Query psy4860
Match_columns 182
No_of_seqs 114 out of 516
Neff 6.6
Searched_HMMs 13730
Date Fri Aug 16 19:32:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4860.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4860hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rc6a_ b.82.1.11 (A:) Hypothe 37.9 61 0.0044 23.6 7.8 76 50-137 173-248 (253)
2 d2bona1 e.52.1.2 (A:5-299) Lip 32.1 1.6 0.00012 33.5 -2.7 41 20-62 54-94 (295)
3 d1hpta_ g.68.1.1 (A:) Secretor 31.3 8.7 0.00064 22.4 1.3 23 2-32 8-30 (56)
4 d1tgsi_ g.68.1.1 (I:) Secretor 28.3 6.1 0.00045 23.2 0.1 23 2-32 8-30 (56)
5 d1ak2a2 g.41.2.1 (A:147-176) M 27.3 6.6 0.00048 20.4 0.1 15 15-29 12-26 (30)
6 d1dmfa_ g.46.1.1 (A:) Metallot 26.3 6.4 0.00047 19.6 -0.0 11 2-12 8-18 (28)
7 d1sefa_ b.82.1.11 (A:) Hypothe 24.4 65 0.0047 23.5 5.7 63 50-122 170-232 (250)
8 d1od5a1 b.82.1.2 (A:7-251) See 20.2 43 0.0031 25.2 3.8 24 51-76 115-138 (245)
9 d1pfoa_ f.9.1.1 (A:) Perfringo 19.3 42 0.0031 27.8 3.7 24 46-69 407-430 (471)
10 d1fxza1 b.82.1.2 (A:10-248) Se 18.6 58 0.0043 24.3 4.2 15 51-65 112-126 (239)
No 1
>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}
Probab=37.93 E-value=61 Score=23.64 Aligned_cols=76 Identities=18% Similarity=0.107 Sum_probs=34.9
Q ss_pred eeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCCCCCCEEE
Q psy4860 50 NLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDL 129 (182)
Q Consensus 50 ~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP~~e~l~v 129 (182)
..++.+++|+..- .........++-+.+.++.+.+||++..-.+|.+ +.. .+ ..+..+...|| .+...
T Consensus 173 ~~~~~~~PG~~~~-~~h~h~~ee~~~vl~G~g~~~i~~~~~~~~~GD~------i~~-~~--~~ph~~~~~g~--~~~~~ 240 (253)
T d1rc6a_ 173 MHILSFAPGASHG-YIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDY------IFM-GA--YSLQAGYGVGR--GEAFS 240 (253)
T ss_dssp EEEEEECTTCCBE-EEEEESSCEEEEEEESEEEEESSSCEEEEETTCE------EEE-CS--SEEEEEEEC------CEE
T ss_pred EEEEEECCCceEe-EEEeCCceEEEEEeCCEEEEEECCEEEEecCCCE------EEE-CC--CCCEeeeeCCC--CCcEE
Confidence 3567777776442 2222233334444445566777766543334432 322 21 23445555565 44445
Q ss_pred EEEecccC
Q psy4860 130 MVVFQQTN 137 (182)
Q Consensus 130 ~vl~~~~n 137 (182)
++++.+.|
T Consensus 241 ~~~~~~~~ 248 (253)
T d1rc6a_ 241 YIYSKDCN 248 (253)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 55555544
No 2
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=32.06 E-value=1.6 Score=33.47 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=29.2
Q ss_pred eecccccccCCCcceeEeceeecCCCCCCceeEEecCCCCeEE
Q psy4860 20 LDRCGVCGGDNSSCRLVSGLFTRPLLPGGYNLITQIPRGACNL 62 (182)
Q Consensus 20 ~D~CGVC~GDgStC~~v~g~f~~~~~~~gy~~v~~IP~GA~~I 62 (182)
+|.=-||||||+-...+++.+.... ..-..+..||.|..|.
T Consensus 54 ~d~Ivv~GGDGTv~ev~~gl~~~~~--~~~p~lgilP~GTgN~ 94 (295)
T d2bona1 54 VATVIAGGGDGTINEVSTALIQCEG--DDIPALGILPLGTAND 94 (295)
T ss_dssp CSEEEEEESHHHHHHHHHHHHHCCS--SCCCEEEEEECSSSCH
T ss_pred CCEEEEECCCcHHHHHHHHHHhccC--CCCceEEEEECCcccc
Confidence 3555599999999999988765432 1223577899998773
No 3
>d1hpta_ g.68.1.1 (A:) Secretory trypsin inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.33 E-value=8.7 Score=22.38 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=16.2
Q ss_pred CCCceEcCCCceecCcceeecccccccCCCc
Q psy4860 2 TCPVQQVGCDGVVGSEKSLDRCGVCGGDNSS 32 (182)
Q Consensus 2 ~~~c~~vGCD~~l~S~a~~D~CGVC~GDgSt 32 (182)
.|+|....|..... -|||.||-|
T Consensus 8 ~C~~~~~~C~~~~~--------PVCGsdG~T 30 (56)
T d1hpta_ 8 KCYNELNGCTYEYR--------PVCGTDGDT 30 (56)
T ss_dssp CCTTCSSCCCCCCB--------CEEETTSCE
T ss_pred cCCCCCCCCCCCCC--------cccCCCCcE
Confidence 57777777876653 388888853
No 4
>d1tgsi_ g.68.1.1 (I:) Secretory trypsin inhibitor {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.34 E-value=6.1 Score=23.19 Aligned_cols=23 Identities=35% Similarity=0.791 Sum_probs=16.6
Q ss_pred CCCceEcCCCceecCcceeecccccccCCCc
Q psy4860 2 TCPVQQVGCDGVVGSEKSLDRCGVCGGDNSS 32 (182)
Q Consensus 2 ~~~c~~vGCD~~l~S~a~~D~CGVC~GDgSt 32 (182)
.|+|....|...+. -|||-||-|
T Consensus 8 ~C~c~~~~C~~~~~--------PVCGsdG~T 30 (56)
T d1tgsi_ 8 TCTSEVSGCPKIYN--------PVCGTDGIT 30 (56)
T ss_dssp CCCCSSSSEECCCC--------CEEETTSCE
T ss_pred ccccCCCCCCCCCC--------ccCCCCCCE
Confidence 58887777876653 389999854
No 5
>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=27.27 E-value=6.6 Score=20.44 Aligned_cols=15 Identities=13% Similarity=0.129 Sum_probs=11.9
Q ss_pred cCcceeecccccccC
Q psy4860 15 GSEKSLDRCGVCGGD 29 (182)
Q Consensus 15 ~S~a~~D~CGVC~GD 29 (182)
+-.+++++|-+|||+
T Consensus 12 ~PPk~~g~cD~cg~~ 26 (30)
T d1ak2a2 12 NPPKEPMKDDITGEP 26 (30)
T ss_dssp BCCSSTTBCTTTCCB
T ss_pred cCCCCCCccCCCCCC
Confidence 346779999999985
No 6
>d1dmfa_ g.46.1.1 (A:) Metallothionein {Crab (Callinectes sapidus), alpha and beta domains [TaxId: 6763]}
Probab=26.28 E-value=6.4 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.909 Sum_probs=8.8
Q ss_pred CCCceEcCCCc
Q psy4860 2 TCPVQQVGCDG 12 (182)
Q Consensus 2 ~~~c~~vGCD~ 12 (182)
.|||+.-||..
T Consensus 8 kcvcqeggcka 18 (28)
T d1dmfa_ 8 KCVCQEGGCKA 18 (28)
T ss_dssp CCCTTTTCCCS
T ss_pred ceEEccCCccc
Confidence 59999988864
No 7
>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}
Probab=24.37 E-value=65 Score=23.51 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=33.2
Q ss_pred eeEEecCCCCeEEEEEeeecCCceeEEeeeCCeEEEcCCccccccceEEecCeEEEEEeCCCCCceEEEcCCC
Q psy4860 50 NLITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNVGQYLSSPGP 122 (182)
Q Consensus 50 ~~v~~IP~GA~~I~I~e~~~s~n~Lal~~~~g~y~lNG~~~i~~~g~~~~aGt~~~Y~r~~~~~~E~i~a~GP 122 (182)
..++.+++|+..- .........++-+.+..+.+.+||++..-.+| ..+. -.+ .....+...|+
T Consensus 170 ~~~~~~~PG~~~~-~~h~h~~ee~~~vl~G~~~~~~~~~~~~~~~G------D~i~-~~~--~~pH~~~n~G~ 232 (250)
T d1sefa_ 170 MHILSFEPGASHA-YIETHVQEHGAYLISGQGMYNLDNEWYPVEKG------DYIF-MSA--YVPQAAYAVGR 232 (250)
T ss_dssp EEEEEECTTCBCS-SCBCCSCCEEEEEEECEEEEEETTEEEEEETT------CEEE-ECT--TCCEEEEEECS
T ss_pred EEEEEECCCCccC-ccCccCceEEEEEeCCEEEEEECCEEEEecCC------CEEE-ECC--CCCEEeEcCCC
Confidence 4677777876541 11222334455566566777777765433333 3332 222 34566666665
No 8
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}
Probab=20.25 E-value=43 Score=25.18 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=15.6
Q ss_pred eEEecCCCCeEEEEEeeecCCceeEE
Q psy4860 51 LITQIPRGACNLTVSEMKHTTNFLAL 76 (182)
Q Consensus 51 ~v~~IP~GA~~I~I~e~~~s~n~Lal 76 (182)
+|+.||+|+..-..- .....++++
T Consensus 115 DVi~iPAG~~~w~yN--dgn~~Lv~v 138 (245)
T d1od5a1 115 DVLVIPPGVPYWTYN--TGDEPVVAI 138 (245)
T ss_dssp EEEEECTTCCEEEEE--CSSSCEEEE
T ss_pred CEEEECCCceEEEEe--CCCCcEEEE
Confidence 899999998775444 223444444
No 9
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]}
Probab=19.30 E-value=42 Score=27.80 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCCceeEEecCCCCeEEEEEeeec
Q psy4860 46 PGGYNLITQIPRGACNLTVSEMKH 69 (182)
Q Consensus 46 ~~gy~~v~~IP~GA~~I~I~e~~~ 69 (182)
..++...+.||++|+||+|.-++.
T Consensus 407 ta~f~t~i~l~~narni~v~~~e~ 430 (471)
T d1pfoa_ 407 TAHYSTVIPLEANARNIRIKAREC 430 (471)
T ss_dssp CSSEEEEEEECTTEEEEEEEEEEC
T ss_pred cccceEEEecCCCceeeEEEEEEc
Confidence 467889999999999999986543
No 10
>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}
Probab=18.57 E-value=58 Score=24.25 Aligned_cols=15 Identities=13% Similarity=0.237 Sum_probs=12.7
Q ss_pred eEEecCCCCeEEEEE
Q psy4860 51 LITQIPRGACNLTVS 65 (182)
Q Consensus 51 ~v~~IP~GA~~I~I~ 65 (182)
+|+.||+|+..-.+-
T Consensus 112 DVi~iPAG~~~w~~N 126 (239)
T d1fxza1 112 DLIAVPTGVAWWMYN 126 (239)
T ss_dssp EEEEECTTCEEEEEE
T ss_pred CEEEecCCceEEEEe
Confidence 899999998876664
Done!