BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4861
(101 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q16832|DDR2_HUMAN Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1
SV=2
Length = 855
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 20 GAWCPKNQITTEP---REWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKL 76
GAWCP +I EP +E+++I+LH +H IT G QGR G G EF Y I+Y R
Sbjct: 70 GAWCP--EIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDGT 127
Query: 77 GKWVRYKDAKGNEM 90
+W+ +++ G ++
Sbjct: 128 -RWISWRNRHGKQV 140
>sp|Q7YR43|DDR1_PANTR Epithelial discoidin domain-containing receptor 1 OS=Pan
troglodytes GN=DDR1 PE=3 SV=1
Length = 909
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
GAWCP + + E+++++L +H++ G QGR G G EF+ +Y + Y R +W
Sbjct: 67 GAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR-RW 125
Query: 80 VRYKDAKGNEMYS 92
+ +KD G E+ S
Sbjct: 126 MGWKDRWGQEVIS 138
>sp|Q08345|DDR1_HUMAN Epithelial discoidin domain-containing receptor 1 OS=Homo sapiens
GN=DDR1 PE=1 SV=1
Length = 913
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
GAWCP + + E+++++L +H++ G QGR G G EF+ +Y + Y R +W
Sbjct: 71 GAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR-RW 129
Query: 80 VRYKDAKGNEMYS 92
+ +KD G E+ S
Sbjct: 130 MGWKDRWGQEVIS 142
>sp|Q63474|DDR1_RAT Epithelial discoidin domain-containing receptor 1 OS=Rattus
norvegicus GN=Ddr1 PE=2 SV=1
Length = 910
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
GAWCP + + E+++++L +H++ G QGR G G EF+ +Y + Y R +W
Sbjct: 72 GAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR-RW 130
Query: 80 VRYKDAKGNEMYS 92
+ +KD G E+ S
Sbjct: 131 MDWKDRWGQEVIS 143
>sp|Q03146|DDR1_MOUSE Epithelial discoidin domain-containing receptor 1 OS=Mus musculus
GN=Ddr1 PE=2 SV=2
Length = 911
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
GAWCP + + E+++++L +H++ G QGR G G EF+ +Y + Y R +W
Sbjct: 72 GAWCPAGPVFPKEEEYLQVDLRRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDGR-RW 130
Query: 80 VRYKDAKGNEMYS 92
+ +KD G E+ S
Sbjct: 131 MDWKDRWGQEVIS 143
>sp|Q62371|DDR2_MOUSE Discoidin domain-containing receptor 2 OS=Mus musculus GN=Ddr2 PE=1
SV=2
Length = 854
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 20 GAWCPKNQITTEP---REWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKL 76
GAWCP +I +P +E+++I+L +H IT G QGR G G EF Y I+Y R
Sbjct: 70 GAWCP--EIPVQPDDLKEFLQIDLRTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG- 126
Query: 77 GKWVRYKDAKGNEM 90
+W+ +++ G ++
Sbjct: 127 SRWISWRNRHGKQV 140
>sp|Q9Z1L4|XLRS1_MOUSE Retinoschisin OS=Mus musculus GN=Rs1 PE=1 SV=1
Length = 224
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGK 78
G AW K Q + +W++I+L + VI+ QGR E+ Y + Y +
Sbjct: 109 GCAWLSKYQ---DSSQWLQIDLKEIKVISGILTQGRCDID---EWVTKYSVQYRTDERLN 162
Query: 79 WVRYKDAKGNEMYSY 93
W+ YKD GN Y
Sbjct: 163 WIYYKDQTGNNRVFY 177
>sp|O15537|XLRS1_HUMAN Retinoschisin OS=Homo sapiens GN=RS1 PE=1 SV=2
Length = 224
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGK 78
G AW K Q +++ W++I+L + VI+ QGR E+ Y + Y +
Sbjct: 109 GCAWLSKFQDSSQ---WLQIDLKEIKVISGILTQGRCDID---EWMTKYSVQYRTDERLN 162
Query: 79 WVRYKDAKGNEMYSY 93
W+ YKD GN Y
Sbjct: 163 WIYYKDQTGNNRVFY 177
>sp|Q0V8T7|CTP5C_MOUSE Contactin-associated protein like 5-3 OS=Mus musculus GN=Cntnap5c
PE=2 SV=1
Length = 1305
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
G W P + + ++W++++L ITA QGR+G+ +++ +Y + +
Sbjct: 65 GGWSPAD---SNAQQWLQMDLGNRVEITAVATQGRYGS---SDWVTSYRLMF-------- 110
Query: 80 VRYKDAKGNEMYSYVQTGTLWR 101
G+ Y Q G++WR
Sbjct: 111 ----SDTGHNWQQYTQEGSIWR 128
>sp|Q9W6R5|XLRS1_TAKRU Retinoschisin OS=Takifugu rubripes GN=xlrs1 PE=3 SV=1
Length = 280
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGK 78
G AW K Q T+ W++I+L V++ QGR E+ Y + Y +
Sbjct: 165 GCAWLSKFQDNTQ---WLQIDLIDAKVVSGILTQGR---CDADEWITKYSLQYRTDEKLN 218
Query: 79 WVRYKDAKGNEMYSY 93
W+ YKD GN Y
Sbjct: 219 WIYYKDQTGNNRVFY 233
>sp|Q0V8T8|CTP5B_MOUSE Contactin-associated protein like 5-2 OS=Mus musculus GN=Cntnap5b
PE=2 SV=1
Length = 1292
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79
G W P+N + +W++++L ITA QGR+G+ +++ +Y + + W
Sbjct: 65 GGWSPEN---SSAHQWLQLDLGNRVEITAVATQGRYGS---SDWVTSYCLIF-SDTGHNW 117
Query: 80 VRYKDAKGNEMYSYV 94
+YK +G+ +++++
Sbjct: 118 QQYK--QGDSIWTFI 130
>sp|O14786|NRP1_HUMAN Neuropilin-1 OS=Homo sapiens GN=NRP1 PE=1 SV=3
Length = 923
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 14 RTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQG 53
R +Y W P REWI+++L + +TA G QG
Sbjct: 307 RLNYPENGWTPGED---SYREWIQVDLGLLRFVTAVGTQG 343
>sp|Q0V8T9|CTP5A_MOUSE Contactin-associated protein like 5-1 OS=Mus musculus GN=Cntnap5a
PE=2 SV=1
Length = 1304
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGN 57
G W P + + ++W++I+L ITA QGR+G+
Sbjct: 65 GGWSPAD---SNAQQWLQIDLQNRVEITAVATQGRYGS 99
>sp|Q0V8T6|CTP5A_RAT Contactin-associated protein like 5-1 OS=Rattus norvegicus
GN=Cntnap5a PE=2 SV=1
Length = 1305
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGN 57
G W P + + ++W++I+L ITA QGR+G+
Sbjct: 65 GGWSP---VDSNAQQWLQIDLGNRVEITAVATQGRYGS 99
>sp|B2S3N6|SYS_TREPS Serine--tRNA ligase OS=Treponema pallidum subsp. pallidum (strain
SS14) GN=serS PE=3 SV=1
Length = 426
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 53 GRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDAKGNEMYSYVQTGT 98
GR G G + + DY +L VRYKDA+G + Y ++ GT
Sbjct: 341 GRQGGSWGEVTSASNCTDYQARRLN--VRYKDAEGKKHYVHMLNGT 384
>sp|O83653|SYS_TREPA Serine--tRNA ligase OS=Treponema pallidum (strain Nichols) GN=serS
PE=3 SV=1
Length = 426
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 53 GRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDAKGNEMYSYVQTGT 98
GR G G + + DY +L VRYKDA+G + Y ++ GT
Sbjct: 341 GRQGGSWGEVTSASNCTDYQARRLN--VRYKDAEGKKHYVHMLNGT 384
>sp|P79795|NRP1_CHICK Neuropilin-1 OS=Gallus gallus GN=NRP1 PE=2 SV=1
Length = 914
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 1 MTKRYEEIYE-DMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ 59
++ +Y I+ + R +Y W P REWI+++L + ++ G QG
Sbjct: 291 VSSQYSAIWSSERSRLNYPENGWTPGEDSV---REWIQVDLGLLRFVSGIGTQGAISKET 347
Query: 60 GAE-FTEAYLID 70
E + + Y +D
Sbjct: 348 KKEYYLKTYRVD 359
>sp|Q9QWJ9|NRP1_RAT Neuropilin-1 OS=Rattus norvegicus GN=Nrp1 PE=1 SV=1
Length = 922
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 14 RTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQG 53
R +Y W P REWI+++L + +TA G QG
Sbjct: 307 RLNYPENGWTPGEDSY---REWIQVDLGLLRFVTAVGTQG 343
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,527,260
Number of Sequences: 539616
Number of extensions: 1650181
Number of successful extensions: 2674
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2665
Number of HSP's gapped (non-prelim): 23
length of query: 101
length of database: 191,569,459
effective HSP length: 70
effective length of query: 31
effective length of database: 153,796,339
effective search space: 4767686509
effective search space used: 4767686509
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)