RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4860
         (182 letters)



>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 117

 Score = 28.6 bits (63), Expect = 0.21
 Identities = 14/77 (18%), Positives = 25/77 (32%)

Query: 91  INWSGDYEGAGTKFTYRRGSNNVGQYLSSPGPLTEPLDLMVVFQQTNPGIKYEYQLSMES 150
           +   G Y+         R     G+ L  P  L   +  M   + +   +K  Y      
Sbjct: 32  VALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVG 91

Query: 151 PNEAFLPANSNLGPEIE 167
             +  +P N+ L  E+ 
Sbjct: 92  KEKFQIPPNAELKYELH 108


>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
           {Escherichia coli [TaxId: 562]}
          Length = 322

 Score = 27.7 bits (61), Expect = 0.72
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 51  LITQIPRGACNLTVSEMKHTTNFLALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRR 108
           L+  I  G   L    +    N  A   + G    + D    + G ++         R
Sbjct: 66  LLGAISHGEIPLRWRLLVILGNPPA--LKQGKRYCHSDMNRMFGGRWQLFAESGETCR 121


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 27.0 bits (60), Expect = 1.4
 Identities = 8/31 (25%), Positives = 10/31 (32%)

Query: 86  NGDWAINWSGDYEGAGTKFTYRRGSNNVGQY 116
              W      D +G G   T   G+    QY
Sbjct: 395 YSHWGTYHYADRDGIGVDRTVATGTGYTAQY 425


>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 311

 Score = 27.1 bits (58), Expect = 1.4
 Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 119 SPGPLTEPLDLMV-VFQQTNPGIKYEYQ 145
             G LTEP+      F++ +P ++ + +
Sbjct: 8   HAGSLTEPMKAFKRAFEEKHPNVEVQTE 35


>d1ex0a4 d.3.1.4 (A:191-510) Transglutaminase catalytic domain
           {Human (Homo sapiens), blood isozyme [TaxId: 9606]}
          Length = 320

 Score = 25.9 bits (57), Expect = 3.0
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 86  NGDWAINWSGDYEGAGTKFTYRRGSNNV-GQYLSSPGP 122
            G    ++   Y   G   +   GS ++  +Y SS  P
Sbjct: 82  EGVLVGSFDNIYAY-GVPPSAWTGSVDILLEYRSSENP 118


>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
           (hisactophilin) {Dictyostelium discoideum [TaxId:
           44689]}
          Length = 118

 Score = 24.8 bits (54), Expect = 3.6
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 75  ALRYRNGSYILNGDWAINWSGDYEGAGTKFTYRRGSNNV------GQYLSS 119
           A +  +G ++     A+     +    T F        V      G+YLS 
Sbjct: 5   AFKSHHGHFLSAEGEAVKTHHGHHDHHTHFHVENHGGKVALKTHCGKYLSI 55


>d1vjja4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain
           {Human (Homo sapiens), TGase E3 [TaxId: 9606]}
          Length = 321

 Score = 25.2 bits (55), Expect = 4.9
 Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 86  NGDWAINWSGDYEGAGTKFTYRRGS 110
           NG  A NWSG Y G G       GS
Sbjct: 89  NGVLAGNWSGTYTG-GRDPRSWNGS 112


>d1eexa_ c.1.19.3 (A:) Diol dehydratase, alpha subunit {Klebsiella
           oxytoca [TaxId: 571]}
          Length = 551

 Score = 25.2 bits (55), Expect = 5.4
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 78  YRNGSYILNGDW----AINWSGDYEGAGTKFT 105
           Y + S I+ GD     A+N   DY G  T + 
Sbjct: 501 YLHTSAIIVGDGQVLSAVNDVNDYAGPATGYR 532


>d1g0da4 d.3.1.4 (A:141-461) Transglutaminase catalytic domain {Red
           sea bream (Chrysophrys major) [TaxId: 143350]}
          Length = 321

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 6/25 (24%), Positives = 6/25 (24%), Gaps = 1/25 (4%)

Query: 86  NGDWAINWSGDYEGAGTKFTYRRGS 110
            G     W   Y   G       GS
Sbjct: 89  RGVLTGRWEEPYTD-GVAPYRWTGS 112


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 682,489
Number of extensions: 31248
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 11
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)