S.cerevisia is known to interact with Ste20
kinase and Ste50 regulator. These kinases are able to
form homodimers interacting through their SAM domains as
well as heterodimers or heterogenous complexes when
either SAM domain of monomeric or homodimeric form of
Ste11 interacts with Ste50 regulator.
Length = 62
Score = 46.8 bits (112), Expect = 7e-07
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
W E V EW+ ++ +Y + F ++ + GDLLL+L++E L+ ++GI R R R ++
Sbjct: 1 WDEEFVEEWLNELNCGQYLDIFEKNLITGDLLLELDKEALK-ELGITKVGDRIRLLRAIK 59
Query: 569 NLK 571
+L+
Sbjct: 60 SLR 62
>gnl|CDD|188905 cd09506, SAM_Shank1,2,3, SAM domain of Shank1,2,3 family proteins.
SAM (sterile alpha motif) domain of Shank1,2,3 family
proteins is a protein-protein interaction domain.
Shank1,2,3 proteins are scaffold proteins that are known
to interact with a variety of cytoplasmic and membrane
proteins. SAM domains of the Shank1,2,3 family are prone
to homooligomerization. They are highly enriched in the
postsynaptic density, acting as scaffolds to organize
assembly of postsynaptic proteins. SAM domains of Shank3
proteins can form large sheets of helical fibers. Shank
genes show distinct patterns of expression, in rat
Shank1 mRNA is found almost exclusively in brain, Shank2
in brain, kidney and liver, and Shank3 in heart, brain
and spleen.
Length = 66
Score = 45.8 bits (109), Expect = 2e-06
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFE 564
V W+ +DV +W+ + E+ F+++ +DG L L++E L ++G+ R E
Sbjct: 1 PVHEWTVDDVGDWLESLNLGEHRERFMDNEIDGSHLPNLDKEDLT-ELGVTRVGHRMNIE 59
Query: 565 RELQNL 570
R L+ L
Sbjct: 60 RALKKL 65
>gnl|CDD|188967 cd09568, SAM_liprin-alpha1,2,3,4_repeat3, SAM domain of
liprin-alpha1,2,3,4 proteins repeat 3. SAM (sterile
alpha motif) domain repeat 3 of liprin-alpha1,2,3,4
proteins is a protein-protein interaction domain.
Liprin-alpha proteins contain three copies (repeats) of
SAM domain. They may form heterodimers with liprin-beta
proteins through their SAM domains. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development and in axon guidance; in
particular, liprin-alpha is involved in formation of the
presynaptic active zone.
Length = 72
Score = 45.4 bits (108), Expect = 3e-06
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLL-LQLNEEH----LRDDIGIHNGIQR 560
V +WS E V WV+ IG EYANN +ES V G L+ L + L I N R
Sbjct: 2 VLVWSNERVIRWVQSIGLREYANNLLESGVHGALIALDETFDANSFALALQIPTQNTQAR 61
Query: 561 RRFERELQNL 570
+ ERE NL
Sbjct: 62 QILEREFNNL 71
>gnl|CDD|188912 cd09513, SAM_BAR, SAM domain of BAR subfamily. SAM (sterile alpha
motif) domain of BAR (Bifunctional Apoptosis Regulator)
subfamily is a protein-protein interaction domain. In
addition to the SAM domain, this type of regulator has a
RING finger domain. Proteins of this subfamily are
involved in the apoptosis signal network. Their
overexpression in human neuronal cells significantly
protects cells from a broad range of cell death stimuli.
SAM domain can interact with Caspase8, Bcl-2 and Bcl-X
resulting in suppression of Bax-induced cell death.
Length = 71
Score = 45.2 bits (107), Expect = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 509 WSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHL-RDDIGIHNGIQRRRFER 565
W+ E+V W+ Q+G + Y F+ V+G LLL L EE L + I N + RR
Sbjct: 4 WTPEEVVLWLEQLGPWASLYRERFLSENVNGRLLLTLTEEELSKPPFNIENSLHRRAILT 63
Query: 566 ELQNLK 571
EL+ +K
Sbjct: 64 ELERVK 69
>gnl|CDD|188978 cd09579, SAM_Samd7,11, SAM domain of Samd7,11 subfamily of Polycomb
group. SAM (sterile alpha motif) domain is a
protein-protein interaction domain. Phylogenetic
analysis suggests that proteins of this subfamily are
most closely related to SAM-Ph1,2,3 subfamily of
Polycomb group. They are predicted transcriptional
repressors in photoreceptor cells and pinealocytes of
vertebrates. SAM domain containing protein 11 is also
known as Mr-s (major retinal SAM) protein. In mouse, it
is predominantly expressed in developing retinal
photoreceptors and in adult pineal gland. The SAM domain
is involved in homooligomerization of whole proteins (it
was shown based on immunoprecipitation assay and
mutagenesis), however its repression activity is not due
to SAM/SAM interactions but to the C-terminal region.
Length = 68
Score = 44.7 bits (106), Expect = 4e-06
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 509 WSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNG 557
W+ +DV ++ + G AEYA F E +DG+ L L EEHL + +G+ G
Sbjct: 4 WTVDDVCSFIGSLPGCAEYAQVFREHSIDGETLPLLTEEHLLNTMGLKLG 53
>gnl|CDD|188932 cd09533, SAM_Ste50-like_fungal, SAM domain of Ste50_like (ubc2)
subfamily. SAM (sterile alpha motif) domain of
Ste50-like (or Ubc2 for Ustilago bypass of cyclase)
subfamily is a putative protein-protein interaction
domain. This group includes only fungal proteins.
Basidiomycetes have an N-terminal SAM domain, central
UBQ domain, and C-terminal SH3 domain, while Ascomycetes
lack the SH3 domain. Ubc2 of Ustilago maydis is a major
virulence and maize pathogenicity factor. It is required
for filamentous growth (the budding haploid form of
Ustilago maydis is a saprophyte, while filamentous
dikaryotic form is a pathogen). Also the Ubc2 protein is
involved in the pheromone-responsive morphogenesis via
the MAP kinase cascade. The SAM domain is necessary for
ubc2 function; deletion of SAM eliminates this function.
A Lys-to-Glu mutation in the SAM domain of ubc2 gene
induces temperature sensitivity.
Length = 58
Score = 43.8 bits (104), Expect = 8e-06
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
DV +W+ +G +Y + F+E+ + GD+L+ L+ E L+ ++GI
Sbjct: 1 DVADWLSSLGLPQYEDQFIENGITGDVLVALDHEDLK-EMGI 41
>gnl|CDD|188895 cd09496, SAM_liprin-kazrin_repeat3, SAM domain of liprin/kazrin
proteins repeat 3. SAM (sterile alpha motif) domain
repeat 3 of liprin/kazrin proteins is a protein-protein
interaction domain. The long form of liprin/kazrin
proteins contains three copies (repeats) of SAM domain.
Liprin-alpha may form heterodimers with liprin-beta
through their SAM domains. Liprins were originally
identified as LAR (leukocyte common antigen-related)
transmembrane protein-tyrosine phosphatase-interacting
proteins. They participate in mammary gland development
and in axon guidance. In particular, liprin-alpha is
involved in formation of the presynaptic active zone;
liprin-beta is involved in the maintenance of lymphatic
vessel integrity. Kazrins are involved in interplay
between desmosomes and in adherens junctions;
additionally they play a role in regulation of
intercellular differentiation, junction assembly, and
cytoskeletal organization.
Length = 62
Score = 42.5 bits (100), Expect = 3e-05
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 514 VREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGI--HNGIQRRRFERELQ 568
V W+R I EYANN VES V G LL+ + + + I RR E E
Sbjct: 2 VIHWIRSIDLREYANNLVESGVHGGLLVLEPNFDHNTMALVLQIPPQKTQARRHLETEFN 61
Query: 569 N 569
N
Sbjct: 62 N 62
>gnl|CDD|188907 cd09508, SAM_HD, SAM domain of HD-phosphohydrolase. SAM (sterile
alpha motif) domain of SAM_HD subfamily proteins is a
putative protein-protein interaction domain. Proteins of
this group, additionally to the SAM domain, contain a HD
hydrolase domain. Human SAM-HD1 is a nuclear protein
involved in innate immune response and may act as a
negative regulator of the cell-intrinsic antiviral
response. Mutations in this gene lead to
Aicardi-Goutieres syndrome (symptoms include cerebral
atrophy, leukoencephalopathy, hepatosplenomegaly, and
increased production of alpha-interferon).
Length = 70
Score = 40.8 bits (96), Expect = 1e-04
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 507 PLWSTEDVREWVRQIGFA--EYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFE 564
W EDV +++R GF E F E+ + G L L E L +G+ + +R +
Sbjct: 3 RSWDPEDVCQFLRGNGFGEPELLEIFRENEITGAHLPDLTESRLE-KLGVSSLGERLKLL 61
Query: 565 RELQNLK 571
+ LQ L
Sbjct: 62 KCLQKLS 68
>gnl|CDD|188982 cd09583, SAM_Atherin-like, SAM domain of Atherin/Atherin-like
subfamily. SAM (sterile alpha motif) domain of
SAM_Atherin and Atherin-like subfamily proteins is a
putative protein-protein and/or protein-lipid
interaction domain. In addition to the C-terminal SAM
domain, the majority of proteins belonging to this group
also have PHD (or Zn finger) domain. As potential
members of the polycomb group, these proteins may be
involved in regulation of some key regulatory genes
during development. Atherin can be recruited by
Ruk/CIN85 kinase-binding proteins via its SH3 domains
thus participating in the signal transferring kinase
cascades. Also, atherin was found associated with low
density lipids (LDL) in atherosclerotic lesions in
human. It was suggested that atherin plays an essential
role in atherogenesis via immobilization of LDL in the
arterial wall. SAM domains of atherins are predicted to
form polymers. Inhibition of polymer formation could be
a potential antiatherosclerotic therapy.
Length = 69
Score = 40.7 bits (96), Expect = 1e-04
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLN 544
WS EDV ++ + GF E AN F E +DG LL L
Sbjct: 4 WSVEDVVQYFKTAGFPEEANAFKEQEIDGKSLLLLT 39
>gnl|CDD|188976 cd09577, SAM_Ph1,2,3, SAM domain of Ph (polyhomeotic) proteins of
Polycomb group. SAM (sterile alpha motif) domain of Ph
(polyhomeotic) proteins of Polycomb group is a
protein-protein interaction domain. Ph1,2,3 proteins are
members of PRC1 complex. This complex is involved in
transcriptional repression of Hox (Homeobox) cluster
genes. It is recruited through methylated H3Lys27 and
supports the repression state by mediating
monoubiquitination of histone H2A. Proteins of the
Ph1,2,3 subfamily contribute to anterior-posterior
neural tissue specification during embryogenesis.
Additionally, the P2 protein of zebrafish is known to be
involved in epiboly and tailbud formation. SAM domains
of Ph proteins may interact with each other, forming
homooligomers, as well as with SAM domains of other
proteins, in particular with the SAM domain of Scm (sex
comb on midleg) proteins, forming heterooligomers.
Homooligomers are similar to the ones formed by SAM
Pointed domains of the TEL proteins. Such SAM/SAM
oligomers apparently play a role in transcriptional
repression through polymerization along the chromosome.
Length = 69
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 509 WSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHL 548
WS EDV E++R + G ++YA F +DG LL L E+HL
Sbjct: 6 WSVEDVYEFIRSLPGCSDYAEEFRAQEIDGQALLLLKEDHL 46
>gnl|CDD|188969 cd09570, SAM_kazrin_repeat3, SAM domain of kazrin proteins repeat
3. SAM (sterile alpha motif) domain repeat 3 of kazrin
proteins is a protein-protein interaction domain. The
long isoform of kazrins contains three copies (repeats)
of SAM domain. Kazrin can interact with periplakin. It
is involved in interplay between desmosomes and in
adheren junctions. Additionally kazrins play a role in
regulation of intercellular differentiation, junction
assembly, and cytoskeletal organization.
Length = 72
Score = 40.5 bits (95), Expect = 2e-04
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNG--IQRRR 562
+W+ + V +W R I EYA+N +S V G L++ N + + +GI + I RR
Sbjct: 4 VWTNQRVIKWARSIDLKEYADNLRDSGVHGALMVLEPSFNSDTMATALGIPSSKNIIRRH 63
Query: 563 FERELQNL 570
E++ L
Sbjct: 64 LTTEMEAL 71
>gnl|CDD|188928 cd09529, SAM_MLTK, SAM domain of MLTK subfamily. SAM (sterile
alpha motif) domain of MLTK subfamily is a
protein-protein interaction domain. Besides SAM domain,
these proteins have N-terminal protein tyrosine kinase
domain and leucine-zipper motif. Proteins of this group
act as mitogen-activated protein triple kinase in a
number of MAPK cascades. They can be activated by
autophosphorylation in response to stress signals.
MLTK-alpha is known to phosphorylate histone H3. In
mammals, MLTKs participate in the activation of the
JNK/SAPK, p38, ERK5 pathways, the transcriptional factor
NF-kB, in the regulation of the cell cycle checkpoint,
and in the induction of apoptosis in a hepatoma cell
line. Some members of this subfamily are
proto-oncogenes, thus MLTK-alpha is involved in
neoplasmic cell transformation and/or skin cancer
development in athymic nude mice. Based on in vivo
coprecipitation experiments in mammalian cells, it has
been demonstrated that MLTK proteins might form
homodimers/oligomers via their SAM domains.
Length = 71
Score = 40.2 bits (94), Expect = 2e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 9/54 (16%)
Query: 509 WSTEDVREWVRQIG--------FAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
W+ EDV W++Q+ ++YA+ F E+ + G LL L EE LR D+GI
Sbjct: 2 WTEEDVHFWMQQLVRKGGHPSELSQYADLFKENHITGKRLLLLTEEDLR-DMGI 54
>gnl|CDD|188906 cd09507, SAM_DGK-delta-eta, SAM domain of diacylglycerol kinase
delta and eta subunits. SAM (sterile alpha motif)
domain of DGK-eta-delta subfamily proteins is a
protein-protein interaction domain. Proteins of this
subfamily are multidomain diacylglycerol kinases with a
SAM domain located at the C-terminus. DGK proteins
participate in signal transduction. They regulate the
level of second messengers such as diacylglycerol and
phosphatidic acid. The SAM domain of DGK proteins can
form high molecular weight homooligomers through
head-to-tail interactions as well as heterooligomers
between the SAM domains of DGK delta and eta proteins.
The oligomerization plays a role in the regulation of
DGK intracellular localization.
Length = 65
Score = 39.3 bits (92), Expect = 3e-04
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
V W+TE+V W+ + EY + F + + G LL L L+ D+GI
Sbjct: 2 VTNWTTEEVGAWLESLQLGEYRDIFARNDIRGSELLHLERRDLK-DLGI 49
>gnl|CDD|188927 cd09528, SAM_Samd9_Samd9L, SAM domain of Samd9/Samd9L subfamily.
SAM (sterile alpha motif) domain of Samd9/Samd9L
subfamily is a putative protein-protein interaction
domain. SAM is a widespread domain in signaling
proteins. Samd9 is a tumor suppressor gene. It is
involved in death signaling of malignant glioblastoma.
Samd9 suppression blocks cancer cell death induced by
HVJ-E or IFN-beta treatment. Deleterious mutations in
Samd9 lead to normophosphatemic familial tumoral
calcinosis, a cutaneous disorder characterized by
cutaneous calcification or ossification.
Length = 64
Score = 39.3 bits (92), Expect = 3e-04
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 509 WSTEDVREWVRQIGF-AEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNG--IQRRRFER 565
W+ E V++W+ + +YA E V G +L +L EE L D+G+ +G +
Sbjct: 3 WTKEHVKQWLIEDLIDKKYAEILYEEEVTGAVLKELTEEDLV-DMGLPHGPALLIIHSFN 61
Query: 566 EL 567
EL
Sbjct: 62 EL 63
>gnl|CDD|188909 cd09510, SAM_aveugle-like, SAM domain of aveugle-like subfamily.
SAM (sterile alpha motif) domain of SAM_aveugle-like
subfamily is a protein-protein interaction domain. In
Drosophila, the aveugle (AVE) protein (also known as HYP
(Hyphen)) is involved in normal photoreceptor
differentiation, and required for epidermal growth
factor receptor (EGFR) signaling between ras and raf
genes during eye development and wing vein formation.
SAM domain of the HYP(AVE) protein interacts with SAM
domain of CNK, the multidomain scaffold protein
connector enhancer of kinase suppressor of ras.
CNK/HYP(AVE) complex interacts with KSR (kinase
suppressor of Ras) protein. This interaction leads to
stimulation of Ras-dependent Raf activation. This
subfamily also includes vertebrate AVE homologs - Samd10
and Samd12 proteins. Their exact function is unknown,
but they may play a role in signal transduction during
embryogenesis.
Length = 75
Score = 39.6 bits (93), Expect = 4e-04
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 506 VPLWSTEDVREWVRQ---IGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRR 562
V LWS +DV +W+++ + YA F++ + G LL+LN+ L +GI + R+
Sbjct: 3 VYLWSVQDVCKWLKRHCPDYYLLYAELFLQHDITGRALLRLNDNKLE-RMGITDEDHRQD 61
Query: 563 FERELQNLK 571
RE+ L+
Sbjct: 62 ILREILKLR 70
>gnl|CDD|216585 pfam01582, TIR, TIR domain. The Toll/interleukin-1 receptor (TIR)
homology domain is an intracellular signalling domain
found in MyD88, interleukin 1 receptor and the Toll
receptor. It contains three highly-conserved regions,
and mediates protein-protein interactions between the
Toll-like receptors (TLRs) and signal-transduction
components. TIR-like motifs are also found in plant
proteins thought to be involved in resistance to
disease. When activated, TIR domains recruit cytoplasmic
adaptor proteins MyD88 and TOLLIP (Toll interacting
protein). In turn, these associate with various kinases
to set off signalling cascades.
Length = 135
Score = 41.1 bits (97), Expect = 4e-04
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 660 VFISYRRSN-GSQLASLLKVHLELRQFKVFIDVERLEAGKFDN-NLLQSIKQARNFLLVL 717
VF+S+ + S L LE + K+ ID G+ NL ++I+++R +++
Sbjct: 1 VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60
Query: 718 TPK 720
+
Sbjct: 61 SSN 63
>gnl|CDD|188910 cd09511, SAM_CNK1,2,3-suppressor, SAM domain of CNK1,2,3-suppressor
subfamily. SAM (sterile alpha motif) domain of CNK
(connector enhancer of kinase suppressor of ras (Ksr))
subfamily is a protein-protein interaction domain. CNK
proteins are multidomain scaffold proteins containing a
few protein-protein interaction domains and are required
for connecting Rho and Ras signaling pathways. In
Drosophila, the SAM domain of CNK is known to interact
with the SAM domain of the aveugle protein, forming a
heterodimer. Mutation of the SAM domain in human CNK1
abolishes the ability to cooperate with the Ras
effector, supporting the idea that this interaction is
necessary for proper Ras signal transduction.
Length = 69
Score = 38.8 bits (91), Expect = 7e-04
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 506 VPLWSTEDVREWVRQIGFA--EYANNFVESRVDGDLLLQLNEEHLRDDIGIH 555
V WS + V +W++ + +Y F +V G+ LL L+ + L +++G+
Sbjct: 1 VAKWSPKQVTDWLKGLDDCLQQYIYTFEREKVTGEQLLNLSPQDL-ENLGVT 51
>gnl|CDD|188966 cd09567, SAM_kazrin_repeat2, SAM domain of kazrin proteins repeat
2. SAM (sterile alpha motif) domain repeat 2 of kazrin
proteins is a protein-protein interaction domain. The
long isoform of kazrins contains three copies (repeats)
of SAM domain. Kazrin can interact with periplakin. It
is involved in interplay between desmosomes and in
adheren junctions. Additionally kazrins play a role in
regulation of intercellular differentiation, junction
assembly, and cytoskeletal organization.
Length = 65
Score = 37.4 bits (87), Expect = 0.002
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 515 REWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRR 561
REW+R +G +Y+ F E VDG +L L+ R D+ H G+ ++
Sbjct: 9 REWLRDLGLPQYSEAFREHLVDGRVLDTLS----RKDLEKHLGVSKK 51
>gnl|CDD|188968 cd09569, SAM_liprin-beta1,2_repeat3, SAM domain of liprin-beta
proteins repeat 3. SAM (sterile alpha motif) domain
repea t3 of liprin-beta1,2 proteins is a protein-protein
interaction domain. Liprin-beta proteins contain three
copies (repeats) of SAM domain. They may form
heterodimers with liprin-alpha proteins through their
SAM domains. Liprins were originally identified as LAR
(leukocyte common antigen-related) transmembrane
protein-tyrosine phosphatase-interacting proteins. They
participate in mammary gland development, in axon
guidance, and in the maintenance of lymphatic vessel
integrity.
Length = 72
Score = 36.7 bits (85), Expect = 0.004
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL 541
+V LW+ V EW+R + AEYA N S V G L++
Sbjct: 1 EVVLWTNHRVMEWLRSVDLAEYAPNLRGSGVHGALMV 37
>gnl|CDD|188897 cd09498, SAM_caskin1,2_repeat2, SAM domain of caskin protein repeat
2. SAM (sterile alpha motif) domain repeat 2 of
caskin1,2 proteins is a protein-protein interaction
domain. Caskin has two tandem SAM domains. Caskin
protein is known to interact with membrane-associated
guanylate kinase CASK, and may play a role in neural
development, synaptic protein targeting, and regulation
of gene expression.
Length = 71
Score = 36.5 bits (85), Expect = 0.004
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHN-GIQRRR 562
+P + D+ EW+ +G +Y VE+ D D + L E L+ DIGI G Q++
Sbjct: 1 WLPDYPPNDLLEWLSLLGLPQYHKVLVENGYDSIDFVTDLTWEDLQ-DIGITKLGHQKKL 59
Query: 563 FERELQNLKKMADY 576
+ +KK+ D
Sbjct: 60 ----MLAIKKLKDL 69
>gnl|CDD|188974 cd09575, SAM_DGK-delta, SAM domain of diacylglycerol kinase delta.
SAM (sterile alpha motif) domain of DGK-delta subfamily
proteins is a protein-protein interaction domain.
Proteins of this subfamily are multidomain
diacylglycerol kinases with a SAM domain located at the
C-terminus. DGK-delta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic acid.
In particular DGK-delta is involved in the regulation of
clathrin-dependent endocytosis. The SAM domain of
DGK-delta proteins can form high molecular weight
homooligomers through head-to-tail interactions as well
as heterooligomers with the SAM domain of DGK-eta
proteins. The oligomerization plays a role in the
regulation of the DGK-delta intracellular localization:
it inhibits the translocation of the protein to the
plasma membrane from the cytoplasm. The SAM domain also
can bind Zn at multiple (not conserved) sites driving
the formation of highly ordered large sheets of
polymers, thus suggesting that Zn may play important
role in the function of DCK-delta.
Length = 65
Score = 35.7 bits (82), Expect = 0.007
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRD 550
V LW TE+V W+ + EY + F V G LL L L+D
Sbjct: 2 VHLWGTEEVAAWLEHLSLCEYKDIFTRHDVRGSELLHLERRDLKD 46
>gnl|CDD|188924 cd09525, SAM_GAREM, SAM domain of GAREM subfamily. SAM (sterile
alpha motif) domain of GAREM (Grb2-associated and
regulator of Erk/MARK) protein subfamily (also known as
FAM59A) is a putative protein-protein interaction
domain. SAM domain is a widespread domain in signaling
proteins. Proteins of this group have SAM at the
C-terminus. Human GAREM protein is known to play a role
in regulation of the EGF (Epidermal Growth Factor)
receptor and of Gab or insulin preceptor substrate-1
family proteins. Grb2 (Growth factor receptor-bound)
protein was identified as a binding partner of human
GAREM. Proline-rich motifs and phosphorylation of two
conserved tyrosines in GAREM are important for the
interaction with the SH3 domains of Grb2 protein;
however these motifs and residues do not belong to the
SAM domain.
Length = 67
Score = 35.6 bits (82), Expect = 0.009
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 510 STEDVREWVRQIGFAE-YANNFVESRVDGDLLLQLNEEHLRDD 551
S E+V + +R IG +E + FV ++DG+LL+QL EE L +D
Sbjct: 5 SIEEVSKSLRFIGLSEDVVSFFVTEKIDGNLLVQLTEEILSED 47
>gnl|CDD|188962 cd09563, SAM_liprin-beta1,2_repeat1, SAM domain of liprin-beta1,2
proteins repeat 1. SAM (sterile alpha motif) domain
repeat 1 of liprin-beta1,2 proteins is a protein-protein
interaction domain. Liprin-beta protein contain three
copies (repeats) of SAM domain. They may form
heterodimers with liprins-alpha through their SAM
domains. It was suggested based on bioinformatic
approaches that the second SAM domain of liprin-beta is
potentially able to form polymers. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development, in axon guidance, and in the
maintenance of lymphatic vessel integrity.
Length = 64
Score = 34.9 bits (81), Expect = 0.012
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRF 563
WSTE V +W+ ++G +Y + G LL+ + + L ++GI + + R++
Sbjct: 4 WSTEQVCDWLAELGLGQYVDECRRWVKSGQTLLKASPQELEKELGIKHPLHRKKL 58
>gnl|CDD|188961 cd09562, SAM_liprin-alpha1,2,3,4_repeat1, SAM domain of
liprin-alpha1,2,3,4 proteins repeat 1. SAM (sterile
alpha motif) domain repeat 1 of liprin-alpha1,2,3,4
proteins is a protein-protein interaction domain.
Liprin-alpha proteins contain three copies (repeats) of
SAM domain. They may form heterodimers with liprin-beta
proteins through their SAM domains. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development and in axon guidance; in
particular, liprin-alpha is involved in formation of the
presynaptic active zone.
Length = 71
Score = 35.2 bits (81), Expect = 0.014
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 601 SMLNAGVDKDSI-KALSEEQLICECGIHNSIHRLRIMEAIHEI 642
+ A V +I ALS+ ++ E GI N +HRL++ AI E+
Sbjct: 25 AACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM 67
>gnl|CDD|188979 cd09580, SAM_Scm-like-4MBT, SAM domain of Scm-like-4MBT proteins of
Polycomb group. SAM (sterile alpha motif) domain of
Scm-like-4MBT (Sex comb on midleg like, Malignant Brain
Tumor) subfamily proteins of the polycomb group is a
putative protein-protein interaction domain.
Additionally to the SAM domain, most of the proteins of
this subfamily have 4 MBT repeats. In Drosophila
SAM-Scm-like-4MBT protein (known as dSfmbt) is a member
of Pho repressive complex (PhoRC). Additionally to
dSfmbt, the PhoRC complex includes Pho or Pho-like
proteins. This complex is responsible for HOX (Homeobox)
gene silencing: Pho or Pho-like proteins bind DNA and
dSmbt binds methylated histones. dSmbt can interact with
mono- and di-methylated histones H3 and H4 (however this
activity has been shown for the MBT repeats, while exact
function of the SAM domain is unclear). Besides
interaction with histones, dSmbt can interact with Scm
(a member of PRC complex), but this interaction also
seems to be SAM domain independent.
Length = 67
Score = 34.7 bits (80), Expect = 0.019
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
W +DV +++R+ Y F +DG LL L +E + G+ G + ++ +Q
Sbjct: 4 WGVKDVSQFLRENDCGAYCECFCRQNIDGKRLLSLTKEQIMTLTGMKVGPSLKIYD-LIQ 62
Query: 569 NLK 571
LK
Sbjct: 63 QLK 65
>gnl|CDD|188975 cd09576, SAM_DGK-eta, SAM domain of diacylglycerol kinase eta. SAM
(sterile alpha motif) domain of DGK-eta subfamily
proteins is a protein-protein interaction domain.
Proteins of this subfamily are multidomain
diacylglycerol kinases. The SAM domain is located at the
C-terminus of two out of three isoforms of DGK-eta
protein. DGK-eta proteins participate in signal
transduction. They regulate the level of second
messengers such as diacylglycerol and phosphatidic acid.
The SAM domain of DCK-eta proteins can form high
molecular weight homooligomers through head-to-tail
interactions as well as heterooligomers with the SAM
domain of DGK-delta proteins. The oligomerization plays
a role in the regulation of the DGK-delta intracellular
localization: it is responsible for sustained endosomal
localization of the protein and resulted in negative
regulation of DCK-eta catalytic activity.
Length = 65
Score = 34.6 bits (79), Expect = 0.020
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
V W T++V W+ + EY F+ + G LL L L+ D+GI + +R
Sbjct: 2 VQKWGTDEVAAWLDLLSLGEYKEIFIRHDIRGSELLHLERRDLK-DLGI---PKVGHMKR 57
Query: 566 ELQNLKKM 573
LQ +K++
Sbjct: 58 ILQGIKEL 65
>gnl|CDD|188903 cd09504, SAM_STIM-1,2-like, SAM domain of STIM-1,2-like proteins.
SAM (sterile alpha motif) domain of STIM-1,2-like
(Stromal interaction molecule) proteins is a putative
protein-protein interaction domain. STIM1 and STIM2
human proteins are type I transmembrane proteins. The
N-terminal part of them includes "hidden" EF-hand and
SAM domains. This region is responsible for sensing
changes in store-operated and basal cytoplasmic Ca2+
levels and initiates oligomerization. "Hidden" EF hand
and SAM domains have a stable intramolecular
association, and the SAM domain is a component that
regulates stability within STIM proteins.
Destabilization of the EF-SAM association during Ca2+
depletion leads to partial unfolding and aggregation
(homooligomerization), thus activating the
store-operated Ca2+ entry. Immunoprecipitation analysis
indicates that STIM1 and STIM2 can form co-precipitable
oligomeric associations in vivo. It was suggested that
STIM1 and STIM2 are involved in opposite regulation of
store operated channels in plasma membrane.
Length = 74
Score = 34.6 bits (80), Expect = 0.024
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 509 WSTEDVREW-VRQIGFAEYANNFVESRVDGDLL--LQLNEEH-LRDDIGIHNGIQRRR 562
W+ ED EW V + +Y F E+ VDG L L +N L +GI + I R++
Sbjct: 5 WTVEDTVEWLVNSVELPQYVEAFKENGVDGSALPRLAVNNPSFLTSVLGIKDPIHRQK 62
>gnl|CDD|188926 cd09527, SAM_Samd5, SAM domain of Samd5 subfamily. SAM (sterile
alpha motif) domain of Samd5 subfamily is a putative
protein-protein interaction domain. Proteins of this
subfamily have a SAM domain at the N-terminus. SAM is a
widespread domain in signaling and regulatory proteins.
In many cases SAM mediates dimerization/oligomerization.
The exact function of proteins belonging to this
subfamily is unknown.
Length = 63
Score = 34.0 bits (78), Expect = 0.025
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 514 VREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
V +W+R + +YA FV++ D ++ Q+ + L D IG+ N R+R ++ LK
Sbjct: 5 VYDWLRTLQLEQYAEKFVDNGYDDLEVCKQIGDPDL-DAIGVMNPAHRKRILEAVRRLK 62
>gnl|CDD|188930 cd09531, SAM_CS047, SAM domain of CS047 subfamily. SAM (sterile
alpha motif) domain of CS047 subfamily is a putative
protein-protein interaction domain. Proteins of this
subfamily have a SAM domain at the N-terminus. SAM is a
widespread domain in signaling and regulatory proteins.
In many cases SAM mediates
homodimerization/oligomerization. The exact function of
proteins belonging to this group is unknown.
Length = 65
Score = 34.2 bits (79), Expect = 0.026
Identities = 15/31 (48%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 524 AEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
A+YA FVE+R+ ++LL LN+E L+ ++GI
Sbjct: 19 AKYAVIFVENRIQKEMLLDLNKEILK-EMGI 48
>gnl|CDD|188913 cd09514, SAM_SGMS1, SAM domain of sphingomyelin synthase. SAM
(sterile alpha motif) domain of SGMS-1 (sphingomyelin
synthase) subfamily is a potential protein-protein
interaction domain. Sphingomyelin synthase 1 is a
transmembrane protein with a SAM domain at the
N-terminus and a catalytic domain at the C-terminus.
Sphingomyelin synthase 1 is a Golgi-associated enzyme,
and depending on the concentration of diacylglycerol and
ceramide, can catalyze synthesis phosphocholine or
sphingomyelin, respectively. It plays a central role in
sphingolipid and glycerophospholipid metabolism.
Length = 72
Score = 34.0 bits (78), Expect = 0.030
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEE 546
++V WS ++V +W+ + G EY+ DG LL L EE
Sbjct: 2 KEVVQWSPKEVSDWLSEEGMQEYSEALRS--FDGQALLNLTEE 42
>gnl|CDD|188981 cd09582, SAM_Scm-like-3MBT3,4, SAM domain of Scm-like-3MBT3,4
proteins of Polycomb group. SAM (sterile alpha motif)
domain of Scm-like-3MBT3,4 (Sex comb on midleg,
Malignant brain tumor) subfamily proteins (also known as
L3mbtl3,4 proteins) is a putative protein-protein
interaction domain. Proteins of this subfamily are
predicted transcriptional regulators belonging to
Polycomb group. The majority of them are multidomain
proteins: in addition to the C-terminal SAM domain, they
contain three MBT repeats and Zn finger domain. Murine
L3mbtl3 protein of this subfamily is essential for
maturation of myeloid progenitor cells during
differentiation. Human L3mbtl4 is a potential tumor
suppressor gene in breast cancer, while deregulation of
L3MBTL3 is associated with neuroblastoma.
Length = 66
Score = 33.8 bits (78), Expect = 0.030
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 509 WSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
WS ++V E+V+ + G E+A F + ++DG+ L L + L +GI
Sbjct: 4 WSVDEVAEFVQSLPGCEEHAKVFRDEQIDGEAFLLLTQSDLVKILGI 50
>gnl|CDD|188889 cd09490, SAM_Arap1,2,3, SAM domain of Arap1,2,3 (angiotensin
receptor-associated protein). SAM (sterile alpha motif)
domain of Arap1,2,3 subfamily proteins (angiotensin
receptor-associated) is a protein-protein interaction
domain. Arap1,2,3 proteins are
phosphatidylinositol-3,4,5-trisphosphate-dependent
GTPase-activating proteins. They are involved in
phosphatidylinositol-3 kinase (PI3K) signaling pathways.
In addition to SAM domain, Arap1,2,3 proteins contain
ArfGap, PH-like, RhoGAP and UBQ domains. SAM domain of
Arap3 protein was shown to interact with SAM domain of
Ship2 phosphatidylinositol-trisphosphate phosphatase
proteins. Such interaction apparently plays a role in
inhibition of PI3K regulated pathways since Ship2
converts PI(3,4,5)P3 into PI(3,4)P2. Proteins of this
subfamily participate in regulation of signaling and
trafficking associated with a number of different
receptors (including EGFR, TRAIL-R1/DR4, TRAIL-R2/DR5)
in normal and cancer cells; they are involved in
regulation of actin cytoskeleton remodeling, cell
spreading and formation of lamellipodia.
Length = 63
Score = 33.4 bits (77), Expect = 0.042
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDGDLLLQ----LNEEHLRDDIGIHNGIQRRRFERELQ 568
D+ EW+ I +Y + F E G + +N+ L+ IGI RRR ++L
Sbjct: 5 DIAEWLASIHLEQYLDLFREH---GYVTATDCQGINDSRLK-QIGISPTGHRRRILKQLP 60
>gnl|CDD|188964 cd09565, SAM_liprin-alpha1,2,3,4_repeat2, SAM domain of
liprin-alpha1,2,3,4 proteins repeat 2. SAM (sterile
alpha motif) domain repeat 2 of liprin-alpha1,2,3,4
proteins is a protein-protein interaction domain.
Liprin-alpha proteins contain three copies (repeats) of
SAM domain. They may form heterodimers with liprin-beta
proteins through their SAM domains. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development, and in axon guidance; in
particular, liprin-alpha is involved in formation of the
presynaptic active zone.
Length = 66
Score = 33.2 bits (76), Expect = 0.061
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 516 EWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM 573
EW+ +G +Y + F+E VD +L L ++ LR + + + R + + LK++
Sbjct: 9 EWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRTHLKMVDSFHRTSLQYGILCLKRL 66
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats. An approximately
40 amino acid long tandemly repeated sequence motif
first identified in the Drosophila segment polarity gene
armadillo; these repeats were also found in the
mammalian armadillo homolog beta-catenin, the junctional
plaque protein plakoglobin, the adenomatous polyposis
coli (APC) tumor suppressor protein, and a number of
other proteins. ARM has been implicated in mediating
protein-protein interactions, but no common features
among the target proteins recognized by the ARM repeats
have been identified; related to the HEAT domain; three
consecutive copies of the repeat are represented by this
alignment model.
Length = 120
Score = 34.2 bits (79), Expect = 0.076
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 294 DVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRK-VPVWLFPLAF 352
VI GGL ++ +D R A AL+NLS G +N +A+++ +P L L
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSA-GNNDNIQAVVEAGGLPA-LVQLLK 59
Query: 353 HNDDNIKYYACLAIAVLVANTEIEAAVLKS 382
D+ + A A+ L A E ++
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLE 89
Score = 30.0 bits (68), Expect = 2.4
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 32/134 (23%)
Query: 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDH---VVENGL----------- 254
+ GG+ L+S D ++Q +A L L+ N D+ VVE G
Sbjct: 3 VIQAGGLPALVSLLSSSDENVQREAAWAL-SNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 255 -DKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDI 313
++VV+ A +N+ + V+ GG+ ++ ++
Sbjct: 62 DEEVVKAALWALRNL---------------AAGPEDNK-LIVLEAGGVPKLVNLLDSSNE 105
Query: 314 ETLRHCAGALANLS 327
+ ++ GAL+NL+
Sbjct: 106 DIQKNATGALSNLA 119
Score = 28.4 bits (64), Expect = 6.7
Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 23/122 (18%)
Query: 336 EAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLD 395
EA+I+ L L +D+N++ A A++ L A AV+++G L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNND--------NIQAVVEAGGLP 52
Query: 396 -LVEPFVMSHSPSEF------AKSNLAHAHGQNR------NWLQKLVPVLSSKREEARNL 442
LV+ ++ E A NLA N+ + KLV +L S E+ +
Sbjct: 53 ALVQ--LLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKN 110
Query: 443 AA 444
A
Sbjct: 111 AT 112
>gnl|CDD|188894 cd09495, SAM_liprin-kazrin_repeat2, SAM domain of liprin/kazrin
proteins repeat 2. SAM (sterile alpha motif) domain
repeat 2 of liprin/kazrin proteins is a protein-protein
interaction domain. The long form of liprin/kazrin
proteins contains three copies (repeats) of SAM domain.
Liprin-alpha may form heterodimers with liprin-beta
through their SAM domains. Liprins were originally
identified as LAR (leukocyte common antigen-related)
transmembrane protein-tyrosine phosphatase-interacting
proteins. They participate in mammary gland development
and in axon guidance. In particular, liprin-alpha is
involved in formation of the presynaptic active zone;
liprin-beta is involved in the maintenance of lymphatic
vessel integrity. Kazrins are involved in interplay
between desmosomes and in adheren junctions;
additionally they play a role in regulation of
intercellular differentiation, junction assembly, and
cytoskeletal organization.
Length = 60
Score = 32.1 bits (73), Expect = 0.12
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 514 VREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLR 549
V W+ IG +Y + F ES VD +L L L
Sbjct: 3 VTRWLDDIGLPQYKDQFHESLVDRRMLQYLTVNDLL 38
>gnl|CDD|188896 cd09497, SAM_caskin1,2_repeat1, SAM domain of caskin protein repeat
1. SAM (sterile alpha motif) domain repeat 1 of
caskin1,2 proteins is a protein-protein interaction
domain. Caskin has two tandem SAM domains. Caskin
protein is known to interact with membrane-associated
guanylate kinase CASK, and apparently may play a role in
neural development, synaptic protein targeting, and
regulation of gene expression.
Length = 66
Score = 31.8 bits (73), Expect = 0.16
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQN 569
E + +W+R+ G EY NF+++ D + ++ E L IGI R++ + E+
Sbjct: 3 DAEAIFDWLREFGLEEYTPNFIKAGYDLPTISRMTPEDL-TAIGITKPGHRKKLKSEIAQ 61
Query: 570 LKK 572
L+
Sbjct: 62 LQI 64
Score = 29.1 bits (66), Expect = 1.5
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 586 NFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIH 640
++L G YT + + AG D +I ++ E L GI HR ++ I
Sbjct: 9 DWLREFG--LEEYTPNFIKAGYDLPTISRMTPEDLTA-IGITKPGHRKKLKSEIA 60
>gnl|CDD|188925 cd09526, SAM_Samd3, SAM domain of Samd3 subfamily. SAM (sterile
alpha motif) domain of the Samd3 subfamily is a putative
protein-protein interaction domain. Proteins of this
subfamily have a SAM domain at the N-terminus. SAM is a
widespread domain in signaling and regulatory proteins.
In many cases SAM mediates dimerization/oligomerization.
Exact function of proteins belonging to this subfamily
is unknown.
Length = 66
Score = 31.2 bits (70), Expect = 0.33
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNE 545
WS E V W+ + E F E V G LL LN+
Sbjct: 4 WSVEQVCNWLVEKNLGELVPRFQEEEVSGAALLALND 40
>gnl|CDD|188918 cd09519, SAM_ANKS3, SAM domain of ANKS3 subfamily. SAM (sterile
alpha motif) domain of ANKS3 subfamily is a potential
protein-protein interaction domain. Proteins of this
subfamily have N-terminal ankyrin repeats and a
C-terminal SAM domain. SAM is a widespread domain in
signaling proteins. In many cases it mediates
homo-dimerization/oligomerization.
Length = 64
Score = 30.5 bits (69), Expect = 0.41
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRR 562
+D+ E + QIG ++Y F E +D + L L E L+ +IGI +R+
Sbjct: 5 KDLSELLEQIGCSKYLPIFEEQDIDLRIFLTLTESDLK-EIGITLFGPKRK 54
>gnl|CDD|188898 cd09499, SAM_AIDA1AB-like_repeat1, SAM domain of AIDA1AB-like
proteins, repeat 1. SAM (sterile alpha motif) domain
repeat 1 of AIDA1AB-like proteins is a protein-protein
interaction domain. AIDA1AB-like proteins have two
tandem SAM domains. They may form an intramolecular
head-to-tail homodimer. One of two basic motifs of the
nuclear localization signal (NLS) is located within
helix 5 of SAM2 (motif HKRK). This signal plays a role
in decoupling of SAM2 from SAM1, thus facilitating
translocation of this type proteins into the nucleus.
SAM1 domain has a potential phosphorylation site for
CMGC group of serine/threonine kinases. SAM domains of
the AIDA1-like subfamily can directly bind ubiquitin and
participate in regulating the degradation of
ubiquitinated EphA receptors, particularly EPH-A8
receptor. Additionally AIDA1AB-like proteins may
participate in the regulation of nucleoplasmic coilin
protein interactions.
Length = 67
Score = 30.3 bits (69), Expect = 0.67
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 514 VREWVRQIGFAEYANNFVESRVDGDLLLQ---LNEEHLRDDIGIHNGIQRRRFERELQNL 570
V +W+ IG +Y + + + D L + ++ L++ IGI + R+ + ++L
Sbjct: 5 VGQWLESIGLPQYESKLLLNGFDDVDFLGSGVMEDQDLKE-IGITDEQHRQIILQAARSL 63
Query: 571 KKM 573
K
Sbjct: 64 PKK 66
>gnl|CDD|188965 cd09566, SAM_liprin-beta1,2_repeat2, SAM domain of liprin-beta1,2
proteins repeat 2. SAM (sterile alpha motif) domain
repeat 2 of liprin-beta1,2 proteins is a protein-protein
interaction domain. Liprin-beta proteins contain three
copies (repeats) of SAM domain. They may form
heterodimers with liprin-alpha proteins through their
SAM domains. It was suggested based on bioinformatic
approaches that the second SAM domain of liprin-beta
potentially is able to form polymers. Liprins were
originally identified as LAR (leukocyte common
antigen-related) transmembrane protein-tyrosine
phosphatase-interacting proteins. They participate in
mammary gland development, in axon guidance, and in the
maintenance of lymphatic vessel integrity.
Length = 63
Score = 29.6 bits (67), Expect = 0.96
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHL 548
T V W+ IG +Y + F E++VDG +L L + L
Sbjct: 1 KLDTHWVLRWLDDIGLPQYKDAFSEAKVDGRMLHYLTVDDL 41
>gnl|CDD|226776 COG4326, Spo0M, Sporulation control protein [General function
prediction only].
Length = 270
Score = 31.8 bits (72), Expect = 1.4
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 68 MSHMVNGTTTSTKMITSSASSSGISAAQIDEILNLDFDDLEKLSKNSLVSQQNIDAIIAK 127
++ + S +S GI AA++D + L + L Q++ I+
Sbjct: 7 LTMQFSQQEVSMSFFKKLLASFGIGAAKVDTV----------LQQEVLYPGQSVKGIVHV 56
Query: 128 YTGCLENIVQD 138
Y G + +
Sbjct: 57 YGGATAQDIDN 67
>gnl|CDD|226848 COG4424, COG4424, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 250
Score = 31.0 bits (70), Expect = 2.5
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 11/106 (10%)
Query: 420 QNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIF--KEIGAIEPLKKVAS 477
Q WL +L+ L EA A+ EA I K +F K + + L + +
Sbjct: 42 QPSEWLAQLLDPLDPGTPEAATPVAW---FEAAITKGSTPNGVFGLKLMRNQDALLQQLA 98
Query: 478 CPNAVASKYAAQTLRLIGETV------PHKLSQQVPLWSTEDVREW 517
S + GE + P K+SQ V LW W
Sbjct: 99 VQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQAVSLWRAVQTGLW 144
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 29.9 bits (68), Expect = 5.1
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 468 AIEPLKKVASC-PNAV-ASKYAAQTLRLIGETVPHK--LSQQVPLWSTEDVREWVR 519
AIE +++A P V A+ +A+ GE + PL+++ED +E V+
Sbjct: 187 AIELAERIARAAPLGVQATLASARAAVREGEAAAAAQLPPELRPLFTSEDAKEGVQ 242
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 30.6 bits (69), Expect = 5.4
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 864 RRRKSSSPSPYLPSHTSWRPPTSPKSQQLRRKGPGNMPVRAHSLEGLIEPAP 915
+ S+ P+ + + PP K + P + R S++ L P
Sbjct: 435 QNHYSAPPTVSIQPPSGPVPPKPEKEVLSDSRPPDYLMSR--SVDHLERPTS 484
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase. Phosphite
dehydrogenase (PTDH), a member of the D-specific
2-hydroxyacid dehydrogenase family, catalyzes the
NAD-dependent formation of phosphate from phosphite
(hydrogen phosphonate). PTDH has been suggested as a
potential enzyme for cofactor regeneration systems. The
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD-binding
domain.
Length = 318
Score = 29.9 bits (68), Expect = 7.0
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 736 WVHREIVAALQSGCNIIPILDNFAWPDPE--QLPADMRAICKF 776
VH E++ L+ C +I + E + D + F
Sbjct: 9 KVHPEVLELLKPHCEVISNQTDEPLSREELLRRCKDADGLMAF 51
>gnl|CDD|223892 COG0822, IscU, NifU homolog involved in Fe-S cluster formation
[Energy production and conversion].
Length = 150
Score = 28.9 bits (65), Expect = 7.7
Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 49 NIKFTTKGMTKSLMTSASQMSHMVNGTT------TSTKMITSSASSSGISAAQIDEILNL 102
+ KF G + S+S M+ +V G T + + G ++ +++ L
Sbjct: 56 DAKFKGFGCA-ISIASSSMMTELVKGKTLDEALKITEAFTDMAKELGGDPDDRLGDLVAL 114
Query: 103 -DFDDLEKLSKNSLVSQQNIDAIIAKYTG 130
K SL++ + A I Y G
Sbjct: 115 AGVALPPARIKCSLLAWDALKAAIKDYKG 143
>gnl|CDD|149039 pfam07755, DUF1611, Protein of unknown function (DUF1611). This
region is found in a number of hypothetical bacterial
and archaeal proteins. The region is approximately 350
residues long. A member of this family is thought to
associate with another subunit to form an
H+-transporting ATPase, but no evidence has been found
to support this.
Length = 302
Score = 29.4 bits (67), Expect = 8.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 735 DWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHD 784
W ++ AL++G +++ L F DPE + A K +GV I D
Sbjct: 51 AWR-EVLLEALEAGLDVVSGLHEFLSDDPE-----LAAAAKKHGV-QIID 93
>gnl|CDD|222008 pfam13252, DUF4043, Protein of unknown function (DUF4043). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 369 and
424 amino acids in length. There is a single completely
conserved residue G that may be functionally important.
Length = 342
Score = 29.6 bits (67), Expect = 8.9
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 767 PADMRAICKFNGVRWIHDYQDACVDKLERF-----MRGELNSYRSALSVKSDPPSTPNIL 821
P D+R + + W D D F RG+ + + + DP +
Sbjct: 75 PHDLRKEARDSLADWFADRLDQLF-----FVHLAGARGDNEDFDWVVPLAEDPKFDGIAV 129
Query: 822 NKVNAPTYQR 831
N V+APT R
Sbjct: 130 NDVSAPTADR 139
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.131 0.377
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 48,220,932
Number of extensions: 4708022
Number of successful extensions: 4290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4270
Number of HSP's successfully gapped: 86
Length of query: 979
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 873
Effective length of database: 6,236,078
Effective search space: 5444096094
Effective search space used: 5444096094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.4 bits)