RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4858
(979 letters)
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Length = 265
Score = 179 bits (454), Expect = 7e-51
Identities = 42/259 (16%), Positives = 89/259 (34%), Gaps = 25/259 (9%)
Query: 500 HKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQ 559
L W+ E V W+ + G Y ++ + G LLQ +++ L ++GI + +
Sbjct: 9 SDLDMPFAKWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKELGIKHSLH 68
Query: 560 RRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQ 619
R++ + LQ L + + + Y VD + ++ +
Sbjct: 69 RKKLQLALQALGSEEETNYGKLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMTVDD 128
Query: 620 LICECGIHNSIHRLRIMEAIHEIER-EWNKEY--------EDNPDKNLDVFISYRRSNGS 670
L+ + + +H L I AI + + + + ++R
Sbjct: 129 LL-SLKVVSVLHHLSIKRAIQVLRINNFEPNCLRRRPSDENSITPSEVQQWTNHRVMEWL 187
Query: 671 QLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQ------------ARNFLLVLT 718
+ L + LR V + LE +F+ + + A +F L++
Sbjct: 188 RSVDLAEYAPNLRGSGVHGGLMVLEP-RFNVETMAQLLNIPPNKTLLRRHLATHFNLLIG 246
Query: 719 PKALDRCMEDNESECKDWV 737
+A + + E D+V
Sbjct: 247 AEAQHQKRDAM--ELPDYV 263
Score = 52.1 bits (124), Expect = 3e-07
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 21/129 (16%)
Query: 468 AIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYA 527
AI+ L+ PN + + + + +V W+ V EW+R + AEYA
Sbjct: 146 AIQVLRINNFEPNCLRRRPSDE---------NSITPSEVQQWTNHRVMEWLRSVDLAEYA 196
Query: 528 NNFVESRVDGDLLL---QLNEEHLRDDIGI--HNGIQRRRFERELQNL-------KKMAD 575
N S V G L++ + N E + + I + + RR L +K
Sbjct: 197 PNLRGSGVHGGLMVLEPRFNVETMAQLLNIPPNKTLLRRHLATHFNLLIGAEAQHQKRDA 256
Query: 576 YSSKDVTNL 584
D L
Sbjct: 257 MELPDYVLL 265
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, tandem, signaling protein, alternative
splicing, ANK repeat; NMR {Homo sapiens}
Length = 148
Score = 111 bits (279), Expect = 7e-29
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRD--DIGIH 555
+ H VP S + V +W+ IG +Y N+ + + D + N +D +IGI
Sbjct: 1 MHHHHHHLVPRGSVQTVGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLLEIGIL 60
Query: 556 NGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGV-DKDSIKA 614
N R+R + +Q L KM + E YT + L G D +K
Sbjct: 61 NSGHRQRILQAIQLLPKMRPIGHDGAHPTSVAEWLDSIELGDYTKAFLINGYTSMDLLKK 120
Query: 615 LSEEQLICECGIHNSIHRLRIMEAIHE 641
++E +LI I+ HR RI+ ++ +
Sbjct: 121 IAEVELINVLKINLIGHRKRILASLGD 147
Score = 46.3 bits (109), Expect = 5e-06
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 482 VASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLL 540
+ + Q + + +P V EW+ I +Y F+ + DLL
Sbjct: 59 ILNSGHRQRILQAIQLLPKMRPIGHDGAHPTSVAEWLDSIELGDYTKAFLINGYTSMDLL 118
Query: 541 LQLNEEHLRDDIGIHNGIQRRRFERELQN 569
++ E L + + I+ R+R L +
Sbjct: 119 KKIAEVELINVLKINLIGHRKRILASLGD 147
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling
protein; 2.40A {Homo sapiens} PDB: 3sen_A
Length = 149
Score = 102 bits (255), Expect = 1e-25
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
Query: 502 LSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRR 561
+ + S+E V +W+ YA NF+ + D + ++ E L IG+ R+
Sbjct: 1 MEKTREGKSSEAVSQWLTAFQLQLYAPNFISAGYDLPTISRMTPEDLT-AIGVTKPGHRK 59
Query: 562 RFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQL 620
+ E+ L NL +L +G + Y +++ G + D I ++ E L
Sbjct: 60 KIAAEISGLSIPDWLPEHKPANLAVWLSMIG--LAQYYKVLVDNGYENIDFITDITWEDL 117
Query: 621 ICECGIHNSIHRLRIMEAIHEIEREWNKEYE 651
E GI H+ ++M A+ ++ +
Sbjct: 118 Q-EIGITKLGHQKKLMLAVRKLAELRRHHHH 147
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction,
protein binding; NMR {Rattus norvegicus}
Length = 74
Score = 93.9 bits (234), Expect = 1e-23
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFE 564
V WS + V W+ + +Y + F + G+ LLQL+ L+ +G+ + R +
Sbjct: 3 MVHEWSVQQVSHWLVGLSLDQYVSEFSAQNISGEQLLQLDGNKLK-ALGMTSSQDRALVK 61
Query: 565 RELQNLKKMADYS 577
++L+ +K + +
Sbjct: 62 KKLKEMKMSLEKA 74
Score = 36.9 bits (86), Expect = 0.002
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 574 ADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRL 633
++S + V++ +L+ L Y + + + L +L G+ +S R
Sbjct: 5 HEWSVQQVSH---WLVGLS--LDQYVSEFSAQNISGEQLLQLDGNKLK-ALGMTSSQDRA 58
Query: 634 RIMEAIHEIEREWNK 648
+ + + E++ K
Sbjct: 59 LVKKKLKEMKMSLEK 73
>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 91
Score = 91.2 bits (226), Expect = 2e-22
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 500 HKLSQQVPLWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHL-RDDIGIHN 556
+ + V W+TE+V W+ Q+G + Y + F+ RV+G LLL L EE R I N
Sbjct: 11 LLVHKAVDKWTTEEVVLWLEQLGPWASLYRDRFLSERVNGRLLLTLTEEEFSRAPYTIEN 70
Query: 557 GIQRRRFERELQNLK 571
RR EL+ ++
Sbjct: 71 SSHRRVILTELERVR 85
Score = 44.2 bits (104), Expect = 1e-05
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 557 GIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALS 616
G E L K + +++++V +L LG S+Y L+ V+ + L+
Sbjct: 1 GSSGSSGEHGLLVHKAVDKWTTEEVVL---WLEQLGPWASLYRDRFLSERVNGRLLLTLT 57
Query: 617 EEQL-ICECGIHNSIHRLRIMEAIHEI 642
EE+ I NS HR I+ + +
Sbjct: 58 EEEFSRAPYTIENSSHRRVILTELERV 84
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo
sapiens} PDB: 3tad_A
Length = 334
Score = 93.4 bits (231), Expect = 1e-20
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 14/133 (10%)
Query: 469 IEPLKKVASCPNAVASKYAAQTLRLIG---------ETVPHKLSQQVPLWSTEDVREWVR 519
+ K+ + + +Y L+ + + V +WS + V W++
Sbjct: 200 LRVHLKMVDSFHRTSLQYGIMCLKRLNYDRKELERRREASQHEIKDVLVWSNDRVIRWIQ 259
Query: 520 QIGFAEYANNFVESRVDGDLLLQLNEEH-----LRDDIGIHNGIQRRRFERELQNLKKMA 574
IG EYANN +ES V G L+ L I N R+ ERE NL +
Sbjct: 260 AIGLREYANNILESGVHGSLIALDENFDYSSLALLLQIPTQNTQARQILEREYNNLLALG 319
Query: 575 DYSSKDVTNLNNF 587
D ++ NF
Sbjct: 320 TERRLDESDDKNF 332
Score = 58.8 bits (141), Expect = 3e-09
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 25/141 (17%)
Query: 515 REWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKKM- 573
EW+ +G +Y + F+E VD +L L ++ LR + + + R + + LK++
Sbjct: 167 NEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHLKMVDSFHRTSLQYGIMCLKRLN 226
Query: 574 ------------ADYSSKDVTNLNN-----FLLNLGQEFSIYTYSMLNAGVDKDSIKALS 616
+ + KDV +N ++ +G Y ++L +GV I
Sbjct: 227 YDRKELERRREASQHEIKDVLVWSNDRVIRWIQAIG--LREYANNILESGVHGSLIALDE 284
Query: 617 EE-----QLICECGIHNSIHR 632
L+ + N+ R
Sbjct: 285 NFDYSSLALLLQIPTQNTQAR 305
Score = 51.1 bits (121), Expect = 1e-06
Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 52/210 (24%)
Query: 487 AAQTLRLIGETVPHKLSQQVPL--WSTEDVREWVRQ-IGF-AEYANNFVESRVDGDLLLQ 542
+ L+ E + + +P W V W+ +G A Y + G ++
Sbjct: 15 KDRRLKKKHELLEEARRKGLPFAQWDGPTVVAWLELWLGMPAWYVAACRANVKSGAIMSA 74
Query: 543 LNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQE-------- 594
L++ ++ +IGI N + R + +Q + + S+ + + + + E
Sbjct: 75 LSDTEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPPTSRTPSGNVWVTHEEMENLAAQ 134
Query: 595 ----------------------------------------FSIYTYSMLNAGVDKDSIKA 614
Y + VD +
Sbjct: 135 AKTKESEEGSWAQCPVFLQTLAYGDMNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDH 194
Query: 615 LSEEQLICECGIHNSIHRLRIMEAIHEIER 644
L+++ L + +S HR + I ++R
Sbjct: 195 LTKKDLRVHLKMVDSFHRTSLQYGIMCLKR 224
Score = 28.7 bits (63), Expect = 9.7
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 589 LNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645
L LG + Y + + ALS+ ++ E GI N +HRL++ AI E+
Sbjct: 50 LWLGMP-AWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEMVSL 105
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain,
alternative splicing, cytoplasm, membrane,
metal-binding, phorbol-ester binding; 2.90A {Homo
sapiens}
Length = 81
Score = 83.2 bits (206), Expect = 1e-19
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 503 SQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRR 562
++ V LW TE+V W+ + EY + F + G LL L L+ D+G+ +R
Sbjct: 4 TRPVHLWGTEEVAAWLEHLSLCEYKDIFTRHDIRGSGLLHLERRDLK-DLGVTKVGHMKR 62
Query: 563 FERELQNLKK 572
++ L +
Sbjct: 63 ILCGIKELSR 72
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 567 LQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGI 626
++ + + + +++V +L +L Y + + L L + G+
Sbjct: 1 MEKTRPVHLWGTEEVAA---WLEHLS--LCEYKDIFTRHDIRGSGLLHLERRDLK-DLGV 54
Query: 627 HNSIHRLRIMEAIHEIEREWNKEYEDN 653
H RI+ I E+ R + +
Sbjct: 55 TKVGHMKRILCGIKELSRSSRHHHHHH 81
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding
protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2
PDB: 1pk1_A
Length = 89
Score = 82.6 bits (204), Expect = 2e-19
Identities = 21/86 (24%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
+ V + WS +DV ++R++ G +Y ++F++ +DG LL+L E+HL + +G+
Sbjct: 4 KRVNGTDRPPISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGM 63
Query: 555 HNGIQRRRFERELQNLKKMADYSSKD 580
G + +++++K++ D+
Sbjct: 64 KLG-PALKIVAKVESIKEVRDHHHHH 88
Score = 31.8 bits (72), Expect = 0.21
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIM 636
S DV+N F+ L Y + +D ++ L E+ L+ G+ L+I+
Sbjct: 18 SVDDVSN---FIRELPG-CQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLG-PALKIV 72
Query: 637 EAIHEIEREWNKEYEDN 653
+ I+ + + +
Sbjct: 73 AKVESIKEVRDHHHHHH 89
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density,
SAM domain, shank, scaffolding protein, structural
protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB:
2f44_A
Length = 76
Score = 80.9 bits (200), Expect = 7e-19
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
+ LWS DV +W+ I E+ + F + ++G L L +E ++G+ R ER
Sbjct: 2 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHRENIER 60
Query: 566 ELQNLKK 572
L+ L
Sbjct: 61 ALRQLDG 67
Score = 33.1 bits (76), Expect = 0.041
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 573 MADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHR 632
+ +S DV + +L ++ + + ++ + AL++E + E G+ HR
Sbjct: 2 LQLWSKFDVGD---WLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHR 55
Query: 633 LRIMEAIHE 641
I A+ +
Sbjct: 56 ENIERALRQ 64
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm,
membrane, sensory transduction, vision, signaling
protein; 1.90A {Drosophila melanogaster}
Length = 78
Score = 74.1 bits (182), Expect = 2e-16
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 506 VPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRF 563
V LW+ DV +W R+ + +Y F + + G LL++ + L+ +G+ + R
Sbjct: 3 VYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNRDREAI 61
Query: 564 ERELQNLKKMADYSS 578
RE+ + D
Sbjct: 62 WREIVKQRLKTDIME 76
Score = 35.2 bits (81), Expect = 0.010
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 571 KKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSI 630
K + ++ DV + E++ Y + ++ +++ L G+ ++
Sbjct: 1 KAVYLWTVSDVLK---WYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNR 56
Query: 631 HRLRIMEAIHE 641
R I I +
Sbjct: 57 DREAIWREIVK 67
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer,
SAM domain complex, cytoplasm, membrane; 2.00A
{Drosophila melanogaster}
Length = 106
Score = 73.5 bits (180), Expect = 7e-16
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 487 AAQTLRLIGETVPHKLSQQ--VPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQ 542
+T+ K ++ V LW+ DV +W R+ + +Y F + + G LL+
Sbjct: 2 GEETINSTQNKTRTKTTRPKAVYLWTVSDVLKWYRRHCGEYTQYEQLFAQHDITGRALLR 61
Query: 543 LNEEHLRDDIGIHNGIQRRRFERELQNLKKMADYSSKDVTNLNN 586
+ + L+ +G+ + R RE+ + D N
Sbjct: 62 ITDSSLQ-RMGVTDNRDREAIWREIVKQRLKTDIMEIRDMERLN 104
Score = 33.8 bits (77), Expect = 0.058
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 571 KKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSI 630
K + ++ DV + E++ Y + ++ +++ L G+ ++
Sbjct: 21 KAVYLWTVSDVLK---WYRRHCGEYTQYEQLFAQHDITGRALLRITDSSLQ-RMGVTDNR 76
Query: 631 HRLRIMEAIHEI-EREWNKEYEDNPDKNL 658
R I I + + E D N+
Sbjct: 77 DREAIWREIVKQRLKTDIMEIRDMERLNI 105
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 103
Score = 71.0 bits (174), Expect = 4e-15
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQIGFAE--YANNFVESRVDGDLLLQLNEEHLRDDIG 553
+ +L W E V ++R+ GF E N E+ + G LL L+E ++G
Sbjct: 17 WSPGLELHPDYKTWGPEQVCSFLRRGGFEEPVLLKNIRENEITGALLPCLDESRFE-NLG 75
Query: 554 IHNGIQRRRFERELQNLKKMADYSSK 579
+ + +R++ +Q L ++ + K
Sbjct: 76 VSSLGERKKLLSYIQRLVQIHVDTMK 101
Score = 31.4 bits (71), Expect = 0.38
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 573 MADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHR 632
+ + V + FL G E + ++ + + L E + G+ + R
Sbjct: 27 YKTWGPEQVCS---FLRRGGFEEPVLLKNIRENEITGALLPCLDESRFE-NLGVSSLGER 82
Query: 633 LRIMEAIHEI 642
+++ I +
Sbjct: 83 KKLLSYIQRL 92
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 2e-14
Identities = 77/455 (16%), Positives = 145/455 (31%), Gaps = 96/455 (21%)
Query: 461 DIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVREWVRQ 520
D+ K I + E + + +AV+ TLRL W+ +E
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVS-----GTLRLF--------------WTLLSKQE---- 76
Query: 521 IGFAEYANNFVESRVDGD---LLLQLNEEHLRDDIGIHNGI-QRRRFERELQNLKKMADY 576
E FVE + + L+ + E + + I QR R + Q K
Sbjct: 77 ----EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDS--IKALSEEQLIC--ECGIH-NSIH 631
+ L LL L ++ +L +G K + ++ C + I ++
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 632 RLRIMEAIHEIEREWNKEYEDNPDKNLDVFISYR-RSNGSQLASLLKVHLELRQFK---- 686
E + +E Y+ +P+ S + + + L+ L+ + ++
Sbjct: 191 NCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 687 VFIDV---ERLEAGKFDNN---LLQS-IKQARNFLLVLTPKALDRCMEDNESECKDWVHR 739
V ++V + A F+ + LL + KQ +FL T ++ +
Sbjct: 249 VLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHS---MTLTPD 301
Query: 740 EIVAALQSGCNIIPILDNFAWPDPEQLPADMRAI-----------CKFNGVRWIHDYQDA 788
E+ + +L + P+ LP ++ + W + ++
Sbjct: 302 EVKS----------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHV 350
Query: 789 CVDKLERFMRGELNS-----YRS---ALSV-KSDPPSTPNILNKV--NAPTYQRMHS-ND 836
DKL + LN YR LSV +L+ + + M N
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 837 SSKGS--NGDTMEYTFYSMLIRYLLILCPRRRKSS 869
K S E T I YL + + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSI-YLELKVKLENEYA 444
Score = 73.0 bits (178), Expect = 3e-13
Identities = 68/480 (14%), Positives = 135/480 (28%), Gaps = 147/480 (30%)
Query: 575 DYSSKDV--TNLNNFLLNLG-QEFSIYTYSMLNAGVDKDSIKALSEEQ-----LICECGI 626
Y KD+ + F+ N ++ S+L+ I +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 627 HNSIHRLRIMEAIHEIEREW-----NKEYEDNPDKNLDVFISYRRS--NGSQLASLLKVH 679
+ + + +E + I ++ E P ++I R N +Q+ K +
Sbjct: 75 QEEMVQ-KFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDRLYNDNQV--FAKYN 130
Query: 680 LELRQFKVFIDVERLEAGKFDN--NLLQSIKQARNFLL---------VLTPKALDRCMED 728
V RL+ + L ++ A+N L+ +
Sbjct: 131 -----------VSRLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL----S 173
Query: 729 NESECKD-----WVH-------REIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKF 776
+ +CK W++ ++ LQ I P+ I K
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-------PNWTSRSDHSSNI-KL 225
Query: 777 NGVRWIHDYQDACVDKLERFMRGELNSYRSALSVKSDPPSTPNILNK------------- 823
IH Q +L R ++ + Y + L V + N
Sbjct: 226 R----IHSIQA----ELRRLLKSK--PYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRF 274
Query: 824 ------VNAPTYQRMHSNDSSKG-SNGDTMEYTFYSMLIRYLLILC---PRRRKSSSP-- 871
++A T + + S + + +L++YL PR +++P
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLLKYLDCRPQDLPREVLTTNPRR 329
Query: 872 ----SPYLPSHTS----WRPPTSPKSQQLRRKGPGNMPVRAHSLEGLIEPAPPRNSTLES 923
+ + + W+ K + SL L EPA R
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIES----------SLNVL-EPAEYR------ 372
Query: 924 GQVNKSVSLENELDTISDVTQTSDT------DSTRSKTKNFMDKCVNKMKSLINKKPASH 977
++ +S+ + D +S ++K SL+ K+P
Sbjct: 373 -KMFDRLSVFPP-----SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKES 424
Score = 71.4 bits (174), Expect = 1e-12
Identities = 90/671 (13%), Positives = 186/671 (27%), Gaps = 236/671 (35%)
Query: 57 MTKSLMTSASQMSHMVNGTT--TSTKMITSSASSSGISAAQ--IDEILNLDFDDL-EKLS 111
M KS+++ ++ H++ + T + + S Q ++E+L +++ L +
Sbjct: 41 MPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 112 KNSLVSQQNIDAIIAKYTGCLENIVQDSVKLFAIKVFSMKEVFILRSFILYLQVMQN--- 168
Y + + D+ V ++ LR +L L+ +N
Sbjct: 100 TEQRQPSMMTR----MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 169 -----------------------------F--SSDQEKRAPAVLDKVNDL---MQKAW-- 192
F + VL+ + L + W
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 193 ------AVPTHGHEIGYSLCNTLR-----NCGGMDLLISNCVEKDLDLQFSSARLLE--- 238
+ H I L L+ NC LL+ L +A+
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLV-------LL-NVQNAKAWNAFN 263
Query: 239 -QC---LTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSD 294
C LTT R V + L T +I S++H + E
Sbjct: 264 LSCKILLTT--RFKQVTDFLSAAT------TTHI-SLDHHSMT-------LTPDEV---- 303
Query: 295 VIGLGGLDTVLFECRKNDIETLRH--CAGALANLSLYG----------------GAENQE 336
++L + + L LS+ +
Sbjct: 304 -------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 337 AMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDL 396
+I+ + V L P + K + L++ + I +L +++ +
Sbjct: 357 TIIESSLNV-LEP-----AEYRKMFDRLSV--FPPSAHIPTILL------SLIWFDVIKS 402
Query: 397 VEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLS---SKREEARNLAAFH------- 446
V+ ++ K +L + + + + S + + N A H
Sbjct: 403 DVMVVV----NKLHKYSLV-----EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 447 -----FCMEAGIKKQQGKTD--IFKEIG----AIEPLKKVASCPNAVASKYAAQTLRLIG 495
F + I D + IG IE +++ + L
Sbjct: 454 NIPKTFDSDDLIPPYL---DQYFYSHIGHHLKNIEHPERMTLFRM----------VFL-- 498
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQ-IGFAEYANNFVESRVDGDLLLQLN--EEHLRDDI 552
D R ++ Q I A N S + + L QL + ++ D+
Sbjct: 499 -----------------DFR-FLEQKIRHDSTAWNASGSIL--NTLQQLKFYKPYICDND 538
Query: 553 GIHNGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSML--------N 604
++ER + + +FL + + Y+ L +
Sbjct: 539 P--------KYERLVNAIL--------------DFLPKIEENLICSKYTDLLRIALMAED 576
Query: 605 AGVDKDSIKAL 615
+ +++ K +
Sbjct: 577 EAIFEEAHKQV 587
Score = 70.7 bits (172), Expect = 2e-12
Identities = 97/707 (13%), Positives = 203/707 (28%), Gaps = 200/707 (28%)
Query: 101 NLDFDDLEKLSKNSLVSQQNIDAIIAKYTGCLENIVQDSVKLFAIKVFSMKEV-FILRSF 159
++DF+ E + + DA + + C + VQD K + S +E+ I+ S
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFD-CKD--VQDMPK----SILSKEEIDHIIMSK 58
Query: 160 ILYLQVMQNFSSDQEKRAPAVLDKVNDLMQK--AWAVPTHGHEIGYSLCNTLRNCGGMDL 217
++ F + K+ V V ++++ + L + ++
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------------LMSPIKT------ 100
Query: 218 LISNCVEKDLDLQ-FSSARLLEQCLTTENRDHVVENGLDK--VVRVACVCTKNINSVEHS 274
+ + + + R +R + K V R+ K ++
Sbjct: 101 ---EQRQPSMMTRMYIEQR---------DRLYNDNQVFAKYNVSRLQPY-LKLRQALLEL 147
Query: 275 RVGTGILEHLFKHSEGTCSDVIGLGGL-DTVLFE--CRKNDIE----------TLRHCAG 321
R +L G+ G T + C ++ L++C
Sbjct: 148 RPAKNVLID-------------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 322 ALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKY---YACLAIAVLVANTEIEAA 378
L E + ++ + P W + NIK + L+ + E
Sbjct: 195 PETVL------EMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 379 --VLKSVQEAAVLK--------------SGTLDLVEPFVMSHSPSEFAKSNLAHAHGQN- 421
VL +VQ A D + +H + L ++
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 422 -RNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKT-DIFKEIGAIEPLKKVASC- 478
+L L E + A + T D +K + + + S
Sbjct: 307 LLKYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 479 ----PNAVASKYAAQTLRLIGETVPHKLSQQV--PLWSTEDVREWVRQIGFAEYANNFVE 532
P + L + + + + +W + V + N +
Sbjct: 364 NVLEPAEYRKMF--DRLSVFPPSA--HIPTILLSLIWFDVIKSD-VMVV-----VNKLHK 413
Query: 533 SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERE-LQNL-KKMAD-YSSKDVTNLNNFLL 589
L+ + +E I I + + + E L + + D Y+ + ++ +
Sbjct: 414 YS----LVEKQPKEST---ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 590 NLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKE 649
Y YS + G H L+ +E + +
Sbjct: 467 P--YLDQ-YFYSHI---------------------GHH-----LKNIEHPERMT-LFRMV 496
Query: 650 YEDNPDKNLDV-FISYR-RSNGSQL---ASLLKVHLELRQFKVFIDVERLEAGKFDNN-- 702
+ LD F+ + R + + S+L +L+ +K +I DN+
Sbjct: 497 F-------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---------CDNDPK 540
Query: 703 ---LLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ 746
L+ +I +FL + + S+ D + AL
Sbjct: 541 YERLVNAIL---DFLPKIEENLI-------CSKYTDLLRI----ALM 573
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha
motif, SAM domain, SAM domain dimer, SAM domain complex,
cytoplasm, membrane; 2.00A {Homo sapiens}
Length = 80
Score = 68.2 bits (167), Expect = 2e-14
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 504 QQVPLWSTEDVREWVRQIGF--AEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRR 561
+ V WS V +W++ + +Y NF ++ GD LL++ + L D+G+ +
Sbjct: 2 EPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQE 60
Query: 562 RFERELQNLKKM 573
+ L +
Sbjct: 61 LILEAVDLLCAL 72
Score = 37.8 bits (88), Expect = 0.001
Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 570 LKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNS 629
++ ++ +S V + ++ L Y + + D + ++ ++L + G+
Sbjct: 1 MEPVSKWSPSQVVD---WMKGLDDCLQQYIKNFEREKISGDQLLRITHQEL-EDLGVSRI 56
Query: 630 IHRLRIMEAIHEI 642
H+ I+EA+ +
Sbjct: 57 GHQELILEAVDLL 69
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 67.5 bits (165), Expect = 4e-14
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 503 SQQVPLWSTEDVREWVRQIGFA--EYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQR 560
S V WS V +W++ + +Y NF ++ GD LL++ + L D+G+ +
Sbjct: 5 SSGVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIGHQ 63
Query: 561 RRFERELQNLKKMADYSS 578
+ L + S
Sbjct: 64 ELILEAVDLLCALNSGPS 81
Score = 38.6 bits (90), Expect = 7e-04
Identities = 11/72 (15%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Query: 571 KKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSI 630
++ +S V + ++ L Y + + D + ++ ++L + G+
Sbjct: 6 SGVSKWSPSQVVD---WMKGLDDCLQQYIKNFEREKISGDQLLRITHQELE-DLGVSRIG 61
Query: 631 HRLRIMEAIHEI 642
H+ I+EA+ +
Sbjct: 62 HQELILEAVDLL 73
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 74.2 bits (182), Expect = 6e-14
Identities = 56/304 (18%), Positives = 106/304 (34%), Gaps = 30/304 (9%)
Query: 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVENG-LDKVVRVAC 262
+ G + + I + D+Q + L T RD+V++ L ++++
Sbjct: 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF- 158
Query: 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGA 322
N + +R L +L + L+ + + +D + L A
Sbjct: 159 ---SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWA 215
Query: 323 LANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKS 382
L+ LS G + +A+I V L L HND + A A+ +V +I
Sbjct: 216 LSYLS-DGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDI------- 267
Query: 383 VQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAHAHGQ-------NRNWLQKLVP 430
Q +L L + + S S + SN+ A + + N L+
Sbjct: 268 -QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT-AGNRAQIQTVIDANIFPALIS 325
Query: 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490
+L + R AA+ + + E+G I+PL + + ++ + A
Sbjct: 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYL-VELGCIKPLCDLLTVMDSKIVQVALNG 384
Query: 491 LRLI 494
L I
Sbjct: 385 LENI 388
Score = 43.0 bits (101), Expect = 4e-04
Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 30/304 (9%)
Query: 207 NTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTEN----RDHVVENGLDKVVRVAC 262
+I K + Q S+ + + L+ E + + G VV
Sbjct: 14 EMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG---VVARFV 70
Query: 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGA 322
K + +L ++ + VI G + + + A
Sbjct: 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130
Query: 323 LANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDD-NIKYYACLAIAVLVANTEIEAAVLK 381
L N++ ++ ++ + L L + + A A++ L K
Sbjct: 131 LGNIAGD-STMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL--------CRGK 181
Query: 382 SVQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAHAHGQNR------NWLQKLVP 430
S S L+++ + +A S L+ ++LV
Sbjct: 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE 241
Query: 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490
+L + + A + + +T + A++ L + S P K A T
Sbjct: 242 LLMHNDYKVVSPAL--RAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT 299
Query: 491 LRLI 494
+ I
Sbjct: 300 ISNI 303
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 84
Score = 65.4 bits (159), Expect = 2e-13
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 495 GETVPHKLSQQVPLWSTEDVREWVRQIGFAE-YANNFVESRVDGDLLLQLNEEHLRDDIG 553
G + P + + S E+V + +R IG +E + FV ++DG+LL+QL EE L +D
Sbjct: 4 GSSGPWQPPADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSEDFK 63
Query: 554 IHNGIQRRRFERELQ 568
+ + +Q ++ + +
Sbjct: 64 L-SKLQVKKIMQFIN 77
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers,
transcriptional repression, transcription repression;
1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB:
1pk3_A
Length = 89
Score = 62.6 bits (152), Expect = 3e-12
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 497 TVPHKLSQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGI 554
L Q W+ E+V +++ A + + F + +DG LL+LN E + +G+
Sbjct: 5 RANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSERMMKYMGL 64
Query: 555 HNGIQRRRFERELQNLKKMADYS 577
G + + + +
Sbjct: 65 KLG-PALKICNLVNKVNGRDHHH 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 66.0 bits (161), Expect = 1e-11
Identities = 49/330 (14%), Positives = 103/330 (31%), Gaps = 58/330 (17%)
Query: 206 CNTLR-----NCGGMDLLISNCVEKDLDLQFSSARLLEQC-LTTENRDHVVENG----LD 255
C T + GMD + + +L + E+R + E G +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIA 79
Query: 256 KVVRVACVCTKNINSVEHSRV---GTGILEHLFKHSEGTCSDVIGL-GGLDTVLFECRKN 311
++++V C N + L +L + + + G + ++ + +
Sbjct: 80 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 139
Query: 312 DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH-NDDNIKYYACLAIAVLV 370
+ + A L NLS +++ + + L A ++ A+ L
Sbjct: 140 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199
Query: 371 ANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAK------------SNLAHAH 418
A+ + G L + + S + S+L +
Sbjct: 200 AHCT-------ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252
Query: 419 GQNR------NWLQKLVPVLSSK----REEA----RNLAAFHFCMEAGIKKQQGKTDIFK 464
+R N LQ L+ L S A NL+A + + + ++
Sbjct: 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN---------PKDQEALWD 303
Query: 465 EIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
GA+ LK + + + + +A LR +
Sbjct: 304 M-GAVSMLKNLIHSKHKMIAMGSAAALRNL 332
Score = 29.0 bits (65), Expect = 7.6
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 9/129 (6%)
Query: 216 DLLISNCVEKDLDLQFSSARLLEQCLTT-----ENRDHVVENGLDKVVRVACVCTKNINS 270
L L + S +L + ++R + EN + + + + + ++
Sbjct: 221 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL-LQHLKSHSLTI 279
Query: 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYG 330
V ++ G L +L + + +G + + A AL NL
Sbjct: 280 VSNA---CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336
Query: 331 GAENQEAMI 339
A+ ++A I
Sbjct: 337 PAKYKDANI 345
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 66.5 bits (162), Expect = 3e-11
Identities = 41/316 (12%), Positives = 94/316 (29%), Gaps = 38/316 (12%)
Query: 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQC--LTTENRDHVVENG-LDKVVRVACVCTK 266
R GG+ +++ + ++ + L+ E++ ++ +G +V + T
Sbjct: 137 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN--IMRTY 194
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ + +L+ L S ++ GG+ + +++C L NL
Sbjct: 195 TYEKLL--WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEA 386
S + + L L +D N+ A ++ L N +
Sbjct: 252 S----DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--------KNKM 299
Query: 387 AVLKSGTLDLVEPFVMSHSPSEFAK-------SNLAHAHGQNRNW---------LQKLVP 430
V + G ++ + V+ E +L H + L +V
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490
+L A + +E GAI L ++ + + +
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLVQLLVRAHQDTQRRTSMG 417
Query: 491 LRLIGETVPHKLSQQV 506
++ + V
Sbjct: 418 GTQQQFVEGVRMEEIV 433
Score = 54.9 bits (132), Expect = 1e-07
Identities = 50/302 (16%), Positives = 106/302 (35%), Gaps = 35/302 (11%)
Query: 209 LRNCGGMDLLISN-CVEKDLDLQFSSARLLEQ-CLTTENRDHVVENGLDKVVR--VACVC 264
+R+ + ++ D++ +A L E + ++G + V +
Sbjct: 52 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG---GIPALVKMLG 108
Query: 265 TKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALA 324
+ + + ++ L +L H EG V GGL ++ K +++ L L
Sbjct: 109 SPVDSVLFYA---ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165
Query: 325 NLSLYGGAENQEAMIKRKVPVWLFPLAF-HNDDNIKYYACLAIAVLVANTEIEAAVLKS- 382
L+ YG E++ ++ P L + + + + + + VL + + A++++
Sbjct: 166 ILA-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 224
Query: 383 -VQE-AAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNW---LQKLVPVLSSKRE 437
+Q L + LV+ + NL+ A + L LV +L S
Sbjct: 225 GMQALGLHLTDPSQRLVQ-------NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDI 277
Query: 438 EARNLAAF---HFCMEAGIKKQQGKTDIFKEIGAIEPLKKV--ASCPNAVASKYAAQTLR 492
AA + K ++G IE L + + ++ A LR
Sbjct: 278 NVVTCAAGILSNLTCNNYKNKMM-----VCQVGGIEALVRTVLRAGDREDITEPAICALR 332
Query: 493 LI 494
+
Sbjct: 333 HL 334
Score = 51.1 bits (122), Expect = 1e-06
Identities = 57/315 (18%), Positives = 100/315 (31%), Gaps = 38/315 (12%)
Query: 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNI 268
+ GGM L + + L + L L+ GL + V + + +I
Sbjct: 220 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRN-LSDAATKQEGMEGLLGTL-VQLLGSDDI 277
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKND--IETLRHCAGALANL 326
N V + GIL +L ++ V +GG++ ++ + + AL +L
Sbjct: 278 NVVTCA---AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334
Query: 327 SLYGGA--ENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA-NTEIEAAV---- 379
+ Q A+ + L A + + +A A +
Sbjct: 335 TSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG 394
Query: 380 --------LKSVQEAAVLKSGTLDLVEPFVMSHSPSEF------AKSNLAHAHGQNR--- 422
L + ++ + FV E A LA NR
Sbjct: 395 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVI 453
Query: 423 ---NWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCP 479
N + V +L S E + +AA C A K+ + + GA PL ++
Sbjct: 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA---EAIEAEGATAPLTELLHSR 510
Query: 480 NAVASKYAAQTLRLI 494
N + YAA L +
Sbjct: 511 NEGVATYAAAVLFRM 525
Score = 39.1 bits (91), Expect = 0.008
Identities = 28/213 (13%), Positives = 54/213 (25%), Gaps = 38/213 (17%)
Query: 295 VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRK--VPVWLFPLAF 352
+ + + D + A + LS ++ A+++ V + +
Sbjct: 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQN 67
Query: 353 HNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFV-MSHSPSEFAK 411
ND + L + E A+ KS + V M SP +
Sbjct: 68 TNDVETARCTAGTLHNLSHHREGLLAIFKS------------GGIPALVKMLGSPVDSVL 115
Query: 412 -------SNLAHAHGQNRNW------LQKLVPVLSSKREEARNLAA---FHFCMEAGIKK 455
NL + LQK+V +L+ + +
Sbjct: 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG----- 170
Query: 456 QQGKTDIFKEIGAIEPLKKVASCPNAVASKYAA 488
Q I G + L + +
Sbjct: 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTT 203
Score = 34.1 bits (78), Expect = 0.22
Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 25/187 (13%)
Query: 205 LCNTLRNC----------GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVE-NG 253
L L GG V + ++ + L NR + N
Sbjct: 399 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT 458
Query: 254 LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFEC-RKND 312
+ V+ + + N + G+L L + E + G L E +
Sbjct: 459 IPLFVQ--LLYSPIENIQRVA---AGVLCELAQDKEA-AEAIEAEGATA-PLTELLHSRN 511
Query: 313 IETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFP-LAFHNDDNIKYYACLAIAVLVA 371
+ A L +S E++ K+++ V L L A L + +
Sbjct: 512 EGVATYAAAVLFRMS-----EDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQ 566
Query: 372 NTEIEAA 378
+
Sbjct: 567 GEPLGYR 573
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 65.8 bits (160), Expect = 4e-11
Identities = 55/303 (18%), Positives = 103/303 (33%), Gaps = 24/303 (7%)
Query: 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVAC 262
+ + G + IS + + L + RD V+++G +D ++ +
Sbjct: 136 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195
Query: 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGA 322
V + + + R T L +L ++ L T++ ND E L A
Sbjct: 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 255
Query: 323 LANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKS 382
++ L+ G E E ++K+ V L L + I A AI +V T+
Sbjct: 256 ISYLTD-GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-------- 306
Query: 383 VQEAAVLKSGTLDLVEPFVMSHSPSE-----FAKSNLAHAHGQNR------NWLQKLVPV 431
Q V+ +G L + + + + + SN+ + LV V
Sbjct: 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV 366
Query: 432 LSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTL 491
LS + + AA+ + + G IEPL + S + + +
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAI 425
Query: 492 RLI 494
I
Sbjct: 426 SNI 428
Score = 42.3 bits (99), Expect = 8e-04
Identities = 40/301 (13%), Positives = 87/301 (28%), Gaps = 33/301 (10%)
Query: 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVE----NGLDKVVRVACVCTKNI 268
++ ++ +L+ Q + + + L+ E + + + K V T
Sbjct: 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS-FLGKTDCS 115
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328
S L ++ + V+ G + + AL N++
Sbjct: 116 PIQFES---AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA- 171
Query: 329 YGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV----ANTEIEAAVLKSVQ 384
G+ ++ +IK L L D + L + A L +V+
Sbjct: 172 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVE 231
Query: 385 EA-----AVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNR------NWLQKLVPVLS 433
+ +L +++ A S L + + +LV +L
Sbjct: 232 QILPTLVRLLHHNDPEVLADSCW-------AISYLTDGPNERIEMVVKKGVVPQLVKLLG 284
Query: 434 SKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRL 493
+ A + + +T + GA+ + + P K A T+
Sbjct: 285 ATELPIVTPAL--RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342
Query: 494 I 494
I
Sbjct: 343 I 343
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 65.4 bits (159), Expect = 6e-11
Identities = 50/298 (16%), Positives = 106/298 (35%), Gaps = 31/298 (10%)
Query: 209 LRNCGGMDLLISN-CVEKDLDLQFSSARLLEQ-CLTTENRDHVVENGLDKVVRVACVCTK 266
+R+ + ++ D++ ++ L E + ++G + V + +
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPAL-VNMLGSP 246
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ + H+ L +L H EG V GGL ++ K +++ L L L
Sbjct: 247 VDSVLFHA---ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAF-HNDDNIKYYACLAIAVLVANTEIEAAVLKS--V 383
+ YG E++ ++ P L + + + + + + VL + + A++++ +
Sbjct: 304 A-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362
Query: 384 QE-AAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHA---HGQNRNWLQKLVPVLSSKREEA 439
Q L + LV+ + + NL+ A L LV +L S
Sbjct: 363 QALGLHLTDPSQRLVQNCL-------WTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINV 415
Query: 440 RNLAA---FHFCMEAGIKKQQGKTDIFKEIGAIEPLKKV--ASCPNAVASKYAAQTLR 492
AA + K + ++G IE L + + ++ A LR
Sbjct: 416 VTCAAGILSNLTCNNYKNKM-----MVCQVGGIEALVRTVLRAGDREDITEPAICALR 468
Score = 63.9 bits (155), Expect = 2e-10
Identities = 42/316 (13%), Positives = 97/316 (30%), Gaps = 38/316 (12%)
Query: 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTT--ENRDHVVENG-LDKVVRVACVCTK 266
R GG+ +++ + ++ + L+ E++ ++ +G +V + T
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN--IMRTY 330
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ + +L+ L S ++ GG+ + +++C L NL
Sbjct: 331 TYEKLL--WTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEA 386
S A ++ ++ + L L +D N+ A ++ L N +
Sbjct: 388 S---DAATKQEGMEGLLGT-LVQLLGSDDINVVTCAAGILSNLTCNNY--------KNKM 435
Query: 387 AVLKSGTLDLVEPFVMSHSPSEFAK-------SNLAHAHGQNRNW---------LQKLVP 430
V + G ++ + V+ E +L H L +V
Sbjct: 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495
Query: 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490
+L A + +E GAI L ++ + + +
Sbjct: 496 LLHPPSHWPLIKATVGLIRNLALCPANHAP--LREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 491 LRLIGETVPHKLSQQV 506
++ + V
Sbjct: 554 GTQQQFVEGVRMEEIV 569
Score = 52.7 bits (126), Expect = 5e-07
Identities = 47/300 (15%), Positives = 89/300 (29%), Gaps = 37/300 (12%)
Query: 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVE-NGLDKVVRVAC 262
G + L+ D+++ +A +L +N+ V + G++ +VR
Sbjct: 392 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 451
Query: 263 VCTKNINSVEHSRVGTGILEHL---FKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHC 319
+ E + L HL + +E + V GL V+ L
Sbjct: 452 RAGDREDITEPA---ICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508
Query: 320 AGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAV 379
L L N + ++ L L + + + +
Sbjct: 509 TVGLIRN-LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR--- 564
Query: 380 LKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEA 439
++ + EA G L A+ + N + V +L S E
Sbjct: 565 MEEIVEACT---GAL------------HILARDIHNRIVIRGLNTIPLFVQLLYSPIENI 609
Query: 440 RNLAA---FHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGE 496
+ +AA + + + GA PL ++ N + YAA L + E
Sbjct: 610 QRVAAGVLCELAQDKEAA------EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663
Score = 50.8 bits (121), Expect = 2e-06
Identities = 38/201 (18%), Positives = 73/201 (36%), Gaps = 35/201 (17%)
Query: 311 NDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLV 370
ND+ET R +G L NLS E A+ K L + D++ ++A + L+
Sbjct: 205 NDVETARCTSGTLHNLS--HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 371 ANTEIEAAVLKSVQEAAVLKSGTLD-LVEPFVMSHSPSEFAK------SNLAHAHGQNRN 423
+ E + AV +G L +V +++ + +F LA+ + +++
Sbjct: 263 LHQE--------GAKMAVRLAGGLQKMVA--LLNKTNVKFLAITTDCLQILAYGNQESKL 312
Query: 424 W------LQKLVPVLSSKREEARNLAA----FHFCMEAGIKKQQGKTDIFKEIGAIEPLK 473
Q LV ++ + E + + K E G ++ L
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP------AIVEAGGMQALG 366
Query: 474 KVASCPNAVASKYAAQTLRLI 494
+ P+ + TLR +
Sbjct: 367 LHLTDPSQRLVQNCLWTLRNL 387
Score = 39.6 bits (92), Expect = 0.006
Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 29/237 (12%)
Query: 270 SVEHSRVGTGILEHLFKHSEGTCSDVI-GLGGLDTVLFECRKNDIETLRHCAGALANLSL 328
+V+ + +L+H + D + + D + A + LS
Sbjct: 120 NVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS- 178
Query: 329 YGGAENQEAMIKRK--VPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKS--VQ 384
++ A+++ V + + ND + L + E A+ KS +
Sbjct: 179 -KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIP 237
Query: 385 E-AAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNW------LQKLVPVLSSKRE 437
+L S ++ + NL + LQK+V +L+
Sbjct: 238 ALVNMLGSPVDSVLFHAIT-------TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 290
Query: 438 EARNLAA---FHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTL 491
+ + Q I G + L + + +
Sbjct: 291 KFLAITTDCLQILAYG-----NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 342
Score = 34.6 bits (79), Expect = 0.17
Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 37/176 (21%)
Query: 209 LRNCGGMDLLISNCVEKDLDLQ---------------FSSARLLEQCLTT--------EN 245
LR G + L+ V D Q ++E C N
Sbjct: 526 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHN 585
Query: 246 RDHVVE-NGLDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTV 304
R + N + V+ + + N + G+L L + E + G
Sbjct: 586 RIVIRGLNTIPLFVQ--LLYSPIENIQRVA---AGVLCELAQDKEA-AEAIEAEGATA-P 638
Query: 305 LFEC-RKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIK 359
L E + + A L +S E++ K+++ V L F +
Sbjct: 639 LTELLHSRNEGVATYAAAVLFRMS-----EDKPQDYKKRLSVELTSSLFRTEPMTW 689
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling,
angiogenesis, apopt ATP-binding, cataract; NMR {Homo
sapiens}
Length = 82
Score = 58.3 bits (141), Expect = 7e-11
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 499 PHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNG 557
H S VP S V EW+ I +Y +F+ + + ++Q+ + ++ IG+
Sbjct: 4 HHHSSGLVPRGSHMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLP 62
Query: 558 IQRRRFERELQNLK 571
++R L LK
Sbjct: 63 GHQKRIAYSLLGLK 76
Score = 34.8 bits (80), Expect = 0.016
Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 568 QNLKKMADYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICEC 624
+ ++ +L + + Q YT + AG + + ++ + +
Sbjct: 3 HHHHSSGLVPRGSHMTVSEWLESIKMQQ----YTEHFMAAGYTAIEKVVQMTNDDIK-RI 57
Query: 625 GIHNSIHRLRIMEAIHEI 642
G+ H+ RI ++ +
Sbjct: 58 GVRLPGHQKRIAYSLLGL 75
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 63.6 bits (155), Expect = 2e-10
Identities = 40/316 (12%), Positives = 94/316 (29%), Gaps = 38/316 (12%)
Query: 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQC--LTTENRDHVVENG-LDKVVRVACVCTK 266
R GG+ +++ + ++ + L+ E++ ++ +G +V + +
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM----R 195
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ + +L+ L S ++ GG+ + +++C L NL
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEA 386
S + + L L +D N+ A ++ L N +
Sbjct: 255 S----DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY--------KNKM 302
Query: 387 AVLKSGTLDLVEPFVMSHSPSEFAK-------SNLAHAHGQNRNW---------LQKLVP 430
V + G ++ + V+ E +L H + L +V
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362
Query: 431 VLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQT 490
+L A + +E GAI L ++ + + +
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHA--PLREQGAIPRLVQLLVRAHQDTQRRTSMG 420
Query: 491 LRLIGETVPHKLSQQV 506
++ + V
Sbjct: 421 GTQQQFVEGVRMEEIV 436
Score = 60.9 bits (148), Expect = 1e-09
Identities = 47/301 (15%), Positives = 104/301 (34%), Gaps = 33/301 (10%)
Query: 209 LRNCGGMDLLISNCV-EKDLDLQFSSARLLEQ-CLTTENRDHVVE-NGLDKVVRVACVCT 265
+R+ + ++ D++ +A L E + + G+ +V+ + +
Sbjct: 55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVK--MLGS 112
Query: 266 KNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALAN 325
+ + ++ L +L H EG V GGL ++ K +++ L L
Sbjct: 113 PVDSVLFYA---ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169
Query: 326 LSLYGGAENQEAMIKRK-VPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQ 384
L+ YG E++ ++ + + + + + + + VL + + A+ V+
Sbjct: 170 LA-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI---VE 225
Query: 385 EAAV------LKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQ---NRNWLQKLVPVLSSK 435
+ L + LV+ + NL+ A + L LV +L S
Sbjct: 226 AGGMQALGLHLTDPSQRLVQ-------NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD 278
Query: 436 REEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKV--ASCPNAVASKYAAQTLRL 493
AA + + ++G IE L + + ++ A LR
Sbjct: 279 DINVVTCAA--GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336
Query: 494 I 494
+
Sbjct: 337 L 337
Score = 51.3 bits (123), Expect = 1e-06
Identities = 42/297 (14%), Positives = 86/297 (28%), Gaps = 37/297 (12%)
Query: 207 NTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLT--TENRDHVVE-NGLDKVVRVACV 263
G + L+ D+++ +A +L +N+ V + G++ +VR
Sbjct: 260 KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319
Query: 264 CTKNINSVEHSRVGTGILEHL---FKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCA 320
+ E + L HL + +E + V GL V+ L
Sbjct: 320 AGDREDITEPA---ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 321 GALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVL 380
L L N + ++ L L + + + + +
Sbjct: 377 VGLIRN-LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR---M 432
Query: 381 KSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEAR 440
+ + E L + + + + + V +L S E +
Sbjct: 433 EEIVEGCTGALHIL----------ARDVHNRIVIRGLNT-----IPLFVQLLYSPIENIQ 477
Query: 441 NLAA---FHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+AA + + + GA PL ++ N + YAA L +
Sbjct: 478 RVAAGVLCELAQDKEAA------EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 40.5 bits (95), Expect = 0.002
Identities = 28/213 (13%), Positives = 54/213 (25%), Gaps = 38/213 (17%)
Query: 295 VIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRK--VPVWLFPLAF 352
+ + + D + A + LS ++ A+++ V + +
Sbjct: 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 353 HNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFV-MSHSPSEFAK 411
ND + L + E A+ KS + V M SP +
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGLLAIFKS------------GGIPALVKMLGSPVDSVL 118
Query: 412 -------SNLAHAHGQNR------NWLQKLVPVLSSKREEARNLAA---FHFCMEAGIKK 455
NL + LQK+V +L+ + + K
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 178
Query: 456 QQGKTDIFKEIGAIEPLKKVASCPNAVASKYAA 488
I G + L + +
Sbjct: 179 -----LIILASGGPQALVNIMRTYTYEKLLWTT 206
Score = 29.4 bits (66), Expect = 6.8
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 213 GGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVE-NGLDKVVRVACVCTKNINSV 271
GG V + ++ + L NR + N + V+ + + N
Sbjct: 420 GGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ--LLYSPIENIQ 477
Query: 272 EHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFEC-RKNDIETLRHCAGALANLS 327
+ G+L L + E + G L E + + A L +S
Sbjct: 478 RVA---AGVLCELAQDKEA-AEAIEAEGATA-PLTELLHSRNEGVATYAAAVLFRMS 529
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural
genomics, protein regulation, transcription; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 56.4 bits (136), Expect = 4e-10
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
V W+ V W+R + + F + ++ G LLQL + L + + + +
Sbjct: 11 VETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSLE-ALAVRSLGHQELILG 69
Query: 566 ELQNLK 571
++ L+
Sbjct: 70 GVEQLQ 75
Score = 31.4 bits (71), Expect = 0.30
Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 574 ADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRL 633
++ V +L L S+ Y + + ++ L + L + + H+
Sbjct: 12 ETWTPGKVAT---WLRGLD--DSLQDYPFEDWQLPGKNLLQLCPQSL-EALAVRSLGHQE 65
Query: 634 RIMEAIHEI 642
I+ + ++
Sbjct: 66 LILGGVEQL 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 4e-10
Identities = 91/523 (17%), Positives = 158/523 (30%), Gaps = 191/523 (36%)
Query: 301 LDTVL--FEC---RKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHND 355
L+ L FE NDI H ALA L EN ++K K
Sbjct: 84 LNLCLTEFENCYLEGNDI----H---ALA-AKLLQ--ENDTTLVKTK------------- 120
Query: 356 DNIK-YYACLAIAVLVANTEIEAAVLKSVQE-AAVLKS-----GTLD------------- 395
+ IK Y +A + + +A+ ++V E A L + G D
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 396 --LVEPFVMSHSP--SEFAKSNLA----HAHGQN-RNWLQK-----------LVPV---L 432
LV + + SE ++ L G N WL+ +P+ L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 433 SSKREEARNLAAF-HFCMEAGIKKQQGKT--DIFKEI-GAIEPLKKVASCPNAVA----- 483
+ H+ + A K G T ++ + GA + + + AVA
Sbjct: 241 IG-------VIQLAHYVVTA---KLLGFTPGELRSYLKGATGHSQGLVT---AVAIAETD 287
Query: 484 ---SKY--AAQTLRL---IG----ETVPHKLSQQVPLWSTEDVREW-------VRQIGFA 524
S + + + + IG E P+ L + + E + +
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 525 EYANNFVESRVDGDLLLQLNEEHLRDD----IGIHNGIQRRRF------------ERELQ 568
+ V+ V+ + N HL I + NG + L+
Sbjct: 348 Q-----VQDYVN-----KTN-SHLPAGKQVEISLVNG--AKNLVVSGPPQSLYGLNLTLR 394
Query: 569 NLKKMAD-------YSSKDVTNLNNFLLNLGQEF-SIY---TYSMLNAGVDKDSIKALSE 617
K + +S + + N F L + F S ++N + K+++ + +
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRF-LPVASPFHSHLLVPASDLINKDLVKNNV-SFNA 452
Query: 618 EQLIC-----ECGIHNSIHRLRIMEA------IHEIERE---WNKEYEDNPDKNLDVFIS 663
+ + G LR++ + I R W + LD F
Sbjct: 453 KDIQIPVYDTFDG-----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILD-F-- 504
Query: 664 YRRSNG----SQLASLLKVHLELRQFKVFIDVERLEAGKFDNN 702
G S L L + + +V + AG D N
Sbjct: 505 -----GPGGASGLGVLTHRNKDGTGVRV------IVAGTLDIN 536
Score = 61.2 bits (148), Expect = 2e-09
Identities = 105/636 (16%), Positives = 192/636 (30%), Gaps = 200/636 (31%)
Query: 399 PFVMSHSPSEFA----KSNLAHAHGQNRNWLQKLVPV----------LSSKREEARNLAA 444
P +SH E ++ A Q + K++P ++ E L
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAE----LVG 62
Query: 445 -F-HFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKL 502
F + + K F ++ L + Y L G + H L
Sbjct: 63 KFLGYVSS---LVEPSKVGQFDQV-----LNLCL---TEFENCY------LEGNDI-HAL 104
Query: 503 SQQVPLWSTEDV---REWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHN--- 556
+ ++ + + +E ++ A + L + E + +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE---GNAQLVAIFG 161
Query: 557 --GIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKA 614
G FE EL++L Y TY +L + K S +
Sbjct: 162 GQGNTDDYFE-ELRDL-----YQ---------------------TYHVLVGDLIKFSAET 194
Query: 615 LSEEQLICECGIHNSIHRLRIMEAIHEIEREWNKEYEDNPDKNLDVFISYRRS---NG-S 670
LSE + + + + + EW + + PDK D +S S G
Sbjct: 195 LSE---LIRTTLDAEKVFTQGLNIL-----EWLENPSNTPDK--DYLLSIPISCPLIGVI 244
Query: 671 QLASLLKVHLELRQFKVFIDVERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNE 730
QLA + V + G+ + L + ++ ++T A+
Sbjct: 245 QLA----------HYVVTAKLLGFTPGELRSYLKGATGHSQG---LVTAVAI-------- 283
Query: 731 SECKDWVHREIVAALQSGCNIIPILDNF--------AWPDPEQLPADMRAICKFNGVRWI 782
+E W E + S I +L F A+P+ LP + N
Sbjct: 284 AETDSW---E--SFFVSVRKAITVL--FFIGVRCYEAYPNTS-LPPSILEDSLENN---- 331
Query: 783 HDYQDACVDKLERFMRGELNSYRSALSVKSDPPST-PNILNKVNA--PTYQRMH-SNDSS 838
+ + M LS+ + + +NK N+ P +++ S
Sbjct: 332 --------EGVPSPM----------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISL--- 370
Query: 839 KGSNGDTMEYTFYSMLI----RYLLILCPRRRKSSSPSPYLPSHTSWRPPTSPKSQQLRR 894
NG ++++ + L L RK+ +PS S P S+ R
Sbjct: 371 --VNGAK------NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-------PFSE---R 412
Query: 895 KGPGNM---PVRA--HSLEGLIEPAPPR-NSTLESGQVNKSVSLENEL-----DTI--SD 941
K + PV + HS L+ PA N L V+ + ++ DT SD
Sbjct: 413 KLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAK---DIQIPVYDTFDGSD 467
Query: 942 VTQTSDTDSTRSKTKNFMDKCVNKMKSLINKKPASH 977
+ + + + V + + A+H
Sbjct: 468 L-RVLSGSISERIVDCIIRLPVKWETTT--QFKATH 500
Score = 59.7 bits (144), Expect = 4e-09
Identities = 71/463 (15%), Positives = 143/463 (30%), Gaps = 144/463 (31%)
Query: 92 SAAQIDEILNLDFDDLEK--LSKN---SLVSQ--QNIDAIIAK--------YTGC----- 131
Q D++LNL + E L N +L ++ Q D + K T
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 132 ----------LENIVQDSVKLFAI--------KVFS-MKEVF-----ILRSFILYL-QVM 166
+ + + +L AI F +++++ ++ I + + +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 167 QNFSSDQEKRAPAVLDKVNDLMQKAW---AVPTHGHE-----------IG-YSLCN---T 208
A V + ++++ W T + IG L + T
Sbjct: 196 SELIRTTLD-AEKVFTQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 209 LRNCG---G--MDLL--ISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVA 261
+ G G L + + L +A + + + E+ V + + +
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQ---GLV--TAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 262 CVCTKNINSVEHSRVGTGILEHLFKHSEGTCS---DVIGL--GGLDTVLFECRKNDIETL 316
C + + ++ + ILE +++EG S + L + + + + +
Sbjct: 308 VRCYE---AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAG 363
Query: 317 RHCAGALAN-----------LSLYG-----------GAENQEAMI---KRK-VPVWLF-P 349
+ +L N SLYG +Q + I +RK F P
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLP 422
Query: 350 LA--FHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPS 407
+A FH+ L A + K + + V + D+ P V +
Sbjct: 423 VASPFHSH----L---LVPAS--------DLINKDLVKNNVSFNAK-DIQIP-V--YDT- 462
Query: 408 EFAKSNLAHAHGQNRNWLQKLVPVLSSKR---EEARNLAAFHF 447
F S+L G + +++V + E A H
Sbjct: 463 -FDGSDLRVLSG---SISERIVDCIIRLPVKWETTTQFKATHI 501
Score = 49.3 bits (117), Expect = 6e-06
Identities = 50/287 (17%), Positives = 89/287 (31%), Gaps = 87/287 (30%)
Query: 43 AQSAQSNIKFTTKGMTKSLMTSASQMSHMVNGTTTSTKMITSSASSSGISAAQIDEIL-- 100
A N + SL + S M+ S S ++ Q+ + +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEGVPSPML--------------SISNLTQEQVQDYVNK 355
Query: 101 -NLDFDDLEKLSKNSLV-SQQNIDAIIAKYTGCLENIVQDSVKLFA--------IKVFS- 149
N +++ SLV +N+ +++ L + K A I FS
Sbjct: 356 TNSHLPAGKQVEI-SLVNGAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP-FSE 411
Query: 150 MKEVFILRSFILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTL 209
K F R +L V F S A +++K DL++ + + +I + +T
Sbjct: 412 RKLKFSNR----FLPVASPFHSHLLVPASDLINK--DLVKNNVSF--NAKDIQIPVYDT- 462
Query: 210 RNCGGMDLLISNCVEKDLDLQFSSARLLE---QCLTTENRD----------HVVENGLDK 256
G DL+ S + E C+ H+++ G
Sbjct: 463 -FDGS-------------DLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 257 VVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDT 303
+ + +N + GTG+ VI G LD
Sbjct: 509 ASGLGVLTHRNKD-------GTGV-------------RVIVAGTLDI 535
Score = 39.6 bits (92), Expect = 0.006
Identities = 49/291 (16%), Positives = 84/291 (28%), Gaps = 100/291 (34%)
Query: 284 LFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGG---AENQEAMIK 340
++ ++ D G LD V N + H G G EN AMI
Sbjct: 1645 VWNRADNHFKDTYGFSILDIV----INNPVNLTIHFGG-------EKGKRIRENYSAMIF 1693
Query: 341 RKVP------VWLFP--------LAFHNDD---NIKYYACLAIAVLVANTEIEAAVLKSV 383
+ +F F ++ + + A+ + +E A +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL------MEKAAFE-- 1745
Query: 384 QEAAVLKSGTLDLVEPFVMSHSPSEF----AKSN---------LAHAHGQNRNWLQKLVP 430
LKS L + HS E+ + ++ + G +Q VP
Sbjct: 1746 ----DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM---TMQVAVP 1798
Query: 431 VLSSKREEARNLA------AFHFCMEA------GIKKQQGKTDIFKEI------------ 466
R +A A F EA + K+ G EI
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW---LVEIVNYNVENQQYVA 1855
Query: 467 -GAIEPLKKVASCPNAVASKYAAQTLRLIGETVPHKLSQQVPLWSTEDVRE 516
G + L V + N + + + +I +L + + S E+V
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQ----KIDII------ELQKSL---SLEEVEG 1893
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix
bundle, signaling protein, actin-binding, alternative
splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Length = 86
Score = 56.0 bits (135), Expect = 5e-10
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRF 563
+ + W+R IG Y V + D + L + EE L ++ G+ + +R
Sbjct: 20 HMSGLGEAGMSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDL-EEAGVQDPAHKRLL 78
Query: 564 ERELQNLK 571
LQ K
Sbjct: 79 LDTLQLSK 86
Score = 35.6 bits (82), Expect = 0.007
Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 577 SSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHRL 633
S ++ +L + L + Y +++ G D + + ++EE L E G+ + H+
Sbjct: 22 SGLGEAGMSAWLRAIGLER----YEEGLVHNGWDDLEFLSDITEEDLE-EAGVQDPAHKR 76
Query: 634 RIMEAIHEIE 643
+++ + +
Sbjct: 77 LLLDTLQLSK 86
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free
protein synthesis, protein regulation, lipid metabolism,
structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Length = 97
Score = 56.3 bits (135), Expect = 5e-10
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRD-DIGIHNGIQRRR 562
++V WS + V +W+ + EY G L+ L +E + + + +R
Sbjct: 15 KEVVYWSPKKVADWLLENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRVSSDNGQR 72
Query: 563 FERELQNLKK 572
++ LK
Sbjct: 73 LLDMIETLKM 82
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 58.4 bits (142), Expect = 1e-09
Identities = 47/222 (21%), Positives = 83/222 (37%), Gaps = 32/222 (14%)
Query: 289 EGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLF 348
G+ L ++ + D + L+ L+ ++ GG E +A+I L
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIA-SGGNEQIQAVIDAGALPALV 60
Query: 349 PLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLD-LVEPFVMSHSPS 407
L ++ I A A++ + + Q AV+ +G L LV+ ++S
Sbjct: 61 QLLSSPNEQILQEALWALSNIASGGN--------EQIQAVIDAGALPALVQ--LLSSPNE 110
Query: 408 EFAK------SNLAHAHGQNR------NWLQKLVPVLSSKREEARNLAA---FHFCMEAG 452
+ + SN+A + L LV +LSS E+ A +
Sbjct: 111 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170
Query: 453 IKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+KQ KE GA+E L+++ S N K A + L +
Sbjct: 171 EQKQ-----AVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 28.8 bits (65), Expect = 6.8
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 30/132 (22%)
Query: 210 RNCGGMDLLISNCVEKDLDLQFSSARLLEQ--CLTTENRDHVVENGL------------D 255
+ G + L+ + + + L E V++ G +
Sbjct: 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 256 KVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIET 315
++++ A L ++ V G L+ + + +
Sbjct: 153 QILQEALWA----------------LSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 196
Query: 316 LRHCAGALANLS 327
+ AL L
Sbjct: 197 QKEAQEALEKLQ 208
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 54.4 bits (131), Expect = 2e-09
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 500 HKLSQQVP-LWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNG 557
L Q+ P + V EW+R I Y +F + +L+ Q++ E L IG+
Sbjct: 3 PLLDQRQPHYSAFGSVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDL-LRIGVTLA 61
Query: 558 IQRRRFERELQNLK 571
+++ +Q++K
Sbjct: 62 GHQKKILASVQHMK 75
Score = 34.3 bits (79), Expect = 0.020
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 589 LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWN 647
+ +G+ Y S AG + + +S E L+ G+ + H+ +I+ ++ ++ +
Sbjct: 25 IKMGR----YEESFAAAGFGSFELVSQISAEDLL-RIGVTLAGHQKKILASVQHMKSQAK 79
Query: 648 K 648
Sbjct: 80 P 80
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 59.9 bits (144), Expect = 3e-09
Identities = 50/300 (16%), Positives = 95/300 (31%), Gaps = 44/300 (14%)
Query: 213 GGMDLLISNCVEKDLDLQFSSARLL-EQCLTTENRDHVVENGL-----------DKVVRV 260
G + ++++ D Q + L + + E G+ D +
Sbjct: 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVR 349
Query: 261 ACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCA 320
A V + S + L D + R A
Sbjct: 350 ALVGLCKLGSYGGQDAAIRPFGD---------GAALKLAEACRRFLIKPGKDKDIRRWAA 400
Query: 321 GALANLSLYGGAENQEAMIKRKVPVW-LFPLAFHNDDNIKYYACLAIAVLVANTEIEAAV 379
LA L+L AE +E +I+ K + L LA + + Y L E + +
Sbjct: 401 DGLAYLTLD--AECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEML 458
Query: 380 LKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQ-----NRNWLQKLVPVLSS 434
+ ++ A K H P E ++ + + N L + +
Sbjct: 459 PEMIELAKFAKQ------------HIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506
Query: 435 KREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+ ++ L A G+K+ +GK + +E G ++ L ++A ++A Q L I
Sbjct: 507 ESHNSQELIARVLNAVCGLKELRGK--VVQE-GGVKALLRMALEGTEKGKRHATQALARI 563
Score = 47.1 bits (111), Expect = 2e-05
Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 45/291 (15%)
Query: 208 TLRNCGGMDLLISNCVEKDLDLQFSSARLLEQ-CLTTENRDHVVENGLDKVVRVACVCTK 266
+ GG+ L+ +E + + + L + +T V+R +
Sbjct: 531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQ 590
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ + L +L +E +I G+ + + ++ + R A L NL
Sbjct: 591 QDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEA 386
+ +V L L D+ A+A++ + +
Sbjct: 651 VMSEDVIKMFEGNNDRVKF-LALLCEDEDEETATACAGALAIITSVSV------------ 697
Query: 387 AVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFH 446
+WL L ++++ ++
Sbjct: 698 --------------------------KCCEKILAIASWLDILHTLIANPSPAVQHRGI-- 729
Query: 447 FCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPN---AVASKYAAQTLRLI 494
+ I + E +E L + P+ A A + A Q L
Sbjct: 730 VIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780
Score = 41.4 bits (96), Expect = 0.002
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 13/151 (8%)
Query: 275 RVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAEN 334
R L +L + + + C D ET CAGALA ++
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700
Query: 335 QEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTL 394
++ + L L + +++ + I ++ E A + ++ +
Sbjct: 701 EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIA--------KKLFETDIM 752
Query: 395 DLVEPFVMSHSP-----SEFAKSNLAHAHGQ 420
+L+ E A LA A
Sbjct: 753 ELLSGLGQLPDDTRAKAREVATQCLAAAERY 783
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 54.2 bits (130), Expect = 4e-09
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 496 ETVPHKLSQQV--PLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRD 550
++ K ++ P + V +W+ IG +Y N+ + + D + + ++ L
Sbjct: 5 TSLYKKAGSEMNGPRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLL- 63
Query: 551 DIGIHNGIQRRRFERELQNLKKMADYSSKD 580
+IGI N R+R + +Q L KM
Sbjct: 64 EIGILNSGHRQRILQAIQLLPKMRPIGHDG 93
Score = 33.0 bits (75), Expect = 0.096
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Query: 575 DYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD---KDSIKALSEEQLICECGIHNS 629
+ V + +L + L Q Y ++ G D + ++ L+ E GI NS
Sbjct: 16 NGPRCPVQTVGQWLESIGLPQ----YENHLMANGFDNVQFMGSNVMEDQDLL-EIGILNS 70
Query: 630 IHRLRIMEAIHEI 642
HR RI++AI +
Sbjct: 71 GHRQRILQAIQLL 83
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR
domain, TLRS adaptor, immune system; 2.40A {Homo
sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Length = 146
Score = 55.1 bits (133), Expect = 4e-09
Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 29/146 (19%)
Query: 643 EREWNKEYEDNPDKNLDVFISYRRSNGSQLASLLKVHLE--LRQFKVFIDVERLEAGK-F 699
W+K+Y DV + + + A L +LE + F+ + G
Sbjct: 4 SSRWSKDY--------DVCVCHSEED-LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAI 54
Query: 700 DNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCN----IIPIL 755
+ L Q++ + +L++TP L + W +++ AL IP+L
Sbjct: 55 VSELCQALSSSHCRVLLITPGFL-------QDP---WCKYQMLQALTEAPGAEGCTIPLL 104
Query: 756 DNFAWPDPEQLPADMRAICKFNGVRW 781
P ++R + +G
Sbjct: 105 SG---LSRAAYPPELRFMYYVDGRGP 127
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 52.8 bits (127), Expect = 6e-09
Identities = 13/72 (18%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 502 LSQQVP-LWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQ 559
+ + P S V EW+ I +Y +F + D++ Q+ E + +G+
Sbjct: 1 MEKTRPDYTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGH 59
Query: 560 RRRFERELQNLK 571
+++ +Q ++
Sbjct: 60 QKKILNSIQVMR 71
Score = 33.6 bits (77), Expect = 0.032
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 589 LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWN 647
+ +GQ Y S NAG D + + E ++ G+ + H+ +I+ +I + + N
Sbjct: 21 IKMGQ----YKESFANAGFTSFDVVSQMMMEDIL-RVGVTLAGHQKKILNSIQVMRAQMN 75
Query: 648 K 648
+
Sbjct: 76 Q 76
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 53.3 bits (128), Expect = 6e-09
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 502 LSQQVP-LWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQ 559
L + +P + V +W+ I +Y ++F+ + L+ Q+ E L IGI
Sbjct: 12 LDRSIPDFTAFTTVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLL-RIGITLAGH 70
Query: 560 RRRFERELQNLK 571
+++ + +++
Sbjct: 71 QKKILNSIHSMR 82
Score = 35.2 bits (81), Expect = 0.017
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 589 LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642
+ + Q Y S L AG + ++ E L+ GI + H+ +I+ +IH +
Sbjct: 32 IKMVQ----YRDSFLTAGFTSLQLVTQMTSEDLL-RIGITLAGHQKKILNSIHSM 81
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
a.60.1.2
Length = 81
Score = 51.7 bits (124), Expect = 1e-08
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFEREL 567
S V +W+ I Y ++F ++L++N + + +GI +++ +
Sbjct: 5 SSGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDV-RALGITLMGHQKKILGSI 63
Query: 568 QNLK 571
Q ++
Sbjct: 64 QTMR 67
Score = 36.7 bits (85), Expect = 0.003
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 577 SSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRL 633
S + ++L + +G+ Y G + ++ + + GI H+
Sbjct: 3 SGSSGLTVGDWLDSIRMGR----YRDHFAAGGYSSLGMVLRMNAQDVR-ALGITLMGHQK 57
Query: 634 RIMEAIHEIEREWNKEYEDNP 654
+I+ +I + + P
Sbjct: 58 KILGSIQTMRAQLTSTQGSGP 78
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 55.8 bits (135), Expect = 2e-08
Identities = 34/203 (16%), Positives = 75/203 (36%), Gaps = 19/203 (9%)
Query: 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQCL--TTENRDHVVENG-LDKVVRVACVCT 265
+ + G + L+ + + + L E V++ G L +V+ + +
Sbjct: 50 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ--LLSS 107
Query: 266 KNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALAN 325
N ++ + L ++ VI G L ++ + + L+ AL+N
Sbjct: 108 PNEQILQEA---LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164
Query: 326 LSLYGGAENQEAMIKRK-VPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQ 384
++ GG E +A+I +P L L ++ I A A++ + + +
Sbjct: 165 IAS-GGNEQIQAVIDAGALPA-LVQLLSSPNEQILQEALWALSNIASGGNEQK------- 215
Query: 385 EAAVLKSGTLDLVEPFVMSHSPS 407
AV ++G L+ +E +
Sbjct: 216 -QAVKEAGALEKLEQLQSHENEK 237
Score = 51.1 bits (123), Expect = 5e-07
Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 32/264 (12%)
Query: 245 NRDHVVENG-LDKVVRVACVCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDT 303
+ H L ++ + N + ++ T + VI G L
Sbjct: 4 SHHHHHHGSELPQMTQQL-----NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPA 58
Query: 304 VLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYAC 363
++ + + L+ AL+N++ GG E +A+I L L ++ I A
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Query: 364 LAIAVLVANTEIEAAVLKSVQEAAVLKSGTLD-LVEPFVMSHSPSEFAK------SNLAH 416
A++ + + Q AV+ +G L LV+ ++S + + SN+A
Sbjct: 118 WALSNIASGGN--------EQIQAVIDAGALPALVQ--LLSSPNEQILQEALWALSNIAS 167
Query: 417 AHGQNRNW------LQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIE 470
+ L LV +LSS E+ A + + + KE GA+E
Sbjct: 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW--ALSNIASGGNEQKQAVKEAGALE 225
Query: 471 PLKKVASCPNAVASKYAAQTLRLI 494
L+++ S N K A + L +
Sbjct: 226 KLEQLQSHENEKIQKEAQEALEKL 249
Score = 34.6 bits (80), Expect = 0.13
Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 211 NCGGMDLLISNCVEKDLDLQFSSARLLEQCL--TTENRDHVVENGLDKVVRVACVCTKNI 268
+ G + L+ + + + L E V++ G + V + + N
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNE 194
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLS 327
++ + L ++ V G L+ + + + + AL L
Sbjct: 195 QILQEA---LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 56.9 bits (137), Expect = 2e-08
Identities = 53/323 (16%), Positives = 110/323 (34%), Gaps = 44/323 (13%)
Query: 204 SLCNTLRN-----CGGMDLLISNCVEKDLDLQFSSARLLEQCLT-TENRDHVVENG---- 253
+ C T GMD + + +L + E+R + E G
Sbjct: 134 AYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQA 193
Query: 254 LDKVVRVACVCTKNINSVEHSRV---GTGILEHLFKHSEGTCSDVIGL-GGLDTVLFECR 309
+ ++++V C N + L +L + + + G + ++ + +
Sbjct: 194 IAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK 253
Query: 310 KNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFH-NDDNIKYYACLAIAV 368
+ + A L NLS +++ + + L A ++ A+
Sbjct: 254 SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313
Query: 369 LVANTEIEAAVLKSVQEA-AVL--------KSGTLDLVEP--FVMSHSPSEFAKSNLAHA 417
L A+ A + +V A A L ++ TL ++E ++ + S A +
Sbjct: 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ 373
Query: 418 HGQNRNWLQKLVPVLSSK----REEA----RNLAAFHFCMEAGIKKQQGKTDIFKEIGAI 469
+ N LQ L+ L S A NL+A + + + ++ GA+
Sbjct: 374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARN---------PKDQEALWDM-GAV 423
Query: 470 EPLKKVASCPNAVASKYAAQTLR 492
LK + + + + +A LR
Sbjct: 424 SMLKNLIHSKHKMIAMGSAAALR 446
Score = 32.2 bits (73), Expect = 0.80
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 9/126 (7%)
Query: 216 DLLISNCVEKDLDLQFSSARLLEQCLTT-----ENRDHVVENGLDKVVRVACVCTKNINS 270
L L + S +L + ++R + EN + + + + + ++
Sbjct: 337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL-LQHLKSHSLTI 395
Query: 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYG 330
V ++ G L +L + + +G + + A AL NL
Sbjct: 396 VSNA---CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452
Query: 331 GAENQE 336
A+ ++
Sbjct: 453 PAKYKD 458
Score = 28.8 bits (64), Expect = 9.3
Identities = 30/239 (12%), Positives = 59/239 (24%), Gaps = 40/239 (16%)
Query: 278 TGILEHLFKHSEGTCSDVIGLGGL------------DTVLFECRKNDIETLRHCAGALAN 325
+ L + + C + G L D+VL + E + AL N
Sbjct: 50 SRTLLAMSSSQDS-CISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108
Query: 326 LSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQE 385
+ + + + + L + + + + A ++
Sbjct: 109 IIH--SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQIC 166
Query: 386 AAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAF 445
AV L +S + + G LQ + +L E
Sbjct: 167 PAV---CVL-----MKLSFDEE--HRHAMNELGG-----LQAIAELLQVDCEMYGLTNDH 211
Query: 446 HFC---MEAG-------IKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+ AG K + G + L + + A LR +
Sbjct: 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing
protein 3; SAM domain, helix bundle, cell membrane, cell
projection, cytoplasm; NMR {Homo sapiens}
Length = 100
Score = 51.4 bits (123), Expect = 3e-08
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 509 WSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFEREL 567
D+ W+ + +YA+ F + L E L+ +GI R+R R L
Sbjct: 24 PQDLDIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELK-QLGISATGHRKRILRLL 82
Query: 568 QNLKK 572
Q +
Sbjct: 83 QTGTE 87
Score = 36.0 bits (83), Expect = 0.009
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 575 DYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIH 631
++ ++ +L ++L Q Y + G+ + + L E+L + GI + H
Sbjct: 20 HMAAPQDLDIAVWLATVHLEQ----YADTFRRHGLATAGAARGLGHEELK-QLGISATGH 74
Query: 632 RLRIMEAIHEIERE 645
R RI+ + E
Sbjct: 75 RKRILRLLQTGTEE 88
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.40A {Homo sapiens}
Length = 86
Score = 50.6 bits (121), Expect = 4e-08
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 504 QQVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRR 562
V EW+ I +Y +F+ + + ++Q+ + ++ IG+ ++R
Sbjct: 14 LYFQGVPFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQKR 72
Query: 563 FERELQNLK 571
L LK
Sbjct: 73 IAYSLLGLK 81
Score = 32.9 bits (75), Expect = 0.068
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 577 SSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRL 633
++ +L + + Q YT + AG + + ++ + + G+ H+
Sbjct: 17 QGVPFRTVSEWLESIKMQQ----YTEHFMAAGYTAIEKVVQMTNDDIK-RIGVRLPGHQK 71
Query: 634 RIMEAIHEI 642
RI ++ +
Sbjct: 72 RIAYSLLGL 80
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 50.6 bits (121), Expect = 5e-08
Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 502 LSQQVPLWST-EDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQ 559
L P +S V +W++ I Y +NF + + ++ ++++ L IGI
Sbjct: 16 LDPSSPEFSAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDL-ARIGITAITH 74
Query: 560 RRRFERELQNLK 571
+ + +Q ++
Sbjct: 75 QNKILSSVQAMR 86
Score = 34.5 bits (79), Expect = 0.027
Identities = 9/55 (16%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 589 LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642
+ + + Y + AG +++ +S++ L GI H+ +I+ ++ +
Sbjct: 36 IKMDR----YKDNFTAAGYTTLEAVVHMSQDDLA-RIGITAITHQNKILSSVQAM 85
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 49.8 bits (119), Expect = 6e-08
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLL---QLNEEHLRDDIGIHNGIQRRRF 563
P + V +W+ IG +Y N+ + + D + + ++ L +IGI N R+R
Sbjct: 8 PRCPVQTVGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDL-LEIGILNSGHRQRI 66
Query: 564 ERELQNLK 571
+ +Q L
Sbjct: 67 LQAIQLLP 74
Score = 33.3 bits (76), Expect = 0.053
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 573 MADYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAG---VDKDSIKALSEEQLICECGIH 627
+ V + +L + L Q Y ++ G V + ++ L+ E GI
Sbjct: 4 GSSGPRCPVQTVGQWLESIGLPQ----YENHLMANGFDNVQFMGSNVMEDQDLL-EIGIL 58
Query: 628 NSIHRLRIMEAIHEI 642
NS HR RI++AI +
Sbjct: 59 NSGHRQRILQAIQLL 73
>3k1r_B Usher syndrome type-1G protein; protein-protein complex,
alternative splicing, coiled coil, deafness, hearing,
non-syndromic deafness, polymorphism; 2.30A {Homo
sapiens}
Length = 74
Score = 49.3 bits (118), Expect = 7e-08
Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 511 TEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNL 570
T + ++ + ++A + ++D + L+ ++ LR I + G R + ++
Sbjct: 2 TSPLETFLASLHMEDFAALLRQEKIDLEALMLCSDLDLR-SISVPLGP-REKILGAVRRR 59
Query: 571 KKMAD 575
++ +
Sbjct: 60 RQAME 64
Score = 31.6 bits (72), Expect = 0.17
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 580 DVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAI 639
+ + L FL +L + + +D +++ S+ L + R +I+ A+
Sbjct: 1 ETSPLETFLASLH--MEDFAALLRQEKIDLEALMLCSDLDLR-SISVP-LGPREKILGAV 56
Query: 640 HEIEREWNKEYEDNPDKNLD 659
++ + P D
Sbjct: 57 RR-----RRQAMERPPALED 71
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 55.0 bits (132), Expect = 9e-08
Identities = 41/312 (13%), Positives = 84/312 (26%), Gaps = 40/312 (12%)
Query: 207 NTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTEN---RDHVVENGLDKVVRVACV 263
+ + C M+ ++ L ++ L + VV L + ++
Sbjct: 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-- 266
Query: 264 CTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGAL 323
E + +L + VI + ++ A+
Sbjct: 267 ---YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323
Query: 324 ANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSV 383
N+ G + +I V L L +NIK AC I+ + A
Sbjct: 324 GNIV-TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-------- 374
Query: 384 QEAAVLKSGTLDLVEPFVMSHSP-----SEFAKSNLAHAHGQNR---------NWLQKLV 429
Q AV+ + + + + + +A SN + Q ++ L
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 430 PVLSSKREEARNLAAFHF---------CMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPN 480
+L + EA D ++ G +E + N
Sbjct: 435 DLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN 494
Query: 481 AVASKYAAQTLR 492
+ A + +
Sbjct: 495 DKIYEKAYKIIE 506
Score = 48.9 bits (116), Expect = 6e-06
Identities = 41/288 (14%), Positives = 87/288 (30%), Gaps = 22/288 (7%)
Query: 218 LISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVG 277
+ D+ Q S+ Q L+ E+R + VV +
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 278 TGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEA 337
L ++ + V+ + + +E AL N++ + ++
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG-DSTDYRDY 210
Query: 338 MIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLV 397
+++ + L N ++ A ++ L K Q + S L +
Sbjct: 211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG--------KKPQPDWSVVSQALPTL 262
Query: 398 EPFVMSHSPSE-----FAKSNLAHAHGQNRNW------LQKLVPVLSSKREEARNLAAFH 446
+ S +A S L+ + ++LV +LS + + A
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL-- 320
Query: 447 FCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+ + +T + G + L+ + S P K A T+ I
Sbjct: 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 88
Score = 49.1 bits (117), Expect = 1e-07
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
V EW+ I +Y +F+ + + ++Q+ + + IG+ ++R L
Sbjct: 11 PFRTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDV-KRIGVRLPGHQKRIAYSLL 69
Query: 569 NLK 571
LK
Sbjct: 70 GLK 72
Score = 34.0 bits (78), Expect = 0.034
Identities = 9/58 (15%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 589 LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645
+ + Q YT + AG + + ++ + + G+ H+ RI ++ ++ +
Sbjct: 22 IKMQQ----YTEHFMAAGYTAIEKVVQMTNDDVK-RIGVRLPGHQKRIAYSLLGLKDQ 74
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics,
structural genomics consortium, SGC, alternative
splicing, ATP-binding; 2.10A {Homo sapiens}
Length = 90
Score = 49.4 bits (118), Expect = 1e-07
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFER 565
+ V EW++ I Y +NF + + + + ++ E + +GI +++
Sbjct: 21 DFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDV-MSLGITLVGHQKKIMS 79
Query: 566 ELQNLK 571
+Q ++
Sbjct: 80 SIQTMR 85
Score = 35.9 bits (83), Expect = 0.007
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 559 QRRRFERELQNLKKMADYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKAL 615
+NL ++ +L + + + Y + AG + +S+ +
Sbjct: 3 HHHHHSSGRENLYFQGTPDFTTFCSVGEWLQAIKMER----YKDNFTAAGYNSLESVARM 58
Query: 616 SEEQLICECGIHNSIHRLRIMEAIHEI 642
+ E ++ GI H+ +IM +I +
Sbjct: 59 TIEDVM-SLGITLVGHQKKIMSSIQTM 84
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM domain,
EF-SAM, STIM1, store operated calcium entry regulator,
SOCE; NMR {Homo sapiens}
Length = 150
Score = 50.4 bits (120), Expect = 2e-07
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 506 VPLWSTEDVREWVRQ-IGFAEYANNFVESRVDGDLLLQL---NEEHLRDDIGIHNGIQRR 561
V W+ ++V +W+ + +Y F + ++ G + +L N + + + R+
Sbjct: 78 VYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQ 137
Query: 562 R 562
+
Sbjct: 138 K 138
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding,
transferase, tyrosine-protein kinase, signal, sterIle
alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Length = 82
Score = 47.9 bits (114), Expect = 4e-07
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 500 HKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGI 558
L Q V EW+ I Y +F + +D + +L+L E L +GI
Sbjct: 12 ENLYFQGDGIPYRTVSEWLESIRMKRYILHFHSAGLDTMECVLELTAEDL-TQMGITLPG 70
Query: 559 QRRRFERELQNL 570
++R +Q
Sbjct: 71 HQKRILCSIQGF 82
Score = 35.6 bits (82), Expect = 0.008
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 564 ERELQNLKKMADYSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVD-KDSIKALSEEQL 620
++ +L + + + Y +AG+D + + L+ E L
Sbjct: 6 HHSSGRENLYFQGDGIPYRTVSEWLESIRMKR----YILHFHSAGLDTMECVLELTAEDL 61
Query: 621 ICECGIHNSIHRLRIMEAIHE 641
+ GI H+ RI+ +I
Sbjct: 62 T-QMGITLPGHQKRILCSIQG 81
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 48.0 bits (114), Expect = 4e-07
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
D+++++ I +Y +F ES +N+ L IGI RRR ++LQ +
Sbjct: 17 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGHRRRILKQLQIIL 75
Query: 572 K 572
Sbjct: 76 S 76
Score = 33.4 bits (76), Expect = 0.055
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 577 SSKDVTNLNNFL--LNLGQEFSIYTYSMLNAG-VDKDSIKALSEEQLICECGIHNSIHRL 633
S+ ++ +FL +NL Q Y +G A+++ L + GI + HR
Sbjct: 11 VSEVNVDIKDFLMSINLEQ----YLLHFHESGFTTVKDCAAINDSLLQ-KIGISPTGHRR 65
Query: 634 RIMEAIHEIEREWNK--EYEDNP 654
RI++ + I + Y P
Sbjct: 66 RILKQLQIILSKMQDIPIYASGP 88
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 47.6 bits (113), Expect = 7e-07
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 507 PLWSTEDVREWVRQIGFAEYANNFVESR---VDGDLLLQLNEEHLRDDIGIHNGIQRRRF 563
+ V EW+ IG +Y + + + V + E+ L DIGI + RR+
Sbjct: 25 LRTLEQSVGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDL-RDIGISDPQHRRKL 83
Query: 564 ERELQNLKKM 573
+ ++L K+
Sbjct: 84 LQAARSLPKV 93
Score = 33.0 bits (75), Expect = 0.091
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 589 LNLGQEFSIYTYSMLNAG---VDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIERE 645
+ L Q Y +L G V + E+ L + GI + HR ++++A + +
Sbjct: 39 IGLQQ----YESKLLLNGFDDVHFLGSNVMEEQDLR-DIGISDPQHRRKLLQAARSLPKV 93
Query: 646 WNKEYEDN 653
Y+ N
Sbjct: 94 KALGYDGN 101
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 51.5 bits (122), Expect = 1e-06
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 6/173 (3%)
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328
L+HL ++ +DV L G+ ++ E GAL N+S
Sbjct: 60 RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119
Query: 329 YGGAENQEAMIKRKVPVWLFPLAFH-NDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAA 387
+N+ A+ L L D ++ + L ++ I+ ++ A
Sbjct: 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHAL 179
Query: 388 VLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEAR 440
++ P+E K N + +SS+R EAR
Sbjct: 180 TD----EVIIPHSGWEREPNEDCKPRHIEWESVLTN-TAGCLRNVSSERSEAR 227
Score = 39.9 bits (92), Expect = 0.004
Identities = 38/260 (14%), Positives = 85/260 (32%), Gaps = 11/260 (4%)
Query: 165 VMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVE 224
++N SS++ + + + + L+ + S + NC + +S V
Sbjct: 215 CLRNVSSERSEARRKLRE-CDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273
Query: 225 KDLD---LQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGTGIL 281
+++ +A + T +VVR+ K + G +
Sbjct: 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAI 333
Query: 282 EHL----FKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEA 337
++L + + S + L + ++ +GAL NL++ A N+E
Sbjct: 334 QNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV--DARNKEL 391
Query: 338 MIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLKSGTLDLV 397
+ K +P + L N + + + NT E + ++ ++ +
Sbjct: 392 IGKHAIPNLVKNLP-GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL 450
Query: 398 EPFVMSHSPSEFAKSNLAHA 417
S + SE A
Sbjct: 451 VLINKSGNRSEKEVRAAALV 470
Score = 33.0 bits (74), Expect = 0.59
Identities = 24/150 (16%), Positives = 42/150 (28%), Gaps = 11/150 (7%)
Query: 271 VEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYG 330
+H R L+ L K G L V+ + A L +L Y
Sbjct: 22 AQHERGSLASLDSLRK--GGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLC-YR 78
Query: 331 GAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAVLK 390
+ + + K K L L H + AC A+ + + + + A
Sbjct: 79 NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD------NKIAIKNC 132
Query: 391 SGTLDLVEPFVMSHSPSEFAKSNLAHAHGQ 420
G LV ++ + +
Sbjct: 133 DGVPALVR--LLRKARDMDLTEVITGTLWN 160
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 45.5 bits (108), Expect = 2e-06
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 512 EDVREWVRQIGFAEYANNFVES-RVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNL 570
+ ++E++ +I EY + + + D L + E HL ++ I + R R ++L
Sbjct: 13 QTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHL-IELNIADPEDRARLLSAAESL 71
Query: 571 K 571
Sbjct: 72 L 72
Score = 35.5 bits (82), Expect = 0.008
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 589 LNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642
++L + YT ++L G + D +K + E LI E I + R R++ A +
Sbjct: 22 IHLQE----YTSTLLLNGYETLDDLKDIKESHLI-ELNIADPEDRARLLSAAESL 71
>2l5y_A Stromal interaction molecule 2; EF-hand, SAM domain, store OPE
calcium entry, signaling protein; NMR {Homo sapiens}
Length = 150
Score = 47.3 bits (112), Expect = 2e-06
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 509 WSTEDVREWVRQ-IGFAEYANNFVESRVDGDLLLQL---NEEHLRDDIGIHNGIQRRR 562
W+ ED +W+ + + +Y NF ++ V G L ++ + + I + R++
Sbjct: 81 WTLEDTLQWLIEFVELPQYEKNFRDNNVKGTTLPRIAVHEPSFMISQLKISDRSHRQK 138
>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM
domain, pointed domain, SCM domain, STE50 regulator,
transferase; NMR {Saccharomyces cerevisiae} SCOP:
a.60.1.2 PDB: 1x9x_A
Length = 85
Score = 45.3 bits (107), Expect = 3e-06
Identities = 10/75 (13%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 507 PLWSTEDVREWVRQIGFAEYANNFVESRV-DGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
V+ ++ +IG +Y ++F++ + + + L+++ L +G++ R + R
Sbjct: 11 KTNDLPFVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILI-ALGVNKIGDRLKILR 69
Query: 566 ELQNLKKMADYSSKD 580
+ ++ ++ +
Sbjct: 70 KSKSFQRDKRIEQVN 84
Score = 30.3 bits (68), Expect = 0.52
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 580 DVTNLNNFL--LNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIME 637
D+ + FL + Q + V ++ IK L ++ LI G++ RL+I+
Sbjct: 14 DLPFVQLFLEEIGCTQYLDSFIQ---CNLVTEEEIKYLDKDILI-ALGVNKIGDRLKILR 69
Query: 638 AIHEIERE 645
+R+
Sbjct: 70 KSKSFQRD 77
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity,
immune response, leucine-rich repeat, glycoprotein,
transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Length = 178
Score = 46.5 bits (110), Expect = 8e-06
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 20/149 (13%)
Query: 646 WNKEYEDNPDKNLDVFISYRRSNGSQLASLLKVHLELRQ--FKVFIDVERLEAGKF-DNN 702
+ + + FISY + + + L +LE + + + GK N
Sbjct: 24 KTTQEQLKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISEN 83
Query: 703 LLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-----SGCNIIPI-LD 756
++ I+++ + VL+P + ++E W H E A + +II I L+
Sbjct: 84 IVSFIEKSYKSIFVLSPNFV-------QNE---WCHYEFYFAHHNLFHENSDHIILILLE 133
Query: 757 NFAWPDPEQLPADMRAICKFNGV-RWIHD 784
+ ++A+ + W D
Sbjct: 134 PIPFYCIPTRYHKLKALLEKKAYLEWPKD 162
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein
synthesis, protein regulation, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 97
Score = 41.8 bits (98), Expect = 7e-05
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
V +W+ IG YA + + L+ L+ + GI R+ +
Sbjct: 22 CISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQ-EAGITEERHIRKLLSAAR 80
Query: 569 NLK 571
K
Sbjct: 81 LFK 83
Score = 32.6 bits (74), Expect = 0.11
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 589 LNLGQEFSIYTYSMLNAGVDK-DSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWN 647
+ L Y ++ AG + +LS L E GI H +++ A +
Sbjct: 33 IGLPM----YAGTLSTAGFSTLSQVPSLSHTCLQ-EAGITEERHIRKLLSAARLFKLPPG 87
Query: 648 KEYEDNP 654
E P
Sbjct: 88 PEAMSGP 94
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 44.4 bits (104), Expect = 2e-04
Identities = 30/179 (16%), Positives = 55/179 (30%), Gaps = 17/179 (9%)
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328
++ +G ++H E V LGG+ ++ R + + AGAL NL
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV- 72
Query: 329 YGGAENQEAMIK-RKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTE-----IEAAVLKS 382
+ N+ + + + L + I+ + L + E I A+
Sbjct: 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVL 132
Query: 383 VQEAAVLKSGTLDLVEPFVMSHSPSEFAK------SNLAHAHGQNRNWLQK---LVPVL 432
+ SG D E NL+ R ++ L+ L
Sbjct: 133 ADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSS-ADAGRQTMRNYSGLIDSL 190
Score = 41.4 bits (96), Expect = 0.001
Identities = 42/327 (12%), Positives = 88/327 (26%), Gaps = 51/327 (15%)
Query: 208 TLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKN 267
+ GG+ L+ + ++Q ++A L + L + + +E +R A +
Sbjct: 39 QVYQLGGICKLVDLLRSPNQNVQQAAAGAL-RNLVFRSTTNKLETRRQNGIREAVSLLRR 97
Query: 268 INSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVL----------------FECRKN 311
+ E + TG+L +L E + + L +
Sbjct: 98 TGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155
Query: 312 DIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVA 371
D E + G L NLS ++ M + N ++ +
Sbjct: 156 DPEVFFNATGCLRNLSSAD--AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 372 NTEIEAAVLKSVQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPV 431
+ L + + L+ + S SN + N N+ L
Sbjct: 214 VLHNLSYRLDAEVPTRYRQ---LEYNARNAYTEKSSTGCFSNKSD-KMMNNNYDCPLPEE 269
Query: 432 LSS--------------------------KREEARNLAAFHFCMEAGIKKQQGKTDIFKE 465
++ EA A + G+ I +
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329
Query: 466 IGAIEPLKKVASCPNAVASKYAAQTLR 492
+ + ++ N+ + A L
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLS 356
Score = 31.3 bits (70), Expect = 1.7
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 292 CSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIKRKVPVWLFPL- 350
+ GL + + + + +R A L+N+S + M + P L
Sbjct: 324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFPEVTRLLT 381
Query: 351 ----AFHNDDNIKYYACLAIAVLVAN 372
N ++I AC + L+A+
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMAS 407
Score = 30.6 bits (68), Expect = 2.9
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 425 LQKLVPVLSSKREEARNLAAF---HFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNA 481
+ K V LSS+ E+ + + A+ H C + + K +++ G I L + PN
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTC----FQDESAKQQVYQL-GGICKLVDLLRSPNQ 58
Query: 482 VASKYAAQTLRLI 494
+ AA LR +
Sbjct: 59 NVQQAAAGALRNL 71
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein;
2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Length = 149
Score = 41.8 bits (98), Expect = 2e-04
Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 20/143 (13%)
Query: 655 DKNLDVFISYRRSNGSQLASLLKVHLE--LRQFKVFIDVERLEAGK-FDNNLLQSIKQAR 711
+ D F+SY + + +L+ LE FK+ + GK +N++ SI+++
Sbjct: 3 NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSH 62
Query: 712 NFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-----SGCNIIPI-LDNFAWPDPEQ 765
+ VL+ + +SE W E+ + + I I L+ Q
Sbjct: 63 KTVFVLSENFV-------KSE---WXKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112
Query: 766 LPADMRAICKFNGV-RWIHDYQD 787
+R I W D
Sbjct: 113 RFXKLRKIMNTKTYLEWPMDEAQ 135
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A
{Paracoccus denitrificans PD1222}
Length = 154
Score = 40.4 bits (95), Expect = 7e-04
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 15/101 (14%)
Query: 659 DVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNFLLVL 717
D+FIS+ + + L L +V+ D L G ++ + + +R ++VL
Sbjct: 22 DIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVL 81
Query: 718 TPKALDRCMEDNESECKDWVHREIVAAL----QSGCNIIPI 754
+ K+W +E+ I+PI
Sbjct: 82 STHFFK----------KEWPQKELDGLFQLESSGRSRILPI 112
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 41.1 bits (96), Expect = 7e-04
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 16/167 (9%)
Query: 281 LEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAMIK 340
++H V L G+ +L + + + R GAL NL + +N+ + +
Sbjct: 34 IQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV-FEDNDNKLEVAE 92
Query: 341 RKVPVWLFPLAFHNDD-NIKYYACLAIAVLVANTE-----IEAAVLKSVQEAAVLKSGTL 394
L + D K + L +N + I A+L + + SG
Sbjct: 93 LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWP 152
Query: 395 DLVEPFVMSHSPSEF------AKSNLAHAHGQNRNWLQK---LVPVL 432
+ P + N++ A R +++ L+ L
Sbjct: 153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSL 199
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR,
IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo
sapiens}
Length = 159
Score = 38.2 bits (88), Expect = 0.004
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 37/154 (24%)
Query: 648 KEYEDNPDKNLDVFISYRRSNGSQLAS-----------LLKVHLE-LRQFKVFIDVERLE 695
K+Y D ++SY + + Q +L LE +K+FI L
Sbjct: 1 KDY--------DAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLI 52
Query: 696 AGK-FDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-----SGC 749
+ ++ + + Q++ ++V+TP N + W E+ L+
Sbjct: 53 PTGTYIEDVARCVDQSKRLIIVMTP---------NYVVRRGWSIFELETRLRNMLVTGEI 103
Query: 750 NIIPI-LDNFAWPDPEQLPADMRAICKFNGV-RW 781
+I I Q ++ K V +W
Sbjct: 104 KVILIECSELRGIMNYQEVEALKHTIKLLTVIKW 137
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA
binding protein; 1.60A {Saccharomyces cerevisiae} PDB:
2f8k_A 2fe9_A
Length = 88
Score = 36.4 bits (84), Expect = 0.004
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
+++ W++ + +Y++ S L+ L++E L + G+ RR+ + +
Sbjct: 19 KNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVI 75
Query: 572 K 572
Sbjct: 76 D 76
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Length = 204
Score = 38.0 bits (89), Expect = 0.006
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 653 NPDKNLDVFISYR----RSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSI 707
P +VF+S+R R L L + F D + L GK NLL++I
Sbjct: 31 FPSVEYEVFLSFRGPDTREQ---FTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87
Query: 708 KQARNFLLVL 717
Q++ ++ ++
Sbjct: 88 DQSKIYVPII 97
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein;
2.00A {Arabidopsis thaliana}
Length = 176
Score = 37.5 bits (88), Expect = 0.007
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 659 DVFISYR----RSNGSQLASLLKVHLELRQFKVFIDVERLEAGK-FDNNLLQSIKQARNF 713
DVF+S+R R N S L L R + F D + LE G+ F L I+ +R
Sbjct: 10 DVFLSFRGHDTRHN---FISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 714 LLVL 717
++V+
Sbjct: 67 VVVV 70
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR
{Saccharomyces cerevisiae}
Length = 119
Score = 36.6 bits (84), Expect = 0.008
Identities = 9/61 (14%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
+++ W++ + +Y++ L+ L++E L + G+ RR+ + +
Sbjct: 50 KNIPMWLKSLRLHKYSDALSG--TPWIELIYLDDETL-EKKGVLALGARRKLLKAFGIVI 106
Query: 572 K 572
Sbjct: 107 D 107
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR
{Saccharomyces cerevisiae} PDB: 2ese_A
Length = 101
Score = 35.7 bits (82), Expect = 0.010
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 512 EDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
+++ W++ + +Y++ S L+ L++E L G+ RR+ + +
Sbjct: 32 KNIPMWLKSLRLHKYSDAL--SGTPWIELIYLDDETLE-KKGVLALGARRKLLKAFGIVI 88
Query: 572 K 572
Sbjct: 89 D 89
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein
interaction domain, growth arrest, signaling protein;
NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB:
1z1v_A
Length = 85
Score = 34.7 bits (79), Expect = 0.015
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 500 HKLSQQVPLWSTEDVREWVRQ-IGFAEY---ANNFVESRVDGDLLLQLNEEHLRDDIGIH 555
H ++ WS +DV W + E E+ + GDLL +L + + D+
Sbjct: 3 HMNNEDFSQWSVDDVITWCISTLEVEETDPLCQRLRENDIVGDLLPELCLQDCQ-DLCDG 61
Query: 556 NGIQRRRFERELQNLKK 572
+ + +F+ + ++
Sbjct: 62 DLNKAIKFKILINKMRD 78
>2js7_A Myeloid differentiation primary response protein MYD88;
MYD88_human, TIR domain, TOLL like receptor adaptor
domain, innate immune signaling; NMR {Homo sapiens} PDB:
2z5v_A
Length = 160
Score = 35.9 bits (83), Expect = 0.023
Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 28/144 (19%)
Query: 648 KEYEDNPDKNLDVFISYRRSNGSQLASLLKVHLE--LRQFKVFIDVERLEAGK-FDNNLL 704
+ + + D FI Y S+ Q + LE + K+ + + G +
Sbjct: 7 DDPLGHMPERFDAFICYCPSD-IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIAS 65
Query: 705 QSI-KQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQ-----SGCNIIPILDNF 758
+ I K+ R ++V++ L +S+ + AL +IPI
Sbjct: 66 ELIEKRCRRMVVVVSDDYL-------QSK---ECDFQTKFALSLSPGAHQKRLIPIK--- 112
Query: 759 AWPDPEQLPADMRAICKFNGV-RW 781
+ + + +I +F V +
Sbjct: 113 ----YKAMKKEFPSILRFITVCDY 132
>2jv3_A ETS1 proto-oncogene; ETS-1 pointed (PNT) domain, MAP kinase
phosphorylation site, alpha-helical bundle,
transcription factor, DNA-binding, nucleus; NMR {Mus
musculus} PDB: 2kmd_A*
Length = 110
Score = 33.4 bits (76), Expect = 0.075
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 495 GETVPHKLSQQVPLWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRDDI 552
E + + W+ VR+WV F+ +F + + G L L +E +
Sbjct: 30 KEQQRLGIPKDPRQWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELA 89
Query: 553 GIHNGIQRRRFERELQNLKKM 573
G L+ L+K
Sbjct: 90 PDFVG---DILWEHLEILQKE 107
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin
adaptor, endocytosis, SAM domain, yeast, actin-BIND
membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Length = 72
Score = 31.7 bits (72), Expect = 0.14
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 524 AEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRR 561
Y NF ++ D++ +N LR +G+ G R
Sbjct: 20 QRYTINFDREQLTEDMMPDINNSMLR-TLGLREGDIVR 56
>2e8p_A ELF3 protein; cell-free protein synthesis, protein regulation,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 31.9 bits (72), Expect = 0.19
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVESRV-------DGDLLLQLNEEHLRD 550
WS V +W+ + N + S + DG L E LR
Sbjct: 26 FWSKTQVLDWIS---YQVEKNKYDASAIDFSRCDMDGATLCNCALEELRL 72
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A
{Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Length = 173
Score = 33.2 bits (75), Expect = 0.21
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLKK 572
+ W++ + +Y F + +L + E+ L +G+ G + + LK+
Sbjct: 9 GIGLWLKSLRLHKYIELFKNMTYEE--MLLITEDFL-QSVGVTKG-ASHKLALCIDKLKE 64
Query: 573 MAD 575
A+
Sbjct: 65 RAN 67
>2dkx_A SAM pointed domain-containing ETS transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 31.9 bits (72), Expect = 0.24
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 501 KLSQQVPLWSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGI 558
++ WS +V++W+ + + G L ++EE R + +
Sbjct: 19 NITADPMDWSPSNVQKWLLWTEHQYRLPPMGKAFQELAGKELCAMSEEQFRQRSPLGGDV 78
Query: 559 QRRRFERELQNLKKMADYSS 578
L K A S
Sbjct: 79 ----LHAHLDIWKSAASGPS 94
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.34
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 608 DKDSIKALSEEQ--LICECGIHNSIHRLRIME-AIHEIEREWNKEYEDNPDKN 657
+ +SI+ EEQ + E + + E A ++E EWN+ + +KN
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE-EWNQRQSEQVEKN 134
>1x66_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 98
Score = 31.1 bits (70), Expect = 0.39
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVE----SRVDGDLLLQLNEEHLRDDIGIHNGIQRRRF 563
LW+ E VR+W+ EY+ ++ +DG L ++N+E ++N
Sbjct: 26 LWTQEHVRQWLEWAI-KEYSLMEIDTSFFQNMDGKELCKMNKEDFLRATTLYNT---EVL 81
Query: 564 ERELQNLKKMADYSS 578
L L++ + S
Sbjct: 82 LSHLSYLRESSSGPS 96
>1sxe_A Transcriptional regulator ERG; alpha helical, signaling protein;
NMR {Homo sapiens} SCOP: a.60.1.1
Length = 97
Score = 31.1 bits (70), Expect = 0.40
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 8/84 (9%)
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESR----VDGDLLLQLNEEHLRDD 551
+ LWST+ VR+W+ EY V +DG L ++ ++ +
Sbjct: 17 NERRVIVPADPTLWSTDHVRQWLEWA-VKEYGLPDVNILLFQNIDGKELCKMTKDDFQRL 75
Query: 552 IGIHNGIQRRRFERELQNLKKMAD 575
+N L L++
Sbjct: 76 TPSYNA---DILLSHLHYLRETPL 96
>2qar_B Telsam domain; polymer, crystallization modules, sterIle alpha
motif, hydro regulator; 2.40A {Escherichia coli}
Length = 93
Score = 30.7 bits (69), Expect = 0.43
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 498 VPHKLSQQVPLWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRDDIGIH 555
+P L Q WS +DV +W++ F+ + ++G LL L +E R
Sbjct: 4 LPAHLRLQPIYWSRDDVAQWLKWAENEFSLSPIDSNTFEMNGKALLLLTKEDFRYRSPHS 63
Query: 556 NGIQRRRFERELQNLKKMADYSSKD 580
+ LQ++ K D ++
Sbjct: 64 GDV----LYELLQHILKQRDLEAEA 84
>1sv0_C Modulator of the activity of ETS CG15085-PA; alpha-helix, 3(10)
helix, transcription; 2.07A {Drosophila melanogaster}
SCOP: a.60.1.1
Length = 82
Score = 29.8 bits (67), Expect = 0.76
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 508 LWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRD 550
W+ DV +W+ + G A + ++G L ++ +
Sbjct: 13 DWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLC 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.83
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 19/42 (45%)
Query: 888 KSQQLRRKGPGNMPVRAHSLEG---LIEP--APPR--NSTLE 922
+ Q L++ L+ L AP +T+E
Sbjct: 18 EKQALKK------------LQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 4.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 39 EKHSAQSAQSNIKFTTKGMTKSLMTSAS 66
EK + + Q+++K +L A+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKAT 45
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 111
Score = 30.2 bits (68), Expect = 0.98
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 636 MEAIHEIEREWNKEY-EDNPDKNLDVFISYR 665
I E E++ E+ E K + ++ R
Sbjct: 24 RNIIQEEEKQAIPEFFEGRQAKTPERYLKIR 54
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A
{Saccharomyces cerevisiae} SCOP: a.4.1.18
Length = 104
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 636 MEAIHEIEREWNKEY--EDNPDKNLDVFISYR 665
+E IH IE + E+ P K +V++ YR
Sbjct: 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYR 53
>1sv0_A ETS DNA-binding protein pokkuri; alpha-helix, 3(10) helix,
transcription; 2.07A {Drosophila melanogaster} SCOP:
a.60.1.1 PDB: 1sv4_A
Length = 85
Score = 29.5 bits (66), Expect = 1.3
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESR---VDGDLLLQLNEEHLRDDIGI 554
+P L LWS EDV ++R E+ ++ ++G L L
Sbjct: 2 LPPSLPSDPRLWSREDVLVFLRFC-VREFDLPKLDFDLFQMNGKRLCLLTRADFGHRCPG 60
Query: 555 HNGIQRRRFERELQNLKKMA 574
+ LQ L +
Sbjct: 61 AGDV----LHNVLQMLIIES 76
>1ji7_A ETS-related protein TEL1; helical polymer, transcription; 1.45A
{Homo sapiens} SCOP: a.60.1.1 PDB: 2qar_A 2qb0_A 1lky_A
1lky_B 2qb1_A
Length = 89
Score = 29.1 bits (65), Expect = 1.6
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESR---VDGDLLLQLNEEHLRDDIGI 554
+P L Q WS +DV +W++ E++ ++S ++G LL L +E R
Sbjct: 4 LPAHLRLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH 62
Query: 555 HNGIQRRRFERELQNLKKMADYSSKD 580
LQ++ K D+
Sbjct: 63 SGDE----LYELLQHILKQRDHHHHH 84
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 31.3 bits (70), Expect = 1.7
Identities = 27/187 (14%), Positives = 53/187 (28%), Gaps = 23/187 (12%)
Query: 209 LRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNI 268
L N + V K + +E + EN + R N+
Sbjct: 583 LTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDEN---------VPLQRSTLELISNM 633
Query: 269 NSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSL 328
S I F + ++ + +D+E+ R A AN++
Sbjct: 634 MSHPL-----TIAAKFFNLENPQSLRN-----FNILVKLLQLSDVESQRAVAAIFANIAT 683
Query: 329 YGGAENQEAMIKRKVPVWLFPLAFH--NDDNIKYYACLAIAVLV--ANTEIEAAVLKSVQ 384
+E + K+++ + +D ++ + L V +Q
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743
Query: 385 EAAVLKS 391
E LK
Sbjct: 744 ENQKLKD 750
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 30.6 bits (68), Expect = 2.7
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 864 RRRKSSS------PSPYLPSHTSWRPPTSPKSQQLRRKGPGNMPVRAHSLEGLIEPAPPR 917
RRR S S P+ Y+ +PP P S PG+ A A P
Sbjct: 6 RRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPA 65
Query: 918 NSTLESGQVNKSVS 931
+ S S
Sbjct: 66 APSPGSSGGGGFFS 79
>1sxd_A GA repeat binding protein, alpha; alpha helical, transcription,
signaling protein; NMR {Mus musculus} SCOP: a.60.1.1
Length = 91
Score = 28.3 bits (63), Expect = 2.9
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRD 550
E + WST+ V WV + F+ + + G L LN+E
Sbjct: 13 EQERLGIPYDPIHWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFFQ 69
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP
replication, DNA-binding, hydrolase, nucleotide-B SOS
response; HET: DNA; 1.80A {Escherichia coli} PDB:
2is6_A* 2is2_A* 2is1_A* 2is4_A*
Length = 647
Score = 30.5 bits (70), Expect = 3.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 22/59 (37%)
Query: 768 ADMRAICKFNGVRWIHDYQDACVDKLERFMRGELNSYRSALSVKSDPPSTPNILNKVNA 826
A + I +F +D+ A +LE+ N YRS T NIL+ NA
Sbjct: 259 AQVENIQRFL-----NDFPGAETIRLEQ------N-YRS----------TSNILSAANA 295
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase
regulator; 2.56A {Escherichia coli}
Length = 241
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 4/101 (3%)
Query: 498 VPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVES---RVDGDLLLQLNEEHLRDDIGI 554
+P L Q WS +DV +W++ E++ ++S ++G LL L +E R
Sbjct: 4 LPAHLRLQPIYWSRDDVAQWLKWA-ENEFSLRPIDSNTFEMNGKALLLLTKEDFRYRSPH 62
Query: 555 HNGIQRRRFERELQNLKKMADYSSKDVTNLNNFLLNLGQEF 595
+ + L+ + L + + +
Sbjct: 63 SGDVLYELLQHILKQAGPNIFEMLRIDEGLRLKIYKDTEGY 103
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP-
binding, DNA-binding; 2.50A {Geobacillus
stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C*
2pjr_B*
Length = 724
Score = 30.2 bits (69), Expect = 3.7
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 22/59 (37%)
Query: 768 ADMRAICKFNGVRWIHDYQDACVDKLERFMRGELNSYRSALSVKSDPPSTPNILNKVNA 826
AD++ I F DY +A V LE+ N YRS T IL N
Sbjct: 262 ADIQNILSFE-----RDYPNAKVILLEQ------N-YRS----------TKRILQAANE 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 29.6 bits (67), Expect = 3.9
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 415 AHAHGQNRN--WLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPL 472
+H H + + ++ + L R AA+ GK + A+EPL
Sbjct: 4 SHHHHHHTDPEKVEMYIKNLQDDSYYVRRAAAYAL----------GK---IGDERAVEPL 50
Query: 473 KKVASCPNAVASKYAAQTLRLIG 495
K +A + AA L IG
Sbjct: 51 IKALKDEDAWVRRAAADALGQIG 73
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 29.9 bits (68), Expect = 4.3
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 826 APTYQRMHSNDSSKGSNGDTMEYTFYSMLIRYLLILCPRRRKSSSPSPYLPSHTSWRPPT 885
AP Y N + S +T+ +F IL P + + + RP T
Sbjct: 269 APNYCGEFDNAGAMMSVDETLMCSF--------QILKPADKNKGKYGQFSGLNPGGRPIT 320
Query: 886 SPKSQQLRRK 895
P++ +K
Sbjct: 321 PPRNSAKAKK 330
>2ytu_A Friend leukemia integration 1 transcription factor; cell-free
protein synthesis, protein regulation, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 128
Score = 28.6 bits (63), Expect = 5.1
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 496 ETVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVES----RVDGDLLLQLNEEHLRDD 551
+ LW+ E VR+W+ EY+ +++ +DG L ++N+E
Sbjct: 28 NERRVIVPADPTLWTQEHVRQWLEWA-IKEYSLMEIDTSFFQNMDGKELCKMNKEDFLRA 86
Query: 552 IGIHNGIQRRRFERELQNLKKMA 574
++N L L++ +
Sbjct: 87 TTLYNT---EVLLSHLSYLRESS 106
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein
regulation, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
Length = 99
Score = 27.7 bits (61), Expect = 5.7
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLR 549
++VR W+ F+ + + G L LN+E L+
Sbjct: 25 GPDEVRAWLEAKAFSPRIVENLGI-LTGPQLFSLNKEELK 63
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis,
protein regulation, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 90
Score = 27.4 bits (60), Expect = 6.5
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 505 QVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLR 549
+V W + + ++ +++ + + + +DG L L E ++
Sbjct: 18 EVLGWDPDSLADYFKKLNYKDCEKAVKKYHIDGARFLNLTENDIQ 62
>2g0t_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Length = 350
Score = 29.3 bits (65), Expect = 6.9
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 692 ERLEAGKFDNNLLQSIKQARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNI 751
+ ++ ++D ++ S+++A+ + L + + ++ + + AL G ++
Sbjct: 67 DFVKPVRYDVPVVSSVEKAKEM----GAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDV 122
Query: 752 IPILDNFAWPDPEQLPADMRAICKFNGVRWIHD 784
I L E L NG I D
Sbjct: 123 ISGLHFKISQQTEFLKIAHE-----NGT-RIID 149
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 28.8 bits (64), Expect = 8.8
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 56/221 (25%)
Query: 150 MKEVF-ILRSFILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNT 208
MK +L + ++DQ++R A L+ + DL +
Sbjct: 30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGA-LELLADLCEN------------MDNAAD 76
Query: 209 LRNCGGMDLLISNCVE-KDLDLQFSSARLLEQCLTT--ENRDHVVENGL----------- 254
GM LL+ +E L++ +A+L+ C ++ V+ G
Sbjct: 77 FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD 136
Query: 255 -DKVVRVACV------CTKNINSVEHSRVGTGI---------------------LEHLFK 286
VRV + + + G L++L
Sbjct: 137 ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV 196
Query: 287 HSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLS 327
+ +G + ++ R H GAL +L
Sbjct: 197 GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLV 237
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 28.6 bits (64), Expect = 9.8
Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 721 ALDRCMEDNESECK-----DWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICK 775
AL R ME + ++V R I+ L S C+ F D +R I +
Sbjct: 152 ALRRTMETYSGVTRFCLICNYVTR-IIDPLASQCSKF----RFKALDASNAIDRLRFISE 206
Query: 776 FNGVRWIHDYQDACVDKLERFMRGELNSYRSALSVKSDPPSTPNI 820
V+ + +D +R + +SA NI
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNI 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.377
Gapped
Lambda K H
0.267 0.0739 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,282,504
Number of extensions: 860246
Number of successful extensions: 1915
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1743
Number of HSP's successfully gapped: 187
Length of query: 979
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 876
Effective length of database: 3,825,930
Effective search space: 3351514680
Effective search space used: 3351514680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.6 bits)