RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4858
(979 letters)
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3
(Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Length = 64
Score = 68.0 bits (166), Expect = 5e-15
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
+ LWS DV +W+ I E+ + F + ++G L L +E ++G+ R ER
Sbjct: 1 LQLWSKFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHRENIER 59
Query: 566 ELQNL 570
L+ L
Sbjct: 60 ALRQL 64
Score = 36.4 bits (84), Expect = 0.001
Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 573 MADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHR 632
+ +S DV + +L ++ + + ++ + AL++E + E G+ HR
Sbjct: 1 LQLWSKFDVGD---WLESIH--LGEHRDRFEDHEIEGAHLPALTKEDFV-ELGVTRVGHR 54
Query: 633 LRIMEAIHEI 642
I A+ ++
Sbjct: 55 ENIERALRQL 64
>d1kw4a_ a.60.1.2 (A:) Polyhomeotic {Drosophila melanogaster [TaxId:
7227]}
Length = 70
Score = 64.1 bits (156), Expect = 2e-13
Identities = 19/67 (28%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 506 VPLWSTEDVREWVRQI-GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFE 564
+ WS +DV ++R++ G +Y ++F++ +DG LL+L E+HL + +G+ G +
Sbjct: 5 ISSWSVDDVSNFIRELPGCQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKLG-PALKIV 63
Query: 565 RELQNLK 571
+++++K
Sbjct: 64 AKVESIK 70
Score = 27.1 bits (60), Expect = 2.2
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 569 NLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHN 628
+ ++ +S DV+N F+ L Y + +D ++ L E+ L+ G+
Sbjct: 1 DRPPISSWSVDDVSN---FIRELPG-CQDYVDDFIQQEIDGQALLRLKEKHLVNAMGMKL 56
Query: 629 SIHRLRIMEAIHEI 642
L+I+ + I
Sbjct: 57 G-PALKIVAKVESI 69
>d2d8ca1 a.60.1.2 (A:7-91) Sphingomyelin synthase 1, SMS1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 63.5 bits (154), Expect = 4e-13
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 497 TVPHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRD-DIGIH 555
+ + ++V WS + V +W+ + EY G L+ L +E + +
Sbjct: 2 MLSARTMKEVVYWSPKKVADWLLENAMPEYCEPL--EHFTGQDLINLTQEDFKKPPLYRV 59
Query: 556 NGIQRRRFERELQNLKK 572
+ +R ++ LK
Sbjct: 60 SSDNGQRLLDMIETLKM 76
Score = 28.8 bits (64), Expect = 0.82
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 568 QNLKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQL-ICECGI 626
+ +K++ +S K V + +LL ++ Y + L++E
Sbjct: 6 RTMKEVVYWSPKKVAD---WLLEN----AMPEYCEPLEHFTGQDLINLTQEDFKKPPLYR 58
Query: 627 HNSIHRLRIMEAIHEIEREWNKEYEDN 653
+S + R+++ I ++ E + E N
Sbjct: 59 VSSDNGQRLLDMIETLKMEHHMEAHKN 85
>d1pk3a1 a.60.1.2 (A:17-79) Polycomb protein Scm {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 63
Score = 60.7 bits (147), Expect = 2e-12
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 509 WSTEDVREWVRQI--GFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFERE 566
W+ E+V +++ A + + F + +DG LL+LN E + +G+ G +
Sbjct: 1 WTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLG-PALKICNL 59
Query: 567 LQNL 570
+ +
Sbjct: 60 VNKV 63
Score = 35.3 bits (81), Expect = 0.002
Identities = 7/66 (10%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 577 SSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIM 636
+ ++V ++ + +++ +D ++ L+ E ++ G+ L+I
Sbjct: 2 TIEEVIQ---YIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLG-PALKIC 57
Query: 637 EAIHEI 642
++++
Sbjct: 58 NLVNKV 63
>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 74
Score = 57.7 bits (139), Expect = 4e-11
Identities = 9/65 (13%), Positives = 23/65 (35%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFEREL 567
S V EW+ I +Y +F + ++ +G+ +++ +
Sbjct: 3 YTSFNTVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKKILNSI 62
Query: 568 QNLKK 572
Q ++
Sbjct: 63 QVMRA 67
Score = 30.7 bits (69), Expect = 0.13
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 575 DYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLR 634
DY+S ++ +L + Y S NAG + + + I G+ + H+ +
Sbjct: 2 DYTS--FNTVDEWLEAIK--MGQYKESFANAGFTSFDVVSQMMMEDILRVGVTLAGHQKK 57
Query: 635 IMEAIHEI 642
I+ +I +
Sbjct: 58 ILNSIQVM 65
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 56.6 bits (136), Expect = 1e-10
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 507 PLWSTEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFER 565
+ + ++E++ +I EY + + + + D L + E HL ++ I + R R
Sbjct: 8 RRENHQTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLI-ELNIADPEDRARLLS 66
Query: 566 ELQNLKK 572
++L
Sbjct: 67 AAESLLS 73
Score = 33.4 bits (76), Expect = 0.012
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 574 ADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRL 633
+ ++ + FL + YT ++L G + +E + E I + R
Sbjct: 5 SSGRRENHQTIQEFLERIH--LQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRA 62
Query: 634 RIMEAIHEI 642
R++ A +
Sbjct: 63 RLLSAAESL 71
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 54.9 bits (132), Expect = 3e-10
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
+ V +W++ I Y +NF + + ++ ++++ L IGI + + +Q
Sbjct: 3 AVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLA-RIGITAITHQNKILSSVQ 61
Query: 569 NLKK 572
++
Sbjct: 62 AMRT 65
Score = 36.0 bits (83), Expect = 0.001
Identities = 10/72 (13%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 576 YSSKDVTNLNNFL--LNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRL 633
+S+ V ++ ++L + + + Y + AG + + GI H+
Sbjct: 1 FSA--VVSVGDWLQAIKMDR----YKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQN 54
Query: 634 RIMEAIHEIERE 645
+I+ ++ + +
Sbjct: 55 KILSSVQAMRTQ 66
>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 78
Score = 53.9 bits (129), Expect = 8e-10
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 506 VPLWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
V W+ V W+R + + F + ++ G LLQL + L + + + + +
Sbjct: 4 VETWTPGKVATWLRGLDDSLQDYPFEDWQLPGKNLLQLCPQSL-EALAVRSLGHQELILG 62
Query: 566 ELQNLKKM 573
++ L+ +
Sbjct: 63 GVEQLQAL 70
Score = 32.7 bits (74), Expect = 0.028
Identities = 9/73 (12%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 570 LKKMADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNS 629
++ + ++ V +L G + S+ Y + + ++ L + L + +
Sbjct: 1 MEPVETWTPGKVAT---WLR--GLDDSLQDYPFEDWQLPGKNLLQLCPQSLE-ALAVRSL 54
Query: 630 IHRLRIMEAIHEI 642
H+ I+ + ++
Sbjct: 55 GHQELILGGVEQL 67
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 53.8 bits (129), Expect = 9e-10
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 510 STEDVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQ 568
S V +W+ I Y ++F ++L++N + + +GI +++ +Q
Sbjct: 6 SGLTVGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDV-RALGITLMGHQKKILGSIQ 64
Query: 569 NLKK 572
++
Sbjct: 65 TMRA 68
Score = 34.5 bits (79), Expect = 0.006
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 589 LNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEIEREWNK 648
+ +G+ Y G + Q + GI H+ +I+ +I + +
Sbjct: 17 IRMGR----YRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTS 72
Query: 649 EYEDNP 654
P
Sbjct: 73 TQGSGP 78
>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila
melanogaster [TaxId: 7227]}
Length = 62
Score = 50.7 bits (121), Expect = 6e-09
Identities = 10/65 (15%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 508 LWSTEDVREWVRQIGFAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFEREL 567
+ + W++ + +Y F + + +L + E+ L +G+ G + +
Sbjct: 2 MVGMSGIGLWLKSLRLHKYIELFKN--MTYEEMLLITEDFL-QSVGVTKG-ASHKLALCI 57
Query: 568 QNLKK 572
LK+
Sbjct: 58 DKLKE 62
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo
sapiens) [TaxId: 9606]}
Length = 78
Score = 47.2 bits (112), Expect = 2e-07
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 513 DVREWVRQIGFAEYANNFVESRVDG-DLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
D+++++ I +Y +F ES +N+ L+ IGI RRR ++LQ +
Sbjct: 10 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQ-KIGISPTGHRRRILKQLQIIL 68
Query: 572 K 572
Sbjct: 69 S 69
Score = 34.1 bits (78), Expect = 0.008
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 573 MADYSSKDVTNLNNFLLNLGQEFSIYTYSMLNAG-VDKDSIKALSEEQLICECGIHNSIH 631
M+ S +V ++ +FL+++ Y +G A+++ L + GI + H
Sbjct: 1 MSSVSEVNV-DIKDFLMSIN--LEQYLLHFHESGFTTVKDCAAINDSLL-QKIGISPTGH 56
Query: 632 RLRIMEAIHEI 642
R RI++ + I
Sbjct: 57 RRRILKQLQII 67
>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 161
Score = 49.3 bits (117), Expect = 3e-07
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 651 EDNPDKNLDVFISYRRSNGSQLASLLKVHLELRQFKVFIDVERLEAGKFD-NNLLQSIKQ 709
E + FISY + + + L +LE ++ + GK N++ I++
Sbjct: 6 ELQRNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEK 65
Query: 710 ARNFLLVLTPKALDRCMEDNESECKDWVHREIVAALQSGCNII--PILDNFAWPDPEQLP 767
+ + VL+P + E E H S I+ PI +L
Sbjct: 66 SYKSIFVLSPNFVQS--EWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLK 123
Query: 768 ADMRAICKFNGVRWIHD--YQDACVDKLERFMRGELNS 803
+ M + W + + L + +L
Sbjct: 124 SLMARRTY---LEWPKEKSKRGLFWANLRAAINIKLTE 158
>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 48.2 bits (114), Expect = 4e-07
Identities = 27/156 (17%), Positives = 55/156 (35%), Gaps = 22/156 (14%)
Query: 655 DKNLDVFISYRRSNGSQLASLLKVHLE--LRQFKVFIDVERLEAGK-FDNNLLQSIKQAR 711
+ D F+SY + + +L+ LE FK+ + GK +N++ SI+++
Sbjct: 3 NICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSH 62
Query: 712 NFLLVLTPKALDRCMEDNESECKDWVHREIVAAL-----QSGCNIIPI-LDNFAWPDPEQ 765
+ VL+ + +W E+ + ++ I I L+ Q
Sbjct: 63 KTVFVLSENFV----------KSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112
Query: 766 LPADMRAICKFNGV-RWIHD--YQDACVDKLERFMR 798
+R I W D ++ L ++
Sbjct: 113 RFCKLRKIMNTKTYLEWPMDEAQREGFWVNLRAAIK 148
>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 42.3 bits (99), Expect = 6e-06
Identities = 10/60 (16%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 513 DVREWVRQIGFAEYANNFVESR-VDGDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNLK 571
V+ ++ +IG +Y ++F++ V + + L+++ +G++ R + R+ ++ +
Sbjct: 2 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDI-LIALGVNKIGDRLKILRKSKSFQ 60
Score = 30.0 bits (67), Expect = 0.17
Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 587 FLLNLGQEFSIYTYSMLNAGVDKDSIKALSEEQLICECGIHNSIHRLRIMEAIHEI 642
FL +G + Y S + + + ++ ++ G++ RL+I+
Sbjct: 6 FLEEIG--CTQYLDSFIQCNLVTEEEIKYLDKDILIALGVNKIGDRLKILRKSKSF 59
>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 37.5 bits (87), Expect = 3e-04
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
Query: 514 VREWVRQIGFAEYANNFVESRVD-GDLLLQLNEEHLRDDIGIHNGIQRRRFERELQNL 570
+ ++ +G F + L L E L + I R R LQ+L
Sbjct: 2 LVSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDL-GALKIPEQ-YRMTIWRGLQDL 57
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 38.7 bits (88), Expect = 0.003
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 2/113 (1%)
Query: 277 GTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQE 336
G ++H E V LGG+ ++ R + + AGAL NL + N+
Sbjct: 22 GAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV-FRSTTNKL 80
Query: 337 AMIKRKVPVWLFPLAFH-NDDNIKYYACLAIAVLVANTEIEAAVLKSVQEAAV 388
++ L + I+ + L + E++ ++
Sbjct: 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLA 133
Score = 36.7 bits (83), Expect = 0.014
Identities = 24/221 (10%), Positives = 61/221 (27%), Gaps = 14/221 (6%)
Query: 170 SSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLLISNCVEKDLDL 229
+ ++ +K + +M + P E L + + ++ + D
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299
Query: 230 QFSSARLLEQCLTTENRDHVVENGLDKVVRV----ACVCTKNINSVEHSRVGTGILEHLF 285
+ Q LT ++ + + R G +L ++
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359
Query: 286 KHSEGTCSDVIGLGGLDTVL------FECRKNDIETLRHCAGALANLSLYGGAENQEAMI 339
+H V+G V N + L + NL + +
Sbjct: 360 RHPL--LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA-SQPQLAKQYF 416
Query: 340 KRKVPVWLFPLAFHND-DNIKYYACLAIAVLVANTEIEAAV 379
+ + L + A L ++ + ++ E++ +
Sbjct: 417 SSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457
Score = 31.0 bits (68), Expect = 0.84
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 425 LQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVAS 484
+ K V LSS+ E+ + + A++ + + ++G I L + PN
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTC--FQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 485 KYAAQTLRLI 494
+ AA LR +
Sbjct: 62 QAAAGALRNL 71
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 35.6 bits (80), Expect = 0.034
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 3/103 (2%)
Query: 267 NINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANL 326
+ E TG L L + + GL + + R AG L L
Sbjct: 429 GVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487
Query: 327 SLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVL 369
+ E EA+ L L ++ + YA + +
Sbjct: 488 AQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 34.1 bits (76), Expect = 0.091
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
Query: 275 RVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRK-NDIETLRHCAGALANLSLYGGAE 333
++ L K + + + ++ + ND+ET R AG L NLS + E
Sbjct: 35 NKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--RE 92
Query: 334 NQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIA 367
A+ K L + D++ +YA +
Sbjct: 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Score = 31.0 bits (68), Expect = 0.71
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 410 AKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAI 469
A+ + N + V +L S E + +AA C + + + + + GA
Sbjct: 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLC---ELAQDKEAAEAIEAEGAT 503
Query: 470 EPLKKVASCPNAVASKYAAQTLRLI 494
PL ++ N + YAA L +
Sbjct: 504 APLTELLHSRNEGVATYAAAVLFRM 528
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 29.0 bits (65), Expect = 0.52
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 764 EQLPADMRAICKFNG-----VRWIHDYQDACV 790
E L ++R +C F+ ++WI + D C
Sbjct: 24 EGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT 55
>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
maritima [TaxId: 2336]}
Length = 338
Score = 30.6 bits (69), Expect = 0.88
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 734 KDWVHREIVAALQSGCNIIPILDNFAWPDPEQLPADMRAICKFNGVRWIHD 784
+ + AL G ++I L E L NG I D
Sbjct: 94 EQIAT-LVKKALSLGMDVISGLHFKISQQTEFLKIAHE-----NG-TRIID 137
>d2fq3a1 a.4.1.18 (A:311-395) Transcription regulatory protein swi3
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 85
Score = 28.6 bits (64), Expect = 0.96
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 636 MEAIHEIEREWNKEY--EDNPDKNLDVFISYR 665
+E IH IE + E+ P K +V++ YR
Sbjct: 6 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYR 37
>d1ji7a_ a.60.1.1 (A:) Etv6 transcription factor pointed domain (Tel
SAM) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 27.8 bits (62), Expect = 1.3
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 499 PHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESR---VDGDLLLQLNEEHLRD 550
P L Q WS +DV +W++ E++ ++S ++G LL L +E R
Sbjct: 5 PAHLRLQPIYWSRDDVAQWLKWAE-NEFSLRPIDSNTFEMNGKALLLLTKEDFRY 58
>d1sxea_ a.60.1.1 (A:) Transcriptional regulator ERG {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 28.3 bits (63), Expect = 1.5
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 508 LWSTEDVREWVRQIGFAEY------ANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRR 561
LWST+ VR+W+ EY F +DG L ++ ++ + +N
Sbjct: 29 LWSTDHVRQWLEWAV-KEYGLPDVNILLF--QNIDGKELCKMTKDDFQRLTPSYNA---D 82
Query: 562 RFERELQNLKKMAD 575
L L++
Sbjct: 83 ILLSHLHYLRETPL 96
>d1sv0a_ a.60.1.1 (A:) Ets DNA-binding protein pokkuri (Yan) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 77
Score = 27.4 bits (61), Expect = 1.6
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 499 PHKLSQQVPLWSTEDVREWVRQIGFAEYANNFVESR---VDGDLLLQLNEEHLRD 550
P L LWS EDV ++R E+ ++ ++G L L
Sbjct: 2 PPSLPSDPRLWSREDVLVFLRFCV-REFDLPKLDFDLFQMNGKRLCLLTRADFGH 55
>d2dw4a1 a.4.1.18 (A:172-273) Lysine-specific histone demethylase 1,
LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 27.8 bits (62), Expect = 2.1
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 637 EAIHEIEREWNKEYEDNPDKNLDVFISYR 665
+ + E + P + VF+ R
Sbjct: 15 DRMTSQEAACFPDIISGPQQTQKVFLFIR 43
>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 91
Score = 27.0 bits (60), Expect = 2.9
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 508 LWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLR 549
WST+ V WV + F+ + + G L LN+E
Sbjct: 25 HWSTDQVLHWVVWVMKEFSMTDIDLTTLNISGRELCSLNQEDFF 68
>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE,
CG15085-PA) {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 82
Score = 26.7 bits (59), Expect = 3.5
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 508 LWSTEDVREWVRQI----GFAEYANNFVESRVDGDLLLQLNEEHLRD 550
W+ DV +W+ + G A + ++G L ++ +
Sbjct: 13 DWTRADVWKWLINMAVSEGLEVTAELPQKFPMNGKALCLMSLDMYLC 59
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 28.9 bits (63), Expect = 3.7
Identities = 56/401 (13%), Positives = 124/401 (30%), Gaps = 25/401 (6%)
Query: 103 DFDDLEKLSKNSLVSQQNIDAIIAKYTGCLENIVQDSV----KLFAIKVFSMKEVFILRS 158
D + + QQ + + + + ++ + + +V I
Sbjct: 60 DESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAG 119
Query: 159 FILYLQVMQNFSSDQEKRAPAVLDKVNDLMQKAWAVPTHGHEIGYSLCNTLRNCGGMDLL 218
+ L + + + A AWA+ T+ + + + + L
Sbjct: 120 VVPRLVEFMRENQPEMLQLEA-----------AWAL-TNIASGTSAQTKVVVDADAVPLF 167
Query: 219 ISNCVEKDLDLQFSSARLLEQCLTTENRDHVVENGLDKVVRVACVCTKNINSVEHSRVGT 278
I ++++ + L + + L + N N R T
Sbjct: 168 IQLLYTGSVEVKEQAIWALGNV--AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 225
Query: 279 GILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGALANLSLYGGAENQEAM 338
L +L + + + L T+ D ETL A++ G E +A+
Sbjct: 226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY-LSDGPQEAIQAV 284
Query: 339 IKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKSVQ----EAAVLKSGTL 394
I ++P L L H ++ A A+ +V +++ V+ + +L S
Sbjct: 285 IDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 344
Query: 395 DLVEPFVMSHSPSEFAKSNLAHAHGQNRNWLQKLVPVLSSKREEARNLAAFHFC-MEAGI 453
++ + + S A + + N + LV +L + + A + +G
Sbjct: 345 NIKKEACWTISN-ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGG 403
Query: 454 KKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
++ G I+PL + + + L I
Sbjct: 404 LQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 444
>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase
{Trypanosoma brucei [TaxId: 5691]}
Length = 152
Score = 27.6 bits (61), Expect = 4.7
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 307 ECRKNDIETLRHCAGALANLSLYGGAENQEA-------MIKRKVPVWLF 348
+ R+ +I+ ++ C +A+LS + G E V F
Sbjct: 48 DIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTF 96
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 27.8 bits (60), Expect = 7.3
Identities = 51/298 (17%), Positives = 93/298 (31%), Gaps = 14/298 (4%)
Query: 206 CNTLRNCGGMDLLISNCVEKDLDLQFSSARLLEQCLTTENRDH---VVENGLDKVVRVAC 262
+ + G + IS + + L + + +D ++ +
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 263 VCTKNINSVEHSRVGTGILEHLFKHSEGTCSDVIGLGGLDTVLFECRKNDIETLRHCAGA 322
V + + + R T L +L ++ L T++ ND E L A
Sbjct: 152 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 211
Query: 323 LANLSLYGGAENQEAMIKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTEIEAAVLKS 382
++ L+ E E ++K+ V L L + I A AI +V T+ + +
Sbjct: 212 ISYLTDGPN-ERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 270
Query: 383 VQEAAVLKSGTLDLVEPFVMSHSPSEFAKSNLAHAHGQNR------NWLQKLVPVLSSKR 436
AV S L P + + SN+ + LV VLS
Sbjct: 271 AGALAVFPS---LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 327
Query: 437 EEARNLAAFHFCMEAGIKKQQGKTDIFKEIGAIEPLKKVASCPNAVASKYAAQTLRLI 494
+ + AA+ + G IEPL + S + + + I
Sbjct: 328 FKTQKEAAW-AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384
Score = 27.5 bits (59), Expect = 8.7
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 280 ILEHLFKHSEGTCSDVIGLGGLDT-VLFECRKNDIETLRHCAGALANLSLYGGAENQEAM 338
+ L + + ++I G + V F + + A AL N++ G +E +A+
Sbjct: 37 ARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA-SGTSEQTKAV 95
Query: 339 IKRKVPVWLFPLAFHNDDNIKYYACLAIAVLVANTE 374
+ L +I A A+ + +
Sbjct: 96 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 25.9 bits (57), Expect = 9.9
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 508 LWSTEDVREWVRQIG--FAEYANNFVESRVDGDLLLQLNEEHLRDDIGIHNGIQRRRFER 565
W+ VR+WV F+ +F + + G L L +E + G
Sbjct: 43 QWTETHVRDWVMWAVNEFSLKGVDFQKFCMSGAALCALGKECFLELAPDFVG---DILWE 99
Query: 566 ELQNLKK 572
L+ L+K
Sbjct: 100 HLEILQK 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.377
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,440,668
Number of extensions: 159664
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 49
Length of query: 979
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 885
Effective length of database: 1,116,976
Effective search space: 988523760
Effective search space used: 988523760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)