Query psy4860
Match_columns 182
No_of_seqs 114 out of 516
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 19:32:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghm_A A disintegrin and metal 100.0 1.4E-46 4.8E-51 333.8 15.5 145 5-151 243-400 (410)
2 1sq4_A GLXB, glyoxylate-induce 39.2 55 0.0019 26.4 5.8 70 50-131 193-262 (278)
3 2wnw_A Activated by transcript 29.2 2E+02 0.0068 24.9 8.0 54 55-109 377-433 (447)
4 4e2q_A Ureidoglycine aminohydr 28.7 92 0.0031 25.4 5.4 74 51-137 189-262 (266)
5 1ic9_A TH10AOX; three stranded 28.6 14 0.00048 19.7 0.3 10 141-150 2-11 (29)
6 3lcz_A YCZA, inhibitor of trap 26.0 23 0.00078 21.9 1.0 22 10-31 12-34 (53)
7 2y6h_A Xylanase, CBM4-2; hydro 22.4 73 0.0025 23.3 3.2 33 116-148 58-92 (167)
8 1sfn_A Conserved hypothetical 21.7 1.6E+02 0.0056 22.9 5.6 75 50-137 167-241 (246)
9 3hn9_A Lamin-B1; structural ge 20.5 2.1E+02 0.0073 20.3 5.5 32 61-92 14-45 (123)
10 3jt0_A Lamin-B1; structural ge 19.8 2.7E+02 0.0092 20.5 7.4 32 61-92 27-58 (144)
No 1
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13; thrombospondin type-1 motif, beta sandwich, hydrolase; HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A* 3vn4_A*
Probab=100.00 E-value=1.4e-46 Score=333.79 Aligned_cols=145 Identities=28% Similarity=0.474 Sum_probs=133.0
Q ss_pred ceEcCCCceecCcceeecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEE
Q psy4860 5 VQQVGCDGVVGSEKSLDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYI 84 (182)
Q Consensus 5 c~~vGCD~~l~S~a~~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~ 84 (182)
|++||||++|+|+|++|+||||+||||||++|+|+|++.. ..||++|++||+||++|+|+|++++.||||||+ +|+||
T Consensus 243 C~~vGCD~~l~S~~~~D~CGVCgGdgstC~~v~G~f~~~~-~~gY~~v~~IP~GA~~I~I~e~~~s~n~LAl~~-~g~y~ 320 (410)
T 3ghm_A 243 CRTFGCDGRMDSQQVWDRCQVCGGDNSTCSPRKGSFTAGR-AREYVTFLTVTPNLTSVYIANHRPLFTHLAVRI-GGRYV 320 (410)
T ss_dssp EEEECTTSBBTCCCCBCTTSCBTCCSCSEEEEEEEECCCC-BTEEEEEEEECTTCEEEEEEESCTTSEEEEEEE-TTEEE
T ss_pred cccccCCcccccccccccccccCCCCCEeeeeeeeeccCC-CCcceEEEecCCCceEEEEEccCCCccEEEEec-CCeEE
Confidence 9999999999999999999999999999999999999874 579999999999999999999999999999994 79999
Q ss_pred EcCCccccccceEEe--cCeEEEEEeCC----CCCceEEEcCCCCCCCEEEEEEec-------ccCCCeEEEEEecCCCC
Q psy4860 85 LNGDWAINWSGDYEG--AGTKFTYRRGS----NNVGQYLSSPGPLTEPLDLMVVFQ-------QTNPGIKYEYQLSMESP 151 (182)
Q Consensus 85 lNG~~~i~~~g~~~~--aGt~~~Y~r~~----~~~~E~i~a~GP~~e~l~v~vl~~-------~~np~v~Y~Y~lP~~~~ 151 (182)
|||+|.|++++.|.+ |||.|+|++.. ....|+|+++|||+|+|+||||++ .+||+|+|||+||++..
T Consensus 321 lNG~~~i~~~~~~~~~~~gt~~~Y~~~~~~~~~~~~E~l~a~GP~~e~l~v~vl~~~~~~~~~~~npgI~Yey~~P~~~~ 400 (410)
T 3ghm_A 321 VAGKMSISPNTTYPSLLEDGRVEYRVALTEDRLPRLEEIRIWGPLQEDADIQVYRRYGEEYGNLTRPDITFTYFQPKPRQ 400 (410)
T ss_dssp ECCSSSCCCSEEESCTTCSSEEEEEEEECSSSCEEEEEEEEESCCSSCEEEEEEESSCGGGCSTTSCCEEEEEEEECC--
T ss_pred ecCCccccCCcceeeeeCCcEEEEEecccCCCCCCceEEECCCCCCCCEEEEEEEccccccccCCCCCeEEEEEecCCcc
Confidence 999999999999974 79999999852 124699999999999999999986 47999999999998764
No 2
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=39.20 E-value=55 Score=26.43 Aligned_cols=70 Identities=23% Similarity=0.166 Sum_probs=36.8
Q ss_pred eeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEE
Q psy4860 50 NLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDL 129 (182)
Q Consensus 50 ~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v 129 (182)
..++++|+|+.-=. .+.......+-+...++.|.+||.|..-. +|..+.+... ....+...|+ +++..
T Consensus 193 ~~~~~l~pG~~i~~-~~~h~~e~~~~il~G~~~~~~~~~~~~v~------~GD~~~~~~~---~~h~~~n~g~--~~~~y 260 (278)
T 1sq4_A 193 VNIVNFEPGGVIPF-AETHVMEHGLYVLEGKAVYRLNQDWVEVE------AGDFMWLRAF---CPQACYSGGP--GRFRY 260 (278)
T ss_dssp EEEEEECSSSEESC-CCCCSEEEEEEEEECEEEEEETTEEEEEE------TTCEEEEEES---CCEEEECCSS--SCEEE
T ss_pred EEEEEECCCCCcCC-CCCCCccEEEEEEeCEEEEEECCEEEEeC------CCCEEEECCC---CCEEEEcCCC--CCEEE
Confidence 35677888874311 11111122344444566777777765433 3444444433 4456777777 67655
Q ss_pred EE
Q psy4860 130 MV 131 (182)
Q Consensus 130 ~v 131 (182)
.+
T Consensus 261 l~ 262 (278)
T 1sq4_A 261 LL 262 (278)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 3
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp}
Probab=29.18 E-value=2e+02 Score=24.86 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=31.3
Q ss_pred cCCCCeEEEEEeeecCCceeEEeeeCCeEE---EcCCccccccceEEecCeEEEEEeC
Q psy4860 55 IPRGACNLTVSEMKHTTNFLALRYRNGSYI---LNGDWAINWSGDYEGAGTKFTYRRG 109 (182)
Q Consensus 55 IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~---lNG~~~i~~~g~~~~aGt~~~Y~r~ 109 (182)
||+||+.|.+......-...|.++.+|++. +|..-. +.+-.+.+.|..+.+.-+
T Consensus 377 irPGa~rI~~~~~~~~l~~~Af~~pdg~~vvVv~N~~~~-~~~~~~~~~g~~~~~~lp 433 (447)
T 2wnw_A 377 VRPGARVMLSSSYDNLLEEVGFVNPDGERVLVVYNRDVQ-ERRCRVLDGDKEIALTLP 433 (447)
T ss_dssp CCTTCEEEEEEESCTTEEEEEEECTTSCEEEEEEECSSS-CEEEEEEETTEEEEEEEC
T ss_pred cCCCCEEEEeecCCCCeEEEEEECCCCCEEEEEEeCCCC-CEEEEEEECCcEEEEEEC
Confidence 789999998874333346788888777664 453321 112233444555555544
No 4
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=28.72 E-value=92 Score=25.37 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=41.0
Q ss_pred eEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEEE
Q psy4860 51 LITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDLM 130 (182)
Q Consensus 51 ~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v~ 130 (182)
.++++-+|+.- -..++..-.+-|-+...+|.|.||++|..-.+|.|. |-++ .....+.+.|+ +++...
T Consensus 189 ~~~t~~PG~~~-p~~e~H~~eh~~~vL~G~g~y~l~~~~~~V~~GD~i-------~~~~--~~~h~~~n~G~--e~~~yl 256 (266)
T 4e2q_A 189 HTMDFQPGEFL-NVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVI-------WMAP--FVPQWYAALGK--TRSRYL 256 (266)
T ss_dssp EEEEECTTCBC-SSCCCCSCCEEEEEEECEEEEEETTEEEEEETTCEE-------EECT--TCCEEEEEESS--SCEEEE
T ss_pred EEEEECCCcCc-CCceEcccceEEEEEeceEEEEECCEEEEecCCCEE-------EECC--CCcEEEEeCCC--CCEEEE
Confidence 45555555432 111222222334445567889999998766666554 3444 45677888887 777443
Q ss_pred EEecccC
Q psy4860 131 VVFQQTN 137 (182)
Q Consensus 131 vl~~~~n 137 (182)
++.+-|
T Consensus 257 -~ykd~n 262 (266)
T 4e2q_A 257 -LYKDVN 262 (266)
T ss_dssp -EEEECS
T ss_pred -EEcccc
Confidence 344433
No 5
>1ic9_A TH10AOX; three stranded antiparallel beta-sheet mini-protein motif de novo protein design; HET: DPR DAL; NMR {Synthetic} SCOP: k.26.1.1 PDB: 1ico_A* 1icl_A*
Probab=28.55 E-value=14 Score=19.73 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=7.4
Q ss_pred EEEEEecCCC
Q psy4860 141 KYEYQLSMES 150 (182)
Q Consensus 141 ~Y~Y~lP~~~ 150 (182)
+|||+||.-.
T Consensus 2 kyeytipsyt 11 (29)
T 1ic9_A 2 KYEYTIPSYT 11 (29)
T ss_dssp CCEEEETTEE
T ss_pred cceEecccee
Confidence 5899998543
No 6
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=26.02 E-value=23 Score=21.91 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=13.1
Q ss_pred CCceecCcce-eecccccccCCC
Q psy4860 10 CDGVVGSEKS-LDRCGVCGGDNS 31 (182)
Q Consensus 10 CD~~l~S~a~-~D~CGVC~GDgS 31 (182)
|+.--|+++. .|+|..|+|.|.
T Consensus 12 C~~C~GsG~~i~~~C~~C~G~G~ 34 (53)
T 3lcz_A 12 CPNCNGSGREEPEPCPKCLGKGV 34 (53)
T ss_dssp CTTTTTSCEETTEECTTTTTSSE
T ss_pred CcCCcccccCCCCcCCCCCCcEE
Confidence 4444455544 477777777763
No 7
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A
Probab=22.39 E-value=73 Score=23.34 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=23.5
Q ss_pred EEEcCCCCCCCEEEEE--EecccCCCeEEEEEecC
Q psy4860 116 YLSSPGPLTEPLDLMV--VFQQTNPGIKYEYQLSM 148 (182)
Q Consensus 116 ~i~a~GP~~e~l~v~v--l~~~~np~v~Y~Y~lP~ 148 (182)
.++..|-=+.|..|+. +...-.|+|+|.|+|-.
T Consensus 58 avtvng~gnnp~~i~ata~pvnv~pgvtytyti~a 92 (167)
T 2y6h_A 58 AVTVNGVGNNPFNIQATALPVNVRPGVTYTYTIRA 92 (167)
T ss_dssp EEECCCCCSSGGGEEEEEEEEECCTTCEEEEEEEE
T ss_pred EEEeccCCCCCcceeeeeeeeeccCCceEEEEEEE
Confidence 3456677777766665 44557899999999854
No 8
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=21.67 E-value=1.6e+02 Score=22.90 Aligned_cols=75 Identities=16% Similarity=0.119 Sum_probs=39.7
Q ss_pred eeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEE
Q psy4860 50 NLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDL 129 (182)
Q Consensus 50 ~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v 129 (182)
..++++|+|+..=.. +......++-+...++.|.+||.|..-. +|..+.+.- .....+...|+ +++ .
T Consensus 167 ~~~~tl~PG~~~~~~-~~h~~ee~~~vLeG~~~~~~~~~~~~l~------~GD~~~~~~---~~pH~~~n~g~--~~~-~ 233 (246)
T 1sfn_A 167 VSTMSFAPGASLPYA-EVHYMEHGLLMLEGEGLYKLEENYYPVT------AGDIIWMGA---HCPQWYGALGR--NWS-K 233 (246)
T ss_dssp EEEEEECTTCBCSSC-BCCSSCEEEEEEECEEEEEETTEEEEEE------TTCEEEECT---TCCEEEEEESS--SCE-E
T ss_pred EEEEEECCCCccCcc-cCCCceEEEEEEECEEEEEECCEEEEcC------CCCEEEECC---CCCEEEEcCCC--CCE-E
Confidence 467788888642111 1122334454554556777777665333 455454433 24566666666 666 4
Q ss_pred EEEecccC
Q psy4860 130 MVVFQQTN 137 (182)
Q Consensus 130 ~vl~~~~n 137 (182)
++++.+.|
T Consensus 234 yl~~kd~~ 241 (246)
T 1sfn_A 234 YLLYKDMN 241 (246)
T ss_dssp EEEEEECS
T ss_pred EEEEEecc
Confidence 44455544
No 9
>3hn9_A Lamin-B1; structural genomics, structural genomics consortium, SGC, acetylation, chromosomal rearrangement, coiled coil, intermediate filament; 2.00A {Homo sapiens} PDB: 3umn_A 2kpw_A
Probab=20.51 E-value=2.1e+02 Score=20.30 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=23.6
Q ss_pred EEEEEeeecCCceeEEeeeCCeEEEcCCcccc
Q psy4860 61 NLTVSEMKHTTNFLALRYRNGSYILNGDWAIN 92 (182)
Q Consensus 61 ~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~ 92 (182)
+|.|.|..+...|+.|+|...+-.--|+|.+.
T Consensus 14 ~V~I~evd~~G~fV~L~N~s~~~~~L~gW~l~ 45 (123)
T 3hn9_A 14 NVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMI 45 (123)
T ss_dssp SEEEEEECTTSSEEEEEECSSSCEECTTCEEE
T ss_pred CEEEEEEcCCCCEEEEEECCCCceecCCcEEE
Confidence 57888988889999999965444444667664
No 10
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=19.81 E-value=2.7e+02 Score=20.47 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=24.4
Q ss_pred EEEEEeeecCCceeEEeeeCCeEEEcCCcccc
Q psy4860 61 NLTVSEMKHTTNFLALRYRNGSYILNGDWAIN 92 (182)
Q Consensus 61 ~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~ 92 (182)
+|.|.|..+...|+.|+|...+-.--|+|.+.
T Consensus 27 ~V~I~Evd~~GkfV~L~N~s~~~~~LgGW~L~ 58 (144)
T 3jt0_A 27 NVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMI 58 (144)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEECTTCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCceecCCcEEE
Confidence 48899999999999999975444444667665
Done!