BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4860
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GHN|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
           Human Adamts13 (Form-2)
          Length = 419

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 9   GCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLT-VSEM 67
           GCDG + S++  DRC VCGGDNS+C    G FT          +T  P    NLT V   
Sbjct: 247 GCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTP----NLTSVYIA 302

Query: 68  KHTTNFLALRYR-NGSYILNGDWAIN 92
            H   F  L  R  G Y++ G  +I+
Sbjct: 303 NHRPLFTHLAVRIGGRYVVAGKMSIS 328


>pdb|3GHM|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
           Human Adamts13 (Form-1)
          Length = 410

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 9   GCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLT-VSEM 67
           GCDG + S++  DRC VCGGDNS+C    G FT          +T  P    NLT V   
Sbjct: 247 GCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTP----NLTSVYIA 302

Query: 68  KHTTNFLALRYR-NGSYILNGDWAIN 92
            H   F  L  R  G Y++ G  +I+
Sbjct: 303 NHRPLFTHLAVRIGGRYVVAGKMSIS 328


>pdb|3VN4|A Chain A, Crystal Structure Of The Exosite-Containing Fragment Of
           Human Adamts13 (P475s Mutant)
          Length = 410

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 9   GCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLT-VSEM 67
           GCDG + S++  DRC VCGGDNS+C    G FT          +T  P    NLT V   
Sbjct: 247 GCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGRAREYVTFLTVTP----NLTSVYIA 302

Query: 68  KHTTNFLALRYR-NGSYILNGDWAIN 92
            H   F  L  R  G Y++ G  +I+
Sbjct: 303 NHRPLFTHLAVRIGGRYVVAGKMSIS 328


>pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked
           Glutaraldehyde Forming A Thiohemiacetal Adduct
 pdb|1ZLP|B Chain B, Petal Death Protein Psr132 With Cysteine-Linked
           Glutaraldehyde Forming A Thiohemiacetal Adduct
          Length = 318

 Score = 28.1 bits (61), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/54 (29%), Positives = 22/54 (40%)

Query: 104 FTYRRGSNNVGQYLSSPGPLTEPLDLMVVFQQTNPGIKYEYQLSMESPNEAFLP 157
           +   R   N+ + L   G   + LD M  F + N  I  E    MES  + F P
Sbjct: 262 YATARALVNIMKILKEKGTTRDDLDQMATFSEFNELISLESWYEMESKFKNFTP 315


>pdb|1N8P|A Chain A, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|B Chain B, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|C Chain C, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
 pdb|1N8P|D Chain D, Crystal Structure Of Cystathionine Gamma-lyase From Yeast
          Length = 393

 Score = 26.9 bits (58), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 112 NVGQYLSSPGPLTEPLDLMVVFQQT---NPGIKYEYQLSMESPN 152
           + G+++   G + EP+ L   F+Q+   NP   YEY  S ++PN
Sbjct: 14  HAGEHVDVHGSVIEPISLSTTFKQSSPANPIGTYEYSRS-QNPN 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.137    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,102,023
Number of Sequences: 62578
Number of extensions: 265482
Number of successful extensions: 488
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)