Query psy4860
Match_columns 182
No_of_seqs 114 out of 516
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 19:32:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05986 ADAM_spacer1: ADAM-TS 100.0 3.4E-36 7.3E-41 226.0 15.4 113 34-147 1-114 (114)
2 KOG3538|consensus 99.9 5.5E-26 1.2E-30 218.3 11.4 162 3-166 610-784 (845)
3 KOG4597|consensus 98.8 1.9E-09 4.1E-14 97.1 3.1 160 9-172 1-168 (560)
4 PHA02606 5.1 hypothetical prot 48.4 1.4E+02 0.0031 23.9 8.1 74 95-171 61-145 (179)
5 TIGR03214 ura-cupin putative a 41.2 1.2E+02 0.0025 25.6 6.8 52 74-137 204-255 (260)
6 PF14977 FAM194: FAM194 protei 40.6 2.1E+02 0.0046 23.7 9.7 78 47-130 32-118 (208)
7 cd00729 rubredoxin_SM Rubredox 39.4 13 0.00029 21.6 0.6 22 10-31 8-29 (34)
8 PF06943 zf-LSD1: LSD1 zinc fi 35.5 30 0.00064 19.1 1.5 15 49-63 4-18 (25)
9 TIGR01053 LSD1 zinc finger dom 34.2 32 0.0007 19.8 1.6 14 50-63 8-21 (31)
10 COG2260 Predicted Zn-ribbon RN 31.5 19 0.00042 23.9 0.4 13 20-32 17-29 (59)
11 PF00781 DAGK_cat: Diacylglyce 30.5 6 0.00013 29.3 -2.5 40 20-61 55-94 (130)
12 KOG4597|consensus 25.4 35 0.00075 32.0 1.1 37 112-148 13-49 (560)
13 smart00046 DAGKc Diacylglycero 23.3 21 0.00046 26.4 -0.6 41 20-61 50-90 (124)
14 cd00350 rubredoxin_like Rubred 20.5 64 0.0014 18.4 1.2 22 10-31 7-28 (33)
No 1
>PF05986 ADAM_spacer1: ADAM-TS Spacer 1; InterPro: IPR010294 This domain represents the Spacer-1 domain from the ADAM-TS family of metalloproteinases []. A cellular disintegrin and metalloproteinase (ADAM) is a family of genes with structural homology to the snake venom metalloproteinases and disintegrins []. There is variation amongst members of the family, however, all have a similar domain organisation comprising a preproregion, a reprolysin-type catalytic domain, a disintegrin-like domain, a thrombospondin type-1 (TS) module, a cysteine-rich domain, a spacer domain without cysteine residues, and a COOH-terminal TS module [, ]. They are involved in embryogenesis and have been implicated in some cancers and inflammatory diseases [].; GO: 0004222 metalloendopeptidase activity, 0031012 extracellular matrix
Probab=100.00 E-value=3.4e-36 Score=226.01 Aligned_cols=113 Identities=44% Similarity=0.862 Sum_probs=108.3
Q ss_pred eeEeceeecCCCCCCceeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCC
Q psy4860 34 RLVSGLFTRPLLPGGYNLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNV 113 (182)
Q Consensus 34 ~~v~g~f~~~~~~~gy~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~ 113 (182)
++|+|+|++.....||.+|++||+||++|+|+|..++.||||||+++|+|+|||+|.++|++.|.+|||.|+|+|. ...
T Consensus 1 k~V~G~f~~~~~~~gY~~v~~IP~GA~nI~I~e~~~s~n~Lalk~~~g~y~lNg~~~i~~~~~~~~aGt~~~Y~~~-~~~ 79 (114)
T PF05986_consen 1 KTVSGTFNESRLGYGYNKVVTIPAGARNIRITERRPSSNYLALKNSDGKYVLNGNWVISWPGTYSVAGTTFEYSRS-DDN 79 (114)
T ss_pred CEEEeEeCCCCCCCCceEEEECCCCceEEEEEEeecCccEEEEEecCCcEEEcCCccccCCcCEEeCCeEEEEEec-CCC
Confidence 5799999998778999999999999999999999999999999999999999999999999999999999999998 456
Q ss_pred ceEEEcCCCCCCCEEEEEEec-ccCCCeEEEEEec
Q psy4860 114 GQYLSSPGPLTEPLDLMVVFQ-QTNPGIKYEYQLS 147 (182)
Q Consensus 114 ~E~i~a~GP~~e~l~v~vl~~-~~np~v~Y~Y~lP 147 (182)
.|+|+++|||+++|+||||++ ..||+|+|+|+||
T Consensus 80 ~E~i~~~GPl~e~l~v~vl~~~~~np~I~Y~Y~iP 114 (114)
T PF05986_consen 80 LERITAPGPLTEDLIVQVLSQNESNPGITYEYTIP 114 (114)
T ss_pred CEEEEcCCCCCCCEEEEEEEecCCCCCeEEEEECC
Confidence 999999999999999999999 7999999999998
No 2
>KOG3538|consensus
Probab=99.93 E-value=5.5e-26 Score=218.27 Aligned_cols=162 Identities=38% Similarity=0.775 Sum_probs=144.5
Q ss_pred CCceEcCCCceecCcceeecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeEEEEEe-eecCCceeEEeeeC-
Q psy4860 3 CPVQQVGCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLTVSE-MKHTTNFLALRYRN- 80 (182)
Q Consensus 3 ~~c~~vGCD~~l~S~a~~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~I~I~e-~~~s~n~Lal~~~~- 80 (182)
..|+++|||++++|.+++|+||||+||+|+|+.+.|.|+.... .+|.+++.||+||++|+|.| ...+.+|||+++..
T Consensus 610 g~C~~~~Cd~~~~s~~~~d~cgvCgG~~s~c~~~~g~~~~~~~-~~y~~v~~ip~~a~~i~v~~~~~~~~~~~a~k~~~~ 688 (845)
T KOG3538|consen 610 GSCKKVGCDSELGSEAREDKCGVCGGDGSSCKTVSGTFNPSSK-AGYNKVVEIPAGASHIRVRECLCGSPHYLALKSSDC 688 (845)
T ss_pred cEEeccCCCCccccccccccCCccCCCcccCceeeCCcccccC-CccceeEEEeCCCceeeeeccccccccchhhhccCc
Confidence 4699999999999999999999999999999999999998753 34999999999999999999 88899999999987
Q ss_pred CeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEEEEEecc---cCCCeEEEEEecCCCCCC----
Q psy4860 81 GSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDLMVVFQQ---TNPGIKYEYQLSMESPNE---- 153 (182)
Q Consensus 81 g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v~vl~~~---~np~v~Y~Y~lP~~~~~~---- 153 (182)
++|.+||.|.+++++.+..+|+.+.|.+. ....|.|.+.||+.+++.++||.+. .+++++|+|++|+.....
T Consensus 689 ~~~~~n~~~~i~~~~~~~~~g~~~~~~~~-~~~~e~l~~~gp~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (845)
T KOG3538|consen 689 GKYSLNGRWQIQWPSEFCCAGTTRRYSRR-PNTPESLEASGPLPETLTVQVLVQGDTVPNPGVRYEFTVPKDTEPRRQYT 767 (845)
T ss_pred CccccCCCccccccCccccccceeeeccC-cccceecccCCCcCCCceEEEEEecCCCCCCccceEEEcccCCCccccee
Confidence 89999999999999999999999999998 5678999999999999999999986 488999999999766422
Q ss_pred ----CccCCCCCCCccc
Q psy4860 154 ----AFLPANSNLGPEI 166 (182)
Q Consensus 154 ----~~~~~~~~~~~~~ 166 (182)
....|+..||+|.
T Consensus 768 w~~~~w~~Cs~~cg~g~ 784 (845)
T KOG3538|consen 768 WAHGPWSECSASCGGGV 784 (845)
T ss_pred eecCCccccccccCCCc
Confidence 2345777788665
No 3
>KOG4597|consensus
Probab=98.83 E-value=1.9e-09 Score=97.12 Aligned_cols=160 Identities=17% Similarity=0.086 Sum_probs=132.5
Q ss_pred CCCceecCcceeecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCC
Q psy4860 9 GCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGD 88 (182)
Q Consensus 9 GCD~~l~S~a~~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~ 88 (182)
|||+.++|.-++|+|+.|.+++++|+.+.+.+.....+.||+....||.+++|+.+++..+..+-+++++....++.+|+
T Consensus 1 ~c~~k~~~~~~~~a~~~~l~~g~t~~~~~~~~~~r~~~pGvh~~~~~p~~~tnaqs~~~r~~~r~~e~~ngek~~~~~g~ 80 (560)
T KOG4597|consen 1 GCDGKLGSSLKFDALLKLLLLGSTCKTIEGLPDERNSHPGVHPNIKLPNLWTNAQSTCARECTRDQECKNGEKCCYNVGG 80 (560)
T ss_pred CCCcccCcchhhcchhhhhccCCcCccccccccccCCCCCcCccccCccccccccccccCccCCcccccccchhceecCC
Confidence 79999999999999999999999999999999888778899999999999999999999999999999988889999999
Q ss_pred ccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEEEEEecc--cCCCeEEEEEecCCCCCC------CccCCCC
Q psy4860 89 WAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDLMVVFQQ--TNPGIKYEYQLSMESPNE------AFLPANS 160 (182)
Q Consensus 89 ~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v~vl~~~--~np~v~Y~Y~lP~~~~~~------~~~~~~~ 160 (182)
..+.-..+|... ++|.|... ..|.+.+.+|..+.+.+-.++.+ ---.+.|.+.+|...... .-.++.-
T Consensus 81 ~~~~ve~r~~~~-~k~~~~g~---~pea~~~~~~~~qq~s~~dif~~~~r~~~~~~~~~eP~~~~~d~~~k~~n~t~cs~ 156 (560)
T KOG4597|consen 81 GLSCVEARVEVG-TKFVPDGA---EPEALCAQFPCSQQGSVCDIFDGQPRCTCIDRCEKEPSFTCADDGLKYYNCTMCSE 156 (560)
T ss_pred chhheeeecccc-ceecCCCC---CccchhccCccccccccccccCCCCCcccccccccCCchhhhhcCceecceEehhh
Confidence 887766677765 88888775 67999999999999999888876 233477777777554321 2355666
Q ss_pred CCCcccccccCc
Q psy4860 161 NLGPEIENRIGP 172 (182)
Q Consensus 161 ~~~~~~~~~~~~ 172 (182)
.||-|++=+|-+
T Consensus 157 aCgKG~q~~iv~ 168 (560)
T KOG4597|consen 157 ACGKGVQLRIVY 168 (560)
T ss_pred hhcCCceeeeEE
Confidence 777776655543
No 4
>PHA02606 5.1 hypothetical protein; Provisional
Probab=48.39 E-value=1.4e+02 Score=23.94 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=37.0
Q ss_pred ceEEecCeEEEEEeCC-----CCCceEEEcCCCCCCCEEEEEEecc------cCCCeEEEEEecCCCCCCCccCCCCCCC
Q psy4860 95 GDYEGAGTKFTYRRGS-----NNVGQYLSSPGPLTEPLDLMVVFQQ------TNPGIKYEYQLSMESPNEAFLPANSNLG 163 (182)
Q Consensus 95 g~~~~aGt~~~Y~r~~-----~~~~E~i~a~GP~~e~l~v~vl~~~------~np~v~Y~Y~lP~~~~~~~~~~~~~~~~ 163 (182)
+.|.+...-+.|+..+ -..+|.| +-|...+|..+--.+. .-+.+.|.|..|.+..... .-.++..+
T Consensus 61 ~vF~lg~d~LKYRlk~~e~kta~swedL--P~~~t~dlY~f~AP~~L~k~ftY~Vtl~Yd~~~~~~~Ggsg-~~~~~~~~ 137 (179)
T PHA02606 61 SVFSLGNDALKYRLKDDEFKTASSWEDL--PDPSTADLYLFKAPQNLQKTFTYEVTLIYDYQEPSESGGSG-SGSNSSEG 137 (179)
T ss_pred EEEeecCCceEEEecCCceecccchhhC--CCcccccEEEEcCCccceeEEEEEEEEEEEEEeccCCCCcC-CCcccccc
Confidence 4555655667777531 1122333 3444444444332221 2345677777776555333 34555566
Q ss_pred cccccccC
Q psy4860 164 PEIENRIG 171 (182)
Q Consensus 164 ~~~~~~~~ 171 (182)
++..|++-
T Consensus 138 ~~e~~Ppp 145 (179)
T PHA02606 138 AGETNPPP 145 (179)
T ss_pred ccccCCCC
Confidence 66666553
No 5
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=41.24 E-value=1.2e+02 Score=25.65 Aligned_cols=52 Identities=21% Similarity=0.370 Sum_probs=29.6
Q ss_pred eEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEEEEEecccC
Q psy4860 74 LALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDLMVVFQQTN 137 (182)
Q Consensus 74 Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v~vl~~~~n 137 (182)
+.+...+|.|.+||+|..-.+|.+. |-.+ .....+.+.|. +++..++ +.+.|
T Consensus 204 ~yiL~G~G~~~~~g~~~~V~~GD~i-------~i~~--~~~h~~~~~G~--~~~~~l~-ykd~n 255 (260)
T TIGR03214 204 LYVLEGKGVYNLDNNWVPVEAGDYI-------WMGA--YCPQACYAGGR--GEFRYLL-YKDMN 255 (260)
T ss_pred EEEEeceEEEEECCEEEEecCCCEE-------EECC--CCCEEEEecCC--CcEEEEE-Ecccc
Confidence 3444456777788777655555432 3333 34567777777 6665444 44444
No 6
>PF14977 FAM194: FAM194 protein
Probab=40.56 E-value=2.1e+02 Score=23.67 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=42.9
Q ss_pred CCceeEEecCC-CC-eEEEEEeeecCCceeEEeeeCCe---EEEcCCccccc--c-ceE-EecCeEEEEEeCCCCCceEE
Q psy4860 47 GGYNLITQIPR-GA-CNLTVSEMKHTTNFLALRYRNGS---YILNGDWAINW--S-GDY-EGAGTKFTYRRGSNNVGQYL 117 (182)
Q Consensus 47 ~gy~~v~~IP~-GA-~~I~I~e~~~s~n~Lal~~~~g~---y~lNG~~~i~~--~-g~~-~~aGt~~~Y~r~~~~~~E~i 117 (182)
.|=.-|+.+|. .+ ....|.|..+...+||+-|+.|+ |.-||+-.+.. . |.+ .-+|.+.+--+ | ..
T Consensus 32 SGnlAi~~~~~~~~~~~~~v~eD~~~~~ilA~Fd~~G~g~~y~~~g~~~l~l~~~gG~~~D~~G~~~k~W~-----W-~~ 105 (208)
T PF14977_consen 32 SGNLAICISPTCRGGFTYIVYEDSPENTILALFDSSGHGTCYHPNGNIWLVLNQEGGQYFDQKGNRVKKWN-----W-SS 105 (208)
T ss_pred CCCEEEEEeccCCCceEEEEEecCCCCceEEEEcCCCCEEEEcCCCCEEEEEECCCCEEEcCCCCEEEEEe-----c-CC
Confidence 45567777873 22 34556666677779999998653 56677533332 2 222 24555544322 2 23
Q ss_pred EcCCCCCCCEEEE
Q psy4860 118 SSPGPLTEPLDLM 130 (182)
Q Consensus 118 ~a~GP~~e~l~v~ 130 (182)
++..|..++|.+.
T Consensus 106 ~~~~Pp~~pi~~k 118 (208)
T PF14977_consen 106 HVHAPPFQPISLK 118 (208)
T ss_pred CCCCCccccEEEE
Confidence 4455555554443
No 7
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.44 E-value=13 Score=21.63 Aligned_cols=22 Identities=23% Similarity=0.745 Sum_probs=17.0
Q ss_pred CCceecCcceeecccccccCCC
Q psy4860 10 CDGVVGSEKSLDRCGVCGGDNS 31 (182)
Q Consensus 10 CD~~l~S~a~~D~CGVC~GDgS 31 (182)
|-.+..+....|+|-+||...+
T Consensus 8 CG~i~~g~~~p~~CP~Cg~~~~ 29 (34)
T cd00729 8 CGYIHEGEEAPEKCPICGAPKE 29 (34)
T ss_pred CCCEeECCcCCCcCcCCCCchH
Confidence 6677777777899999987644
No 8
>PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=35.48 E-value=30 Score=19.08 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=11.8
Q ss_pred ceeEEecCCCCeEEE
Q psy4860 49 YNLITQIPRGACNLT 63 (182)
Q Consensus 49 y~~v~~IP~GA~~I~ 63 (182)
-..++.-|.||++++
T Consensus 4 Cr~~L~yp~GA~sVr 18 (25)
T PF06943_consen 4 CRTLLMYPRGAPSVR 18 (25)
T ss_pred CCceEEcCCCCCCeE
Confidence 346788899999876
No 9
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=34.18 E-value=32 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=11.4
Q ss_pred eeEEecCCCCeEEE
Q psy4860 50 NLITQIPRGACNLT 63 (182)
Q Consensus 50 ~~v~~IP~GA~~I~ 63 (182)
..++..|+||++|+
T Consensus 8 ~t~L~yP~gA~~vr 21 (31)
T TIGR01053 8 RTLLMYPRGASSVR 21 (31)
T ss_pred CcEeecCCCCCeEE
Confidence 45788999999876
No 10
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=31.51 E-value=19 Score=23.94 Aligned_cols=13 Identities=46% Similarity=1.168 Sum_probs=10.2
Q ss_pred eecccccccCCCc
Q psy4860 20 LDRCGVCGGDNSS 32 (182)
Q Consensus 20 ~D~CGVC~GDgSt 32 (182)
.|+|-+|||+--.
T Consensus 17 ke~Cp~CG~~t~~ 29 (59)
T COG2260 17 KEKCPVCGGDTKV 29 (59)
T ss_pred cccCCCCCCcccc
Confidence 3899999998543
No 11
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=30.53 E-value=6 Score=29.33 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=27.0
Q ss_pred eecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeE
Q psy4860 20 LDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACN 61 (182)
Q Consensus 20 ~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~ 61 (182)
.|.--++||||+--..+.+...... ..-..+..||.|..|
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~--~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDR--EDKPPLGIIPAGTGN 94 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTS--SS--EEEEEE-SSS-
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCC--CccceEEEecCCChh
Confidence 3667799999999999888655432 124579999999766
No 12
>KOG4597|consensus
Probab=25.42 E-value=35 Score=31.96 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=32.0
Q ss_pred CCceEEEcCCCCCCCEEEEEEecccCCCeEEEEEecC
Q psy4860 112 NVGQYLSSPGPLTEPLDLMVVFQQTNPGIKYEYQLSM 148 (182)
Q Consensus 112 ~~~E~i~a~GP~~e~l~v~vl~~~~np~v~Y~Y~lP~ 148 (182)
...+.+.+-|++.+.+.++...+..+|||.|.|.+|.
T Consensus 13 ~a~~~~l~~g~t~~~~~~~~~~r~~~pGvh~~~~~p~ 49 (560)
T KOG4597|consen 13 DALLKLLLLGSTCKTIEGLPDERNSHPGVHPNIKLPN 49 (560)
T ss_pred cchhhhhccCCcCccccccccccCCCCCcCccccCcc
Confidence 3456778899999999888888889999999999987
No 13
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=23.33 E-value=21 Score=26.41 Aligned_cols=41 Identities=32% Similarity=0.449 Sum_probs=27.8
Q ss_pred eecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeE
Q psy4860 20 LDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACN 61 (182)
Q Consensus 20 ~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~ 61 (182)
+|.=-+|||||+-=+.+.+.+..... .--..+..||.|..|
T Consensus 50 ~d~vvv~GGDGTi~~vvn~l~~~~~~-~~~~plgiiP~GTgN 90 (124)
T smart00046 50 FDRVLVCGGDGTVGWVLNALDKRELP-LPEPPVAVLPLGTGN 90 (124)
T ss_pred CCEEEEEccccHHHHHHHHHHhcccc-cCCCcEEEeCCCChh
Confidence 34445899999999888887543211 001468999999765
No 14
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.50 E-value=64 Score=18.40 Aligned_cols=22 Identities=27% Similarity=0.592 Sum_probs=16.9
Q ss_pred CCceecCcceeecccccccCCC
Q psy4860 10 CDGVVGSEKSLDRCGVCGGDNS 31 (182)
Q Consensus 10 CD~~l~S~a~~D~CGVC~GDgS 31 (182)
|-.+.+.....++|-+||.+.+
T Consensus 7 CGy~y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 7 CGYIYDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred CCCEECCCcCCCcCcCCCCcHH
Confidence 6777777778889999987543
Done!