RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4861
         (101 letters)



>d2qqia2 b.18.1.2 (A:273-427) B1 domain of neuropilin-1 {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 155

 Score = 33.7 bits (76), Expect = 0.001
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 14  RTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWR 73
           R +Y    W P        REWI+++L  +  +TA G QG        ++          
Sbjct: 35  RLNYPENGWTP---GEDSYREWIQVDLGLLRFVTAVGTQGAISKETKKKYYVKTYKIDVS 91

Query: 74  PKLGKWVRYKDAKGNEMY 91
                W+  K+     ++
Sbjct: 92  SNGEDWITIKEGNKPVLF 109


>d2qqia1 b.18.1.2 (A:431-586) C2 domain of factor VIII {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 156

 Score = 24.1 bits (51), Expect = 3.4
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 2/83 (2%)

Query: 14  RTDYNGGAWCPKNQITTEPREWIEINLHFVHVITATGVQGRFGNGQGAEFTEAYLIDYWR 73
           R   +   W       +   EW++I+L    ++    +QG   + +   F   + I Y  
Sbjct: 33  RLVTSRSGWALPPAPHSYINEWLQIDLGEEKIVRGIIIQGG-KHRENKVFMRKFKIGYSN 91

Query: 74  PKLGKWVRYKDAKGNEMYSYVQT 96
                W    D    +  S+   
Sbjct: 92  NG-SDWKMIMDDSKRKAKSFEGN 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 430,383
Number of extensions: 17561
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 8
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.6 bits)