RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4861
(101 letters)
>gnl|CDD|238014 cd00057, FA58C, Coagulation factor 5/8 C-terminal domain, discoidin
domain; Cell surface-attached carbohydrate-binding
domain, present in eukaryotes and assumed to have
horizontally transferred to eubacterial genomes.
Length = 143
Score = 36.6 bits (85), Expect = 5e-04
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 19 GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLGK 78
AW P +P +W++++L +T QGR G +E+ +Y + Y
Sbjct: 34 DNAWTPAVN---DPPQWLQVDLGKTRRVTGIQTQGRK-GGGSSEWVTSYKVQY-SLDGET 88
Query: 79 WVRYKDAKGNEMYSY 93
W YKD ++++
Sbjct: 89 WTTYKDKGEEKVFTG 103
>gnl|CDD|214572 smart00231, FA58C, Coagulation factor 5/8 C-terminal domain,
discoidin domain. Cell surface-attached
carbohydrate-binding domain, present in eukaryotes and
assumed to have horizontally transferred to eubacterial
genomes.
Length = 139
Score = 31.3 bits (71), Expect = 0.033
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 14 RTDYN-GGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDY- 71
R + G WCP + WI+++L + +T R GNG + Y D
Sbjct: 27 RLNGGSDGGWCPAK---NDLPPWIQVDLGRLRTVTGVITGRRHGNGDWVTYKLEYSDDGV 83
Query: 72 -WRPKLGKWVR 81
W +
Sbjct: 84 NWTTYKDGNSK 94
>gnl|CDD|216100 pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also
known as the discoidin (DS) domain family.
Length = 128
Score = 30.2 bits (68), Expect = 0.082
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 14 RTDYNGG-AWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYW 72
D NG AW K + +W++++L IT QGR G + ++Y I+Y
Sbjct: 19 AIDGNGSTAWSSKWG---DAPQWLQVDLGKPKKITGVVTQGR--QDGGNGYVKSYKIEYS 73
Query: 73 RPKLGKWVRYKDA-KGNEMYSYVQTGTL 99
W KD GN S
Sbjct: 74 NDGE-NWTEVKDGFYGNTDNSGPVKNLF 100
>gnl|CDD|225755 COG3214, COG3214, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 400
Score = 27.4 bits (61), Expect = 1.1
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 62 EFTEAYLIDYWR---PKLGKWVRYKDAKGNEMYSYVQTGTLWR 101
TE L DY+R P W +G E+ V+ G R
Sbjct: 221 VATEGDLADYYRLKRPDARDWRAALAEEGQEISVAVEGGWDHR 263
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol
Phosphatase domain of Thermotoga like. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. Thermotoga
PHP is an uncharacterized protein. HisPPase catalyzes
the eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
give histidinol. The HisPPase can be classified into
two types: the bifunctional HisPPase found in
proteobacteria that belongs to the DDDD superfamily and
the monofunctional Bacillus subtilis type that is a
member of the PHP family. The PHP domain has four
conserved sequence motifs and contains an invariant
histidine that is involved in metal ion coordination.
The PHP domain of HisPPase is structurally homologous
to other members of the PHP family that have a
distorted (beta/alpha)7 barrel fold with a trinuclear
metal site on the C-terminal side of the barrel.
Length = 226
Score = 25.8 bits (57), Expect = 3.7
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 44 HVITATGVQGRFGNGQGAEFTEAYLIDY----WRPKLGKWVRY 82
HV+ + G+F G TEA DY W +Y
Sbjct: 39 HVVDRASLIGKFPQGTHPGVTEANFEDYMEALKVEAKRAWEKY 81
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 25.6 bits (56), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 11 DMVRTDYNGGAWCPKNQITTEPREWIEINLHF 42
VR YNGGA CP+ + RE+I+ F
Sbjct: 264 QSVRWFYNGGAPCPEELM----REFIDRGFLF 291
>gnl|CDD|216402 pfam01268, FTHFS, Formate--tetrahydrofolate ligase.
Length = 557
Score = 25.5 bits (57), Expect = 6.6
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 5/20 (25%)
Query: 32 PREWIEINLHF---VHVITA 48
P E +INLHF +H ITA
Sbjct: 118 PME--DINLHFTGDIHAITA 135
>gnl|CDD|193499 cd03877, M28_like_PA, M28 Zn-Peptidases containing a PA domain
insert. Peptidase family M28 (also called
aminopeptidase Y family), uncharacterized subfamily.
The M28 family contains aminopeptidases as well as
carboxypeptidases. They have co-catalytic zinc ions;
each zinc ion is tetrahedrally co-ordinated, with three
amino acid ligands plus activated water; one aspartate
residue binds both metal ions. This subfamily is
composed of uncharacterized proteins, many of which
contain a protease-associated (PA) domain insert which
may participate in substrate binding and/or promote
conformational changes, influencing the stability and
accessibility of the site to substrate. Some proteins
in this subfamily are also associated with the PDZ
domain, a widespread protein module that has been
recruited to serve multiple functions during the course
of evolution.
Length = 254
Score = 24.9 bits (55), Expect = 8.1
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 43 VHVITATGVQGRFGNGQGAEFTEAYLIDYWRPKLG 77
+ + + ++GR +G E Y+ + ++ K G
Sbjct: 1 IEFLASDELEGRLTGSEGNEKAAEYIANEFK-KAG 34
>gnl|CDD|193538 cd05662, M28_like_2, M28 Zn-Peptidases. Peptidase family M28
(also called aminopeptidase Y family), uncharacterized
subfamily. The M28 family contains aminopeptidases as
well as carboxypeptidases. They have co-catalytic zinc
ions; each zinc ion is tetrahedrally co-ordinated, with
three amino acid ligands plus activated water; one
aspartate residue binds both metal ions. This subfamily
is composed of uncharacterized proteins that do not
contain a protease-associated (PA) domain.
Length = 267
Score = 24.9 bits (55), Expect = 9.3
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 40 LHFVHVITATGVQGRFGNGQGAEFTEAYLID 70
L + ++++ ++GR +GA AY+I+
Sbjct: 3 LQDLKILSSDSLEGRKTGTEGAALARAYIIE 33
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein
[General function prediction only].
Length = 1621
Score = 25.1 bits (55), Expect = 9.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 60 GAEFTEAYLIDYWRPKLGKWVR 81
G + YL+D + V
Sbjct: 148 GLTLGKPYLLDNYTGDSPPSVG 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.456
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,241,867
Number of extensions: 420735
Number of successful extensions: 380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 17
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)