Query psy4859
Match_columns 102
No_of_seqs 128 out of 1070
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:29:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4859.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4859hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819|consensus 100.0 8E-29 1.7E-33 186.3 10.1 92 11-102 15-159 (321)
2 KOG0819|consensus 99.9 2.1E-26 4.5E-31 173.3 10.0 98 4-101 80-242 (321)
3 PF00191 Annexin: Annexin; In 99.9 1.1E-22 2.4E-27 121.4 9.0 66 16-100 1-66 (66)
4 smart00335 ANX Annexin repeats 99.7 1.6E-17 3.6E-22 95.3 6.4 53 29-100 1-53 (53)
5 PF13720 Acetyltransf_11: Udp 83.3 2.3 5.1E-05 26.3 3.7 25 62-86 29-55 (83)
6 PF14003 YlbE: YlbE-like prote 76.6 4 8.7E-05 24.4 3.0 30 59-88 18-47 (65)
7 PRK13430 F0F1 ATP synthase sub 68.4 42 0.0009 25.1 7.5 65 17-82 151-232 (271)
8 COG1043 LpxA Acyl-[acyl carrie 67.5 8.7 0.00019 28.8 3.6 26 62-87 206-233 (260)
9 PRK13428 F0F1 ATP synthase sub 64.9 68 0.0015 25.7 8.5 66 17-82 323-406 (445)
10 PF03461 TRCF: TRCF domain; I 62.1 20 0.00042 22.7 4.1 32 52-83 21-52 (101)
11 PRK12461 UDP-N-acetylglucosami 59.8 15 0.00033 27.1 3.8 25 62-86 201-227 (255)
12 PRK13434 F0F1 ATP synthase sub 57.7 61 0.0013 22.5 8.1 63 19-82 57-136 (184)
13 cd00171 Sec7 Sec7 domain; Doma 54.0 74 0.0016 22.3 6.8 63 11-77 31-112 (185)
14 PF12098 DUF3574: Protein of u 54.0 13 0.00027 24.2 2.2 17 64-80 75-91 (104)
15 PRK13436 F0F1 ATP synthase sub 46.2 98 0.0021 21.4 7.3 63 18-81 60-139 (179)
16 PF13062 DUF3924: Protein of u 46.0 24 0.00051 20.4 2.2 20 65-84 15-34 (62)
17 PRK08474 F0F1 ATP synthase sub 45.5 99 0.0022 21.3 7.3 63 19-81 57-134 (176)
18 PF13043 DUF3903: Domain of un 44.6 23 0.00051 18.8 1.9 17 66-82 10-26 (40)
19 PHA03102 Small T antigen; Revi 44.2 78 0.0017 21.8 5.1 43 34-76 6-56 (153)
20 PRK05289 UDP-N-acetylglucosami 42.9 41 0.00088 24.7 3.7 25 62-86 205-231 (262)
21 PF10012 DUF2255: Uncharacteri 39.9 34 0.00075 22.6 2.6 18 62-79 79-96 (116)
22 PF00226 DnaJ: DnaJ domain; I 38.5 72 0.0016 17.7 4.8 39 38-76 5-54 (64)
23 PF10788 DUF2603: Protein of u 37.5 41 0.0009 23.0 2.8 33 66-98 65-97 (137)
24 PF12652 CotJB: CotJB protein; 30.8 53 0.0011 20.1 2.3 16 65-80 41-56 (78)
25 KOG0859|consensus 30.7 1E+02 0.0023 22.5 4.1 37 61-97 75-111 (217)
26 cd06257 DnaJ DnaJ domain or J- 30.5 91 0.002 16.5 3.8 33 43-75 10-52 (55)
27 cd06395 PB1_Map2k5 PB1 domain 30.1 42 0.00091 21.1 1.7 21 57-77 53-73 (91)
28 PF09349 OHCU_decarbox: OHCU d 29.8 88 0.0019 21.3 3.5 29 62-90 95-123 (159)
29 PF02097 Filo_VP35: Filovirida 29.2 1.8E+02 0.0038 22.5 5.2 57 14-70 202-260 (321)
30 COG5201 SKP1 SCF ubiquitin lig 28.7 66 0.0014 22.1 2.6 18 56-73 135-152 (158)
31 PF13373 DUF2407_C: DUF2407 C- 26.9 69 0.0015 21.7 2.5 20 60-79 10-29 (140)
32 COG0646 MetH Methionine syntha 26.3 48 0.001 25.7 1.8 15 59-73 295-309 (311)
33 PF09832 DUF2059: Uncharacteri 26.3 1.1E+02 0.0025 17.1 3.1 23 62-84 18-40 (64)
34 KOG2027|consensus 26.2 67 0.0014 25.6 2.6 28 62-89 96-123 (388)
35 PTZ00100 DnaJ chaperone protei 25.8 2E+02 0.0044 18.9 4.7 44 33-76 65-114 (116)
36 KOG0181|consensus 25.2 78 0.0017 23.2 2.6 28 13-40 54-91 (233)
37 PF04415 DUF515: Protein of un 25.1 2.6E+02 0.0056 22.6 5.7 78 20-97 72-163 (416)
38 KOG0713|consensus 24.0 49 0.0011 25.9 1.5 52 36-87 19-88 (336)
39 PF00249 Myb_DNA-binding: Myb- 23.7 1.3E+02 0.0028 15.9 3.8 34 16-49 7-42 (48)
40 PF00598 Flu_M1: Influenza Mat 22.8 1.9E+02 0.0041 19.8 4.0 27 16-42 22-48 (157)
41 PRK10969 DNA polymerase III su 22.4 2E+02 0.0043 17.6 5.2 36 62-97 16-52 (75)
42 PF03705 CheR_N: CheR methyltr 22.4 1.1E+02 0.0024 16.6 2.4 22 62-83 1-22 (57)
43 PF13766 ECH_C: 2-enoyl-CoA Hy 21.9 1.5E+02 0.0032 19.2 3.3 46 56-101 38-91 (118)
44 smart00271 DnaJ DnaJ molecular 21.8 1.5E+02 0.0032 15.9 3.5 31 45-75 13-54 (60)
45 TIGR01982 UbiB 2-polyprenylphe 21.6 2.9E+02 0.0063 21.9 5.5 70 17-86 49-118 (437)
46 KOG1014|consensus 21.0 27 0.00058 27.0 -0.4 42 57-98 77-120 (312)
47 COG5328 Uncharacterized protei 20.6 1.1E+02 0.0023 21.0 2.4 46 49-94 96-144 (160)
48 PF08700 Vps51: Vps51/Vps67; 20.5 2E+02 0.0043 16.9 4.8 13 84-96 41-53 (87)
49 PF10267 Tmemb_cc2: Predicted 20.3 1.1E+02 0.0025 24.3 2.9 29 52-80 32-60 (395)
50 COG1986 Inosine/xanthosine tri 20.2 1E+02 0.0023 21.9 2.4 20 59-78 7-26 (175)
No 1
>KOG0819|consensus
Probab=99.96 E-value=8e-29 Score=186.26 Aligned_cols=92 Identities=36% Similarity=0.577 Sum_probs=87.8
Q ss_pred cCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-----------------------------------
Q psy4859 11 KDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL----------------------------------- 55 (102)
Q Consensus 11 ~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~----------------------------------- 55 (102)
.+.|..||+.|++||+|+||||+++|+||++||++|++.|+.+|+
T Consensus 15 ~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA 94 (321)
T KOG0819|consen 15 VFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDA 94 (321)
T ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHH
Confidence 356888999999999999999999999999999999999999998
Q ss_pred ------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|||||.||.+|+++|+..|++||++||.+++||+|+++|++|++
T Consensus 95 ~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 95 KELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred HHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 38899999999999999999999999999999999999999999974
No 2
>KOG0819|consensus
Probab=99.94 E-value=2.1e-26 Score=173.26 Aligned_cols=98 Identities=39% Similarity=0.663 Sum_probs=95.0
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|++||++|||..|++||||+||||++||||+|||+|.|+..|+++|+
T Consensus 80 ~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 80 RAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred HHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
.|+|+||..|++++++.|++.+|+++++.|++++||||+++|+
T Consensus 160 ~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~ll 239 (321)
T KOG0819|consen 160 GNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLL 239 (321)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHH
Confidence 2999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 240 aiv 242 (321)
T KOG0819|consen 240 AIV 242 (321)
T ss_pred HHH
Confidence 986
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.89 E-value=1.1e-22 Score=121.43 Aligned_cols=66 Identities=53% Similarity=0.771 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHH
Q psy4859 16 YLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKR 95 (102)
Q Consensus 16 ~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~ 95 (102)
+||+.|++|++|+|+|+..+++|+++||+.|+.. |+++|++.||++|+++|++++||+|++
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~-------------------i~~~Y~~~~g~~L~~~i~~e~sGd~~~ 61 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRA-------------------IKQAYKKKYGKDLEEDIKKETSGDFEK 61 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHH-------------------HHHHHHHHHSS-HHHHHHHHSTHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccce-------------------eehhhhhhhHHHHHHHHHHhCCHHHHH
Confidence 6999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHh
Q psy4859 96 LLLAL 100 (102)
Q Consensus 96 ~ll~l 100 (102)
+|++|
T Consensus 62 ~Ll~l 66 (66)
T PF00191_consen 62 LLLAL 66 (66)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99986
No 4
>smart00335 ANX Annexin repeats.
Probab=99.72 E-value=1.6e-17 Score=95.31 Aligned_cols=53 Identities=57% Similarity=0.874 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhhCChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHh
Q psy4859 29 GTDDKTLIRIIVTRSEIDLGDIKQNFLKLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLAL 100 (102)
Q Consensus 29 gtde~~Li~il~~rs~~~l~~i~~~y~~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l 100 (102)
||||..|++|+++|++.|+.. |+++|++.||++|+++|++++||+|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~-------------------i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQA-------------------IKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHH-------------------HHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 799999999999999999999 99999999999999999999999999999875
No 5
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=83.34 E-value=2.3 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHh--CCcHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLY--GKTLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~y--g~~L~~~I~ 86 (102)
|++++.+++++|+..| +.++++.++
T Consensus 29 s~~~i~~l~~ayr~l~~~~~~~~~a~~ 55 (83)
T PF13720_consen 29 SKEEISALRRAYRILFRSGLTLEEALE 55 (83)
T ss_dssp -HHHHHHHHHHHHHHHTSSS-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 6677778999999988 445555554
No 6
>PF14003 YlbE: YlbE-like protein
Probab=76.57 E-value=4 Score=24.44 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=27.1
Q ss_pred hhCCHHHHHHHHHHHHHHhCCcHHHHHhhc
Q psy4859 59 VTRSEIDLGDIKQNFLKLYGKTLEEYIKDD 88 (102)
Q Consensus 59 ~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e 88 (102)
.+|.|.++.+...++..-|+++.-+.|.+-
T Consensus 18 LsR~P~~l~~fe~~a~~~y~kT~p~rVek~ 47 (65)
T PF14003_consen 18 LSRNPEELEAFEKEAKHFYKKTIPHRVEKF 47 (65)
T ss_pred HccCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 588999999999999999999999999863
No 7
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=68.37 E-value=42 Score=25.05 Aligned_cols=65 Identities=15% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCCCHH--HHHHHHhhCCh-hhHHHHHHHHHHHHhhC--------------CHHHHHHHHHHHHHHhCC
Q psy4859 17 LARRLKDAMAGIGTDDK--TLIRIIVTRSE-IDLGDIKQNFLKLYVTR--------------SEIDLGDIKQNFLKLYGK 79 (102)
Q Consensus 17 da~~L~~A~kg~gtde~--~Li~il~~rs~-~~l~~i~~~y~~il~~r--------------t~~~l~~ik~aY~~~yg~ 79 (102)
-.+.+.+.++|. .++. .++.+++.+.. ..+..|...|.+++..+ |++|..++++...+.||+
T Consensus 151 K~~ll~~l~~~~-~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~ 229 (271)
T PRK13430 151 KRELLARLLYGK-VTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIYGR 229 (271)
T ss_pred HHHHHHHHHhcc-CCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHHCC
Confidence 345566666653 3333 35667776544 35667788887655322 899999999999999998
Q ss_pred cHH
Q psy4859 80 TLE 82 (102)
Q Consensus 80 ~L~ 82 (102)
.+.
T Consensus 230 ~V~ 232 (271)
T PRK13430 230 PVH 232 (271)
T ss_pred ceE
Confidence 764
No 8
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=67.55 E-value=8.7 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHHh--CCcHHHHHhh
Q psy4859 62 SEIDLGDIKQNFLKLY--GKTLEEYIKD 87 (102)
Q Consensus 62 t~~~l~~ik~aY~~~y--g~~L~~~I~~ 87 (102)
+.+++.+++++|+..| +.++.+..+.
T Consensus 206 ~~e~i~alr~ayk~lfr~~~~~~e~~~~ 233 (260)
T COG1043 206 SREEIHALRKAYKLLFRSGLTLREALEE 233 (260)
T ss_pred CHHHHHHHHHHHHHHeeCCCCHHHHHHH
Confidence 5677888999999999 6677777665
No 9
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=64.86 E-value=68 Score=25.67 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=45.8
Q ss_pred HHHHHHHhhcCC-CCCHH--HHHHHHhhCCh-hhHHHHHHHHHHHHhhC--------------CHHHHHHHHHHHHHHhC
Q psy4859 17 LARRLKDAMAGI-GTDDK--TLIRIIVTRSE-IDLGDIKQNFLKLYVTR--------------SEIDLGDIKQNFLKLYG 78 (102)
Q Consensus 17 da~~L~~A~kg~-gtde~--~Li~il~~rs~-~~l~~i~~~y~~il~~r--------------t~~~l~~ik~aY~~~yg 78 (102)
-...+.+.++|. +.++. .++.+++.+.. ..+..+...|.+++..+ |++|..+|++...+.||
T Consensus 323 K~~ll~~l~~~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~g 402 (445)
T PRK13428 323 RVALLRKVLGGASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIYG 402 (445)
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHHC
Confidence 345566666663 35543 46677776554 46667777887654322 89999999999999999
Q ss_pred CcHH
Q psy4859 79 KTLE 82 (102)
Q Consensus 79 ~~L~ 82 (102)
+.+.
T Consensus 403 ~~V~ 406 (445)
T PRK13428 403 RPVS 406 (445)
T ss_pred CceE
Confidence 8765
No 10
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=62.08 E-value=20 Score=22.71 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=24.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhCCcHHH
Q psy4859 52 QNFLKLYVTRSEIDLGDIKQNFLKLYGKTLEE 83 (102)
Q Consensus 52 ~~y~~il~~rt~~~l~~ik~aY~~~yg~~L~~ 83 (102)
..|+++...+|.+++..+++.-..+||.--++
T Consensus 21 ~~Yrrl~~~~~~~el~~l~~El~DRFG~~P~e 52 (101)
T PF03461_consen 21 ELYRRLASAESEEELEDLREELIDRFGPLPEE 52 (101)
T ss_dssp HHHHHHHC--SHHHHHHHHHHHHHHH-S--HH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHcCCCcHH
Confidence 46889999999999999999999999987654
No 11
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=59.79 E-value=15 Score=27.08 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHHhCC--cHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLYGK--TLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~--~L~~~I~ 86 (102)
+++++..++++|+..|.. ++++.++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
T PRK12461 201 SSRAIRALKRAYKIIYRSGLSVQQAVA 227 (255)
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 666677799999988844 5666553
No 12
>PRK13434 F0F1 ATP synthase subunit delta; Provisional
Probab=57.67 E-value=61 Score=22.48 Aligned_cols=63 Identities=11% Similarity=0.248 Sum_probs=43.1
Q ss_pred HHHHHhhcCCCCCHH--HHHHHHhhCCh-hhHHHHHHHHHHHHhh--------------CCHHHHHHHHHHHHHHhCCcH
Q psy4859 19 RRLKDAMAGIGTDDK--TLIRIIVTRSE-IDLGDIKQNFLKLYVT--------------RSEIDLGDIKQNFLKLYGKTL 81 (102)
Q Consensus 19 ~~L~~A~kg~gtde~--~Li~il~~rs~-~~l~~i~~~y~~il~~--------------rt~~~l~~ik~aY~~~yg~~L 81 (102)
+.|.+.+++ +.++. -++.+|+.+.. ..+..|...|++++.. =|++|+.+|++..+++||+.+
T Consensus 57 ~~l~~~~~~-~~~~~~~nfl~lL~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~g~~v 135 (184)
T PRK13434 57 QTLAKNLRG-KISDITLNFLGVLLNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKFKSEF 135 (184)
T ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHHCCEe
Confidence 345555543 34443 45677776544 5667788888864421 189999999999999999865
Q ss_pred H
Q psy4859 82 E 82 (102)
Q Consensus 82 ~ 82 (102)
.
T Consensus 136 ~ 136 (184)
T PRK13434 136 I 136 (184)
T ss_pred E
Confidence 3
No 13
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=53.97 E-value=74 Score=22.26 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=39.7
Q ss_pred cCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHHH--------------HHhh-----CCHHHHHHHHH
Q psy4859 11 KDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLK--------------LYVT-----RSEIDLGDIKQ 71 (102)
Q Consensus 11 ~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~~--------------il~~-----rt~~~l~~ik~ 71 (102)
.+.|...|.-|+.. .|.+...+-++|+...+.. ..+.++|-+ .+++ .-..++.+|-+
T Consensus 31 ~~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~~~~-~~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile 106 (185)
T cd00171 31 DDSPKEIAKFLYET---EGLNKKAIGEYLGENNEFN-SLVLHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLE 106 (185)
T ss_pred CCCHHHHHHHHHhC---CCCCHHHHHHHHcCCchHH-HHHHHHHHHhcCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 35666677777775 5789999999999876433 454444541 2222 24466666666
Q ss_pred HHHHHh
Q psy4859 72 NFLKLY 77 (102)
Q Consensus 72 aY~~~y 77 (102)
+|.+.|
T Consensus 107 ~Fs~~y 112 (185)
T cd00171 107 KFSERY 112 (185)
T ss_pred HHHHHH
Confidence 666665
No 14
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=53.96 E-value=13 Score=24.21 Aligned_cols=17 Identities=6% Similarity=0.325 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhCCc
Q psy4859 64 IDLGDIKQNFLKLYGKT 80 (102)
Q Consensus 64 ~~l~~ik~aY~~~yg~~ 80 (102)
+.|.+|+++|++.|+..
T Consensus 75 ~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 75 ARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 34778999999999754
No 15
>PRK13436 F0F1 ATP synthase subunit delta; Provisional
Probab=46.24 E-value=98 Score=21.42 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCCCCHH--HHHHHHhhCCh-hhHHHHHHHHHHHH--------------hhCCHHHHHHHHHHHHHHhCCc
Q psy4859 18 ARRLKDAMAGIGTDDK--TLIRIIVTRSE-IDLGDIKQNFLKLY--------------VTRSEIDLGDIKQNFLKLYGKT 80 (102)
Q Consensus 18 a~~L~~A~kg~gtde~--~Li~il~~rs~-~~l~~i~~~y~~il--------------~~rt~~~l~~ik~aY~~~yg~~ 80 (102)
.+.|.+.+++ +.++. -++.+++.+.- ..+..|...|.+++ ..=|++|+..|++..+++||+.
T Consensus 60 ~~~l~~l~~~-~~~~~~~nfl~ll~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~g~~ 138 (179)
T PRK13436 60 FKIIDKIFSA-KIDIYLVNFLKILAKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKLNKK 138 (179)
T ss_pred HHHHHHHHhc-cCCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHHCCe
Confidence 3455666665 45543 45677776543 56667888887644 1228999999999999999986
Q ss_pred H
Q psy4859 81 L 81 (102)
Q Consensus 81 L 81 (102)
+
T Consensus 139 v 139 (179)
T PRK13436 139 V 139 (179)
T ss_pred E
Confidence 5
No 16
>PF13062 DUF3924: Protein of unknown function (DUF3924)
Probab=45.98 E-value=24 Score=20.36 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhCCcHHHH
Q psy4859 65 DLGDIKQNFLKLYGKTLEEY 84 (102)
Q Consensus 65 ~l~~ik~aY~~~yg~~L~~~ 84 (102)
-+..++++|+++.|.++.+.
T Consensus 15 kl~llkqayqkktgatises 34 (62)
T PF13062_consen 15 KLDLLKQAYQKKTGATISES 34 (62)
T ss_pred HHHHHHHHHHhhcCCccchh
Confidence 45569999999999987654
No 17
>PRK08474 F0F1 ATP synthase subunit delta; Validated
Probab=45.47 E-value=99 Score=21.29 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHhhCCh-hhHHHHHHHHHHHHh--------------hCCHHHHHHHHHHHHHHhCCcH
Q psy4859 19 RRLKDAMAGIGTDDKTLIRIIVTRSE-IDLGDIKQNFLKLYV--------------TRSEIDLGDIKQNFLKLYGKTL 81 (102)
Q Consensus 19 ~~L~~A~kg~gtde~~Li~il~~rs~-~~l~~i~~~y~~il~--------------~rt~~~l~~ik~aY~~~yg~~L 81 (102)
+.+.+.+++.+..-.-++.+|+.+.. ..+..|...|.+.+- .=|+.|+..|.+..++.+|+.+
T Consensus 57 ~vi~~~~~~~~~~~~nFL~vLi~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~g~~v 134 (176)
T PRK08474 57 EFLLSFVDNANAKFQNFIKLLAENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKFNAKI 134 (176)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHhCCeE
Confidence 33445555442222345566665443 455567777775431 2289999999999999999754
No 18
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=44.63 E-value=23 Score=18.85 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCcHH
Q psy4859 66 LGDIKQNFLKLYGKTLE 82 (102)
Q Consensus 66 l~~ik~aY~~~yg~~L~ 82 (102)
|+.++..-+++||++|-
T Consensus 10 i~kvr~eckrrfgktll 26 (40)
T PF13043_consen 10 IQKVRAECKRRFGKTLL 26 (40)
T ss_pred HHHHHHHHHHHhchhhh
Confidence 44588889999999873
No 19
>PHA03102 Small T antigen; Reviewed
Probab=44.23 E-value=78 Score=21.85 Aligned_cols=43 Identities=12% Similarity=0.284 Sum_probs=25.1
Q ss_pred HHHHHHhhCChh--hHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHH
Q psy4859 34 TLIRIIVTRSEI--DLGDIKQNFLKLYV------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 34 ~Li~il~~rs~~--~l~~i~~~y~~il~------~rt~~~l~~ik~aY~~~ 76 (102)
.+.++|.-..++ ....|+.+|.+... +-+++.++.|.++|+..
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L 56 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKF 56 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHH
Confidence 344555444445 56667777765431 33566777777777643
No 20
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=42.86 E-value=41 Score=24.72 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHhC--CcHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLYG--KTLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg--~~L~~~I~ 86 (102)
||+++..++++|...|. .++++.++
T Consensus 205 ~~~~~~~i~~a~~~~~~~~~~~~~~~~ 231 (262)
T PRK05289 205 SREEIHALRRAYKLLYRSGLTLEEALE 231 (262)
T ss_pred CHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 66666678888888884 45566553
No 21
>PF10012 DUF2255: Uncharacterized protein conserved in bacteria (DUF2255); InterPro: IPR016888 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.88 E-value=34 Score=22.64 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHHHhCC
Q psy4859 62 SEIDLGDIKQNFLKLYGK 79 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~ 79 (102)
+++...+|-++|..+||.
T Consensus 79 d~~~~~~iD~AYr~KY~~ 96 (116)
T PF10012_consen 79 DPALNDAIDAAYRAKYGG 96 (116)
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 556667799999999988
No 22
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=38.52 E-value=72 Score=17.68 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=24.1
Q ss_pred HHhhCChhhHHHHHHHHHHHH-------hhCCH----HHHHHHHHHHHHH
Q psy4859 38 IIVTRSEIDLGDIKQNFLKLY-------VTRSE----IDLGDIKQNFLKL 76 (102)
Q Consensus 38 il~~rs~~~l~~i~~~y~~il-------~~rt~----~~l~~ik~aY~~~ 76 (102)
||.-........|+.+|.++. .+... ..+..|.+||+-.
T Consensus 5 iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L 54 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEIL 54 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHh
Confidence 344344566677777777644 23344 6777788888654
No 23
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=37.53 E-value=41 Score=22.96 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 66 LGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 66 l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+..++++++..|.--|+++|-+.+-=||.++..
T Consensus 65 i~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~ 97 (137)
T PF10788_consen 65 IESLKNAQKENFELKLEKDILQQMPIDFEDVWA 97 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 345999999999999999999999989988643
No 24
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=30.75 E-value=53 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhCCc
Q psy4859 65 DLGDIKQNFLKLYGKT 80 (102)
Q Consensus 65 ~l~~ik~aY~~~yg~~ 80 (102)
+...+++.|+++||==
T Consensus 41 ~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 41 QRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3445999999999843
No 25
>KOG0859|consensus
Probab=30.66 E-value=1e+02 Score=22.52 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHH
Q psy4859 61 RSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLL 97 (102)
Q Consensus 61 rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~l 97 (102)
+..+=+.+|++-|.+.||.....++.-...-.|.+.|
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL 111 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVL 111 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHH
Confidence 3566788899999999999988877766666665544
No 26
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=30.52 E-value=91 Score=16.46 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=17.5
Q ss_pred ChhhHHHHHHHHHHHHh----------hCCHHHHHHHHHHHHH
Q psy4859 43 SEIDLGDIKQNFLKLYV----------TRSEIDLGDIKQNFLK 75 (102)
Q Consensus 43 s~~~l~~i~~~y~~il~----------~rt~~~l~~ik~aY~~ 75 (102)
.......|+.+|.++.- ..+...+..|.+||+.
T Consensus 10 ~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~ 52 (55)
T cd06257 10 PDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEV 52 (55)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 34455666666664431 1244556666777653
No 27
>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development. The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.
Probab=30.09 E-value=42 Score=21.12 Aligned_cols=21 Identities=10% Similarity=0.139 Sum_probs=17.0
Q ss_pred HHhhCCHHHHHHHHHHHHHHh
Q psy4859 57 LYVTRSEIDLGDIKQNFLKLY 77 (102)
Q Consensus 57 il~~rt~~~l~~ik~aY~~~y 77 (102)
-++-||.++|+|+-..|...+
T Consensus 53 RITVRSDeEm~AMlsyy~~~~ 73 (91)
T cd06395 53 RITVRSDEEMKAMLSYYCSTV 73 (91)
T ss_pred eeEecchHHHHHHHHHHHHHH
Confidence 567888899999999987654
No 28
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=29.76 E-value=88 Score=21.34 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHHHhhcCc
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEYIKDDCS 90 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~I~~e~s 90 (102)
.-.++..+.++|+.+||....-.++....
T Consensus 95 ~~~~L~~lN~~Y~~kFGf~Fvi~~~g~s~ 123 (159)
T PF09349_consen 95 ELAELAALNQAYEEKFGFPFVICARGRSA 123 (159)
T ss_dssp HHHHHHHHHHHHHHHHSS-----GTT--H
T ss_pred HHHHHHHHHHHHHHHcCCceEeecCCCCH
Confidence 34456677788999999988877776443
No 29
>PF02097 Filo_VP35: Filoviridae VP35; InterPro: IPR002953 The filoviridae are a group of viruses that cause haemorrhagic fevers with a high mortality rate. The family currently contains three viruses: Ebola virus sp., Lake Victoria marburgvirus and Reston ebolavirus, named after their corresponding outbreak regions. They possess negative-stranded RNA genomes, which encode at least 7 proteins. The VP35 protein is found in the genomes of all filoviruses. Its function is presently unknown, but it is thought to share the function of the phosphorylated proteins (polymerase subunits) of rhabdoviruses and paramyxoviruses due to its position in the genome. There is no evidence however, to suggest that VP35 is phosphorylated [].; PDB: 3KS8_D 3L2A_A 3KS4_A 3L28_E 3L25_D 3FKE_B 3L26_A 3L27_D 3L29_B.
Probab=29.22 E-value=1.8e+02 Score=22.48 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHh--hCChhhHHHHHHHHHHHHhhCCHHHHHHHH
Q psy4859 14 SSYLARRLKDAMAGIGTDDKTLIRIIV--TRSEIDLGDIKQNFLKLYVTRSEIDLGDIK 70 (102)
Q Consensus 14 ~~~da~~L~~A~kg~gtde~~Li~il~--~rs~~~l~~i~~~y~~il~~rt~~~l~~ik 70 (102)
+....+.|+.-+-|.||.-.-|..++| +|++..++-+...|+..|.--+++|-..|.
T Consensus 202 akdl~~il~~HLpG~~TAFHqLvqvI~kvgkD~~~Ldv~haeFq~~LaeGdS~q~AlIq 260 (321)
T PF02097_consen 202 AKDLKRILYDHLPGFGTAFHQLVQVICKVGKDNHDLDVIHAEFQASLAEGDSPQCALIQ 260 (321)
T ss_dssp HHHHHHHHHHCSSSSSBHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHHHcccchHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 445677888888999998888887765 578888999888888877766666655554
No 30
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=66 Score=22.11 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=10.1
Q ss_pred HHHhhCCHHHHHHHHHHH
Q psy4859 56 KLYVTRSEIDLGDIKQNF 73 (102)
Q Consensus 56 ~il~~rt~~~l~~ik~aY 73 (102)
.+-|.=||++..+|++.+
T Consensus 135 ni~ndfTpEEe~~irkEn 152 (158)
T COG5201 135 NIENDFTPEEERRIRKEN 152 (158)
T ss_pred CCCCCCCHHHHHHHHHhc
Confidence 344555666666666554
No 31
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=26.88 E-value=69 Score=21.73 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=16.9
Q ss_pred hCCHHHHHHHHHHHHHHhCC
Q psy4859 60 TRSEIDLGDIKQNFLKLYGK 79 (102)
Q Consensus 60 ~rt~~~l~~ik~aY~~~yg~ 79 (102)
+=|++|+..+|..|.+.|+.
T Consensus 10 GFS~~eI~~LR~QF~~~~~~ 29 (140)
T PF13373_consen 10 GFSPEEIQDLRSQFHSIYGD 29 (140)
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 34888888899999999983
No 32
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=26.29 E-value=48 Score=25.65 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=13.3
Q ss_pred hhCCHHHHHHHHHHH
Q psy4859 59 VTRSEIDLGDIKQNF 73 (102)
Q Consensus 59 ~~rt~~~l~~ik~aY 73 (102)
|+-||+||++++++-
T Consensus 295 CGTTPeHIraia~~v 309 (311)
T COG0646 295 CGTTPEHIRAIAEAV 309 (311)
T ss_pred cCCCHHHHHHHHHHh
Confidence 899999999998763
No 33
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=26.28 E-value=1.1e+02 Score=17.12 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHH
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEY 84 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~ 84 (102)
|.+|+.++-..|.+--|+.+.+.
T Consensus 18 t~~El~~i~~FY~Sp~Gqk~~~~ 40 (64)
T PF09832_consen 18 TEEELDAILAFYESPLGQKIVAK 40 (64)
T ss_dssp -HHHHHHHHHHHHSHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCHHhHHHHHH
Confidence 67777778888887777766543
No 34
>KOG2027|consensus
Probab=26.18 E-value=67 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHHHhhcC
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEYIKDDC 89 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~I~~e~ 89 (102)
-=.||..|++-|-++||+++........
T Consensus 96 EvpEL~~i~~~f~~kYGk~f~~~a~~l~ 123 (388)
T KOG2027|consen 96 EVPELREIRDLFVKKYGKEFVKAAIELR 123 (388)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 5689999999999999999999888775
No 35
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=25.79 E-value=2e+02 Score=18.93 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHHHHHHhhCChhhHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHH
Q psy4859 33 KTLIRIIVTRSEIDLGDIKQNFLKLYV------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 33 ~~Li~il~~rs~~~l~~i~~~y~~il~------~rt~~~l~~ik~aY~~~ 76 (102)
.-.-+||.-.......+|+.+|+++.. +=++.....|.+||+..
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL 114 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLL 114 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 344466665556667777777776542 22455666677666543
No 36
>KOG0181|consensus
Probab=25.19 E-value=78 Score=23.21 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=20.1
Q ss_pred chHHHHHHHHHhh----------cCCCCCHHHHHHHHh
Q psy4859 13 KSSYLARRLKDAM----------AGIGTDDKTLIRIIV 40 (102)
Q Consensus 13 ~~~~da~~L~~A~----------kg~gtde~~Li~il~ 40 (102)
+|-.|-+.+++.. .|+|.|-+.|++.-+
T Consensus 54 s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~r 91 (233)
T KOG0181|consen 54 SPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSR 91 (233)
T ss_pred CccchhhhhhhHhhccCCcceEEecCCCceeehhhHHH
Confidence 5556666677654 488999988887665
No 37
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=25.09 E-value=2.6e+02 Score=22.60 Aligned_cols=78 Identities=17% Similarity=0.193 Sum_probs=51.7
Q ss_pred HHHHhhcCCC-CCHH---HHHHHHhhCChhhHHHH--HHHHH--------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHH
Q psy4859 20 RLKDAMAGIG-TDDK---TLIRIIVTRSEIDLGDI--KQNFL--------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYI 85 (102)
Q Consensus 20 ~L~~A~kg~g-tde~---~Li~il~~rs~~~l~~i--~~~y~--------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I 85 (102)
.+.+-++|.= .|.. .+..|-...+..|+..| +..|. .-|-.--...+..|+..|...|..+|.+++
T Consensus 72 evN~~F~g~l~nD~~K~~li~qI~~A~S~eEi~~IdV~~~~~~le~~k~~~~lk~yK~~~I~~Ik~~yg~~~~~sla~el 151 (416)
T PF04415_consen 72 EVNKYFKGELPNDPQKIILINQIQSAQSIEEINKIDVKGAATQLEEAKKYKQLKNYKNQKINQIKDMYGPLLSQSLAQEL 151 (416)
T ss_pred HHHHHhcCcCCCChHHHHHHHHHHhcCCHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 4455667532 3333 34478888999999987 11111 133333567788999999999999999998
Q ss_pred hhcCchHHHHHH
Q psy4859 86 KDDCSGDYKRLL 97 (102)
Q Consensus 86 ~~e~sG~~~~~l 97 (102)
..+.-....+++
T Consensus 152 ~~ki~~e~~~l~ 163 (416)
T PF04415_consen 152 VRKIISEVNSLL 163 (416)
T ss_pred HHHHHHHHHHHH
Confidence 877655555543
No 38
>KOG0713|consensus
Probab=24.03 E-value=49 Score=25.88 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHhh----C------CHHHHHHHHHHHH--------HHhCCcHHHHHhh
Q psy4859 36 IRIIVTRSEIDLGDIKQNFLKLYVT----R------SEIDLGDIKQNFL--------KLYGKTLEEYIKD 87 (102)
Q Consensus 36 i~il~~rs~~~l~~i~~~y~~il~~----r------t~~~l~~ik~aY~--------~~yg~~L~~~I~~ 87 (102)
-++|+=..++.-+.|+.+|+++..- | -++.++.|..||+ ++|.+.-++.++.
T Consensus 19 YelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~ 88 (336)
T KOG0713|consen 19 YELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKD 88 (336)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhcc
Confidence 4566666667777899999987742 2 3467888999997 5677777888873
No 39
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=23.71 E-value=1.3e+02 Score=15.88 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHhhcCCCCC-HHHHHHHHh-hCChhhHHH
Q psy4859 16 YLARRLKDAMAGIGTD-DKTLIRIIV-TRSEIDLGD 49 (102)
Q Consensus 16 ~da~~L~~A~kg~gtd-e~~Li~il~-~rs~~~l~~ 49 (102)
.+-+.|.+|++-.|.+ =..+-+-+. +|+..|...
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 3456788888888888 455556666 677766543
No 40
>PF00598 Flu_M1: Influenza Matrix protein (M1); InterPro: IPR001561 Matrix protein (M1) of Influenza virus is a bifunctional membrane/RNA-binding protein that mediates the encapsidation of RNA-nucleoprotein cores into the membrane envelope. It is therefore required that M1 binds both membrane and RNA simultaneously []. M1 is comprised of two domains connected by a linker sequence. The N-terminal domain has a multi-helical structure that can be divided into two subdomains []. The C-terminal domain also contains alpha-helical structure.; GO: 0003723 RNA binding, 0005198 structural molecule activity; PDB: 3MD2_C 4D9J_L 1EA3_B 1AA7_A 3VDX_C 1HHI_F 2Z16_B.
Probab=22.79 E-value=1.9e+02 Score=19.84 Aligned_cols=27 Identities=33% Similarity=0.526 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHhhC
Q psy4859 16 YLARRLKDAMAGIGTDDKTLIRIIVTR 42 (102)
Q Consensus 16 ~da~~L~~A~kg~gtde~~Li~il~~r 42 (102)
.-|+.|+.-+.|..+|=+++.++|-+|
T Consensus 22 ~~a~kLe~vF~Gkn~DLd~llEWlK~r 48 (157)
T PF00598_consen 22 EIAQKLEDVFAGKNTDLDSLLEWLKNR 48 (157)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHT-
T ss_pred HHHHHHHHHhcccccCHHHHHHHHhcC
Confidence 568999999999999999999999876
No 41
>PRK10969 DNA polymerase III subunit theta; Reviewed
Probab=22.44 E-value=2e+02 Score=17.65 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHhCCc-HHHHHhhcCchHHHHHH
Q psy4859 62 SEIDLGDIKQNFLKLYGKT-LEEYIKDDCSGDYKRLL 97 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~-L~~~I~~e~sG~~~~~l 97 (102)
-+-++.|-.=+|+.+|++. ..+.|..+...+++..+
T Consensus 16 vnvDLaASgVafkER~n~pvi~e~ve~eqPe~lR~yF 52 (75)
T PRK10969 16 VNVDLAASGVAFKERYNMPVIAEAVEREQPEHLRSYF 52 (75)
T ss_pred HHHHHHHHHHHHHHHcCCcccHHHHHHhCCHHHHHHH
Confidence 3556667778899999888 55667777777666554
No 42
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=22.36 E-value=1.1e+02 Score=16.59 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHhCCcHHH
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEE 83 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~ 83 (102)
|++++..+.+.-.+.+|-+|..
T Consensus 1 sd~~f~~~~~~i~~~~Gi~l~~ 22 (57)
T PF03705_consen 1 SDAEFERFRELIYRRTGIDLSE 22 (57)
T ss_dssp -HHHHHHHHHHHHHHH-----G
T ss_pred CHHHHHHHHHHHHHHHCCCCch
Confidence 4667777888888888877754
No 43
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=21.85 E-value=1.5e+02 Score=19.19 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcC--------chHHHHHHHHhh
Q psy4859 56 KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDC--------SGDYKRLLLALV 101 (102)
Q Consensus 56 ~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~--------sG~~~~~ll~l~ 101 (102)
+.+-++||-=+....+.+++-.+.+|.+.+..|. .|||...+-+++
T Consensus 38 ~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 38 ETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4567778888888999999888899999988774 378877776654
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=21.81 E-value=1.5e+02 Score=15.95 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHh-----------hCCHHHHHHHHHHHHH
Q psy4859 45 IDLGDIKQNFLKLYV-----------TRSEIDLGDIKQNFLK 75 (102)
Q Consensus 45 ~~l~~i~~~y~~il~-----------~rt~~~l~~ik~aY~~ 75 (102)
.....|+.+|.++.. ......+..|.+||+.
T Consensus 13 ~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~ 54 (60)
T smart00271 13 ASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEV 54 (60)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 455566666654321 1234556667777754
No 45
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=21.61 E-value=2.9e+02 Score=21.88 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCcHHHHHh
Q psy4859 17 LARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYVTRSEIDLGDIKQNFLKLYGKTLEEYIK 86 (102)
Q Consensus 17 da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~ 86 (102)
.++.++.++...|.---.+=.++.+|..-=-..+..+...+--.-.|-....+++..++.+|+++++...
T Consensus 49 ~~~~l~~~l~~lGp~fiKlGQ~lS~r~dllp~~~~~~L~~Lqd~v~p~~~~~~~~~l~~elg~~~~~~F~ 118 (437)
T TIGR01982 49 RGERLRLALEELGPTFIKFGQTLSTRADLLPADIAEELSLLQDRVPPFDFKVARKVIEAALGGPLEELFA 118 (437)
T ss_pred HHHHHHHHHHHcCchhHHHhHHHHhCcccCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCcCHHHHHh
Confidence 4788999999988877777788988864323333344444444445555667888888899998887654
No 46
>KOG1014|consensus
Probab=20.97 E-value=27 Score=27.02 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=29.4
Q ss_pred HHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchH--HHHHHH
Q psy4859 57 LYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGD--YKRLLL 98 (102)
Q Consensus 57 il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~--~~~~ll 98 (102)
+|.+||.+-|.+++++-.++|+....-.+-+=++|+ |+++.-
T Consensus 77 vLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~ 120 (312)
T KOG1014|consen 77 VLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLE 120 (312)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHH
Confidence 668999999999999999999944333333334555 766543
No 47
>COG5328 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.61 E-value=1.1e+02 Score=20.97 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHh---CCcHHHHHhhcCchHHH
Q psy4859 49 DIKQNFLKLYVTRSEIDLGDIKQNFLKLY---GKTLEEYIKDDCSGDYK 94 (102)
Q Consensus 49 ~i~~~y~~il~~rt~~~l~~ik~aY~~~y---g~~L~~~I~~e~sG~~~ 94 (102)
.|-+.|.+.+-+.||.||.+|--.-...+ ...|.+.++.+..-||.
T Consensus 96 mICeSYY~AIRsstPsqIEAiDMGRRGlHNeGSqtL~dRL~GKi~~DfD 144 (160)
T COG5328 96 MICESYYQAIRSSTPSQIEAIDMGRRGLHNEGSQTLMDRLSGKIKVDFD 144 (160)
T ss_pred HHHHHHHHHHHhCCHhhhhHhhhcccccccccHHHHHHHhcCceeechH
Confidence 45566778999999999999975544444 24566666666655553
No 48
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=20.49 E-value=2e+02 Score=16.92 Aligned_cols=13 Identities=8% Similarity=0.284 Sum_probs=5.1
Q ss_pred HHhhcCchHHHHH
Q psy4859 84 YIKDDCSGDYKRL 96 (102)
Q Consensus 84 ~I~~e~sG~~~~~ 96 (102)
+++.-+.+.|+++
T Consensus 41 eLr~~V~~nY~~f 53 (87)
T PF08700_consen 41 ELRKLVYENYRDF 53 (87)
T ss_pred HHHHHHHhhHHHH
Confidence 3333333444443
No 49
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.29 E-value=1.1e+02 Score=24.32 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=23.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhCCc
Q psy4859 52 QNFLKLYVTRSEIDLGDIKQNFLKLYGKT 80 (102)
Q Consensus 52 ~~y~~il~~rt~~~l~~ik~aY~~~yg~~ 80 (102)
..|-.+.-...+.|..+||++|+++-.++
T Consensus 32 ~eyLkl~~~aDk~Q~~rIkq~FekkNqks 60 (395)
T PF10267_consen 32 AEYLKLASNADKQQAARIKQVFEKKNQKS 60 (395)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHhHHH
Confidence 34667778889999999999999876554
No 50
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=20.18 E-value=1e+02 Score=21.88 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.9
Q ss_pred hhCCHHHHHHHHHHHHHHhC
Q psy4859 59 VTRSEIDLGDIKQNFLKLYG 78 (102)
Q Consensus 59 ~~rt~~~l~~ik~aY~~~yg 78 (102)
.|.+|.-++|++++|.+.|+
T Consensus 7 gT~NpaKi~Av~~af~~~~~ 26 (175)
T COG1986 7 GTTNPAKIRAVEEAFERLFG 26 (175)
T ss_pred cCCChHHHHHHHHHHHHhcC
Confidence 47788899999999999998
Done!