Query psy4859
Match_columns 102
No_of_seqs 128 out of 1070
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:29:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n00_A Annexin GH1; membrane-b 100.0 3E-28 1E-32 183.2 11.0 95 7-101 11-158 (321)
2 1yii_A Annexin A5, annexin V, 100.0 3.6E-28 1.2E-32 182.6 11.1 96 7-102 9-157 (320)
3 1axn_A Annexin III; annexin fa 100.0 1.3E-27 4.5E-32 179.9 13.2 98 4-101 82-244 (323)
4 2hyv_A Annexin A2; calcium-bin 100.0 8E-28 2.7E-32 180.1 12.0 98 4-101 66-229 (308)
5 1hm6_A Annexin 1; phospholipid 99.9 6.7E-28 2.3E-32 183.1 9.9 98 4-101 106-268 (346)
6 2zhj_A Annexin A4; zynogen gra 99.9 3.9E-27 1.3E-31 177.2 13.3 98 4-101 81-243 (322)
7 1dm5_A Annexin XII E105K mutan 99.9 4.1E-27 1.4E-31 176.6 12.5 91 12-102 12-155 (315)
8 1w3w_A Annexin A8; coagulation 99.9 4.4E-27 1.5E-31 177.4 12.2 90 13-102 22-164 (327)
9 2zhj_A Annexin A4; zynogen gra 99.9 8.9E-27 3E-31 175.2 12.6 90 12-101 17-159 (322)
10 1axn_A Annexin III; annexin fa 99.9 1.2E-26 4E-31 174.7 12.7 90 13-102 19-161 (323)
11 1yii_A Annexin A5, annexin V, 99.9 1.8E-26 6.3E-31 173.3 12.6 98 4-101 78-240 (320)
12 2hyv_A Annexin A2; calcium-bin 99.9 2E-26 6.8E-31 172.5 12.7 91 12-102 2-145 (308)
13 1hm6_A Annexin 1; phospholipid 99.9 4.3E-26 1.5E-30 173.2 12.5 90 13-102 43-185 (346)
14 1dm5_A Annexin XII E105K mutan 99.9 6.2E-26 2.1E-30 170.2 12.6 98 4-101 76-238 (315)
15 1w3w_A Annexin A8; coagulation 99.9 1.3E-25 4.4E-30 169.4 12.6 99 4-102 85-249 (327)
16 1n00_A Annexin GH1; membrane-b 99.9 1.8E-25 6.2E-30 168.0 10.7 98 4-101 80-241 (321)
17 2ii2_A Alpha-11 giardin; helix 99.9 5.9E-25 2E-29 164.5 12.9 97 4-101 67-226 (310)
18 3chj_A Alpha-14 giardin; calci 99.9 7.7E-25 2.6E-29 165.8 13.4 98 4-101 73-237 (337)
19 1m9i_A Annexin VI; calcium-bin 99.9 4.7E-25 1.6E-29 179.0 12.8 90 13-102 363-505 (672)
20 1m9i_A Annexin VI; calcium-bin 99.9 9.9E-25 3.4E-29 177.1 12.2 89 13-101 20-161 (672)
21 4evf_A Alpha-1 giardin, giardi 99.9 2.6E-24 8.9E-29 160.0 12.9 97 4-101 65-221 (295)
22 4evf_A Alpha-1 giardin, giardi 99.9 2E-24 6.8E-29 160.6 11.4 89 11-101 1-144 (295)
23 3chj_A Alpha-14 giardin; calci 99.9 7.7E-23 2.6E-27 154.8 8.9 92 9-101 7-153 (337)
24 2ii2_A Alpha-11 giardin; helix 99.9 1.9E-22 6.6E-27 150.9 10.3 87 13-101 5-146 (310)
25 4aj5_1 SKA3, spindle and kinet 63.3 24 0.00083 21.9 5.7 63 14-78 18-101 (101)
26 2o37_A Protein SIS1; HSP40, J- 59.5 24 0.00083 20.7 5.1 43 34-76 9-58 (92)
27 1faf_A Large T antigen; J doma 54.0 29 0.001 19.9 5.4 42 35-76 13-62 (79)
28 3ks4_A Polymerase cofactor VP3 45.2 48 0.0016 22.4 5.0 56 14-69 65-122 (184)
29 1r8s_E ARNO; protein transport 43.8 76 0.0026 21.8 6.7 65 9-77 39-122 (203)
30 3fke_A Polymerase cofactor VP3 42.2 50 0.0017 21.1 4.6 57 14-70 10-68 (129)
31 1iur_A KIAA0730 protein; DNAJ 40.7 55 0.0019 19.2 5.8 49 28-76 11-70 (88)
32 2r09_A Cytohesin-3; autoinhibi 39.8 1E+02 0.0035 22.4 6.7 43 9-55 41-83 (347)
33 3frr_A Uncharacterized protein 38.1 22 0.00076 24.4 2.7 30 62-91 115-144 (191)
34 2och_A Hypothetical protein DN 38.0 52 0.0018 18.2 4.9 41 36-76 11-58 (73)
35 2ctp_A DNAJ homolog subfamily 37.2 48 0.0016 18.5 3.7 42 36-77 10-60 (78)
36 3t57_A UDP-N-acetylglucosamine 37.0 28 0.00097 24.8 3.2 25 62-86 232-262 (305)
37 4e6u_A Acyl-[acyl-carrier-prot 36.5 41 0.0014 23.2 3.9 26 62-87 210-237 (265)
38 2ys8_A RAB-related GTP-binding 35.8 62 0.0021 18.8 4.2 41 36-76 30-79 (90)
39 3no7_A PARB, putative plasmid 34.4 72 0.0025 18.9 4.1 34 62-95 17-54 (80)
40 2qsr_A Transcription-repair co 33.7 54 0.0019 21.8 4.0 31 52-82 32-62 (173)
41 2guz_A Mitochondrial import in 33.5 64 0.0022 17.9 6.1 44 33-76 14-64 (71)
42 1hdj_A Human HSP40, HDJ-1; mol 33.2 65 0.0022 17.9 4.0 39 38-76 8-55 (77)
43 1j2z_A Acyl-[acyl-carrier-prot 32.9 51 0.0017 23.0 4.0 25 62-86 203-229 (270)
44 1abv_A Delta subunit of the F1 32.0 89 0.0031 19.1 6.0 62 17-79 56-134 (134)
45 2cug_A Mkiaa0962 protein; DNAJ 31.8 75 0.0026 18.2 4.2 43 35-77 19-70 (88)
46 3ltl_A Brefeldin A-inhibited g 30.9 1.3E+02 0.0045 20.7 6.7 65 9-77 45-128 (211)
47 2nvo_A RO sixty-related protei 29.5 73 0.0025 24.7 4.6 83 5-89 71-161 (535)
48 4eqy_A Acyl-[acyl-carrier-prot 29.1 63 0.0021 22.6 3.9 25 62-86 225-251 (283)
49 2z16_A Matrix protein 1, M1; A 28.0 58 0.002 21.6 3.3 29 14-42 28-56 (165)
50 2ctr_A DNAJ homolog subfamily 26.4 97 0.0033 17.7 4.1 44 35-78 9-61 (88)
51 3ggy_A Increased sodium tolera 25.6 30 0.001 23.8 1.6 30 62-91 121-150 (193)
52 3r0s_A Acyl-[acyl-carrier-prot 25.2 84 0.0029 21.7 4.0 24 62-85 207-231 (266)
53 3hsq_A Acyl-[acyl-carrier-prot 24.1 92 0.0031 21.3 4.0 25 62-86 203-229 (259)
54 3hzr_A Tryptophanyl-tRNA synth 22.7 1.7E+02 0.0058 22.0 5.4 23 10-32 281-305 (386)
55 2npt_A Dual specificity mitoge 20.8 78 0.0027 19.5 2.6 20 58-77 68-87 (106)
56 2dn9_A DNAJ homolog subfamily 20.4 1.2E+02 0.0042 16.7 4.1 42 36-77 10-61 (79)
57 3pl5_A SMU_165, putative uncha 20.4 36 0.0012 24.9 1.2 38 62-99 100-137 (320)
No 1
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=99.95 E-value=3e-28 Score=183.17 Aligned_cols=95 Identities=29% Similarity=0.437 Sum_probs=91.2
Q ss_pred HHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------
Q psy4859 7 VQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------- 55 (102)
Q Consensus 7 v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------- 55 (102)
+.+..+||.+||+.|++||||+||||++||+|||+|||.|+..|+++|+
T Consensus 11 ~~~~~~~~~~DA~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~ 90 (321)
T 1n00_A 11 VPTTVPSVSEDCEQLRKAFSGWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPA 90 (321)
T ss_dssp CCSSCCCHHHHHHHHHHHTSSSSCCHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHH
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChh
Confidence 5567789999999999999999999999999999999999999999998
Q ss_pred ----------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhh
Q psy4859 56 ----------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALV 101 (102)
Q Consensus 56 ----------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~ 101 (102)
+|+|+|||+|+.+|+++|++.||++|+++|++++||+|+++|++++
T Consensus 91 ~~dA~~l~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~~~L~~lv 158 (321)
T 1n00_A 91 ERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPLV 158 (321)
T ss_dssp HHHHHHHHHHHSSSCSSCHHHHHHHHSSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCcHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999986
No 2
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=99.95 E-value=3.6e-28 Score=182.55 Aligned_cols=96 Identities=28% Similarity=0.530 Sum_probs=90.9
Q ss_pred HHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------
Q psy4859 7 VQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------- 55 (102)
Q Consensus 7 v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------- 55 (102)
+.+..+||.+||+.|++||||+||||++||+||++|||.|+..|+.+|+
T Consensus 9 ~~~~~~~~~~Da~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~ 88 (320)
T 1yii_A 9 TAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPAR 88 (320)
T ss_dssp CCCSSCCHHHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHH
T ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChH
Confidence 4456678999999999999999999999999999999999999999998
Q ss_pred ----------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ----------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ----------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||+|+++|+++|++.||++|+++|++++||+|+++|++++.
T Consensus 89 ~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~ 157 (320)
T 1yii_A 89 IFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQ 157 (320)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCchHHHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHh
Confidence 39999999999999999999999999999999999999999999873
No 3
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=99.95 E-value=1.3e-27 Score=179.88 Aligned_cols=98 Identities=31% Similarity=0.480 Sum_probs=94.5
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|+.+|+.+||+.|++||||+||||.+||+|||+|||.|+..|+++|+
T Consensus 82 ~~l~~l~~~p~~~DA~~L~~A~kG~Gtde~~lieIL~~Rs~~q~~~I~~aY~~~y~~~Le~di~se~sG~~~~ll~~l~~ 161 (323)
T 1axn_A 82 HLMVALVTPPAVFDAKQLKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLAD 161 (323)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHCSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCchHHHHHHHHHHhccCCCCHHHHhHHhcCCCHHHHHHHHHHHHHhhCcCHHHHHHHhcCcHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+|+|+|||.||.+|+++|++.||++|+++|++++||+|+++|+
T Consensus 162 ~~R~e~~~vd~~~a~~DA~~L~~A~~~~~Gtde~~li~Il~tRs~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~Ll 241 (323)
T 1axn_A 162 GRRDESLKVDEHLAKQDAQILYKAGENRWGTDEDKFTEILCLRSFPQLKLTFDEYRNISQKDIVDSIKGELSGHFEDLLL 241 (323)
T ss_dssp TCSCCCSCCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHH
T ss_pred cccccCCCCCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHhHhcCchHHHHHH
Confidence 3899999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 242 ~lv 244 (323)
T 1axn_A 242 AIV 244 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 4
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=99.95 E-value=8e-28 Score=180.06 Aligned_cols=98 Identities=28% Similarity=0.467 Sum_probs=94.6
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|+.+|+.+||+.|++||||+||||.+||+|||+|||.|+..|+++|+
T Consensus 66 ~~l~~l~~~~~~~DA~~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~ 145 (308)
T 2hyv_A 66 TVILGLLKTPAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK 145 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTSTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHc
Confidence 5688999999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHH
Q psy4859 56 --------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLL 97 (102)
Q Consensus 56 --------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~l 97 (102)
+|+|+|||+||.+|+++|++.||++|+++|++++||+|+++|
T Consensus 146 ~~r~~e~~~vd~~~a~~DA~~L~~A~~~~~Gtde~~li~Il~~RS~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~L 225 (308)
T 2hyv_A 146 GRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVPHLQKVFDRYKSYSPYDMLESIRKEVKGDLENAF 225 (308)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHTTTCSSCHHHHHHHHCCHHHHHHH
T ss_pred cccccccCCCCccHHHHHHHHHHHHhhccCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHHHhcCchHHHHH
Confidence 389999999999999999999999999999999999999999
Q ss_pred HHhh
Q psy4859 98 LALV 101 (102)
Q Consensus 98 l~l~ 101 (102)
++++
T Consensus 226 ~~lv 229 (308)
T 2hyv_A 226 LNLV 229 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 5
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=99.95 E-value=6.7e-28 Score=183.10 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=94.8
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|+.+|+++||+.|++||||+||||.+||+|||+|||.|+..|+++|+
T Consensus 106 ~~l~~l~~~p~~~DA~~L~~AmkG~GTde~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~ 185 (346)
T 1hm6_A 106 EVALALLKTPAQFDADELRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAK 185 (346)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHhCCcHHHHHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+|+|+|||+||.+|+++|++.||++|+++|++++||+|+++|+
T Consensus 186 ~~R~e~~~vd~~~a~~DA~~L~~A~~~~~Gtde~~li~IL~tRS~~~L~~i~~~Y~~~~g~~Le~~I~~e~sG~~~~~L~ 265 (346)
T 1hm6_A 186 GDRSEDLAINDDLADTDARALYEAGERRKGTDLNVFITILTTRSYPHLRRVFQKYSKYSKHDMNKVLDLELKGDIENCLT 265 (346)
T ss_dssp TCCCCCCSCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHHTTCCCCTTSBCCCCCBHHHHHHHH
T ss_pred ccccccCCCCchHHHHHHHHHHHHHhccCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCchHHHHHH
Confidence 3999999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 266 ~lv 268 (346)
T 1hm6_A 266 VVV 268 (346)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
No 6
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=99.95 E-value=3.9e-27 Score=177.17 Aligned_cols=98 Identities=27% Similarity=0.475 Sum_probs=94.5
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|+.+|+++||+.|++||+|+||||.+||+|||+||+.|+..|+++|+
T Consensus 81 ~~l~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~ll~ 160 (322)
T 2zhj_A 81 QVILGMMTPTVLYDVQELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLTA 160 (322)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHhhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhhcCchHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+|+|+||+.|+.+|+++|++.||++|+++|++++||+|+++|+
T Consensus 161 ~~r~e~~~vd~~~a~~dA~~L~~A~~~~~Gtde~~li~Il~~Rs~~~L~~i~~~Y~~~~g~~Le~~I~~e~sGd~~~~Ll 240 (322)
T 2zhj_A 161 GGRDEGNYLDDALVKQDAQDLYEAGEKRWGTDEVKFLSILCSRNRNHLLHVFDEYKRISQKDIEQSIKSETSGSFEDALL 240 (322)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHH
T ss_pred hccccccccCCCHHHHHHHHHHHhhhcCCCCchHHHhHhHHhCCHHHHHHHHHHHHHHHCcCHHHHHHHhcCccHHHHHH
Confidence 3889999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 241 alv 243 (322)
T 2zhj_A 241 AIV 243 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 7
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=99.95 E-value=4.1e-27 Score=176.58 Aligned_cols=91 Identities=35% Similarity=0.557 Sum_probs=87.5
Q ss_pred CchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH------------------------------------
Q psy4859 12 DKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------ 55 (102)
Q Consensus 12 ~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------ 55 (102)
.||..||+.|++||||+||||++||+|||+|||.|+..|+++|+
T Consensus 12 ~~~~~DA~~L~~A~kG~Gtde~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~ 91 (315)
T 1dm5_A 12 FNSREDAETLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAE 91 (315)
T ss_dssp CCHHHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHHH
Confidence 47889999999999999999999999999999999999999998
Q ss_pred -----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 -----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 -----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||+|+.+|+++|++.||++|+++|++++||+|+++|++++.
T Consensus 92 ~L~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~ 155 (315)
T 1dm5_A 92 QLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQ 155 (315)
T ss_dssp HHHHHHHSSSCCHHHHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCchhhhhhhHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHc
Confidence 39999999999999999999999999999999999999999999873
No 8
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=99.94 E-value=4.4e-27 Score=177.38 Aligned_cols=90 Identities=31% Similarity=0.528 Sum_probs=86.9
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
+|.+||+.|++||||+||||++||+|||+|||.|++.|+++|+
T Consensus 22 ~~~~DA~~L~kA~kG~GtdE~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA~~ 101 (327)
T 1w3w_A 22 NPDPDAETLYKAMKGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKE 101 (327)
T ss_dssp CCHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHH
Confidence 5789999999999999999999999999999999999999998
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||+||.+|+++|++.||++|+++|++++||+|+++|++++.
T Consensus 102 L~~A~~g~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~sLe~dI~~e~sG~~~~~L~~lv~ 164 (327)
T 1w3w_A 102 LHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQ 164 (327)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHhhccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCccHHHHHhhccCchHHHHHHHHHH
Confidence 39999999999999999999999999999999999999999999873
No 9
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=99.94 E-value=8.9e-27 Score=175.21 Aligned_cols=90 Identities=28% Similarity=0.500 Sum_probs=86.6
Q ss_pred CchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH------------------------------------
Q psy4859 12 DKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------ 55 (102)
Q Consensus 12 ~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------ 55 (102)
.+|..||+.|++||||+||||++||+||++||+.|++.|+.+|+
T Consensus 17 ~~~~~Da~~L~kA~kG~GtdE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lkselsG~fe~~l~~l~~~~~~~DA~ 96 (322)
T 2zhj_A 17 FNATEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKSELSSNFEQVILGMMTPTVLYDVQ 96 (322)
T ss_dssp CCHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHhhcCccHHHHHHHHcCCcHHHHHH
Confidence 35789999999999999999999999999999999999999998
Q ss_pred -----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhh
Q psy4859 56 -----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALV 101 (102)
Q Consensus 56 -----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~ 101 (102)
+|+|+|||+|+++|+++|++.||++|+++|++++||+|+++|++++
T Consensus 97 ~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~ll 159 (322)
T 2zhj_A 97 ELRRAMKGAGTDEGCLIEILASRNPEEIRRINQTYQQQYGRSLEEDICSDTSFMFQRVLVSLT 159 (322)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhhcCchHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999986
No 10
>1axn_A Annexin III; annexin family, calcium/phospholipid-binding protein complex; 1.78A {Homo sapiens} SCOP: a.65.1.1 PDB: 1aii_A
Probab=99.94 E-value=1.2e-26 Score=174.66 Aligned_cols=90 Identities=33% Similarity=0.555 Sum_probs=86.7
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
+|..||+.|++||||+||||++||+||++||+.|++.|+.+|+
T Consensus 19 ~~~~Da~~L~kA~kG~Gtde~~li~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~p~~~DA~~ 98 (323)
T 1axn_A 19 SPSVDAEAIQKAIRGIGTDEKMLISILTERSNAQRQLIVKEYQAAYGKELKDDLKGDLSGHFEHLMVALVTPPAVFDAKQ 98 (323)
T ss_dssp CHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCccHHHHHHHHhcCchHHHHHH
Confidence 5789999999999999999999999999999999999999998
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||+|+++|+++|++.||++|+++|++++||+|+++|++++.
T Consensus 99 L~~A~kG~Gtde~~lieIL~~Rs~~q~~~I~~aY~~~y~~~Le~di~se~sG~~~~ll~~l~~ 161 (323)
T 1axn_A 99 LKKSMKGAGTNEDALIEILTTRTSRQMKDISQAYYTVYKKSLGDDISSETSGDFRKALLTLAD 161 (323)
T ss_dssp HHHHHCSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHhccCCCCHHHHhHHhcCCCHHHHHHHHHHHHHhhCcCHHHHHHHhcCcHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999863
No 11
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=99.94 E-value=1.8e-26 Score=173.27 Aligned_cols=98 Identities=32% Similarity=0.535 Sum_probs=94.4
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
..++.|+.+|+++||+.|++|++|+||||.+||+|||+||+.|+..|+++|+
T Consensus 78 ~ll~~l~~~~~~~DA~~L~~A~kg~Gtde~~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~ 157 (320)
T 1yii_A 78 TLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQ 157 (320)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHccChHHHHHHHHHHHhccCCCchHHHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+|+|+||+.||.+|+++|++.||++|+++|++++||+|+++|+
T Consensus 158 ~~r~~~~~vd~~~a~~dA~~L~~A~~~~~Gtde~~li~Il~tRs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Ll 237 (320)
T 1yii_A 158 ANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLL 237 (320)
T ss_dssp TCCCCSCCCCHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHCCTTCCHHHHHHH
T ss_pred hccCccccCCchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHH
Confidence 3889999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 238 alv 240 (320)
T 1yii_A 238 AVV 240 (320)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 12
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=99.94 E-value=2e-26 Score=172.49 Aligned_cols=91 Identities=26% Similarity=0.465 Sum_probs=87.3
Q ss_pred CchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH------------------------------------
Q psy4859 12 DKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------ 55 (102)
Q Consensus 12 ~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------ 55 (102)
.+|..||+.|++||||+||||++||+||++||+.|++.|..+|+
T Consensus 2 f~~~~Da~~L~kA~kg~Gtde~~ii~IL~~rs~~qr~~I~~~Y~~~~g~dL~~~lk~elsG~fe~~l~~l~~~~~~~DA~ 81 (308)
T 2hyv_A 2 FDAERDALNIETAIKTKGVDEVTIVNILTNRSNAQRQDIAFAYQRRTKKELASALKSALSGHLETVILGLLKTPAQYDAS 81 (308)
T ss_dssp CCHHHHHHHHHHHHHSTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHHHcCCCHHHHHHHHcCCcHHHHHH
Confidence 46789999999999999999999999999999999999999998
Q ss_pred -----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 -----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 -----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||.|+++|+++|++.||++|+++|++++||+|+++|++|+.
T Consensus 82 ~L~~AmkG~Gtde~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~~ll~~l~~ 145 (308)
T 2hyv_A 82 ELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK 145 (308)
T ss_dssp HHHHHTSTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHHHHHHHHHc
Confidence 49999999999999999999999999999999999999999999873
No 13
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=99.94 E-value=4.3e-26 Score=173.17 Aligned_cols=90 Identities=27% Similarity=0.469 Sum_probs=86.6
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
+|..||+.|++||||+||||++||+||++||+.|++.|..+|+
T Consensus 43 ~~~~Da~~L~kA~kg~GtDE~~iI~IL~~rs~~Qr~~I~~~Y~~~~g~dL~~~lkselsG~fe~~l~~l~~~p~~~DA~~ 122 (346)
T 1hm6_A 43 NPSSDVEALHKAITVKGVDEATIIEILTKRTNAQRQQIKAAYLQEKGKPLDEALKKALTGHLEEVALALLKTPAQFDADE 122 (346)
T ss_dssp CHHHHHHHHHHHHSSTTCCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCccHHHHHHHhcCccHHHHHHHHhCCcHHHHHHH
Confidence 4789999999999999999999999999999999999999998
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||.|+.+|+++|++.||++|+++|++++||+|+++|++|+.
T Consensus 123 L~~AmkG~GTde~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~~ll~~L~~ 185 (346)
T 1hm6_A 123 LRAAMKGLGTDEDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQKALLSLAK 185 (346)
T ss_dssp HHHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHHHHHHHHhh
Confidence 49999999999999999999999999999999999999999999873
No 14
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=99.93 E-value=6.2e-26 Score=170.18 Aligned_cols=98 Identities=35% Similarity=0.514 Sum_probs=94.3
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
..++.|+.+|+++||+.|++|++|+||||.+||+|||+||+.|+..|+++|+
T Consensus 76 ~ll~~l~~~~~~~dA~~L~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~ 155 (315)
T 1dm5_A 76 AAALALLRKPDEFLAEQLHAAMKGLGTDKNALIDILCTQSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQ 155 (315)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHSSSCCHHHHHHHHSSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHccChhHHHHHHHHHHhhcCCCchhhhhhhHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHc
Confidence 4688999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHH
Q psy4859 56 -------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLL 98 (102)
Q Consensus 56 -------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll 98 (102)
+|+|+||+.||.+|+++|++.||++|+++|++++||+|+++|+
T Consensus 156 ~~r~~~~~vd~~~a~~dA~~L~~A~~~~~GTde~~lirIl~~Rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Ll 235 (315)
T 1dm5_A 156 GGRKEDEPVNAAHAAEDAAAIYQAGEGQIGTDESRFNAVLATRSYPQLHQIFHEYSKISNKTILQAIENEFSGDIKNGLL 235 (315)
T ss_dssp TCCCTTCCCCHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHSSSCHHHHHHHHCCHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhhCcCCCcHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCHHHHHhhhcCchHHHHHH
Confidence 3889999999999999999999999999999999999999999
Q ss_pred Hhh
Q psy4859 99 ALV 101 (102)
Q Consensus 99 ~l~ 101 (102)
+++
T Consensus 236 alv 238 (315)
T 1dm5_A 236 AIV 238 (315)
T ss_dssp HHH
T ss_pred HHH
Confidence 987
No 15
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=99.93 E-value=1.3e-25 Score=169.39 Aligned_cols=99 Identities=27% Similarity=0.479 Sum_probs=94.5
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
..++.|+.+|+++||..|++|++|+||||.++|+|||+||+.|+..|.++|+
T Consensus 85 ~ll~~l~~~~~~~DA~~L~~A~~g~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~yg~sLe~dI~~e~sG~~~~~L~~lv~ 164 (327)
T 1w3w_A 85 RLIVALMYPPYRYEAKELHDAMKGLGTKEGVIIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQ 164 (327)
T ss_dssp HHHHHHHSCTTHHHHHHHHHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHS
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCccHHHHHhhccCchHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999998
Q ss_pred --------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHH
Q psy4859 56 --------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLL 97 (102)
Q Consensus 56 --------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~l 97 (102)
+|+|+||+.||.+|+++|++.||++|+++|++++||||+++|
T Consensus 165 ~~r~~~~~~vd~~~a~~DA~~L~~A~~~~~GTde~~lirIl~tRs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~L 244 (327)
T 1w3w_A 165 GSRDDVSSFVDPALALQDAQDLYAAGEKIRGTDEMKFITILCTRSATHLLRVFEEYEKIANKSIEDSIKSETHGSLEEAM 244 (327)
T ss_dssp CCCCCCCSCCCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHH
T ss_pred hccCCcccccCHHHHHHHHHHHHHHhhCcCCCcHhHhhHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHhhhcCCcHHHHH
Confidence 288999999999999999999999999999999999999999
Q ss_pred HHhhC
Q psy4859 98 LALVA 102 (102)
Q Consensus 98 l~l~~ 102 (102)
+++++
T Consensus 245 lalv~ 249 (327)
T 1w3w_A 245 LTVVK 249 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99873
No 16
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=99.93 E-value=1.8e-25 Score=168.01 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=94.0
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
..++.|+.+|+++||..|++|++|+||||.++|+|||+||+.|+..|.++|+
T Consensus 80 ~ll~~l~~~~~~~dA~~l~~A~kg~Gtde~~lieIL~tRs~~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~~~L~~lv~ 159 (321)
T 1n00_A 80 RLVLLWALDPAERDALLANEATKRWTSSNQVLMEIACTRSANQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPLVS 159 (321)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHSSSCSSCHHHHHHHHSSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHhhccCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCccHHHHHHhccCcHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999998
Q ss_pred ------------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHH
Q psy4859 56 ------------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLA 99 (102)
Q Consensus 56 ------------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~ 99 (102)
+|+++||+.||.+|+++|++.||++|+++|++++||+|+++|++
T Consensus 160 ~~r~~~~~vd~~~~~~dA~~L~~A~~g~~gtde~lirIl~~Rs~~~L~~I~~~Y~~~yg~~L~~~I~~e~sGd~~~~Ll~ 239 (321)
T 1n00_A 160 SYRYEGEEVNMTLAKTEAKLLHEKISNKAYSDDDVIRVLATRSKAQINATLNHYKNEYGNDINKDLKADPKDEFLALLRS 239 (321)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHHHHTTCTTCHHHHHHHHHSCHHHHHHHHHHHHHHHSSCTTGGGCSSTTCHHHHHHHH
T ss_pred cccCCCcCCChhhhHHHHHHHHHHhhCcCCCcHHHHHHHHhCCHHHHHHHHHHHHHHhCccHHHHHhhhcCchHHHHHHH
Confidence 28899999999999999999999999999999999999999999
Q ss_pred hh
Q psy4859 100 LV 101 (102)
Q Consensus 100 l~ 101 (102)
++
T Consensus 240 iv 241 (321)
T 1n00_A 240 TV 241 (321)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 17
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=99.92 E-value=5.9e-25 Score=164.54 Aligned_cols=97 Identities=18% Similarity=0.209 Sum_probs=93.3
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.|+.+|+++||..|++||+|+ |||.+||+|||+|||.|+..|+++|+
T Consensus 67 ~~l~~l~~~p~~~DA~~L~~A~kg~-tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~l 145 (310)
T 2ii2_A 67 DVMALGWDCNISARVNVIKKAMKNV-NDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLA 145 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHSS-CCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHH
Confidence 5688999999999999999999998 99999999999999999999999997
Q ss_pred ----------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcC-chHHHHHHHHh
Q psy4859 56 ----------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDC-SGDYKRLLLAL 100 (102)
Q Consensus 56 ----------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~-sG~~~~~ll~l 100 (102)
+|+|+||+.|+.+|+++|++.||++|+++|++++ ||+|+++|+++
T Consensus 146 l~~~R~e~~~a~~DA~~L~~A~~~~~Gtde~~~i~Il~~Rs~~~L~~i~~~Y~~~~g~~l~~~I~~e~~sG~~~~~Ll~i 225 (310)
T 2ii2_A 146 IRENRTPRGSVASDAEVLKHNLIDADEPDHEAVVRLIITSTADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIA 225 (310)
T ss_dssp HHCCCCCCSCHHHHHHHHHHHHTTSSSCCHHHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCCcchHHHHHHHHHHHHhhcccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccHHHHHHHH
Confidence 3889999999999999999999999999999999 99999999988
Q ss_pred h
Q psy4859 101 V 101 (102)
Q Consensus 101 ~ 101 (102)
+
T Consensus 226 v 226 (310)
T 2ii2_A 226 H 226 (310)
T ss_dssp H
T ss_pred H
Confidence 6
No 18
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=99.92 E-value=7.7e-25 Score=165.79 Aligned_cols=98 Identities=20% Similarity=0.385 Sum_probs=93.2
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
.+++.++.+|+.+||+.|++||||.||||++||+|+|+|+|.|+..|+++|+
T Consensus 73 ~~l~~l~~~p~~~dA~~L~~AmkG~GTde~~LieIl~tRs~~~l~~Ik~~Y~~~y~~sL~~di~~~tsG~~~w~~lLl~l 152 (337)
T 3chj_A 73 SLVLMLYKPRAQLLCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKYMWAKLINAV 152 (337)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHHCSSSHHHHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHHhccCCCCChHHhhhhhhcCCHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCchHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999887
Q ss_pred --------------------------------------HHHhhCCHHHHHHHHHHHHHHhC-CcHHHHHhhcCchHHHHH
Q psy4859 56 --------------------------------------KLYVTRSEIDLGDIKQNFLKLYG-KTLEEYIKDDCSGDYKRL 96 (102)
Q Consensus 56 --------------------------------------~il~~rt~~~l~~ik~aY~~~yg-~~L~~~I~~e~sG~~~~~ 96 (102)
+|+|+|||+|+.+|+++|++.|| ++|+++|++++||+|+++
T Consensus 153 l~~~R~e~d~~~a~~DA~~L~~A~~~~gt~gtde~~~i~IL~~RS~~~L~~i~~~Y~~~~g~~~le~~I~~e~sG~~~~~ 232 (337)
T 3chj_A 153 ATGDRIPRDTHELEEDLVLVRKAIETKGVKKDEVSTWIRIFATYTRADFRQLHKMYSAKYNGDSLRAGVEDEFQGLDEYA 232 (337)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHHHSSSCCGGGHHHHHHHHHHCCHHHHHHHHHHHHHHTTTCCHHHHHHHHCCHHHHHH
T ss_pred HhcccCccchHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCCHHHHHHHhcCchHHHH
Confidence 28899999999999999999998 999999999999999999
Q ss_pred HHHhh
Q psy4859 97 LLALV 101 (102)
Q Consensus 97 ll~l~ 101 (102)
|++++
T Consensus 233 L~~~v 237 (337)
T 3chj_A 233 FKLAH 237 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 19
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=99.92 E-value=4.7e-25 Score=179.00 Aligned_cols=90 Identities=33% Similarity=0.624 Sum_probs=86.7
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
+|..||+.|++||||+||||++||+||++|++.|++.|+.+|+
T Consensus 363 ~~~~Da~~L~kA~kG~GtDE~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~i~~l~~~p~~~DA~~ 442 (672)
T 1m9i_A 363 NPDADAKALRKAMKGLGTDEDTIIDIITHRSNVQRQQIRQTFKSHFGRDLMTDLKSEISGDLARLILGLMMPPAHYDAKQ 442 (672)
T ss_dssp CHHHHHHHHHHHHSSSSCCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCTHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 5688999999999999999999999999999999999999998
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhhC
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALVA 102 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~~ 102 (102)
+|+|+|||+||.+|+++|+..||+||++||.+++||+|+++|++|++
T Consensus 443 l~~A~kg~gTde~~LiEIL~tRsn~ei~~ik~aY~~~y~~sLe~di~~dtsG~~~~llv~L~~ 505 (672)
T 1m9i_A 443 LKKAMEGAGTDEKALIEILATRTNAEIRAINEAYKEDYHKSLEDALSSDTSGHFRRILISLAT 505 (672)
T ss_dssp HHHHHSSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHhhhcCCHHHHHHHHHHHHHHHCcCHHHHHHhccchHHHHHHHHHHh
Confidence 49999999999999999999999999999999999999999999874
No 20
>1m9i_A Annexin VI; calcium-binding, membrane-binding, phosphorylation, mutant T356D, lipid binding protein; 2.65A {Homo sapiens} SCOP: a.65.1.1 a.65.1.1 PDB: 1avc_A
Probab=99.92 E-value=9.9e-25 Score=177.09 Aligned_cols=89 Identities=25% Similarity=0.475 Sum_probs=86.2
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
+|..||+.|++||||+||||++||+||++|++.|++.|..+|+
T Consensus 20 ~~~~Da~~L~kA~kG~GtDE~~iI~IL~~rs~~QR~~I~~~Y~~~~gkdL~~~LkselsG~fe~~l~~l~~~p~~~dA~~ 99 (672)
T 1m9i_A 20 DPNQDAEALYTAMKGFGSDKEAILDIITSRSNRQRQEVCQSYKSLYGKDLIADLKYELTGKFERLIVGLMRPPAYCDAKE 99 (672)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHcCCHHHHHHHH
Confidence 5788999999999999999999999999999999999999998
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhh
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALV 101 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~ 101 (102)
+|+|+|||+||.+|+++|+..||+||+++|.+++||+|+++|++|+
T Consensus 100 l~~A~kG~gTde~~LiEIl~tRsn~ei~~ik~aY~~~y~~sLe~di~~dtsG~f~klLv~L~ 161 (672)
T 1m9i_A 100 IKDAISGIGTDEKCLIEILASRTNEQMHQLVAAYKDAYERDLEADIIGDTSGHFQKMLVVLL 161 (672)
T ss_dssp HHHHHSSSSCCHHHHHHHHHHCCHHHHHHHHHHHHHHSCSCHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHcCCHHHHHHHHHHHHHHhCcchHHHHhccCCccHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999987
No 21
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=99.92 E-value=2.6e-24 Score=159.96 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=92.7
Q ss_pred HHHHHhccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH----------------------------
Q psy4859 4 SYVVQCVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL---------------------------- 55 (102)
Q Consensus 4 ~~~v~~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~---------------------------- 55 (102)
..++.|+.+|+++||..|++|++|. |||.+||+|||+||+.|+..|+++|+
T Consensus 65 ~~l~~l~~~~~~~dA~~L~~A~kg~-tde~~lieIL~~Rs~~~l~~I~~~Y~~~y~~~Le~di~~e~~~sG~~~~~L~~l 143 (295)
T 4evf_A 65 SLLMDLFSDRHEVRAQHIRDALSGR-NDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGRKEDWCLLMEKW 143 (295)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHSS-CCHHHHHHHHTSCCHHHHHHHHHHHHHHHSSCHHHHHHHHHCSSSHHHHHHHHH
T ss_pred HHHHHHccCchHHHHHHHHHHhhCC-CCHHHHHHHHHcCCHHHHHHHHHHHHHhccccHHHHHHhhcccCCcHHHHHHHH
Confidence 4688999999999999999999998 99999999999999999999999986
Q ss_pred --------------------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHHhh
Q psy4859 56 --------------------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLALV 101 (102)
Q Consensus 56 --------------------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~l~ 101 (102)
+|+|+||+.||.+|+++|++.||++|+++|++++||+|+++|++++
T Consensus 144 l~~~r~e~~~~~~~dA~~L~~A~~~tde~~li~Il~tRs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Ll~iv 221 (295)
T 4evf_A 144 MAHERVSRPGSPEDEAQRLDQAFDQKNTAYLIDFFGTVPSAEYRPIAEAFKAQNGKSIEQAIATIYTKTDYYTFYCAH 221 (295)
T ss_dssp HHTCCCCCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHSSSCHHHHHHHHCCHHHHHHHHHHH
T ss_pred HhcccccCchHHHHHHHHHHHhccCCCHHHHhHHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHcChHHHHHHHHHH
Confidence 2789999999999999999999999999999999999999999986
No 22
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=99.91 E-value=2e-24 Score=160.57 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=85.0
Q ss_pred cCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-----------------------------------
Q psy4859 11 KDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL----------------------------------- 55 (102)
Q Consensus 11 ~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~----------------------------------- 55 (102)
+|+|..||+.|++|||| |||++||+||++|||.|++.|+.+|+
T Consensus 1 ~~~~~~da~~L~~A~kG--tde~~li~IL~~rs~~qr~~I~~~Y~~~yg~~L~~~lk~el~sG~f~~~l~~l~~~~~~~d 78 (295)
T 4evf_A 1 MPKVTDIANELKQAIDA--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVR 78 (295)
T ss_dssp -CCHHHHHHHHHHHHHT--TCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSHHHHHHHHHTSCHHHHH
T ss_pred CCCHHHHHHHHHHHHcC--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHCcCHHHHHHhhccCCCHHHHHHHHccCchHHH
Confidence 47899999999999996 99999999999999999999999997
Q ss_pred ------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcC--chHHHHHHHHhh
Q psy4859 56 ------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDC--SGDYKRLLLALV 101 (102)
Q Consensus 56 ------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~--sG~~~~~ll~l~ 101 (102)
+|+|+|||+|+.+|+++|++.||++|+++|++++ ||+|+++|++++
T Consensus 79 A~~L~~A~kg~tde~~lieIL~~Rs~~~l~~I~~~Y~~~y~~~Le~di~~e~~~sG~~~~~L~~ll 144 (295)
T 4evf_A 79 AQHIRDALSGRNDHMAFFDTVILCTPEDWHETVAAYTRMFKKPLVEDFMKDVGRKEDWCLLMEKWM 144 (295)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHTSCCHHHHHHHHHHHHHHHSSCHHHHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHHHHHHHHHcCCHHHHHHHHHHHHHhccccHHHHHHhhcccCCcHHHHHHHHH
Confidence 3889999999999999999999999999999999 999999999986
No 23
>3chj_A Alpha-14 giardin; calcium-binding, annexin, metal binding protein; 1.60A {Giardia lamblia} PDB: 3chk_A 3chl_A
Probab=99.88 E-value=7.7e-23 Score=154.83 Aligned_cols=92 Identities=18% Similarity=0.398 Sum_probs=84.7
Q ss_pred hccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH---------------------------------
Q psy4859 9 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL--------------------------------- 55 (102)
Q Consensus 9 ~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~--------------------------------- 55 (102)
++.++.+.||+.|++||+|+ +||+++|+||++||+.|+..|..+|+
T Consensus 7 ~~~~~v~~da~~L~kA~kg~-~de~~ii~IL~~rs~~Qr~~i~~~Y~~~~g~dL~~~lk~e~sG~fe~~l~~l~~~p~~~ 85 (337)
T 3chj_A 7 QMSTGVTAVVQKVVEACQDE-SKRLDLIEIARSYPPNQLRNMQRTFQAITGTFLDAFLKKHLSKDFESLVLMLYKPRAQL 85 (337)
T ss_dssp ----CHHHHHHHHHHHHHCG-GGTTHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHTTSCHHHHHHHHHHTSCHHHH
T ss_pred ccCchHHHHHHHHHHHhCCC-CCHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHHhcCccHHHHHHHHhCChHHH
Confidence 45678889999999999998 79999999999999999999999998
Q ss_pred --------------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCchHH--HHHHHHhh
Q psy4859 56 --------------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDY--KRLLLALV 101 (102)
Q Consensus 56 --------------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~--~~~ll~l~ 101 (102)
+|+|+|||.|+..|+++|+++||++|+++|++++||+| +++|++++
T Consensus 86 dA~~L~~AmkG~GTde~~LieIl~tRs~~~l~~Ik~~Y~~~y~~sL~~di~~~tsG~~~w~~lLl~ll 153 (337)
T 3chj_A 86 LCELIRGATKGAGTDEKCLVDVLLTIETHEVREIRQLYYQLYNDSLGDVVRKDCGDKYMWAKLINAVA 153 (337)
T ss_dssp HHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCChHHhhhhhhcCCHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCchHHHHHHHHH
Confidence 48999999999999999999999999999999999999 99999965
No 24
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=99.88 E-value=1.9e-22 Score=150.89 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=81.9
Q ss_pred chHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH-------------------------------------
Q psy4859 13 KSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL------------------------------------- 55 (102)
Q Consensus 13 ~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~------------------------------------- 55 (102)
++..||+.|++||+|+ ||++||+||++|++.|++.|+.+|+
T Consensus 5 ~~~~~a~~L~kA~kG~--de~~lI~IL~~rs~~qr~~I~~~Y~~~yg~dL~~~lksel~sG~fe~~l~~l~~~p~~~DA~ 82 (310)
T 2ii2_A 5 SYGDAIPEVKAILEAK--NEEELVTFTSRWSAEERKELRTQFQDTTGLEFIAFLKKCIKNGPYEDVMALGWDCNISARVN 82 (310)
T ss_dssp -CTTHHHHHHHHHHTT--CHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCSSHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHCccHHHHHHHhcCCCCHHHHHHHHhCCHHHHHHH
Confidence 4557899999999974 9999999999999999999999997
Q ss_pred ----------------HHHhhCCHHHHHHHHHHHHHHhCCcHHHHHhhcCch--HHHHHHHHhh
Q psy4859 56 ----------------KLYVTRSEIDLGDIKQNFLKLYGKTLEEYIKDDCSG--DYKRLLLALV 101 (102)
Q Consensus 56 ----------------~il~~rt~~~l~~ik~aY~~~yg~~L~~~I~~e~sG--~~~~~ll~l~ 101 (102)
+|+|+|||+|+.+|+++|++.||++|+++|++++|| +|+++|++++
T Consensus 83 ~L~~A~kg~tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~ll 146 (310)
T 2ii2_A 83 VIKKAMKNVNDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAI 146 (310)
T ss_dssp HHHHHHHSSCCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHHH
T ss_pred HHHHHhhCCCcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHHH
Confidence 489999999999999999999999999999999999 9999999986
No 25
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=63.31 E-value=24 Score=21.94 Aligned_cols=63 Identities=22% Similarity=0.425 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhcCCCCC-HHHHHHHHhhCChhhHHHHHHHHH--------------------HHHhhCCHHHHHHHHHH
Q psy4859 14 SSYLARRLKDAMAGIGTD-DKTLIRIIVTRSEIDLGDIKQNFL--------------------KLYVTRSEIDLGDIKQN 72 (102)
Q Consensus 14 ~~~da~~L~~A~kg~gtd-e~~Li~il~~rs~~~l~~i~~~y~--------------------~il~~rt~~~l~~ik~a 72 (102)
.+-.+..|..|+.|-+.| |..=.+||.. -+.++..++...+ +++..|+..+|..|++.
T Consensus 18 Le~Eta~L~~al~~edsd~E~~~~rilhd-l~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~ 96 (101)
T 4aj5_1 18 LDCETARLQRALDGEESDFEDYPMRILYD-LHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREY 96 (101)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccchhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677889999986653 4444455542 3345555554332 48999999999999987
Q ss_pred HHHHhC
Q psy4859 73 FLKLYG 78 (102)
Q Consensus 73 Y~~~yg 78 (102)
|+ +||
T Consensus 97 fq-KYG 101 (101)
T 4aj5_1 97 FQ-KYG 101 (101)
T ss_dssp HH-HC-
T ss_pred HH-HcC
Confidence 75 444
No 26
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=59.48 E-value=24 Score=20.70 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=30.2
Q ss_pred HHHHHHhhCChhhHHHHHHHHHHHH-------hhCCHHHHHHHHHHHHHH
Q psy4859 34 TLIRIIVTRSEIDLGDIKQNFLKLY-------VTRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 34 ~Li~il~~rs~~~l~~i~~~y~~il-------~~rt~~~l~~ik~aY~~~ 76 (102)
..-+||.-........|+.+|.++. ..-+++.++.|.+||+.+
T Consensus 9 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L 58 (92)
T 2o37_A 9 KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEIL 58 (92)
T ss_dssp HHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHH
Confidence 3445666555677788888998644 234677889999999754
No 27
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=53.99 E-value=29 Score=19.91 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHhhCCh--hhHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHH
Q psy4859 35 LIRIIVTRSE--IDLGDIKQNFLKLYV------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 35 Li~il~~rs~--~~l~~i~~~y~~il~------~rt~~~l~~ik~aY~~~ 76 (102)
..+||.-... .....|+.+|.++.- +-+++.++.|.+||+.+
T Consensus 13 ~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L 62 (79)
T 1faf_A 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTF 62 (79)
T ss_dssp HHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHH
Confidence 3455554444 667888999986552 45788899999999754
No 28
>3ks4_A Polymerase cofactor VP35; RNA-binding protein, protein-RNA complex, interferon, HOST cytoplasm, interferon antiviral system evasion; 2.40A {Reston ebolavirus} PDB: 3ks8_A
Probab=45.20 E-value=48 Score=22.41 Aligned_cols=56 Identities=20% Similarity=0.249 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHh--hCChhhHHHHHHHHHHHHhhCCHHHHHHH
Q psy4859 14 SSYLARRLKDAMAGIGTDDKTLIRIIV--TRSEIDLGDIKQNFLKLYVTRSEIDLGDI 69 (102)
Q Consensus 14 ~~~da~~L~~A~kg~gtde~~Li~il~--~rs~~~l~~i~~~y~~il~~rt~~~l~~i 69 (102)
+...++.|+.-+-|.||.-..|..++| ++++..++.+...|+..|.--.++|-..|
T Consensus 65 akdl~~il~~HLpG~~TaFHqLvqvI~kvgkD~~~Ldi~h~eFqa~LaeGdS~q~AlI 122 (184)
T 3ks4_A 65 AKDLKEIMYDHLPGFGTAFHQLVQVICKIGKDNNLLDTIHAEFQASLADGDSPQCALI 122 (184)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHccchhHHHHHHHHHHHHHhcCCCcchhHH
Confidence 556677888888899998877777755 57788888888888877665555554443
No 29
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=43.84 E-value=76 Score=21.80 Aligned_cols=65 Identities=15% Similarity=0.314 Sum_probs=42.1
Q ss_pred hccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHHH--------------HHhhC-----CHHHHHHH
Q psy4859 9 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLK--------------LYVTR-----SEIDLGDI 69 (102)
Q Consensus 9 ~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~~--------------il~~r-----t~~~l~~i 69 (102)
.+.+.|..-|..|+.. .|.+...+-+.|+.+.+... .+..+|-+ .++.+ -..++.+|
T Consensus 39 ~l~~~p~~iA~fL~~~---~~l~k~~igeyLg~~~~~n~-~vl~~y~~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRi 114 (203)
T 1r8s_E 39 LLQNTPEEIARFLYKG---EGLNKTAIGDYLGEREELNL-AVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRM 114 (203)
T ss_dssp SSCSSHHHHHHHHHHC---TTCCHHHHHHHHTCCSHHHH-HHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC---cCcCHHHHHHHHhccchHHH-HHHHHHHHhcCCCCCcHHHHHHHHHHhccCCCchHHHHHH
Confidence 3456777778888764 46899999999998775554 44455542 22322 33567777
Q ss_pred HHHHHHHh
Q psy4859 70 KQNFLKLY 77 (102)
Q Consensus 70 k~aY~~~y 77 (102)
-++|.+.|
T Consensus 115 le~Fa~ry 122 (203)
T 1r8s_E 115 MEAFAQRY 122 (203)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777666
No 30
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=42.23 E-value=50 Score=21.11 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHh--hCChhhHHHHHHHHHHHHhhCCHHHHHHHH
Q psy4859 14 SSYLARRLKDAMAGIGTDDKTLIRIIV--TRSEIDLGDIKQNFLKLYVTRSEIDLGDIK 70 (102)
Q Consensus 14 ~~~da~~L~~A~kg~gtde~~Li~il~--~rs~~~l~~i~~~y~~il~~rt~~~l~~ik 70 (102)
+.-.++.|+.-+-|.||.-..|..++| ++++..++.+...|+..|.--.++|-..|+
T Consensus 10 akdl~~il~~hLpG~~TaFH~Lvqvi~kvgkd~~~Ld~~h~~F~~~L~eG~s~q~Ali~ 68 (129)
T 3fke_A 10 AKDLRNIMYDHLPGFGTAFHQLVQVICKLGKDSNSLDIIHAEFQASLAEGDSPQCALIQ 68 (129)
T ss_dssp HHHHHHHHHTTSSSSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHccchhHHHHHHHHHHHHHhcCCCcchhHHH
Confidence 445677888888999998888887765 578889999888888777666666655443
No 31
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=40.66 E-value=55 Score=19.24 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHhhCChhhHHHHHHHHHHHHh------hC-----CHHHHHHHHHHHHHH
Q psy4859 28 IGTDDKTLIRIIVTRSEIDLGDIKQNFLKLYV------TR-----SEIDLGDIKQNFLKL 76 (102)
Q Consensus 28 ~gtde~~Li~il~~rs~~~l~~i~~~y~~il~------~r-----t~~~l~~ik~aY~~~ 76 (102)
.+.+..-+.+||.-........|+.+|.++.- .. ..+.++.|.+||+.+
T Consensus 11 ~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL 70 (88)
T 1iur_A 11 RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70 (88)
T ss_dssp SSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 34456677788887777888899999987552 11 246788899999754
No 32
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=39.84 E-value=1e+02 Score=22.39 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=29.3
Q ss_pred hccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHH
Q psy4859 9 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFL 55 (102)
Q Consensus 9 ~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~ 55 (102)
.+.+.|..-|..|+.. .|.|...+-+.|+.+.+... .+..+|-
T Consensus 41 ~~~~~~~~ia~fl~~~---~~l~k~~ig~~l~~~~~~~~-~vl~~~~ 83 (347)
T 2r09_A 41 LLQSSPEDVAQFLYKG---EGLNKTVIGDYLGERDDFNI-KVLQAFV 83 (347)
T ss_dssp SSCCSHHHHHHHHHHC---TTCCHHHHHHHHHCCSHHHH-HHHHHHH
T ss_pred CCCCCHHHHHHHHHhC---cCcCHHHHHHHhcCCCchHH-HHHHHHH
Confidence 3456677778888763 46899999999998765554 4344443
No 33
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=38.13 E-value=22 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHHHhhcCch
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEYIKDDCSG 91 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~I~~e~sG 91 (102)
.=.|+..|++-+..+||+++.....+...|
T Consensus 115 elpEL~~ir~~l~~KyGkeF~~~a~e~~~~ 144 (191)
T 3frr_A 115 EVAELKIVADQLCAKYSKEYGKLCRTNQIG 144 (191)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHHHHHTTTTS
T ss_pred cChHHHHHHHHHHHHhCHHHHHHHHHcCCC
Confidence 456999999999999999999887765433
No 34
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=37.97 E-value=52 Score=18.17 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=26.6
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHh-------hCCHHHHHHHHHHHHHH
Q psy4859 36 IRIIVTRSEIDLGDIKQNFLKLYV-------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 36 i~il~~rs~~~l~~i~~~y~~il~-------~rt~~~l~~ik~aY~~~ 76 (102)
-+||.-........|+.+|.++.- .-..+.+..|.+||+.+
T Consensus 11 y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L 58 (73)
T 2och_A 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVL 58 (73)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHH
Confidence 345554555677778888876442 22357788888888754
No 35
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.25 E-value=48 Score=18.55 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=26.4
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHh
Q psy4859 36 IRIIVTRSEIDLGDIKQNFLKLYVT---------RSEIDLGDIKQNFLKLY 77 (102)
Q Consensus 36 i~il~~rs~~~l~~i~~~y~~il~~---------rt~~~l~~ik~aY~~~y 77 (102)
-+||.-........|+.+|.++... ...+.+..|.+||+.+-
T Consensus 10 y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~ 60 (78)
T 2ctp_A 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLS 60 (78)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHC
Confidence 3455555556677788888765421 13457778888887553
No 36
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}
Probab=36.98 E-value=28 Score=24.79 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHhC------CcHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLYG------KTLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg------~~L~~~I~ 86 (102)
+++++.+++++|+..|. .++++.++
T Consensus 232 ~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~ 262 (305)
T 3t57_A 232 TMSEMKSLRAAYRKIFMSTETVSLSFEERLT 262 (305)
T ss_dssp CHHHHHHHHHHHHHHHCCTTSSTTCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccccCCCHHHHHH
Confidence 55666668888888886 45666543
No 37
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=36.49 E-value=41 Score=23.21 Aligned_cols=26 Identities=12% Similarity=0.266 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHHHhCC--cHHHHHhh
Q psy4859 62 SEIDLGDIKQNFLKLYGK--TLEEYIKD 87 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~--~L~~~I~~ 87 (102)
+++++..++++|+..|.. ++++.++.
T Consensus 210 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (265)
T 4e6u_A 210 SKNTIQGLREAYKLIFKSGLTSVQAIDQ 237 (265)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 455666688888888743 56666543
No 38
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.82 E-value=62 Score=18.81 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHh---------hCCHHHHHHHHHHHHHH
Q psy4859 36 IRIIVTRSEIDLGDIKQNFLKLYV---------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 36 i~il~~rs~~~l~~i~~~y~~il~---------~rt~~~l~~ik~aY~~~ 76 (102)
-+||.-........|+.+|.++.- ....+.++.|.+||+.+
T Consensus 30 y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L 79 (90)
T 2ys8_A 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79 (90)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHH
Confidence 445554556677788888886442 23466788888888653
No 39
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=34.41 E-value=72 Score=18.95 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHH----HhCCcHHHHHhhcCchHHHH
Q psy4859 62 SEIDLGDIKQNFLK----LYGKTLEEYIKDDCSGDYKR 95 (102)
Q Consensus 62 t~~~l~~ik~aY~~----~yg~~L~~~I~~e~sG~~~~ 95 (102)
+++++.+++.+|.. ....+|.+-|...+.+.-++
T Consensus 17 ~~e~~~rvRaA~lat~~~eg~~slS~Fi~aAv~~ev~r 54 (80)
T 3no7_A 17 GEERRARLRTAYTLTHLQEGHRTFSGFIAAALDAEVQR 54 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHH
Confidence 56777779999873 46788888888777666555
No 40
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=33.71 E-value=54 Score=21.77 Aligned_cols=31 Identities=6% Similarity=0.363 Sum_probs=27.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHhCCcHH
Q psy4859 52 QNFLKLYVTRSEIDLGDIKQNFLKLYGKTLE 82 (102)
Q Consensus 52 ~~y~~il~~rt~~~l~~ik~aY~~~yg~~L~ 82 (102)
..|+++...+|.+++..++..-..+||.--.
T Consensus 32 ~lYkria~~~~~eel~~l~~EL~DRFG~lP~ 62 (173)
T 2qsr_A 32 EIYKKIRQIDNRVNYEELQEELIDRFGEYPD 62 (173)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCCCcH
Confidence 4688999999999999999999999997543
No 41
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=33.53 E-value=64 Score=17.89 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=31.5
Q ss_pred HHHHHHHhhCC-hhhHHHHHHHHHHHHh------hCCHHHHHHHHHHHHHH
Q psy4859 33 KTLIRIIVTRS-EIDLGDIKQNFLKLYV------TRSEIDLGDIKQNFLKL 76 (102)
Q Consensus 33 ~~Li~il~~rs-~~~l~~i~~~y~~il~------~rt~~~l~~ik~aY~~~ 76 (102)
.-.-+||.-.. ......|+.+|.++.- +-++..+..|.+||+..
T Consensus 14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L 64 (71)
T 2guz_A 14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFL 64 (71)
T ss_dssp HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Confidence 34456665444 5778889999986552 56788899999999754
No 42
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=33.24 E-value=65 Score=17.90 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=23.2
Q ss_pred HHhhCChhhHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHH
Q psy4859 38 IIVTRSEIDLGDIKQNFLKLYVT---------RSEIDLGDIKQNFLKL 76 (102)
Q Consensus 38 il~~rs~~~l~~i~~~y~~il~~---------rt~~~l~~ik~aY~~~ 76 (102)
||.-........|+.+|.++.-. .....+..|.+||+.+
T Consensus 8 iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L 55 (77)
T 1hdj_A 8 TLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55 (77)
T ss_dssp HHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHH
Confidence 33333445666777777764421 1346677888888754
No 43
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=32.94 E-value=51 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHh--CCcHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLY--GKTLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~y--g~~L~~~I~ 86 (102)
+++++..++++|+..| +.+|++.++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 229 (270)
T 1j2z_A 203 ESKDIDFIYALYKRLFRPIPSLRESAK 229 (270)
T ss_dssp CHHHHHHHHHHHHHHTCSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 5556666888998888 677777764
No 44
>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B
Probab=32.03 E-value=89 Score=19.12 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=23.2
Q ss_pred HHHHHHHhhcCCCCCH--HHHHHHHhhCCh-hhHHHHHHHHHHHH-----------hhC---CHHHHHHHHHHHHHHhCC
Q psy4859 17 LARRLKDAMAGIGTDD--KTLIRIIVTRSE-IDLGDIKQNFLKLY-----------VTR---SEIDLGDIKQNFLKLYGK 79 (102)
Q Consensus 17 da~~L~~A~kg~gtde--~~Li~il~~rs~-~~l~~i~~~y~~il-----------~~r---t~~~l~~ik~aY~~~yg~ 79 (102)
-...+.+.+++ +.++ .-++.+++.+.. ..+..|-..|.+++ ++- |++|..+|.+..+++||+
T Consensus 56 K~~~l~~~~~~-~~~~~~~nfl~ll~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~gk 134 (134)
T 1abv_A 56 LAESFIAVCGE-QLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRLSR 134 (134)
T ss_dssp HHHHHHHHHCS-CCCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHC-----------------------------
T ss_pred HHHHHHHHHhc-cCCHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHhCc
Confidence 34555566654 4454 345566666544 46667777776422 111 678888888888888774
No 45
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=31.84 E-value=75 Score=18.23 Aligned_cols=43 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred HHHHHhhCChhhHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHh
Q psy4859 35 LIRIIVTRSEIDLGDIKQNFLKLYVT---------RSEIDLGDIKQNFLKLY 77 (102)
Q Consensus 35 Li~il~~rs~~~l~~i~~~y~~il~~---------rt~~~l~~ik~aY~~~y 77 (102)
.-+||.-........|+.+|.++.-. ...+.++.|.+||+.+-
T Consensus 19 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~ 70 (88)
T 2cug_A 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILS 70 (88)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHC
Confidence 44566555667778888899865421 23467888999997654
No 46
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=30.95 E-value=1.3e+02 Score=20.75 Aligned_cols=65 Identities=8% Similarity=0.223 Sum_probs=43.4
Q ss_pred hccCchHHHHHHHHHhhcCCCCCHHHHHHHHhhCChhhHHHHHHHHHH--------------HHhhC-----CHHHHHHH
Q psy4859 9 CVKDKSSYLARRLKDAMAGIGTDDKTLIRIIVTRSEIDLGDIKQNFLK--------------LYVTR-----SEIDLGDI 69 (102)
Q Consensus 9 ~~~~~~~~da~~L~~A~kg~gtde~~Li~il~~rs~~~l~~i~~~y~~--------------il~~r-----t~~~l~~i 69 (102)
.+.++|..-|.-|+. ..|.|...+-+.|+.+.+.. ..+..+|-+ .++.+ -..++.+|
T Consensus 45 ~i~~~p~~iA~FL~~---~~~L~k~~igeyLg~~~~fn-~~vL~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRi 120 (211)
T 3ltl_A 45 MLGTTPEDIAQFLHQ---EERLDSTQVGEFLGDNDKFN-KEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRL 120 (211)
T ss_dssp SSCSSHHHHHHHHHH---CTTSCHHHHHHHHTCCSHHH-HHHHHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHH
T ss_pred CCCCCHHHHHHHHHh---CcCccHHHHHHHHhccchhH-HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHH
Confidence 345677777888875 35689999999999876544 345556652 33322 34578888
Q ss_pred HHHHHHHh
Q psy4859 70 KQNFLKLY 77 (102)
Q Consensus 70 k~aY~~~y 77 (102)
-++|.+.|
T Consensus 121 le~Fa~ry 128 (211)
T 3ltl_A 121 MEKFAARY 128 (211)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888777
No 47
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=29.51 E-value=73 Score=24.73 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=48.8
Q ss_pred HHHHhccCchHHHHHHHH-HhhcCCCC--CHHHHHHHHhhCCh--hh-HHHHHHHHHHHHhhCCHHHHHHHHHHHH--HH
Q psy4859 5 YVVQCVKDKSSYLARRLK-DAMAGIGT--DDKTLIRIIVTRSE--ID-LGDIKQNFLKLYVTRSEIDLGDIKQNFL--KL 76 (102)
Q Consensus 5 ~~v~~~~~~~~~da~~L~-~A~kg~gt--de~~Li~il~~rs~--~~-l~~i~~~y~~il~~rt~~~l~~ik~aY~--~~ 76 (102)
.+..++...|++-++.+. =+-.|... +...+.-.+|++.+ .. .....+.|.+ +-|+|.|+..+-+.|+ +.
T Consensus 71 ~v~~l~~~dp~~~~~~~~~~~r~~~~~r~~~~l~~lal~~~~~~~~~~r~~~~~~~~~--vv~~~~~l~~f~~~~~~~~~ 148 (535)
T 2nvo_A 71 FVRELVQRDAALALRVTLDVVRGQRAPKADPALLVLALIAKTAPNAADRKAAWDALPE--VARTGTMLLHFLAFADALGG 148 (535)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTCCSCSHHHHHHHHHHHHHCSSHHHHHHHHHHHHH--HCCSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhChHHHHHHHHHHHhcCCCCCCchHHHHHHHHhcCcchhhHHHHHHHHHHH--HHCCcchHHHHHHHHHHhcc
Confidence 344555557777777776 34455543 33444555666543 23 3333333333 2478888888888887 45
Q ss_pred hCCcHHHHHhhcC
Q psy4859 77 YGKTLEEYIKDDC 89 (102)
Q Consensus 77 yg~~L~~~I~~e~ 89 (102)
+|+.+.+.|..-.
T Consensus 149 ~gr~lr~av~~wy 161 (535)
T 2nvo_A 149 WGRLTRRGVANVY 161 (535)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 7778877777654
No 48
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=29.06 E-value=63 Score=22.57 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHHhCC--cHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLYGK--TLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~--~L~~~I~ 86 (102)
+++++..++++|+..|.. ++++.++
T Consensus 225 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 251 (283)
T 4eqy_A 225 SPDAISALRSAYRILYKNSLSLEEAKV 251 (283)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455555688888877743 4565553
No 49
>2z16_A Matrix protein 1, M1; AIV-7M1, H5N1, structural genomics; 2.02A {Influenza a virus} PDB: 3md2_A 1ea3_A 1aa7_A
Probab=27.98 E-value=58 Score=21.61 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHhhC
Q psy4859 14 SSYLARRLKDAMAGIGTDDKTLIRIIVTR 42 (102)
Q Consensus 14 ~~~da~~L~~A~kg~gtde~~Li~il~~r 42 (102)
...-++.|+.-+.|..||=+++.++|-+|
T Consensus 28 kaeia~~l~~~f~gkntDLealmEWlk~r 56 (165)
T 2z16_A 28 KAEIAQKLEDVFAGKNTDLEALMEWLKTR 56 (165)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcccccCHHHHHHHHhcC
Confidence 34568999999999999999999999887
No 50
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.38 E-value=97 Score=17.73 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=28.4
Q ss_pred HHHHHhhCChhhHHHHHHHHHHHHhh---------CCHHHHHHHHHHHHHHhC
Q psy4859 35 LIRIIVTRSEIDLGDIKQNFLKLYVT---------RSEIDLGDIKQNFLKLYG 78 (102)
Q Consensus 35 Li~il~~rs~~~l~~i~~~y~~il~~---------rt~~~l~~ik~aY~~~yg 78 (102)
.-+||.-........|+.+|.++.-. ...+.+..|.+||+.+-.
T Consensus 9 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d 61 (88)
T 2ctr_A 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSD 61 (88)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCC
Confidence 34555555567777888888865421 124578889999986543
No 51
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=25.60 E-value=30 Score=23.79 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHHHhhcCch
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEYIKDDCSG 91 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~I~~e~sG 91 (102)
.=.|+..+++-+..+||+++.....+.-.|
T Consensus 121 elpEL~~ir~~l~~KyGkeF~~~a~en~~g 150 (193)
T 3ggy_A 121 EVKELSQLKDLMAWKINVEFVNGVIADHID 150 (193)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHCTT
T ss_pred CChHHHHHHHHHHHHhCHHHHHHHHhcCCC
Confidence 445788899999999999998877654444
No 52
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=25.19 E-value=84 Score=21.68 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHHhC-CcHHHHH
Q psy4859 62 SEIDLGDIKQNFLKLYG-KTLEEYI 85 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg-~~L~~~I 85 (102)
+++++..++++|+..|. .++++.+
T Consensus 207 ~~~~~~~l~~~~~~l~~~~~~~~~~ 231 (266)
T 3r0s_A 207 DKDEVDRLSRAFKTLFRQGDLKENA 231 (266)
T ss_dssp CHHHHHHHHHHHHHHHSSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCcHHHHH
Confidence 34444457777777765 3444444
No 53
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=24.06 E-value=92 Score=21.30 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHhCC--cHHHHHh
Q psy4859 62 SEIDLGDIKQNFLKLYGK--TLEEYIK 86 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~--~L~~~I~ 86 (102)
+++++..++++|+..|.. ++.+.++
T Consensus 203 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 229 (259)
T 3hsq_A 203 SPEVRNAIKHAYKVIYHSGISTRKALD 229 (259)
T ss_dssp CHHHHHHHHHHHHHHHSSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 556666688898888854 4666654
No 54
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=22.72 E-value=1.7e+02 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=15.1
Q ss_pred ccCchHHHHHHHHH-hhcCCC-CCH
Q psy4859 10 VKDKSSYLARRLKD-AMAGIG-TDD 32 (102)
Q Consensus 10 ~~~~~~~da~~L~~-A~kg~g-tde 32 (102)
+.++|+.-...+++ |+-|.+ ||+
T Consensus 281 L~D~p~~i~kKI~k~A~t~g~~Td~ 305 (386)
T 3hzr_A 281 LSDNAKQVERKINKLAFSGGRNTTE 305 (386)
T ss_dssp TTCCHHHHHHHHHHTSCCCCCSSHH
T ss_pred cCCCHHHHHHHHHHhccCCCCCCcc
Confidence 44667777788888 776654 444
No 55
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=20.82 E-value=78 Score=19.54 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.7
Q ss_pred HhhCCHHHHHHHHHHHHHHh
Q psy4859 58 YVTRSEIDLGDIKQNFLKLY 77 (102)
Q Consensus 58 l~~rt~~~l~~ik~aY~~~y 77 (102)
++-||.+|++++-..|...+
T Consensus 68 ITVRSDeE~kAMlsyy~~~~ 87 (106)
T 2npt_A 68 ITVRSDEEMKAMLSYYYSTV 87 (106)
T ss_dssp EEECSHHHHHHHHHHHHHHH
T ss_pred eEEcchHHHHHHHHHHHHHH
Confidence 36788888888999887654
No 56
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.45 E-value=1.2e+02 Score=16.73 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=26.4
Q ss_pred HHHHhhCChhhHHHHHHHHHHHHhh----------CCHHHHHHHHHHHHHHh
Q psy4859 36 IRIIVTRSEIDLGDIKQNFLKLYVT----------RSEIDLGDIKQNFLKLY 77 (102)
Q Consensus 36 i~il~~rs~~~l~~i~~~y~~il~~----------rt~~~l~~ik~aY~~~y 77 (102)
-+||.-........|+.+|.++.-. .....+..|.+||+.+-
T Consensus 10 y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~ 61 (79)
T 2dn9_A 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLS 61 (79)
T ss_dssp HHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3455545566777888888765421 12357788888887553
No 57
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding protein, lipid binding protein; HET: PLM; 2.04A {Streptococcus mutans}
Probab=20.38 E-value=36 Score=24.93 Aligned_cols=38 Identities=13% Similarity=0.029 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHhCCcHHHHHhhcCchHHHHHHHH
Q psy4859 62 SEIDLGDIKQNFLKLYGKTLEEYIKDDCSGDYKRLLLA 99 (102)
Q Consensus 62 t~~~l~~ik~aY~~~yg~~L~~~I~~e~sG~~~~~ll~ 99 (102)
||.++..+.+.+.+.+..-+.=.|.+.+||.|+.+..+
T Consensus 100 s~~~~~~~f~~l~~~g~~Ii~I~iSS~LSGTy~sA~~A 137 (320)
T 3pl5_A 100 NVGQFESYFRQSAENGQEVLYIAFSSVLSGTYQSAVMA 137 (320)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCeEEEEecCchHhHHHHHHHHH
Confidence 34444446665555555555566788899999988664
Done!