Query psy4861
Match_columns 101
No_of_seqs 106 out of 771
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:34:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wuh_A Discoidin domain recept 100.0 9.7E-30 3.3E-34 177.2 8.2 94 4-98 42-136 (178)
2 3hny_M Coagulation factor VIII 100.0 3E-29 1E-33 171.6 7.6 89 5-98 33-121 (159)
3 4ag4_A Epithelial discoidin do 99.9 3.8E-28 1.3E-32 184.4 8.9 94 4-98 30-123 (351)
4 1czt_A Protein (coagulation fa 99.9 1.2E-27 4E-32 163.6 8.5 90 4-98 30-121 (160)
5 4deq_A Neuropilin-1, vascular 99.9 9E-27 3.1E-31 167.0 8.1 88 5-98 31-119 (218)
6 3bn6_A Lactadherin; anticoagul 99.9 3.3E-26 1.1E-30 155.8 8.2 89 5-98 32-122 (158)
7 2vm9_A Discoidin-2, discoidin 99.9 6.6E-26 2.3E-30 165.5 8.8 85 4-98 26-118 (257)
8 4gz9_A Neuropilin-1, A5 protei 99.9 4.1E-25 1.4E-29 175.5 8.9 89 4-98 281-370 (577)
9 2wn3_A Discoidin-1 subunit A; 99.9 1.3E-24 4.6E-29 158.5 8.5 83 4-98 26-117 (254)
10 2qqj_A Neuropilin-2; VEGF rece 99.9 7.3E-24 2.5E-28 158.0 8.3 88 5-98 33-121 (325)
11 2qqi_A Neuropilin-1; VEGF rece 99.9 3.7E-23 1.3E-27 153.9 8.2 88 5-98 32-120 (318)
12 4gz9_A Neuropilin-1, A5 protei 99.9 7.7E-23 2.6E-27 162.5 9.6 92 3-98 436-529 (577)
13 2qqj_A Neuropilin-2; VEGF rece 99.9 3E-22 1E-26 149.2 10.0 91 5-98 189-286 (325)
14 2qqo_A Neuropilin-2; VEGF rece 99.9 6.5E-22 2.2E-26 153.1 10.0 91 5-98 318-415 (460)
15 2qqm_A Neuropilin-1; VEGF rece 99.9 1E-21 3.4E-26 151.5 10.3 91 4-98 319-411 (450)
16 2r7e_B Coagulation factor VIII 99.9 1.5E-22 5E-27 165.7 5.5 88 6-98 641-728 (770)
17 1sdd_B Coagulation factor V; c 99.9 3.2E-22 1.1E-26 160.3 7.3 89 5-98 518-608 (647)
18 2qqi_A Neuropilin-1; VEGF rece 99.9 6.3E-22 2.2E-26 147.2 8.0 91 4-98 187-279 (318)
19 2qqo_A Neuropilin-2; VEGF rece 99.9 1.2E-21 4.1E-26 151.6 8.3 88 5-98 162-250 (460)
20 2qqk_A Neuropilin-2; VEGF rece 99.8 1.4E-21 4.7E-26 154.7 8.2 88 5-98 281-369 (579)
21 2qqk_A Neuropilin-2; VEGF rece 99.8 2.7E-21 9.3E-26 153.0 9.5 91 5-98 437-534 (579)
22 2qqm_A Neuropilin-1; VEGF rece 99.8 4.2E-21 1.4E-25 148.0 8.6 88 5-98 164-252 (450)
23 1sdd_B Coagulation factor V; c 99.8 5.6E-21 1.9E-25 153.1 9.5 93 4-98 353-448 (647)
24 2w1s_A Hyaluronoglucosaminidas 99.8 3.4E-21 1.2E-25 135.3 7.3 84 5-97 35-124 (192)
25 2r7e_B Coagulation factor VIII 99.8 1.4E-20 4.7E-25 154.2 4.3 86 6-98 484-571 (770)
26 2v72_A CBM32, EXO-alpha-sialid 99.4 1.6E-12 5.6E-17 84.7 6.8 76 6-97 26-104 (143)
27 2j1a_A Hyaluronidase, CBM32; p 99.1 2E-10 6.8E-15 75.0 7.9 58 20-83 42-99 (150)
28 2jda_A Yecbm32; hypothetical p 99.0 9.4E-10 3.2E-14 71.8 7.0 66 6-84 24-89 (145)
29 4a4a_A Alpha-N-acetylglucosami 98.9 3.1E-09 1E-13 88.6 7.0 67 6-86 42-108 (914)
30 4a41_A GH89_CBM32-5, alpha-N-a 98.9 1.3E-08 4.5E-13 68.6 8.6 63 19-84 56-118 (161)
31 3f2z_A Uncharacterized protein 98.8 2.6E-08 8.8E-13 66.6 8.0 64 18-84 38-102 (159)
32 4a42_A GH89_CBM32-4, alpha-N-a 98.8 8.4E-09 2.9E-13 69.0 5.6 56 17-84 50-106 (149)
33 3ggl_A Putative chitobiase; X- 98.7 4.4E-08 1.5E-12 66.3 8.0 63 19-84 49-112 (169)
34 3eyp_A Putative alpha-L-fucosi 98.6 6.5E-08 2.2E-12 75.7 6.5 61 17-84 352-412 (469)
35 2v5d_A O-GLCNACASE NAGJ; famil 98.6 7.6E-08 2.6E-12 78.6 5.9 51 31-84 637-687 (737)
36 2zxq_A Endo-alpha-N-acetylgala 98.3 6E-08 2E-12 83.1 0.0 62 20-84 1260-1322(1376)
37 4a3z_A GH89_CBM32, alpha-N-ace 98.3 3.7E-06 1.3E-10 57.0 8.0 58 18-84 54-111 (161)
38 1k3i_A Galactose oxidase precu 98.3 1.7E-06 5.9E-11 68.4 6.9 59 19-79 53-113 (656)
39 3ues_A Alpha-1,3/4-fucosidase; 98.1 1.1E-05 3.8E-10 63.2 7.5 63 16-85 376-438 (478)
40 1w8o_A Bacterial sialidase; 3D 98.0 1.5E-05 5E-10 62.5 7.7 63 19-84 489-554 (601)
41 3lei_A Platelet aggregation fa 97.9 2.1E-05 7.1E-10 52.3 5.8 61 19-81 38-101 (153)
42 4gwi_A Lectinolysin, platelet 97.4 0.00033 1.1E-08 46.9 5.5 49 31-81 52-101 (153)
43 3cqo_A FBP32; F-lectin, fucole 97.3 0.00018 6.2E-09 52.2 4.0 48 31-81 194-245 (293)
44 3hnm_A Putative chitobiase; PS 97.3 0.0027 9.2E-08 43.3 9.1 66 19-85 50-117 (172)
45 2j1v_A Fucolectin-related prot 97.2 0.00051 1.7E-08 45.7 4.6 43 31-75 58-100 (151)
46 3cqo_A FBP32; F-lectin, fucole 97.1 0.00057 2E-08 49.5 4.3 43 31-75 48-90 (293)
47 1k12_A Lectin; beta barrel, pr 97.0 0.00054 1.9E-08 45.7 3.6 43 31-75 56-98 (158)
48 2j22_A Fucolectin-related prot 96.9 0.0019 6.6E-08 42.8 5.6 47 31-80 55-103 (148)
49 1tvg_A LOC51668 protein; cell 96.8 0.0047 1.6E-07 41.4 6.9 52 18-82 45-98 (153)
50 2cho_A Glucosaminidase, hexosa 96.7 0.00043 1.5E-08 56.6 1.6 56 20-82 615-671 (716)
51 3gdb_A Endo-D, putative unchar 96.1 0.00097 3.3E-08 55.9 0.0 62 20-87 835-900 (937)
52 2yc2_A IFT25, intraflagellar t 95.9 0.018 6.1E-07 37.6 5.6 54 18-83 37-91 (139)
53 2yfu_A Carbohydrate binding fa 89.9 0.59 2E-05 31.2 4.9 46 33-82 44-93 (155)
54 3gza_A Putative alpha-L-fucosi 87.2 0.79 2.7E-05 35.5 4.7 49 32-85 354-402 (443)
55 4aqs_A Laminin subunit beta-1; 79.8 3.5 0.00012 31.8 5.6 45 32-83 102-147 (525)
56 4aqt_A Laminin subunit gamma-1 62.1 18 0.0006 27.2 5.7 43 34-83 102-145 (375)
57 3zyj_B Netrin-G1; cell adhesio 60.3 11 0.00039 28.9 4.5 44 33-83 131-176 (426)
58 2y38_A Laminin subunit alpha-5 57.4 22 0.00075 27.1 5.5 45 33-83 107-152 (403)
59 3tbd_A Netrin-G2, laminet-2; l 54.8 17 0.00058 27.1 4.5 42 35-83 105-148 (338)
60 4dxt_A SUN domain-containing p 42.3 27 0.00091 23.9 3.6 31 18-53 79-109 (198)
61 3ecq_A Protein SPR0328, endo-a 27.9 13 0.00043 33.0 0.0 37 32-70 1493-1529(1531)
62 3o12_A Uncharacterized protein 26.5 46 0.0016 22.8 2.8 18 66-84 158-175 (221)
63 3mep_A Uncharacterized protein 24.5 54 0.0019 21.9 2.8 18 66-84 129-146 (198)
No 1
>2wuh_A Discoidin domain receptor 2; receptor-peptide complex, transferase, nucleotide-binding, tyrosine-protein kinase; 1.60A {Homo sapiens} PDB: 2z4f_A
Probab=99.96 E-value=9.7e-30 Score=177.19 Aligned_cols=94 Identities=28% Similarity=0.625 Sum_probs=80.7
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCC-CCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEP-REWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~-~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
..+.|++|||+.....+||||+.....|. .|||||||++++.|++|+||||.+.+...+||++|+|+||.|| .+|..|
T Consensus 42 ~~~~p~~aRL~~~~~~~aW~a~~~~~~d~~~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~vt~Y~l~yS~Dg-~~W~~y 120 (178)
T 2wuh_A 42 ESTAAKYGRLDSEEGDGAWCPEIPVEPDDLKEFLQIDLHTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDG-TRWISW 120 (178)
T ss_dssp GGGSGGGCBTTCCSTTSSBCCSSCBBTTBCCCCEEEEEEEEEEEEEEEEECCCGGGTCCCCCSEEEEEEESSS-SSCEEC
T ss_pred cccChhhheecCCCCCCeecCCcCCCCCCCCCEEEEecCCceEEeEEEEecccCCCCccceeEEEEEEEEcCC-CcEEEE
Confidence 35689999999877789999995321245 8999999999999999999999764334689999999999999 999999
Q ss_pred EcCCCcEEEeCcCCCC
Q psy4861 83 KDAKGNEMYSYVQTGT 98 (101)
Q Consensus 83 ~~~~~~~vF~GN~d~~ 98 (101)
++..+.+||.||.|..
T Consensus 121 ~~~~~~kvF~GN~D~~ 136 (178)
T 2wuh_A 121 RNRHGKQVLDGNSNPY 136 (178)
T ss_dssp CCTTSCCCEECCSSSS
T ss_pred ecCCccccccccCCCC
Confidence 9988889999999974
No 2
>3hny_M Coagulation factor VIII; blood clotting, acute phase, blood coagulation, calcium, DIS mutation, disulfide bond, glycoprotein, hemophilia; 1.07A {Homo sapiens} SCOP: b.18.1.2 PDB: 3hnb_M 3hob_M 1d7p_M 1iqd_C 1cfg_A 1fac_A
Probab=99.96 E-value=3e-29 Score=171.56 Aligned_cols=89 Identities=15% Similarity=0.274 Sum_probs=78.6
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
.+.|++||||..+..+||||+. +|..|||||||++++.|++|+||||.+.. ..+||++|+|+||.|| .+|..|++
T Consensus 33 ~~~p~~aRL~~~~~~~aW~a~~---~d~~qwLqVDLg~~~~VtgV~tqG~~~~~-~~~~v~~y~l~yS~Dg-~~W~~~~~ 107 (159)
T 3hny_M 33 TWSPSKARLHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISSSQDG-HQWTLFFQ 107 (159)
T ss_dssp BCCGGGCBTTCCSSSCSBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECEE
T ss_pred ccChhhhhhhcCCCCCccCCCC---CCCCCeEEcccCCcEEEEEEEeecCCCCC-ccceEEEEEEEEEECC-CcEEEEec
Confidence 5689999999877789999996 47899999999999999999999986432 3589999999999999 99999998
Q ss_pred CCCcEEEeCcCCCC
Q psy4861 85 AKGNEMYSYVQTGT 98 (101)
Q Consensus 85 ~~~~~vF~GN~d~~ 98 (101)
....+||.||.|..
T Consensus 108 ~~~~~vF~GN~d~~ 121 (159)
T 3hny_M 108 NGKVKVFQGNQDSF 121 (159)
T ss_dssp TTEECCEECCSSSS
T ss_pred CCceEeeeccCCCC
Confidence 76678999999975
No 3
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.8e-28 Score=184.37 Aligned_cols=94 Identities=27% Similarity=0.590 Sum_probs=82.1
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
..+.|++||||...+.+||||+.+..++..|||||||++++.||+|+||||.+.+...+||++|+|+||.|| .+|..|+
T Consensus 30 ~~~~p~~ARLn~~~~~gaW~a~~~~~~d~~qWLQVDLg~~~~VtgV~TQGr~~~g~~~~wVtsY~l~yS~DG-~~W~~y~ 108 (351)
T 4ag4_A 30 DSTAARHSRLESSDGDGAWCPAGSVFPKEEEYLQVDLQRLHLVALVGTQGRHAGGLGKEFSRSYRLRYSRDG-RRWMGWK 108 (351)
T ss_dssp GGGCGGGCBTTCCTTTSSBCCSSCCCSSCCCCEEEEEEEEEEEEEEEEECBCGGGTCCBCCSEEEEEEESSS-SCEEECC
T ss_pred CccChhhhhcccCCCCccccccccccCCCCCEEEecCCCeEEEEEEEEecccCCCCccceEEEEEEEEEeCC-CcEEEEE
Confidence 346899999998888899999963223789999999999999999999999754434689999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+..+.+||.||.|..
T Consensus 109 d~~~~kvF~GN~D~~ 123 (351)
T 4ag4_A 109 DRWGQEVISGNEDPE 123 (351)
T ss_dssp CTTSCCCEECCSSSS
T ss_pred CCCccccccccCCCC
Confidence 988889999999975
No 4
>1czt_A Protein (coagulation factor V); membrane-binding, discoidin family, calcium- independent, blood clotting; 1.87A {Homo sapiens} SCOP: b.18.1.2 PDB: 1czs_A 1czv_A
Probab=99.95 E-value=1.2e-27 Score=163.55 Aligned_cols=90 Identities=21% Similarity=0.375 Sum_probs=77.6
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
..+.|++|||+..+..+||||.. ++..|||||||++++.|++|+|||+.+.+ ..+||++|+|+||.|| .+|..|.
T Consensus 30 ~~~~p~~aRL~~~~~~~~W~a~~---~~~~qwLqVDLg~~~~Vt~v~tqG~~~~~-~~~~v~~y~l~yS~Dg-~~W~~~~ 104 (160)
T 1czt_A 30 DYWEPFRARLNAQGRVNAWQAKA---NNNKQWLEIDLLKIKKITAIITQGCKSLS-SEMYVKSYTIHYSEQG-VEWKPYR 104 (160)
T ss_dssp CBCCGGGCBTTCCSSSCSEECSS---CSTTCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECC
T ss_pred cccCcccceecCCCCCCcccCCC---CCCCcEEEEeCCCcEEEEEEEEeCcCCCC-cccEEEEEEEEEECCC-CcEEEEE
Confidence 35689999999876678999995 36789999999999999999999986422 2579999999999999 9999998
Q ss_pred cCCC--cEEEeCcCCCC
Q psy4861 84 DAKG--NEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~--~~vF~GN~d~~ 98 (101)
+..+ .+||.||.|..
T Consensus 105 ~~~~~~~~vF~GN~d~~ 121 (160)
T 1czt_A 105 LKSSMVDKIFEGNTNTK 121 (160)
T ss_dssp CTTCSSCCCEECCSSSS
T ss_pred cCCCcccccccCcCCCC
Confidence 8654 57999999974
No 5
>4deq_A Neuropilin-1, vascular endothelial growth factor; coagulation factor domain, heparin binding domain, angiogene protein binding-cytokine complex; 2.65A {Homo sapiens} PDB: 1kmx_A 1vgh_A 2vgh_A
Probab=99.94 E-value=9e-27 Score=167.01 Aligned_cols=88 Identities=20% Similarity=0.405 Sum_probs=76.6
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC-ccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ-GAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~-~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|++||||.. .+||||.. ++..|||||||++++.|++|+|||+.+.+. ..+||++|+|+||.|| .+|..|+
T Consensus 31 ~~~P~~ARLn~~--~~aW~a~~---~d~~qWLQVDLg~~~~VtgV~tQG~~~~~~~~~~~VtsY~l~yS~DG-~~W~~y~ 104 (218)
T 4deq_A 31 NWSAERSRLNYP--ENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIK 104 (218)
T ss_dssp GGCGGGCBTTCS--SCCBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECE
T ss_pred CCChhHeEEcCC--CCeECCCC---CCCCCeEEEeCCCcEEEEEEEEEeccCCCCCccceEEEEEEEEEeCC-CceEEee
Confidence 568999999974 47999995 478999999999999999999999865321 2579999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....+||.||.|..
T Consensus 105 ~~~~~kvF~GN~D~~ 119 (218)
T 4deq_A 105 EGNKPVLFQGNTNPT 119 (218)
T ss_dssp ETTEECCEECCSSSS
T ss_pred cceeeecccCcCCCC
Confidence 976678999999975
No 6
>3bn6_A Lactadherin; anticoagulation, anti-coagulation, anticoagulant, anti- coagulant, membrane binding, phosphatidyl-serine binding; 1.67A {Bos taurus} PDB: 2pqs_A
Probab=99.93 E-value=3.3e-26 Score=155.84 Aligned_cols=89 Identities=20% Similarity=0.332 Sum_probs=76.5
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
.+.|++|||+..+..++|||.. ++..|||||||++++.|++|+|||+...+ ..+||++|+|+||.|| .+|..|.+
T Consensus 32 ~~~p~~arL~~~~~~~~W~~~~---~~~~qwlqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~i~~S~Dg-~~W~~~~~ 106 (158)
T 3bn6_A 32 SWFPYYARLDNQGKFNAWTAQT---NSASEWLQIDLGSQKRVTGIITQGARDFG-HIQYVAAYRVAYGDDG-VTWTEYKD 106 (158)
T ss_dssp BCCGGGCBTTCCSSSCSEECSS---CCTTCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEEEEEEESSS-SSCEECCC
T ss_pred ccChhheEEcCCCCCCcccCCC---CCCCCEEEEeCCCceEEEEEEeeCCCCCC-CCceEEEEEEEEECCC-CceEEEEc
Confidence 5789999999876679999996 36789999999999999999999986432 2469999999999999 99999988
Q ss_pred C-CC-cEEEeCcCCCC
Q psy4861 85 A-KG-NEMYSYVQTGT 98 (101)
Q Consensus 85 ~-~~-~~vF~GN~d~~ 98 (101)
. .+ .+||.||.|..
T Consensus 107 ~~~~~~~~F~GN~d~~ 122 (158)
T 3bn6_A 107 PGASESKIFPGNMDNN 122 (158)
T ss_dssp TTCSSCCCEECCSSSS
T ss_pred CCCCceeeeeccCCCC
Confidence 6 33 47999999864
No 7
>2vm9_A Discoidin-2, discoidin II; DDR, lectin, aggregation, cell adhesion; 1.75A {Dictyostelium discoideum} PDB: 2vmc_A* 2vmd_A* 2vme_A*
Probab=99.93 E-value=6.6e-26 Score=165.47 Aligned_cols=85 Identities=14% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCcCcccccCCC--------CCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC
Q psy4861 4 RYEEIYEDMVRTDY--------NGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK 75 (101)
Q Consensus 4 ~y~~~~~aRL~~~~--------~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg 75 (101)
..+.|++||||... ..+||||+. ++..|||||||++++.|++|+|||+.+. .+||++|+|+||.||
T Consensus 26 ~~~~p~~aRLn~~~~~~~~~~~~~~~W~a~~---~d~~qwLqVDLg~~~~Vt~V~tQG~~~~---~~~vt~Y~l~yS~Dg 99 (257)
T 2vm9_A 26 ADHGVKNSILNFSNSKDASRFDGSESWSSSV---LDKNQFIVAGSDSVKHFVAISTQGRGDH---DQWVTSYKLRYTLDN 99 (257)
T ss_dssp GGGSGGGCBTTCCCCCCTTSCCCCSSEECSS---CSTTCCEEEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESSS
T ss_pred CCCCcCeEEeCCcccccccccCCCCeeeCCC---CCCCcEEeecCCCcEEEEEEEEeCCccC---CceEEEEEEEEEcCC
Confidence 46789999999852 469999995 4789999999999999999999999753 589999999999999
Q ss_pred CCCcEEEEcCCCcEEEeCcCCCC
Q psy4861 76 LGKWVRYKDAKGNEMYSYVQTGT 98 (101)
Q Consensus 76 ~~~W~~y~~~~~~~vF~GN~d~~ 98 (101)
..|..|++.. ||.||.|..
T Consensus 100 -~~W~~y~~~~---vF~GN~d~~ 118 (257)
T 2vm9_A 100 -VNWVEYNNGE---IINANKDRN 118 (257)
T ss_dssp -SCEEEGGGGC---CEECCSSSS
T ss_pred -CcEEEEcCCc---eecccCCCC
Confidence 9999998754 999999974
No 8
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.92 E-value=4.1e-25 Score=175.52 Aligned_cols=89 Identities=18% Similarity=0.405 Sum_probs=77.7
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC-ccceeeEEEEEEECCCCCCcEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ-GAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~-~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
..+.|++||||.. ++||||+. ++..|||||||++++.||+|+||||.+... ..+||++|+|+||.|| ..|..|
T Consensus 281 ~~~~p~~aRLn~~--~~aW~~~~---~~~~qwlqVDl~~~~~it~v~tQG~~~~~~~~~~~v~~y~v~~s~dg-~~w~~y 354 (577)
T 4gz9_A 281 TNWSVERSRLNYP--ENGWTPGE---DSYKEWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYRVDISSNG-EDWISL 354 (577)
T ss_dssp GGGCGGGCBTTCS--SCCBCCSS---CCTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEEC
T ss_pred CCCCcccccccCC--CCcccCCC---CCCCeEEEEcCCCEEEEEEEEccCCCCCCCCcceeEEEEEEEEEcCC-CcEEEE
Confidence 3578999999864 57899996 478999999999999999999999865432 2469999999999999 999999
Q ss_pred EcCCCcEEEeCcCCCC
Q psy4861 83 KDAKGNEMYSYVQTGT 98 (101)
Q Consensus 83 ~~~~~~~vF~GN~d~~ 98 (101)
++..+.+||.||.|..
T Consensus 355 ~~~~~~~vf~GN~d~~ 370 (577)
T 4gz9_A 355 KEGNKAIIFQGNTNPT 370 (577)
T ss_dssp BSSSSBCCEECCSSSS
T ss_pred ecCCCceEEeCCCCCC
Confidence 9988889999999975
No 9
>2wn3_A Discoidin-1 subunit A; type-H lectin, cell adhesion, discoidin domain, lectin; HET: NGA GAL 1PG; 1.59A {Dictyostelium discoideum} PDB: 2w94_A* 2wn2_A* 2w95_A*
Probab=99.91 E-value=1.3e-24 Score=158.53 Aligned_cols=83 Identities=16% Similarity=0.348 Sum_probs=73.7
Q ss_pred CCCCcCcccccCCC-------CCceeeeCCCCCCCCCCeEEEecCC--cEEEEEEEecCCcCCCCccceeeEEEEEEECC
Q psy4861 4 RYEEIYEDMVRTDY-------NGGAWCPKNQITTEPREWIEINLHF--VHVITATGVQGRFGNGQGAEFTEAYLIDYWRP 74 (101)
Q Consensus 4 ~y~~~~~aRL~~~~-------~~gAW~~~~~~~~d~~qwLQVDL~~--~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~d 74 (101)
..+.|++||||... ..+||||+. +|.+||| ||++ ++.|++|+||||.+. .+||++|+|+||.|
T Consensus 26 ~~~~p~~aRLn~~~~~~~~~~~~~aW~a~~---~d~~qwL--DLg~~~~~~VtgV~tQG~~~~---~~~VtsY~l~yS~d 97 (254)
T 2wn3_A 26 GVHTQFNSALNYKNNGTNTIDGSEAWCSSI---VDTNQYI--VAGCEVPRTFMCVALQGRGDA---DQWVTSYKIRYSLD 97 (254)
T ss_dssp TTSSGGGCBTTCCCCTTCGGGCCSSEECSS---CSTTCCE--EEEEEEEEEEEEEEEECCSSS---SCEEEEEEEEEESS
T ss_pred CCCCcceEEeCCcccccccCCCCCeeeCCC---CCchheE--EcCCCeEEEEEEEEEeCCCCC---CCceEEEEEEEECC
Confidence 46789999999763 479999996 4789999 9999 999999999999743 58999999999999
Q ss_pred CCCCcEEEEcCCCcEEEeCcCCCC
Q psy4861 75 KLGKWVRYKDAKGNEMYSYVQTGT 98 (101)
Q Consensus 75 g~~~W~~y~~~~~~~vF~GN~d~~ 98 (101)
| ..|..|++. +||.||.|..
T Consensus 98 g-~~W~~y~~~---~vF~GN~d~~ 117 (254)
T 2wn3_A 98 N-VSWFEYRNG---AAVTGVTDRN 117 (254)
T ss_dssp S-SSCEEGGGG---CCEECCSSSS
T ss_pred C-CcEEEecCC---cEEeccCCCC
Confidence 9 999999875 8999999975
No 10
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.90 E-value=7.3e-24 Score=157.95 Aligned_cols=88 Identities=17% Similarity=0.436 Sum_probs=75.8
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC-ccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ-GAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~-~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|++|||+.. .++|||+. ++..|||||||++++.|++|+|||+.+... ..+||++|+|+||.|| .+|..|+
T Consensus 33 ~~~p~~arl~~~--~~~W~~~~---~~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~ 106 (325)
T 2qqj_A 33 RWTPQQSRLHGD--DNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYR 106 (325)
T ss_dssp SSCGGGCBTTCS--SCCBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECE
T ss_pred ccCccceeecCC--CCccccCc---CCcCccEEEeccceEEEEEEEeeCCcCCCCCcceeEEEEEEEEEcCC-cEeEEee
Confidence 478999999974 57899996 367899999999999999999999864321 2479999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....+||.||.|..
T Consensus 107 ~~~~~~~f~Gn~d~~ 121 (325)
T 2qqj_A 107 HGKNHKVFQANNDAT 121 (325)
T ss_dssp ETTEECCEECCSSSS
T ss_pred CCCccEEEeccCCCC
Confidence 877678999999974
No 11
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.88 E-value=3.7e-23 Score=153.90 Aligned_cols=88 Identities=20% Similarity=0.410 Sum_probs=75.3
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCC-CccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNG-QGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~-~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|++|||+.. .++|||+. ++..|||||||++++.|++|+|||+.+.. ...+||++|+|+||.|| .+|..|+
T Consensus 32 ~~~p~~arl~~~--~~~W~~~~---~~~~qwlqVDLg~~~~v~~v~tqg~~~~~~~~~~~v~~y~i~~S~Dg-~~W~~~~ 105 (318)
T 2qqi_A 32 NWSAERSRLNYP--ENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIK 105 (318)
T ss_dssp GGCGGGGBTTCS--SCCBCCSS---CCTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECE
T ss_pred cCChhhhhhcCC--CCeEcCCC---CCCCceEEEccCCcEEEEeeeeeccccCCCCccEeEEEEEEEEecCC-CeEEEEe
Confidence 468999999874 57899995 36789999999999999999999986431 12479999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....+||.||.|..
T Consensus 106 ~~~~~~~f~GN~d~~ 120 (318)
T 2qqi_A 106 EGNKPVLFQGNTNPT 120 (318)
T ss_dssp ETTEECCEECCSSSS
T ss_pred CCCeeEEEECCcCCC
Confidence 876668999999974
No 12
>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H
Probab=99.88 E-value=7.7e-23 Score=162.50 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=75.3
Q ss_pred CCCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEE
Q psy4861 3 KRYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 3 ~~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
+..+.|++|||+... ++||+.....++.+|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|..|
T Consensus 436 ~~~~~p~~aRL~~~~--~~w~~~~~~~~~~~qwLqVDLg~~~~VtgV~tQG~~~~~-~~~~vtsY~l~yS~Dg-~~W~~~ 511 (577)
T 4gz9_A 436 DRNWMPENIRLVTSR--TGWALPPSPHPYTNEWLQVDLGDEKIVRGVIIQGGKHRE-NKVFMRKFKIAYSNNG-SDWKTI 511 (577)
T ss_dssp STTCCGGGGBTTTCS--SCEEECCCSSCCCSCCEEEEEEEEEEEEEEEEECEESSS-CEECEEEEEEEEESSS-SSCEEC
T ss_pred CCCcChhheeecCCC--CCcccccCCCCCCCceEEEECCCcEEEEEEEEeCCCCCC-cceeEEEEEEEEECCC-CCeEEE
Confidence 456789999998653 457765432346789999999999999999999986543 3579999999999999 999999
Q ss_pred EcCCC--cEEEeCcCCCC
Q psy4861 83 KDAKG--NEMYSYVQTGT 98 (101)
Q Consensus 83 ~~~~~--~~vF~GN~d~~ 98 (101)
++..+ .+||.||.|..
T Consensus 512 ~~~~~~~~kvF~GN~d~~ 529 (577)
T 4gz9_A 512 MDDSKRKAKSFEGNNNYD 529 (577)
T ss_dssp BCTTSSSBCCEECCSSSS
T ss_pred EcCCCCceEEeeCccCCC
Confidence 88654 47999999975
No 13
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental protein, differentiation, glycoprotein, membrane, neurogenesis, transmembrane; 1.95A {Homo sapiens}
Probab=99.87 E-value=3e-22 Score=149.25 Aligned_cols=91 Identities=13% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCC-----CccceeeEEEEEEECCCCCCc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNG-----QGAEFTEAYLIDYWRPKLGKW 79 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~-----~~~~wVt~y~v~ys~dg~~~W 79 (101)
.+.|.+|||+.. .++|||.....++..|||||||++++.|++|+|||+.+.+ ...+||++|+|+||.|| .+|
T Consensus 189 ~~~p~~arL~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~vt~Y~l~yS~dg-~~W 265 (325)
T 2qqj_A 189 LWSPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDW 265 (325)
T ss_dssp CCCGGGGBTTTC--SSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEEECBCCC----CCCCCBCEEEEEEEEESSS-SSC
T ss_pred ccCcchhhhccC--CCccccccccCCCccceeEeccCCceeEEEEEecCCCCCCCccccCcceeEEEEEEEEEeCC-CCe
Confidence 467999999864 4679998422246789999999999999999999987411 23579999999999999 999
Q ss_pred EEEEcCCCc--EEEeCcCCCC
Q psy4861 80 VRYKDAKGN--EMYSYVQTGT 98 (101)
Q Consensus 80 ~~y~~~~~~--~vF~GN~d~~ 98 (101)
..|++..+. +||.||.|..
T Consensus 266 ~~~~~~~~~~~~vF~GN~d~~ 286 (325)
T 2qqj_A 266 EYIQDPRTQQPKLFEGNMHYD 286 (325)
T ss_dssp EECEETTTTEECCEECCSSSS
T ss_pred EEEecCCCCccceeecccCCC
Confidence 999987653 7999999864
No 14
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=153.06 Aligned_cols=91 Identities=13% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCC-----CccceeeEEEEEEECCCCCCc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNG-----QGAEFTEAYLIDYWRPKLGKW 79 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~-----~~~~wVt~y~v~ys~dg~~~W 79 (101)
.+.|.+|||+.. .++|||.....++..|||||||++++.|++|+|||+.+.+ ...+||++|+|+||.|| .+|
T Consensus 318 ~~~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~yS~dg-~~W 394 (460)
T 2qqo_A 318 LWSPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDW 394 (460)
T ss_dssp SCCGGGGBTTTC--SSCBCCSSSSCCTTTCCEEEEEEEEEEEEEEEEECCCCC--CCCGGGCCCEEEEEEEEESSS-SSC
T ss_pred ccCcchhhhccC--CCCcccccccCCCccceEEEcCCCceEEEEEEecCCCCCCCccccccceeEEEEEEEEEeCC-Cce
Confidence 457999999864 4679997322246789999999999999999999987311 23579999999999999 999
Q ss_pred EEEEcCCCc--EEEeCcCCCC
Q psy4861 80 VRYKDAKGN--EMYSYVQTGT 98 (101)
Q Consensus 80 ~~y~~~~~~--~vF~GN~d~~ 98 (101)
..|++..+. +||.||.|..
T Consensus 395 ~~~~~~~~~~~~vF~GN~d~~ 415 (460)
T 2qqo_A 395 EYIQDPRTQQPKLFEGNMHYD 415 (460)
T ss_dssp EECEETTTTEECCEECCSSSS
T ss_pred EEEECCCCCccceeccccCCC
Confidence 999987664 7999999964
No 15
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.86 E-value=1e-21 Score=151.54 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=74.0
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
..+.|.+|||+.. .++||+.....++..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|..|.
T Consensus 319 ~~~~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~Y~i~~S~dg-~~W~~~~ 394 (450)
T 2qqm_A 319 RNWMPENIRLVTS--RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIM 394 (450)
T ss_dssp TTCCGGGGBTTTC--SSCEEECCCSSCCCSCCEEEEEEEEEEEEEEEEECCSCTT-TCCCEEEEEEEEESSS-SSCEECB
T ss_pred cccCchhhhcccc--CCcccccccccCCcCceEEEeCCCcEEEEEEEecCccCCC-CcEEEEEEEEEEECCC-CcEEEEE
Confidence 4567999999874 5789964111236789999999999999999999986432 2579999999999999 9999998
Q ss_pred cCCC--cEEEeCcCCCC
Q psy4861 84 DAKG--NEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~--~~vF~GN~d~~ 98 (101)
+... .+||.||.|..
T Consensus 395 ~~~~~~~~~F~GN~d~~ 411 (450)
T 2qqm_A 395 DDSKRKAKSFEGNNNYD 411 (450)
T ss_dssp CTTSSSBCCEECCSSSS
T ss_pred cCCCCcccEecCcCCCC
Confidence 8653 58999999864
No 16
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.86 E-value=1.5e-22 Score=165.75 Aligned_cols=88 Identities=15% Similarity=0.284 Sum_probs=78.0
Q ss_pred CCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 6 EEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 6 ~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
+.|.+|||+..+..+||||.. ++..|||||||++++.|++|+|||+.+.. ..+||++|+|+||.|| .+|..|++.
T Consensus 641 ~~P~~ARL~~~~~~~aW~a~~---~d~~qwLQVDLg~~~~VtgV~tQG~~~~~-~~~~VtsY~l~yS~DG-~~W~~y~~~ 715 (770)
T 2r7e_B 641 WSPSKARLHLQGRSNAWRPQV---NNPKEWLQVDFQKTMKVTGVTTQGVKSLL-TSMYVKEFLISSSQDG-HQWTLFFQN 715 (770)
T ss_dssp CCGGGCBTTCCSTTCSBCCSS---CCSSCCEEECCSSCCCBCCEEECCCCCTT-CCCCCCEEEECCBSST-TCBCCCBCS
T ss_pred ccccceeecCCCCCceEECCC---CCCCceEEEccccceEEEEEEEeCCcCcC-cccceEEEEEEEEcCC-CcEEEEecC
Confidence 579999999877789999995 47789999999999999999999996532 3579999999999999 999999987
Q ss_pred CCcEEEeCcCCCC
Q psy4861 86 KGNEMYSYVQTGT 98 (101)
Q Consensus 86 ~~~~vF~GN~d~~ 98 (101)
+..+||.||.|..
T Consensus 716 g~~kvF~GN~D~~ 728 (770)
T 2r7e_B 716 GKVKVFQGNQDSF 728 (770)
T ss_dssp SSBCCEECCSCSS
T ss_pred CceeecccCCCCC
Confidence 6778999999975
No 17
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.86 E-value=3.2e-22 Score=160.25 Aligned_cols=89 Identities=20% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
.+.|.+|||+..+..+||||.. ++..|||||||++++.|++|+|||+.+.+ ..+||++|+|+||.|| .+|..|++
T Consensus 518 ~~~p~~arL~~~g~~~~W~a~~---~~~~qwLqVDLg~~~~vt~v~tqg~~~~~-~~~~v~~y~l~~S~dg-~~W~~~~~ 592 (647)
T 1sdd_B 518 YWEPFLARLNAQGRVNAWQAKA---NNNNQWLQIDLLKIKKITAIVTQGCKSLS-SEMYVKSYTIHYSDQG-TDWKPYRE 592 (647)
T ss_dssp ECCGGGCBSSCCSSSCSEECSS---CSSCCCEEEEEEEEEEEEEEEEECEEETT-EEEEEEEECEEEESSS-SCCEECCC
T ss_pred ccCccccccccCCCcccccCCC---CCCCcEEEEeCCCceEEEEEEeecCCCCC-CCcceEEEEEEEECCC-CcEEEEEc
Confidence 4679999999876778999985 36789999999999999999999986432 2579999999999999 99999998
Q ss_pred CCC--cEEEeCcCCCC
Q psy4861 85 AKG--NEMYSYVQTGT 98 (101)
Q Consensus 85 ~~~--~~vF~GN~d~~ 98 (101)
..+ .++|.||.|..
T Consensus 593 ~~~~~~~~F~GN~d~~ 608 (647)
T 1sdd_B 593 KSSMVDKIFEGNNNVR 608 (647)
T ss_dssp SSCSSCCCEECCSSSS
T ss_pred CCCcceeeeeccCCCC
Confidence 765 47999999964
No 18
>2qqi_A Neuropilin-1; VEGF receptor, semaphorin receptor, angiogenesis, developmen protein, differentiation, glycoprotein, heparan sulfate, ME neurogenesis; 1.80A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 PDB: 2orz_A 2orx_A 2qqn_A 3i97_A* 1kex_A
Probab=99.86 E-value=6.3e-22 Score=147.24 Aligned_cols=91 Identities=15% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
..+.|.+|||+.. .++||+.....++..|||||||++++.|++|+|||+.... ..+||++|+|+||.|| .+|..|.
T Consensus 187 ~~~~p~~arl~~~--~~~W~~~~a~~~~~~qwLqVDLg~~~~Vt~V~tqg~~~~~-~~~~v~~Y~l~~S~dg-~~W~~~~ 262 (318)
T 2qqi_A 187 RNWMPENIRLVTS--RSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGGKHRE-NKVFMRKFKIGYSNNG-SDWKMIM 262 (318)
T ss_dssp TTCCGGGGBTTCC--CCSCSBCCCTTCCSCCCEEEEEEEEEEEEEEEEEECCCTT-CCCCCCCEEEEEESSS-SSCEECB
T ss_pred cccCchhhhhccc--CCceeCcccccCCcCcEEEEeCCCceEEEEEEEcCccCCC-CCeEEEEEEEEEECCC-CCEEEEE
Confidence 4568999999874 4689974111235789999999999999999999986532 2579999999999999 9999998
Q ss_pred cCCC--cEEEeCcCCCC
Q psy4861 84 DAKG--NEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~--~~vF~GN~d~~ 98 (101)
+... .++|.||.|..
T Consensus 263 ~~~~~~~~~F~GN~d~~ 279 (318)
T 2qqi_A 263 DDSKRKAKSFEGNNNYD 279 (318)
T ss_dssp CTTSSSBCCBCCCSSSS
T ss_pred cCCCccccccccccCCC
Confidence 8653 57999999864
No 19
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Probab=99.85 E-value=1.2e-21 Score=151.56 Aligned_cols=88 Identities=17% Similarity=0.436 Sum_probs=75.6
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC-ccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ-GAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~-~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|.+|||+.. .+||||.. ++..|||||||+.++.|++|+|||+.+... ..+||++|+|+||.|| ..|..|+
T Consensus 162 ~~~p~~arl~~~--~~~W~~~~---~~~~~wlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~ 235 (460)
T 2qqo_A 162 RWTPQQSRLHGD--DNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYR 235 (460)
T ss_dssp SSCGGGCBTTCS--SCCBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECE
T ss_pred ccChhhhhhcCC--CceeeCCC---CCcceeEeccCCceEEEEEEEeecCCCCCCCccceEEEEEEEEEcCC-CCeeEec
Confidence 468999999974 47899996 367899999999999999999999865321 2469999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....++|.||.|..
T Consensus 236 ~~~~~~~F~Gn~d~~ 250 (460)
T 2qqo_A 236 HGKNHKVFQANNDAT 250 (460)
T ss_dssp ETTEECCEECCSSSS
T ss_pred CCCccEEEecccCCC
Confidence 876668999999975
No 20
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.85 E-value=1.4e-21 Score=154.70 Aligned_cols=88 Identities=17% Similarity=0.436 Sum_probs=75.9
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC-ccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ-GAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~-~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|.+|||+.. .+||||+. ++..|||||||++++.|++|+|||+.+... ..+||++|+|+||.|| ..|..|+
T Consensus 281 ~~~p~~arl~~~--~~~W~~~~---~~~~qwlqVDLg~~~~vt~v~tqG~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~ 354 (579)
T 2qqk_A 281 RWTPQQSRLHGD--DNGWTPNL---DSNKEYLQVDLRFLTMLTAIATQGAISRETQNGYYVKSYKLEVSTNG-EDWMVYR 354 (579)
T ss_dssp CSCGGGCBTTCS--SCCBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSCEECE
T ss_pred ccCcchhhccCC--CceecCCC---CCCCceEEeecceeEEEEEEEccCCccCCCCcccceEEEEEEEECCC-Cceeeee
Confidence 468999999874 47899995 377999999999999999999999864321 2479999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....+||.||.|..
T Consensus 355 ~~~~~~~f~GN~d~~ 369 (579)
T 2qqk_A 355 HGKNHKVFQANNDAT 369 (579)
T ss_dssp ETTEECCEECCSSSS
T ss_pred cCCcceEEcCCCCCC
Confidence 977778999999974
No 21
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Probab=99.85 E-value=2.7e-21 Score=153.00 Aligned_cols=91 Identities=13% Similarity=0.295 Sum_probs=73.4
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCC-----CccceeeEEEEEEECCCCCCc
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNG-----QGAEFTEAYLIDYWRPKLGKW 79 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~-----~~~~wVt~y~v~ys~dg~~~W 79 (101)
.+.|.+|||+.. ..+|||+....++..|||||||++++.|++|+|||+.+.+ ...+||++|+|+||.|| .+|
T Consensus 437 ~~~p~~arl~~~--~~~W~~~~~~~~~~~qwLqVDLg~~~~Vt~V~tqG~~~~~~~~~~~~~~~v~~Y~l~~S~dg-~~W 513 (579)
T 2qqk_A 437 LWSPSAARLVSS--RSGWFPRIPQAQPGEEWLQVDLGTPKTVKGVIIQGARGGDSITAVEARAFVRKFKVSYSLNG-KDW 513 (579)
T ss_dssp -CCGGGGBTTTC--SSCBCCSSTTCCTTTCCEEEEEEEEEEEEEEEEECBC---------CCBCEEEEEEEEESSS-SCC
T ss_pred ccCchhheeccc--CcCCcccccccCCccceEEEecCCceEEEEEEeCCCCCCCCccccccceeeEEEEEEEEcCC-Cce
Confidence 467999999864 4679997422346789999999999999999999987311 23579999999999999 999
Q ss_pred EEEEcCCC--cEEEeCcCCCC
Q psy4861 80 VRYKDAKG--NEMYSYVQTGT 98 (101)
Q Consensus 80 ~~y~~~~~--~~vF~GN~d~~ 98 (101)
..|++..+ .+||.||.|..
T Consensus 514 ~~~~~~~~~~~~vf~GN~d~~ 534 (579)
T 2qqk_A 514 EYIQDPRTQQPKLFEGNMHYD 534 (579)
T ss_dssp EECBCTTTSSBCCEECCSSSS
T ss_pred eEEEcCCCCceeeeeCccCCC
Confidence 99998765 38999999864
No 22
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Probab=99.84 E-value=4.2e-21 Score=148.04 Aligned_cols=88 Identities=20% Similarity=0.410 Sum_probs=75.3
Q ss_pred CCCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCC-CccceeeEEEEEEECCCCCCcEEEE
Q psy4861 5 YEEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNG-QGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 5 y~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~-~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+.|++|||+.. .++|||+. ++..|||||||++++.|++|+|||+.+.. ...+||++|+|+||.|| .+|..|+
T Consensus 164 ~~~p~~arl~~~--~~~W~~~~---~~~~qwlqvDLg~~~~vt~v~tqg~~~~~~~~~~~v~~y~l~~S~dg-~~W~~~~ 237 (450)
T 2qqm_A 164 NWSAERSRLNYP--ENGWTPGE---DSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVSSNG-EDWITIK 237 (450)
T ss_dssp GGCGGGGBTTCS--SCCBCCSS---CSTTCCEEEEEEEEEEEEEEEEECEECTTTCCEEEEEEEEEEEESSS-SSEEECB
T ss_pred cchhhccccccC--CCCccCCC---CCCCceEEEcccceEEEEEEeccCCCCCCCCcceeEEEEEEEEeCCC-CceeEEe
Confidence 467999999864 47899995 36789999999999999999999986531 12479999999999999 9999999
Q ss_pred cCCCcEEEeCcCCCC
Q psy4861 84 DAKGNEMYSYVQTGT 98 (101)
Q Consensus 84 ~~~~~~vF~GN~d~~ 98 (101)
+....+||.||.|..
T Consensus 238 ~~~~~~~F~GN~d~~ 252 (450)
T 2qqm_A 238 EGNKPVLFQGNTNPT 252 (450)
T ss_dssp SSSSBCCEECCSSSS
T ss_pred CCCeeeEeecccCCC
Confidence 876778999999974
No 23
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.84 E-value=5.6e-21 Score=153.08 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=76.6
Q ss_pred CCCCcCcccccCCCCCceeeeCCCCC-CCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEE
Q psy4861 4 RYEEIYEDMVRTDYNGGAWCPKNQIT-TEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 4 ~y~~~~~aRL~~~~~~gAW~~~~~~~-~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
.++.|++|||++....+||||+.... .+..|||||||++++.|++|+|||+.+. ...+||++|+|+||.|| .+|..|
T Consensus 353 ~~~~p~~arl~~~~~~~~W~~~~~~~~~~~~qwlqVDLg~~~~vt~v~tqg~~~~-~~~~~v~~y~i~yS~Dg-~~W~~~ 430 (647)
T 1sdd_B 353 GYWEPKLARLNNGGSYNAWIAEKLSTEFNPEPWIQVDMQKEVLLTGIQTQGAKHY-LKPYYTTEFCVAYSLDR-KNWRIF 430 (647)
T ss_dssp TTCCGGGCBTTCCSSSCSEECSCCCCSSCCCSCEEEEEEEEEEEEEEEEECEESS-SSEEEEEEEEEEEESSS-SSCEEC
T ss_pred cccccceeeecCCCCcccccCCCCcccccccceEEeccCCeEEEEEEEEcCCCCC-CCccEEEEEEEEEEcCC-CceEEe
Confidence 35789999999876678999996411 0237999999999999999999998642 12589999999999999 999999
Q ss_pred EcCCC--cEEEeCcCCCC
Q psy4861 83 KDAKG--NEMYSYVQTGT 98 (101)
Q Consensus 83 ~~~~~--~~vF~GN~d~~ 98 (101)
++... .++|.||.|.+
T Consensus 431 ~~~~~~~~~~f~gn~d~~ 448 (647)
T 1sdd_B 431 KGNSTRNVMYFGGNSDAS 448 (647)
T ss_dssp CSSCSSSSCCEECCSSSS
T ss_pred cccCCCcceEecCCCCCC
Confidence 87653 57999999974
No 24
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate binding module, toxin, secreted, virulence, hydrolase, glycosidase; HET: MSE BTB; 1.45A {Clostridium perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Probab=99.84 E-value=3.4e-21 Score=135.32 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=68.5
Q ss_pred CCCcCcccccCCC-CCceeeeC----CCCCCCCCCeEEEecCCcEEEEEE-EecCCcCCCCccceeeEEEEEEECCCCCC
Q psy4861 5 YEEIYEDMVRTDY-NGGAWCPK----NQITTEPREWIEINLHFVHVITAT-GVQGRFGNGQGAEFTEAYLIDYWRPKLGK 78 (101)
Q Consensus 5 y~~~~~aRL~~~~-~~gAW~~~----~~~~~d~~qwLQVDL~~~~~It~V-~TQGr~~~~~~~~wVt~y~v~ys~dg~~~ 78 (101)
.+.|..|||+... ..+||||. . .+..|||||||++++.|++| +||||.+.+ ..+||++|+|+||.|| ..
T Consensus 35 ~~~p~~arL~dg~~~t~aW~a~~~~~~---~~~~qwLQVDLg~~~~VtgV~~tQG~~~~~-~~~~vt~Y~l~yS~DG-~~ 109 (192)
T 2w1s_A 35 VYEGNEANLLDGDDNTGVWYKTLNGDT---SLAGEFIGLDLGKEIKLDGIRFVIGKNGGG-SSDKWNKFKLEYSLDN-ES 109 (192)
T ss_dssp EEEECGGGGSSSCTTCCEEEECHHHHC---BCTTCEEEEEEEEEEEEEEEEEEECCSSTT-TTCCCSEEEEEEESSS-SS
T ss_pred ccCChHHheeCCCCCcCEEeCCccccc---CCCCceEEEECCCeEEEEEEEEEcCCCCCC-CCCeEEEEEEEEEcCC-CC
Confidence 3578999999754 34699993 3 36789999999999999999 999997543 2479999999999999 99
Q ss_pred cEEEEcCCCcEEEeCcCCC
Q psy4861 79 WVRYKDAKGNEMYSYVQTG 97 (101)
Q Consensus 79 W~~y~~~~~~~vF~GN~d~ 97 (101)
|..|.+..+ .||.|.
T Consensus 110 W~~~~~~~~----~GN~d~ 124 (192)
T 2w1s_A 110 WTTIKEYDK----TGAPAG 124 (192)
T ss_dssp CEEEEEEEC----TTCCSS
T ss_pred eEEEecCCc----cCCcCC
Confidence 999987543 677665
No 25
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=99.80 E-value=1.4e-20 Score=154.15 Aligned_cols=86 Identities=19% Similarity=0.263 Sum_probs=74.2
Q ss_pred CCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 6 EEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 6 ~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
+.|++|||+..+..+|||+. +..|||||||++++.|++|+|||+... ...+||++|+|+||.|| .+|..|++.
T Consensus 484 ~~p~~arL~~~~~~~aW~~~-----~~~qwLQVDLg~~~~Vt~V~tQG~~~~-~~~~~v~sY~I~yS~DG-~~W~~y~~~ 556 (770)
T 2r7e_B 484 WAPKLARLHYSGSINAWSTK-----EPFSWIKVDLLAPMIIHGIKTQGARQK-FSSLYISQFIIMYSLDG-KKWQTYRGN 556 (770)
T ss_dssp CCTTCCSSCCSTTCSSEECC-----SSCCCEEEEEEEEEEECBCCCCCEECS-SSEECCSEEEEEEESSS-SSCBCCCCS
T ss_pred cchheEEECCCCCccccccC-----CCCceEEecCCceEEEEEEEEcccCcC-CcccceEEEEEEEecCC-CccEEeecc
Confidence 57999999987777999985 568999999999999999999998642 23579999999999999 999999865
Q ss_pred C--CcEEEeCcCCCC
Q psy4861 86 K--GNEMYSYVQTGT 98 (101)
Q Consensus 86 ~--~~~vF~GN~d~~ 98 (101)
. ..++|.||.|..
T Consensus 557 ~~g~~~vF~GN~D~~ 571 (770)
T 2r7e_B 557 STGTLMVFFGNVDSS 571 (770)
T ss_dssp SSSSSCCCCCCSSTT
T ss_pred cccceeeecCCCCCC
Confidence 3 357999999874
No 26
>2v72_A CBM32, EXO-alpha-sialidase; galactose, bacterial pathogen, carbohydrate-binding module, sugar-binding protein; HET: GAL; 2.25A {Clostridium perfringens}
Probab=99.36 E-value=1.6e-12 Score=84.69 Aligned_cols=76 Identities=11% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCcCcccccCCCC---CceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEE
Q psy4861 6 EEIYEDMVRTDYN---GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 6 ~~~~~aRL~~~~~---~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
..|..++|+.... .++||+.. ...+||||||++++.|++|.+|+|... ...||++|+|+||.|| ..
T Consensus 26 ~~~~~~~~Dg~~~t~w~~~w~~~~----~~~~~l~vDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~---- 94 (143)
T 2v72_A 26 QDPASSAIDGNINTMWHTKWNGSD----ALPQSLSVNLGKARKVSSIAITPRTSG--NNGFITKYEIHAINNG-VE---- 94 (143)
T ss_dssp TBCGGGGSSSCTTCCEECCTTSCS----CSCEEEEEEEEEEEEEEEEEEECCSSC--CTTCEEEEEEEEEETT-EE----
T ss_pred CChHHhccCCCCCCceecCCCCCC----CCCEEEEEECCCCeEEeEEEEEecccC--CCCCEEEEEEEEEcCC-Cc----
Confidence 3456677775432 36788763 367999999999999999999998643 2469999999999998 43
Q ss_pred EcCCCcEEEeCcCCC
Q psy4861 83 KDAKGNEMYSYVQTG 97 (101)
Q Consensus 83 ~~~~~~~vF~GN~d~ 97 (101)
.+||.||.|+
T Consensus 95 -----~~v~~g~~~~ 104 (143)
T 2v72_A 95 -----TLVAEGTWEE 104 (143)
T ss_dssp -----EEEEEEECCS
T ss_pred -----cEEeEEEEcC
Confidence 2577777664
No 27
>2j1a_A Hyaluronidase, CBM32; protein-carbohydrate interaction, glycoside hydrolase, GH84C, hydrolase; HET: GAL; 1.49A {Clostridium perfringens} PDB: 2j1e_A* 2j7m_A*
Probab=99.13 E-value=2e-10 Score=74.97 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=47.6
Q ss_pred ceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEE
Q psy4861 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYK 83 (101)
Q Consensus 20 gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~ 83 (101)
.+||+.. .+..+||+|||++++.|++|.+|+|.+. ...++++|+|++|.|| ..|....
T Consensus 42 s~~~~~~---~~~~~~l~iDLg~~~~i~~v~~~~~~~~--~~~~~~~~~i~~S~Dg-~~w~~v~ 99 (150)
T 2j1a_A 42 SKWSSPA---HEGPHHLTLELDNVYEINKVKYAPRQDS--KNGRITGYKVSVSLDG-ENFTEVK 99 (150)
T ss_dssp CCCSSSC---CCSCCEEEEEEEEEEEEEEEEEECCSSC--CTTEEEEEEEEEESSS-SSEEEEE
T ss_pred ccccCCC---CCCCeEEEEECCCCeEEeEEEEeecCCC--CCCCEEEEEEEEEcCC-CceEEEE
Confidence 4677642 2568999999999999999999998643 2469999999999999 9998643
No 28
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module, sugar-binding protein, pectin, plant cell WALL, galacturonic acid; 1.35A {Yersinia enterocolitica} PDB: 2jd9_A
Probab=99.01 E-value=9.4e-10 Score=71.81 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 6 EEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 6 ~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
+.|.+++... ....||+.. + +||||||++++.|++|.+|++.. .+++++|+|++|.|| .+|..+.+
T Consensus 24 ~~~~~a~Dg~--~~t~W~~~~----~--~~l~vDLg~~~~v~~v~i~~~~~----~~~~~~~~i~~S~Dg-~~w~~~~~ 89 (145)
T 2jda_A 24 HVPANIADGD--VKTRWAASG----E--SWVQLELDKEQSIENILIVPFKP----TERKLKFSIFYSNDG-KNWQPLAE 89 (145)
T ss_dssp BCGGGGGSSC--TTCCEEEES----S--EEEEEEEEEEEEEEEEEEEESST----TTCCEEEEEEEESSS-SSCEEEEE
T ss_pred CCchhcccCC--CCCeECCCC----C--eeEEEECCCceEEEEEEEEeccC----CCceEEEEEEEeCCC-CceEEeee
Confidence 3455554432 357899983 3 99999999999999999999742 369999999999999 99988765
No 29
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2 hydrolase, family 89 glycoside hydrolase, mucin carbohydrate-active enzyme; HET: NDG GAL; 1.90A {Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A* 2vca_A
Probab=98.88 E-value=3.1e-09 Score=88.59 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=53.7
Q ss_pred CCcCcccccCCCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 6 EEIYEDMVRTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 6 ~~~~~aRL~~~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
+.|.+|+-. .....||+. +..|||||||++++.|++|++||. ..++++|+|++|.|| .+|..+.+.
T Consensus 42 ~~p~nAvDG--n~~T~WsS~-----~~~qWLqVDLG~~~~V~~V~l~~~------~~~v~~Y~Ie~S~DG-~~Wt~v~~~ 107 (914)
T 4a4a_A 42 NTADLAIDG--DLSTYWESS-----NDYKWIEVDLGGIYELSKIEIFNK------DEAVYKYNIYASEDG-ENFNKIAYK 107 (914)
T ss_dssp CCGGGGSSS--CTTCCEECC-----SSCCEEEEEEEEEEEEEEEEEECS------SSSCEEEEEEEESSS-SCCEEEEEE
T ss_pred CcHHHeECC--CCCCeEecC-----CCCceEEEECCCeEEEEEEEEEec------CCceEEEEEEEEcCC-CCeEEEEEc
Confidence 456666533 245789998 346999999999999999999982 247899999999999 999998764
Q ss_pred C
Q psy4861 86 K 86 (101)
Q Consensus 86 ~ 86 (101)
.
T Consensus 108 t 108 (914)
T 4a4a_A 108 N 108 (914)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: GAL; 1.55A {Clostridium perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Probab=98.86 E-value=1.3e-08 Score=68.64 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=49.6
Q ss_pred CceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 19 ~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
...|.+.........+||+|||++++.|++|.+|+|.+.. ..++++|+|++|.|| .+|..+.+
T Consensus 56 ~T~W~s~~~~~~~~p~~i~iDLg~~~~I~~v~~~~r~~~~--~~~~~~y~I~~S~DG-~~W~~v~~ 118 (161)
T 4a41_A 56 NTIWHTKYNPVEELPQSITLELGGSYEINKFTYLPRSGAK--NGNITKYELHVSEDG-NNFRKISE 118 (161)
T ss_dssp TCCEECCTTTTCCSCEEEEEEEEEEEEEEEEEEECCSSCC--TTCEEEEEEEEESSS-SCEEEEEE
T ss_pred CCeEEeCCCCCCCCCEEEEEEcCCCEEEeEEEEEecCCCC--CCcEEEEEEEEECCC-CceEEeee
Confidence 4458776321113568999999999999999999986532 469999999999999 99998754
No 31
>3f2z_A Uncharacterized protein BF3579; the present C-terminal domain is predominantly composed of B strands., structural genomics, PSI-2; 1.30A {Bacteroides fragilis} PDB: 2kd7_A
Probab=98.79 E-value=2.6e-08 Score=66.57 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=50.2
Q ss_pred CCceeeeCCCCC-CCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 18 NGGAWCPKNQIT-TEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 18 ~~gAW~~~~~~~-~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
....|++..... ....+||+|||++++.|++|.+|+|.+.. ..++++|+|.+|.|| .+|..+.+
T Consensus 38 ~~T~W~s~~~~~~~~~p~~i~vDLg~~~~i~~v~~~~~~~~~--~~~~~~~~I~~S~Dg-~~W~~v~~ 102 (159)
T 3f2z_A 38 IETFWHSRWQGGSDPLPYEIIIDMNHRVKIAQIELLPRGRGS--NNPIKVVRFEASEDG-TNWESIGQ 102 (159)
T ss_dssp TTCCEECCCTTCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SSCEEEEE
T ss_pred CCCeEEcCCcCCCCCCCEEEEEECCCceEEEEEEEEecCCCC--CCCeeEEEEEEEcCC-CCeEEeEE
Confidence 345688763210 13568999999999999999999986432 469999999999999 99998754
No 32
>4a42_A GH89_CBM32-4, alpha-N-acetylglucosaminidase family protein; hydrolase, family 89 glycoside hydrolase, family 32 carbohyd binding module; HET: MSE; 1.55A {Clostridium perfringens}
Probab=98.79 E-value=8.4e-09 Score=69.01 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=45.7
Q ss_pred CCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEe-cCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 17 YNGGAWCPKNQITTEPREWIEINLHFVHVITATGV-QGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 17 ~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~T-QGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
.....|++.. +..+|+||||++++.|++|.+ ++| ++++.|+|++|.|| .+|..+..
T Consensus 50 n~~T~W~s~~----~~~p~~~VDLg~~~~V~~v~i~~~r-------~~v~~y~I~~S~DG-~~W~~~~~ 106 (149)
T 4a42_A 50 NENTLWVPGQ----EEEKSVTFDLSKEKDISAIDIVSKG-------NSPLKYSIEISNDG-TEWTKIVD 106 (149)
T ss_dssp CTTSCBCCCS----CSSEEEEEEEEEEEECCEEEEEECS-------SSCCCEEEEEESSS-SSCEEEEE
T ss_pred CCCCEEEcCC----CCCCeEEEECCCcEEEEEEEEEcCC-------CCcEEEEEEEEcCC-CeEeEeEE
Confidence 3457899984 246777999999999999999 554 24999999999999 99998643
No 33
>3ggl_A Putative chitobiase; X-RAY, structure genomics, NESG, BTR324A, Q8A9F0_bactn, BT_0865, PSI-2, protein structure initiative; 3.00A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=4.4e-08 Score=66.30 Aligned_cols=63 Identities=13% Similarity=-0.001 Sum_probs=49.6
Q ss_pred CceeeeCCCC-CCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 19 GGAWCPKNQI-TTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 19 ~gAW~~~~~~-~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
...|++.... .....+||+|||++++.|++|.+++|.+.. ..++++|+|.+|.|| .+|..+.+
T Consensus 49 ~T~W~s~~~~~~~~~p~wi~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~I~~S~Dg-~~W~~v~~ 112 (169)
T 3ggl_A 49 ETFWHAKWQGGSDPLPYDIVIDMKQNIQIAQVELLPRGRGS--NNPIKVVEFAASEDN-VNWTPIGR 112 (169)
T ss_dssp SCCEECCCSSCCCCSCEEEEEEEEEEEEEEEEEEEECCTTC--CCCCCEEEEEEESSS-SCCEEEEE
T ss_pred CCceEccCcCCCCCCCEEEEEECCCcEEEeEEEEEecCCCC--CCCeeEEEEEEeCCC-CCcEEeEE
Confidence 4568775321 013578999999999999999999986432 469999999999999 99998754
No 34
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=6.5e-08 Score=75.65 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 17 YNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 17 ~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
.....|+|... +..+||||||+++..|..|++|.+... .++|++|+|++|.|| ..|..+.+
T Consensus 352 d~~TyW~a~~~---~~~~wl~vDLg~~~~vn~V~lqe~i~~---gqrv~~y~Ve~s~DG-~~W~~v~~ 412 (469)
T 3eyp_A 352 EKNTYFAGKDG---EVKADIIFTLPKTIEFDCLMIEEVIEL---GHRTTKWSVEYTVDG-KNWITIPE 412 (469)
T ss_dssp CSSCCEECCTT---CCCEEEEEEEEEEEEEEEEEEEECGGG---CSCEEEEEEEEESSS-SCCEECGG
T ss_pred CCCceEeCCCC---CCCcEEEEECCCCcEEeEEEEeecccC---CCCeEEEEEEEEcCC-CceEEEEe
Confidence 35678999953 568999999999999999999987643 379999999999999 89998654
No 35
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module, glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil; 3.30A {Clostridium perfringens}
Probab=98.56 E-value=7.6e-08 Score=78.61 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
+..+||||||++.+.|++|.+|+|.+. ...+|+.|+|++|.|| .+|..+.+
T Consensus 637 ~~p~wl~VDLg~~~~V~~V~i~~r~~~--~~g~v~~y~I~~S~DG-~~W~~v~~ 687 (737)
T 2v5d_A 637 EGPHHLTLELDNVYEINKVKYAPRQDS--KNGRITGYKVSVSLDG-ENFTEVKT 687 (737)
T ss_dssp CCCCEEEEEEEEEEEEEEEEEECCSSC--CTTEEEEEEEEEESSS-SCCCCSEE
T ss_pred CCCeEEEEECCCcEEEEEEEEEeccCC--CCCceEEEEEEEEcCC-CceEEEEe
Confidence 467999999999999999999998642 2459999999999999 99987653
No 36
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=98.34 E-value=6e-08 Score=83.14 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=0.0
Q ss_pred ceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEEC-CCCCCcEEEEc
Q psy4861 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWR-PKLGKWVRYKD 84 (101)
Q Consensus 20 gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~-dg~~~W~~y~~ 84 (101)
.+|++... +.+.+||||||++++.|++|.+|+|.+.+....||++|+|++|. || .+|..+.+
T Consensus 1260 SaWs~ss~--~~PgqWLqVDLGe~~tIsgf~YqpRqdg~~~NG~VksYkIeVS~dDG-~nWttVa~ 1322 (1376)
T 2zxq_A 1260 TSWSENAV--GNGTAWYQFNLNEPTTINGLRYLPRSGGMNANGKIKGYKITLTLADG-TTKDVVTD 1322 (1376)
T ss_dssp ------------------------------------------------------------------
T ss_pred ecccccCC--CCCceEEEEEcCCcEEEEEEEEecCccCCCCCCceEEEEEEEECCCC-CeEEEEEe
Confidence 57877531 12249999999999999999999997511125699999999999 88 99988754
No 37
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein; hydrolase, family 32 carbohydrate-binding module; HET: MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Probab=98.28 E-value=3.7e-06 Score=57.01 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=45.8
Q ss_pred CCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEc
Q psy4861 18 NGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 18 ~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~ 84 (101)
....|++... +..|||||||++++.|..|...=+. ......|+|+.|.|+ .+|....+
T Consensus 54 ~~T~W~s~~~---~~~~Wi~VDLg~~~~v~~v~i~~~~-----~~~~~~y~IevS~Dg-~~W~~v~~ 111 (161)
T 4a3z_A 54 LSSLWISDNG---AMPANATIDLEGNNFVDFLELHFEK-----EGFRFQFKVEVEDES-GNRETVLD 111 (161)
T ss_dssp TTCCEEBGGG---CSSEEEEEEEEEEEEEEEEEEECSS-----TTCCEEEEEEEECTT-CCEEEEEE
T ss_pred CCCeEEcCCC---CCCeEEEEECCCcEEEeEEEEEECC-----CCceEEEEEEEEcCC-CCEEEEEE
Confidence 3567998852 4679999999999999999886432 134578999999999 99987654
No 38
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.27 E-value=1.7e-06 Score=68.42 Aligned_cols=59 Identities=8% Similarity=0.125 Sum_probs=47.1
Q ss_pred CceeeeCCCC--CCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCc
Q psy4861 19 GGAWCPKNQI--TTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKW 79 (101)
Q Consensus 19 ~gAW~~~~~~--~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W 79 (101)
...|++.... .....+||||||++.+.|++|.+|.|...+ ...+++.|+|++|.|+ .+|
T Consensus 53 ~T~W~s~~~~~~~~~~~~~l~vDLg~~~~i~~v~~~~~~~~~-~~~~~~~y~i~~S~Dg-~~w 113 (656)
T 1k3i_A 53 DTFWHTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGN-QNGWIGRHEVYLSSDG-TNW 113 (656)
T ss_dssp TCCEECCCGGGCCCCSCEEEEEEEEEEEEEEEEEEECCCSSC-CTTCBCEEEEEEESSS-SCC
T ss_pred CCEEEeCCCCCCCCCCCceEEecCCCcEEEEEEEEEecccCC-CCCCeeEEEEEEECCC-CCc
Confidence 4569987530 012579999999999999999999986432 2459999999999999 999
No 39
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=98.06 E-value=1.1e-05 Score=63.24 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 16 DYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 16 ~~~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
......|+|... +..+||+|||+++..|..|.+|-.... .+.|.+|+|+++.++ ..|..+.+.
T Consensus 376 gn~~TyW~a~~~---~~~~~l~idLg~~~~~n~v~IqE~i~~---gqRV~~y~Ve~~~dg-g~W~~va~g 438 (478)
T 3ues_A 376 GNRDTFWRPDAD---DAAPAITLTLPQPTTINAIVIEEAIEH---GQRIEHLRVTGALPD-GTERVLGQA 438 (478)
T ss_dssp SCTTCCBCCCTT---CSSCEEEEEEEEEEEEEEEEEEECGGG---CCCEEEEEEEEECTT-SCEEEEEEE
T ss_pred CCCCceEeCCCC---CCCeeEEEECCCCcEEEEEEEeecccC---CCceEEEEEEEEeCC-CCEEEEEec
Confidence 345678999853 568999999999999999999986543 368999999999998 899987653
No 40
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=98.03 E-value=1.5e-05 Score=62.50 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=48.0
Q ss_pred CceeeeCCCCC--CCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEE-EEc
Q psy4861 19 GGAWCPKNQIT--TEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVR-YKD 84 (101)
Q Consensus 19 ~gAW~~~~~~~--~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~-y~~ 84 (101)
..-|++..... ....+||+|||++.+.|++|.++.|.... ..+++.|+|++|.|| .+|.. +..
T Consensus 489 ~T~w~s~~~~~~~~~~~~~i~vDLg~~~~i~~v~~~~r~~~~--~~~~~~y~i~~S~Dg-~~w~~~v~~ 554 (601)
T 1w8o_A 489 STFWHTEWSRADAPGYPHRISLDLGGTHTISGLQYTRRQNSA--NEQVADYEIYTSLNG-TTWDGPVAS 554 (601)
T ss_dssp TCCEECCCSSTTCCCSCEEEEEEEEEEEEEEEEEEEECSSCS--TTCBCEEEEEEESSS-SSCEEEEEE
T ss_pred CCcEecCCCCCCCCCCCeEEEEECCCcEEEeEEEEecCCCCC--CCceEEEEEEEECCC-Cccceeeee
Confidence 34577653210 01378999999999999999999886422 459999999999999 99995 643
No 41
>3lei_A Platelet aggregation factor SM-HPAF; lectin domain of lectinolysin, fucose, blood clotting, nicke; HET: FUC; 1.90A {Streptococcus mitis} PDB: 3leg_A* 3le0_A* 3lek_A*
Probab=97.92 E-value=2.1e-05 Score=52.33 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=44.5
Q ss_pred CceeeeCCC--CCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEEC-CCCCCcEE
Q psy4861 19 GGAWCPKNQ--ITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWR-PKLGKWVR 81 (101)
Q Consensus 19 ~gAW~~~~~--~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~-dg~~~W~~ 81 (101)
..-|.+..- ...+..+||+|||+..+.|..|.++.|.+.. ..+.++.|.|..+. |+ ..|..
T Consensus 38 ~t~W~~~~ct~t~~~~~~W~~VDLg~~~~v~~V~i~~~~d~~-~~~r~~~~~I~vs~~dg-~~w~~ 101 (153)
T 3lei_A 38 DSDYGHHSVTHTNFEDNAWWQVDLGKTENVGKVKLYNRGDGN-VANRLSNFDVVLLNEAK-QEVAR 101 (153)
T ss_dssp CCCGGGTCSCCCCSBTTCEEEEEEEEEEEEEEEEEEECCSTT-CGGGSCSEEEEEECTTC-CEEEE
T ss_pred CCccccCccccCCCCCCCeEEEECCCceEEeEEEEEeCCCCc-ccccceeEEEEEECCCC-Ccccc
Confidence 456875210 0135689999999999999999998875421 13578899999885 67 78976
No 42
>4gwi_A Lectinolysin, platelet aggregation factor SM-HPAF; cholesterol-dependent cytolysins, lewis antigens, F-type LEC glycan binding; HET: BDZ; 1.60A {Streptococcus mitis} PDB: 4gwj_A* 3lei_A* 3leg_A* 3le0_A* 3lek_A*
Probab=97.37 E-value=0.00033 Score=46.86 Aligned_cols=49 Identities=14% Similarity=0.164 Sum_probs=39.1
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEE-CCCCCCcEE
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYW-RPKLGKWVR 81 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys-~dg~~~W~~ 81 (101)
+..+|++|||++.+.|..|...-|.+-. ..+.+..|.|..+ .|| ..|..
T Consensus 52 ~~~~W~~VDLg~~~~v~~V~i~nr~d~~-~~~r~~~~~I~v~s~dg-~~w~~ 101 (153)
T 4gwi_A 52 EDNAWWQVDLGKTENVGKVKLYNRGDGN-VANRLSNFDVVLLNEAK-QEVAR 101 (153)
T ss_dssp BTTCEEEEEEEEEEEEEEEEEEECCSTT-CGGGSCSEEEEEECTTS-CEEEE
T ss_pred CCCCEEEEECCCCEEEEEEEEEcccCCc-hhhcccceEEEEECCCC-Ceeee
Confidence 5689999999999999999998775321 0357889999765 577 88986
No 43
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=97.32 E-value=0.00018 Score=52.17 Aligned_cols=48 Identities=13% Similarity=0.021 Sum_probs=38.5
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC----CCCcEE
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK----LGKWVR 81 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg----~~~W~~ 81 (101)
+..+||||||++.+.|.+|..+-| +. ..++++.|.|+.|.+. +..|..
T Consensus 194 ~~~~W~~VDLg~~~~v~~V~i~~~-d~--~~~~~~~~~i~vs~s~~~~~~~n~~~ 245 (293)
T 3cqo_A 194 TMDPWWRMDLSQTHRVFSVKVTNR-DS--FEKRINGAEIRIGDSLDNNGNHNPRC 245 (293)
T ss_dssp EESCEEEEEEEEEEEEEEEEEECC-SS--SGGGGTTEEEEEESCCGGGGTTSCEE
T ss_pred CCCCEEEEECCCeEEEeEEEEEcc-Cc--cccccCCeEEEEeccCccccccCcee
Confidence 358999999999999999999998 42 2468999999997543 146764
No 44
>3hnm_A Putative chitobiase; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, BTR319D.BT_411; 3.00A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.0027 Score=43.28 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=48.5
Q ss_pred CceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCC--ccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQ--GAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 19 ~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~--~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
..-|-..-.......+||+|||+++..|++|...-|..... ..-.++.|.|..|.|+ .+|....+.
T Consensus 50 ~T~Wht~w~~~~~~P~~itIDLg~~~~v~~~~~~~r~~~~~~~~~g~ik~~~I~~S~Dg-~~W~~v~~~ 117 (172)
T 3hnm_A 50 GTQWLCRWDVKEPLPYYFVFDMGKEYTLFRFGFANPVAPAAHVWAGTSKAGYVEASIDN-ENWVKLKDW 117 (172)
T ss_dssp TSCEECCCSSCCCSCEEEEEEEEEEEEEEEEEEECCCSSCTTSTTCCEEEEEEEEESSS-SCEEEEECC
T ss_pred CCeEEecCCCCCCCCEEEEEECCCceEEeEEEEEecCCCCcccCCCCeEEEEEEEEeCC-CCeEEeEEE
Confidence 35576521101246799999999999999999999865320 1347999999999999 999986543
No 45
>2j1v_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; HET: NAG GAL FUC; 1.45A {Streptococcus pneumoniae} PDB: 2j1r_A* 2j1t_A* 2j1u_A* 2j1s_A*
Probab=97.17 E-value=0.00051 Score=45.72 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK 75 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg 75 (101)
+..+|+||||++.+.|..|...=|.+- ..+.+..|.|+.+.++
T Consensus 58 ~~~~W~~VDLg~~~~V~~V~i~~r~d~--~~~r~~~~~I~v~~~~ 100 (151)
T 2j1v_A 58 DNPSWWEVDLKKMDKVGLVKIYNRTDA--ETQRLSNFDVILYDNN 100 (151)
T ss_dssp CTTCEEEEEEEEEEEEEEEEEEECCSS--CGGGSCSEEEEEECTT
T ss_pred CCCCEEEEECCCCeEcCEEEEEcCCCc--cccccCCEEEEEECCC
Confidence 568999999999999999999876432 1367889999999886
No 46
>3cqo_A FBP32; F-lectin, fucolectin, sugar binding protein; HET: FUC; 2.32A {Morone saxatilis}
Probab=97.05 E-value=0.00057 Score=49.51 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK 75 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg 75 (101)
+..|||||||++.+.|..|.++.|.+.. .+.+..|.|..+.+.
T Consensus 48 ~~~~W~~VDLg~~~~v~~V~i~~r~d~~--~~~~~~~~i~v~~s~ 90 (293)
T 3cqo_A 48 QTNPWWRVDLLEPYIVTSITITNRGDCC--PERLNGVEIHIGNSL 90 (293)
T ss_dssp BSSCEEEEEEEEEEEEEEEEEECCSSSC--GGGGTTEEEEEESCC
T ss_pred CCCCEEEEECCCceEEEEEEEEeCCCCc--cccccCeEEEEecCC
Confidence 5689999999999999999999885432 356788888886653
No 47
>1k12_A Lectin; beta barrel, protein carbohydrate complex, sugar binding protein; HET: FUC; 1.90A {Anguilla anguilla} SCOP: b.18.1.15
Probab=97.02 E-value=0.00054 Score=45.73 Aligned_cols=43 Identities=19% Similarity=0.174 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK 75 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg 75 (101)
+..+|++|||++.+.|..|...=|.+. ..+....|.|..+.+.
T Consensus 56 ~~~~W~~VDLg~~~~V~~V~i~~r~d~--~~~r~~~~~i~v~~s~ 98 (158)
T 1k12_A 56 QANPWWRVDLLQVYTITSVTITNRGDC--CGERISGAEINIGQHL 98 (158)
T ss_dssp CSSCEEEEEEEEEEEEEEEEEEECSSS--CTTTTTTCEEEEESSC
T ss_pred CCCCEEEEECCCceEEeEEEEEeCCCc--CccccCCEEEEEEcCC
Confidence 678999999999999999999866432 1356788899988765
No 48
>2j22_A Fucolectin-related protein; carbohydrate-binding protein, carbohydrate binding protein; 1.8A {Streptococcus pneumoniae}
Probab=96.91 E-value=0.0019 Score=42.80 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred CCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEEC--CCCCCcE
Q psy4861 31 EPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWR--PKLGKWV 80 (101)
Q Consensus 31 d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~--dg~~~W~ 80 (101)
+..+|+||||++.+.|..|..-=|.+.. .+....|.|..+. ++ ..|.
T Consensus 55 ~~~~Ww~VDLg~~~~V~~V~i~~r~d~~--~~r~~~~~I~vg~s~d~-~~~~ 103 (148)
T 2j22_A 55 DSPSWWEIDLAQTEELEKLIIYNRTDAE--IQRLSNFDIIIYDSNDY-EVFT 103 (148)
T ss_dssp CTTCEEEEEEEEEEEEEEEEEEECCSSC--GGGSEEEEEEEECTTSC-EEEE
T ss_pred CCCCEEEEECCCCEEeeEEEEEecCCCc--ccccCCEEEEEEeCCCC-Cccc
Confidence 5689999999999999999997664321 3578899998854 44 5564
No 49
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=96.80 E-value=0.0047 Score=41.43 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=43.1
Q ss_pred CCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCC--CcEEE
Q psy4861 18 NGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLG--KWVRY 82 (101)
Q Consensus 18 ~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~--~W~~y 82 (101)
..-.||... ...|||.|||+++..|.+|..|-+ =|+.|.|+-|.++ . .|...
T Consensus 45 ~~T~W~t~g----~~Pq~i~Idf~k~~~is~~~i~~~--------~vk~~~ie~s~d~-~p~~w~~i 98 (153)
T 1tvg_A 45 PETFWTTTG----MFPQEFIICFHKHVRIERLVIQSY--------FVQTLKIEKSTSK-EPVDFEQW 98 (153)
T ss_dssp TTCCEECCS----CSSEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSS-SSCCCEEE
T ss_pred CCceEECCC----CCCcEEEEECCCceEEEEEEEEec--------CCEEEEEEEECCC-CCcceEEe
Confidence 346799853 357999999999999999999853 1899999999998 7 89875
No 50
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase, N-acetylglucosamine; 1.85A {Bacteroides thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB: 2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A* 2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A* 2wzi_A* 2j4g_A*
Probab=96.74 E-value=0.00043 Score=56.58 Aligned_cols=56 Identities=9% Similarity=0.036 Sum_probs=18.2
Q ss_pred ceeeeCCCCCCCCCCeEEEecCCcEEEEEEEec-CCcCCCCccceeeEEEEEEECCCCCCcEEE
Q psy4861 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQ-GRFGNGQGAEFTEAYLIDYWRPKLGKWVRY 82 (101)
Q Consensus 20 gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQ-Gr~~~~~~~~wVt~y~v~ys~dg~~~W~~y 82 (101)
.-|++.........+||+|||++++.|.+|..- |... .. .| |+|+||.|| .+|...
T Consensus 615 T~w~s~~~~~~~~g~wi~VdL~~~~~V~~I~i~~~~~~-~~--~~---~~ve~S~DG-k~W~~v 671 (716)
T 2cho_A 615 LISPANEVVKWAAGNSVEIELDAIYPGENIQINFGKDA-PC--TW---GRLEISTDA-KEWKTV 671 (716)
T ss_dssp EECC------------CEEEEEEEEEEEEEEECC------------------------------
T ss_pred eEEECCCCccCCCCCEEEEEcCCcEEEEEEEEecCCCC-CC--ce---EEEEEECCC-CCccCC
Confidence 458777421125679999999999999999654 5433 22 13 999999999 999775
No 51
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Probab=96.08 E-value=0.00097 Score=55.92 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred ceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCc----cceeeEEEEEEECCCCCCcEEEEcCCC
Q psy4861 20 GAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQG----AEFTEAYLIDYWRPKLGKWVRYKDAKG 87 (101)
Q Consensus 20 gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~----~~wVt~y~v~ys~dg~~~W~~y~~~~~ 87 (101)
.-||... ...||+|||++++.|......=....+.. ..-++.|+|+||.++ ..|.......+
T Consensus 835 tKWcs~~-----~~~wl~vDLg~~~tI~~~vv~hagaggE~~~~~~~NT~dF~Lq~s~d~-~~W~~vd~Vtg 900 (937)
T 3gdb_A 835 DKWSSAQ-----LSGSVDIRLTKSRTVVRWVMDHAGAGGESVNDGLMNTKDFDLYYKDAD-GEWKLAKEVRG 900 (937)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CccccCC-----CCceEEEECCCcEEEeEEEEEecccCccccccccccccceEEEEecCC-CCeEEeeEeeC
Confidence 3699873 45799999999999999887632111111 234778999999998 89997654443
No 52
>2yc2_A IFT25, intraflagellar transport protein 25; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_A
Probab=95.93 E-value=0.018 Score=37.62 Aligned_cols=54 Identities=4% Similarity=0.009 Sum_probs=42.7
Q ss_pred CCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCC-CCCcEEEE
Q psy4861 18 NGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPK-LGKWVRYK 83 (101)
Q Consensus 18 ~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg-~~~W~~y~ 83 (101)
..-.||... ...|||.|||+++..|++|..|-+ =++.|.|+-|.++ -.+|..+.
T Consensus 37 ~~T~W~s~g----~~pq~i~I~~~~~~~is~~~i~~~--------~~k~~~ie~s~~~~p~~w~~i~ 91 (139)
T 2yc2_A 37 DNTFWVTTG----MFPQEFVLRLESCIRVSKITTLSL--------NVRKLAVEKCDQDKPDQFEKVF 91 (139)
T ss_dssp TTCCEECCS----SSCEEEEEEEEEEEEEEEEEEEEE--------SEEEEEEEEECSSSCCCCEEEE
T ss_pred CCCEEeCCC----CCCeEEEEECCCceEEEEEEEEec--------CCcEEEEEEecCCCCCceEEEE
Confidence 357799863 347899999999999999999853 2889999999885 13898763
No 53
>2yfu_A Carbohydrate binding family 6; sugar binding protein; 1.65A {Clostridium thermocellum} PDB: 2y8j_A* 2y9i_A* 2y9s_A 2yb7_A* 2y8m_A 2yfz_A* 2yg0_A*
Probab=89.87 E-value=0.59 Score=31.21 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=34.4
Q ss_pred CCeEEEecCCcE--EEEEEEecCCcCCCCccceeeEEEEEEEC--CCCCCcEEE
Q psy4861 33 REWIEINLHFVH--VITATGVQGRFGNGQGAEFTEAYLIDYWR--PKLGKWVRY 82 (101)
Q Consensus 33 ~qwLQVDL~~~~--~It~V~TQGr~~~~~~~~wVt~y~v~ys~--dg~~~W~~y 82 (101)
..||+|||++.. .|+++.-.-|.+. ..-+..++++-|. |+ .+|...
T Consensus 44 ~~~i~iDLG~~~~~~l~~f~Y~Pr~~~---~~~miGg~fegSnd~Df-~~~~tL 93 (155)
T 2yfu_A 44 GCWLGLDFGEGVRNVITQIKFCPRSGY---EQRMIGGIFQGANKEDF-SDAVTL 93 (155)
T ss_dssp SCEEEEECCTTCCEEEEEEEEECCTTC---GGGGTTCEEEEESSTTC-TTCEEE
T ss_pred CceEEEECCCCcceEEeeEEEecCccc---ccCCcEEEEEEECCCCC-CCeEEE
Confidence 689999999987 8999988777542 2344578888888 55 678753
No 54
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=87.22 E-value=0.79 Score=35.46 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECCCCCCcEEEEcC
Q psy4861 32 PREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGKWVRYKDA 85 (101)
Q Consensus 32 ~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~dg~~~W~~y~~~ 85 (101)
...+|+|||+++..|-.|..|-....+ |-|++|.|+|-.+| .|....+.
T Consensus 354 ~~~~~~i~l~~~~~fn~v~l~E~I~~G---QRV~~f~ve~~~~g--~W~~v~~G 402 (443)
T 3gza_A 354 QKKSLTLKLGKEQSVNYCIIQENIKNG---ERIRQYQIEAKVNG--KWQTVCKG 402 (443)
T ss_dssp SSSEEEEEEEEEEEEEEEEEEECGGGC---CCEEEEEEEEEETT--EEEEEEEE
T ss_pred CCceEEEEcCCCceEeEEEEEecCCCC---CcccEEEEEEEeCC--eEEEEEee
Confidence 468999999999999999999976554 57999999998765 79877553
No 55
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=79.79 E-value=3.5 Score=31.84 Aligned_cols=45 Identities=20% Similarity=0.134 Sum_probs=33.4
Q ss_pred CCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECC-CCCCcEEEE
Q psy4861 32 PREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRP-KLGKWVRYK 83 (101)
Q Consensus 32 ~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~d-g~~~W~~y~ 83 (101)
.+--|++||++.+-|+-|+.|=... ... +..|+=|.| | .+|..|+
T Consensus 102 ~~v~itl~l~~~~~~~~v~~~f~s~--rP~----~~~ieks~d~g-~tw~p~q 147 (525)
T 4aqs_A 102 ENVTIQLDLEAEFHFTHLIMTFKTF--RPA----AMLIERSSDFG-KAWGVYR 147 (525)
T ss_dssp CCCEEEEEEEEEEEEEEEEEEESSC--CCS----EEEEEEESSTT-SSCEEEE
T ss_pred cCeEEEEcCCCeEEEEEEEEEEECC--CCC----eEEEEEecCCC-CCCccee
Confidence 4678999999999999999986422 223 344666888 6 8998875
No 56
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=62.13 E-value=18 Score=27.24 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=29.4
Q ss_pred CeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECC-CCCCcEEEE
Q psy4861 34 EWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRP-KLGKWVRYK 83 (101)
Q Consensus 34 qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~d-g~~~W~~y~ 83 (101)
-=|++||++..-|+-|+.+=..... . +..|+=|.| | .+|..|+
T Consensus 102 VtitLdL~~~f~~t~v~i~F~~~rP--~----~m~Iers~d~G-~tw~p~q 145 (375)
T 4aqt_A 102 INLTLHLGKAFDITYVRLKFHTSRP--E----SFAIYKRTRED-GPWIPYQ 145 (375)
T ss_dssp EEEEEEEEEEEEEEEEEEEESSSCC--S----EEEEEEESSSS-SCCEEEE
T ss_pred eEEEEcCCCeEEEEEEEEEecCCCC--C----cEEEEEecCCC-CCcccee
Confidence 3599999999999999998542211 2 333443555 6 8998874
No 57
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=60.32 E-value=11 Score=28.92 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=30.3
Q ss_pred CCeEEEecCCcEEEE-EEEecCCcCCCCccceeeEEEEEEECC-CCCCcEEEE
Q psy4861 33 REWIEINLHFVHVIT-ATGVQGRFGNGQGAEFTEAYLIDYWRP-KLGKWVRYK 83 (101)
Q Consensus 33 ~qwLQVDL~~~~~It-~V~TQGr~~~~~~~~wVt~y~v~ys~d-g~~~W~~y~ 83 (101)
+-=|++||++..-|| -|+.+-.... .. +..|+=|.| | .+|..|+
T Consensus 131 ~V~itLdL~~~f~~t~~i~l~F~spR--P~----am~ierS~D~G-~tW~p~q 176 (426)
T 3zyj_B 131 QVNITLSWSKTIELTDNIVITFESGR--PD----QMILEKSLDYG-RTWQPYQ 176 (426)
T ss_dssp CEEEEEEEEEEEEECSCEEEEESSCC--CS----EEEEEEESSTT-SSCEEEE
T ss_pred ceeEEEcCCCcEEEEEEEEeecCCCC--CC----eEEEEeccCCC-CCceehH
Confidence 457889999999998 4666654222 12 344666788 7 8998874
No 58
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=57.35 E-value=22 Score=27.09 Aligned_cols=45 Identities=4% Similarity=0.036 Sum_probs=31.1
Q ss_pred CCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEEEECC-CCCCcEEEE
Q psy4861 33 REWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRP-KLGKWVRYK 83 (101)
Q Consensus 33 ~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ys~d-g~~~W~~y~ 83 (101)
.-=|++||++..-|+-|+.+=..+ .... +..|+=|.| | .+|..|+
T Consensus 107 ~V~itLdL~~~f~~t~v~l~F~~s-pRP~----~m~ierS~D~G-~tW~p~q 152 (403)
T 2y38_A 107 EVNVTLDLGQVFHVAYVLIKFANS-PRPD----LWVLERSTDFG-HTYQPWQ 152 (403)
T ss_dssp CCEEEEEEEEEEEEEEEEEEECSS-CCCS----EEEEEEESSSS-SSEEEEE
T ss_pred cceeEEeCCCcEEEEEEEEEecCC-CCCC----eEEEEeccCCC-CCcccee
Confidence 567999999999999998875311 1112 344555888 6 8888775
No 59
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=54.75 E-value=17 Score=27.15 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=29.3
Q ss_pred eEEEecCCcEEEE-EEEecCCcCCCCccceeeEEEEEEECC-CCCCcEEEE
Q psy4861 35 WIEINLHFVHVIT-ATGVQGRFGNGQGAEFTEAYLIDYWRP-KLGKWVRYK 83 (101)
Q Consensus 35 wLQVDL~~~~~It-~V~TQGr~~~~~~~~wVt~y~v~ys~d-g~~~W~~y~ 83 (101)
=|++||++..-|+ -|+.+-.... .. +..|+=|.| | .+|..|+
T Consensus 105 nlTL~L~k~felt~~iil~F~spR--P~----sm~ierS~D~G-~tW~P~Q 148 (338)
T 3tbd_A 105 NITLSWNKTVELTDDVVMTFEYGR--PT----VMVLEKSLDNG-RTWQPYQ 148 (338)
T ss_dssp EEEEEEEEEEEECSCEEEEESSCC--CS----EEEEEEESSTT-SSCEEEE
T ss_pred eEEEcCCCeEEEEEEEEeecCCCC--CC----eEEEEeccCCC-CCceeeh
Confidence 4899999999888 5666664322 12 445676888 6 8998874
No 60
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex, structural protein; 2.22A {Homo sapiens} PDB: 3unp_A 4dxr_A* 4dxs_A* 4fi9_A
Probab=42.27 E-value=27 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=26.1
Q ss_pred CCceeeeCCCCCCCCCCeEEEecCCcEEEEEEEecC
Q psy4861 18 NGGAWCPKNQITTEPREWIEINLHFVHVITATGVQG 53 (101)
Q Consensus 18 ~~gAW~~~~~~~~d~~qwLQVDL~~~~~It~V~TQG 53 (101)
-+.+||.+. ...+|-|.|.+...+++|..+=
T Consensus 79 pG~CW~f~g-----~~g~l~I~Ls~~I~~~~VtieH 109 (198)
T 4dxt_A 79 PGNCWAFQG-----PQGFAVVRLSARIRPTAVTLEH 109 (198)
T ss_dssp TTCSEEEET-----TCEEEEEEEEEEEEEEEEEEEC
T ss_pred CcceeecCC-----CcceeeeecCCeEEEEEEEEEc
Confidence 467899883 4679999999999999998875
No 61
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=27.92 E-value=13 Score=33.01 Aligned_cols=37 Identities=11% Similarity=-0.142 Sum_probs=0.0
Q ss_pred CCCeEEEecCCcEEEEEEEecCCcCCCCccceeeEEEEE
Q psy4861 32 PREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLID 70 (101)
Q Consensus 32 ~~qwLQVDL~~~~~It~V~TQGr~~~~~~~~wVt~y~v~ 70 (101)
..+||+|||++++.|+++.-.=|.+.. +-.|+.|+|.
T Consensus 1493 ~Ph~ItIDLge~~tVsGf~YLPRQdg~--NG~Ik~YeI~ 1529 (1531)
T 3ecq_A 1493 VGKPATMVLKEATEITGLRYVPRGSGS--NGNLRDVKLV 1529 (1531)
T ss_dssp ---------------------------------------
T ss_pred CCeEEEEECCCceEEccEEEecCCCCC--CCcEEEEEEE
Confidence 457999999999999999888887532 3578888875
No 62
>3o12_A Uncharacterized protein YJL217W; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.50A {Saccharomyces cerevisiae}
Probab=26.52 E-value=46 Score=22.84 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.3
Q ss_pred EEEEEEECCCCCCcEEEEc
Q psy4861 66 AYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 66 ~y~v~ys~dg~~~W~~y~~ 84 (101)
.|.++||.|| ..|.....
T Consensus 158 ~~~f~YS~DG-~~W~~lr~ 175 (221)
T 3o12_A 158 VLRIQVSSDK-KTWPLVRL 175 (221)
T ss_dssp EEEEEEESSS-SCCCEEEE
T ss_pred EEEEEEECCC-CCCEECcc
Confidence 6889999999 99987754
No 63
>3mep_A Uncharacterized protein ECA2234; all beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Pectobacterium atrosepticum}
Probab=24.50 E-value=54 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.205 Sum_probs=14.8
Q ss_pred EEEEEEECCCCCCcEEEEc
Q psy4861 66 AYLIDYWRPKLGKWVRYKD 84 (101)
Q Consensus 66 ~y~v~ys~dg~~~W~~y~~ 84 (101)
.|.+.||.|| ..|.....
T Consensus 129 ~~~~~yS~DG-~~w~~l~~ 146 (198)
T 3mep_A 129 VIRIQYSIDG-KNWPLLRL 146 (198)
T ss_dssp EEEEEEESSS-SCCCEEEE
T ss_pred EEEEEEECCC-CEEEECce
Confidence 6788999999 99987654
Done!