BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4862
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 OS=Caenorhabditis
elegans GN=dis-3 PE=3 SV=2
Length = 961
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF++PGT +D+EAALR TTVYL D+RIDM+P LLS NLCSLR
Sbjct: 513 EVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLR 564
>sp|Q9CSH3|RRP44_MOUSE Exosome complex exonuclease RRP44 OS=Mus musculus GN=Dis3 PE=2 SV=4
Length = 958
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLR 552
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 OS=Homo sapiens GN=DIS3 PE=1 SV=2
Length = 958
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSL+
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLK 552
>sp|P37202|DIS3_SCHPO Exosome complex exonuclease dis3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dis3 PE=1 SV=1
Length = 970
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF+KP T +D EAA R TTVYLVDKRIDM+P LL +LCSLR
Sbjct: 530 EVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLR 581
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease DIS3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DIS3 PE=1 SV=1
Length = 1001
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 46/60 (76%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
KK EVGVHIADV+HF+KPGT LD E A R T+VYLVDKRIDM+P LL +LCSL+
Sbjct: 557 KKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLK 616
>sp|O14040|DIS3L_SCHPO Dis3-like exonuclease C2C4.07c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC2C4.07c PE=3 SV=1
Length = 927
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 41/51 (80%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADV+HF+KP + LD+EAA RATTVYLV K I M+P LL LCSL
Sbjct: 475 EVGVHIADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSL 525
>sp|Q8C0S1|DI3L1_MOUSE DIS3-like exonuclease 1 OS=Mus musculus GN=Dis3l PE=2 SV=2
Length = 1053
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSL 550
>sp|Q02146|RNR2_LACLA Ribonuclease R 2 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr2 PE=3 SV=3
Length = 665
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 43/60 (71%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
KK S E+GVHIADVSH++ G+ LDEEA RAT+VY+ D+ + M+P LS NLCSL
Sbjct: 228 KKLSNWHFELGVHIADVSHYVTEGSSLDEEAYSRATSVYVTDRVVPMLPVKLSNNLCSLN 287
>sp|Q5R5N8|DI3L1_PONAB DIS3-like exonuclease 1 OS=Pongo abelii GN=DIS3L PE=2 SV=1
Length = 1054
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSL 550
>sp|Q8TF46|DI3L1_HUMAN DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2
Length = 1054
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSL 550
>sp|Q5U2P0|DI3L1_RAT DIS3-like exonuclease 1 OS=Rattus norvegicus GN=Dis3l PE=2 SV=2
Length = 1054
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSL 550
>sp|A2RV18|DI3L1_DANRE DIS3-like exonuclease 1 OS=Danio rerio GN=dis3l PE=2 SV=1
Length = 1057
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 27 KKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
K+ E+GVHIADV+HF++ G+ D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 492 KRLELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDMLPAVLSADLCSL 545
>sp|Q0P4R5|DI3L1_XENTR DIS3-like exonuclease 1 OS=Xenopus tropicalis GN=dis3l PE=2 SV=2
Length = 1039
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P T D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 493 ELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLILSADLCSL 543
>sp|A0JN80|DI3L1_BOVIN DIS3-like exonuclease 1 OS=Bos taurus GN=DIS3L PE=2 SV=2
Length = 1053
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 500 ELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSL 550
>sp|O32231|RNR_BACSU Ribonuclease R OS=Bacillus subtilis (strain 168) GN=rnr PE=3 SV=1
Length = 779
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+GVHIADVSH++ +P+D+EA R T+VYLVD+ I M+P LS +CSL
Sbjct: 283 LGVHIADVSHYVTENSPIDKEALERGTSVYLVDRVIPMIPHRLSNGICSL 332
>sp|Q9WZI1|RNR_THEMA Ribonuclease R OS=Thermotoga maritima (strain ATCC 43589 / MSB8 /
DSM 3109 / JCM 10099) GN=rnr PE=3 SV=1
Length = 710
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+GVHIADVSH++K G+ LD+EA R T+VYL+D I M+P LS +CSL
Sbjct: 281 LGVHIADVSHYVKEGSALDQEAFKRGTSVYLIDTVIPMLPFRLSNGICSL 330
>sp|Q8CI75|DI3L2_MOUSE DIS3-like exonuclease 2 OS=Mus musculus GN=Dis3l2 PE=1 SV=1
Length = 870
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 403 EVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 453
>sp|Q9PK00|RNR_CHLMU Ribonuclease R OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rnr
PE=3 SV=1
Length = 692
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+GVHIADVSH++ P + LD+EAA R ++Y K I M+P LS NLCSL+
Sbjct: 239 LGVHIADVSHYVTPNSALDQEAAKRCNSIYFPGKVIPMLPSALSDNLCSLK 289
>sp|O84402|RNR_CHLTR Ribonuclease R OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=rnr
PE=3 SV=1
Length = 694
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+GVHIADVSH++ P + LD EAA R ++Y K I M+P LS NLCSL+
Sbjct: 239 LGVHIADVSHYVTPNSALDREAAKRCNSIYFPGKVIPMLPSALSDNLCSLK 289
>sp|Q0V9R3|DI3L2_XENTR DIS3-like exonuclease 2 OS=Xenopus tropicalis GN=dis3l2 PE=2 SV=1
Length = 834
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVS+F+ G+ LD A+ RAT+VYLV K I M+P LL LCSL
Sbjct: 376 EVGVHIADVSYFVAEGSALDIMASERATSVYLVQKVIPMLPRLLCEELCSLN 427
>sp|Q9CH00|RNR1_LACLA Ribonuclease R 1 OS=Lactococcus lactis subsp. lactis (strain
IL1403) GN=rnr1 PE=3 SV=1
Length = 817
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADVSH++ +PLD+EA R T+VY+ D+ + M+P LS +CSL
Sbjct: 293 ELGVHIADVSHYVTENSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSL 343
>sp|Q6GN11|DI3L1_XENLA DIS3-like exonuclease 1 OS=Xenopus laevis GN=dis3l PE=2 SV=2
Length = 1040
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF++ T D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 494 ELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLILSADLCSL 544
>sp|Q8IYB7|DI3L2_HUMAN DIS3-like exonuclease 2 OS=Homo sapiens GN=DIS3L2 PE=1 SV=4
Length = 885
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
VGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 406 VGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 455
>sp|Q9Z848|RNR_CHLPN Ribonuclease R OS=Chlamydia pneumoniae GN=rnr PE=3 SV=1
Length = 676
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+GVHIADVSH++ P + LD+EAA R + Y K I M+P LS NLCSL+
Sbjct: 242 LGVHIADVSHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLK 292
>sp|P21499|RNR_ECOLI Ribonuclease R OS=Escherichia coli (strain K12) GN=rnr PE=1 SV=2
Length = 813
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 26 KKKG---EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
KK+G + V IADVS++++P TPLD EA R T+VY + I M+P +LS LCSL
Sbjct: 287 KKRGGGWRLWVAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344
>sp|P30851|RNR_SHIFL Ribonuclease R OS=Shigella flexneri GN=rnr PE=3 SV=4
Length = 813
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 26 KKKG---EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
KK+G + V IADVS++++P TPLD EA R T+VY + I M+P +LS LCSL
Sbjct: 287 KKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344
>sp|Q09568|YR86_CAEEL Uncharacterized ribonuclease F48E8.6 OS=Caenorhabditis elegans
GN=F48E8.6 PE=3 SV=2
Length = 848
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+ F+K GT LD+ A+ R + YL I M+P +L LCSL
Sbjct: 373 EIGVHIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSL 423
>sp|Q9PR88|RNR_UREPA Ribonuclease R OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=rnr PE=3 SV=1
Length = 721
Score = 55.5 bits (132), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
KK + ++ +G+ IADVS +++P T LD +A R T+ YLVD+ I M+P +S N+CSL
Sbjct: 275 KKLNDQRYFLGISIADVSFYVQPNTILDADAFKRGTSTYLVDRVIPMLPHNISNNICSL 333
>sp|O67834|RNR_AQUAE Ribonuclease R OS=Aquifex aeolicus (strain VF5) GN=rnr PE=3 SV=1
Length = 705
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
VHIADVS++++ GT D+EA R T Y D+ + M+P LS LCSLR
Sbjct: 277 VHIADVSYYVREGTETDKEAYKRGFTYYFPDRALHMLPEKLSAKLCSLR 325
>sp|Q9KNY1|RNR_VIBCH Ribonuclease R OS=Vibrio cholerae serotype O1 (strain ATCC 39315 /
El Tor Inaba N16961) GN=rnr PE=3 SV=1
Length = 821
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+ V IADVS++++P T LD+EA R +VY + + M+P +LS LCSL
Sbjct: 302 LWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSL 351
>sp|P40611|RNR_VIBPA Ribonuclease R OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=rnr PE=3 SV=2
Length = 835
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+KK + V IADVS++++P + LD+EA R +VY + + M+P +LS LCSL
Sbjct: 293 EKKKDGGWRLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSL 351
>sp|P57628|RNR_BUCAI Ribonuclease R OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=rnr PE=3 SV=2
Length = 731
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 20 KRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCS 79
KRK ++ + V IADVS +++P TPLD+ A R T+VY I M+P +S +LCS
Sbjct: 286 KRKANPEEGWILWVAIADVSCYVQPNTPLDKAALERGTSVYFPSLVIPMLPEKISTDLCS 345
Query: 80 LR 81
L+
Sbjct: 346 LK 347
>sp|Q98QL0|RNR_MYCPU Ribonuclease R OS=Mycoplasma pulmonis (strain UAB CTIP) GN=rnr PE=3
SV=1
Length = 725
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 23 KKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+K+K + VHIADV+H++K + +D+EA RAT++YL I M+P LS +CSL
Sbjct: 262 EKNKDHFLLSVHIADVAHYVKENSAIDKEALRRATSIYLPHMVIPMLPEKLSNGICSL 319
>sp|A0KFR1|RNB_AERHH Exoribonuclease 2 OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=rnb PE=3 SV=1
Length = 673
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 23 KKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+K E+ V IAD + ++ G+ LD+EAA RA TVY+ + + M+P LS LCSL+
Sbjct: 217 RKLDNGWELLVAIADPTAYVAEGSELDKEAAQRAFTVYMPGRNVPMIPRTLSDELCSLK 275
>sp|Q8K917|RNR_BUCAP Ribonuclease R OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=rnr PE=3 SV=1
Length = 726
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 7 EEERKGSEEPETKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRI 66
EE+ + ++ K+K +K ++ V I+DVS++I+P T LD+ A+ R T++Y I
Sbjct: 275 EEDARDFDDAIFCKKKTNGEKGWKLWVAISDVSYYIQPDTALDKAASKRGTSIYFPSLVI 334
Query: 67 DMVPGLLSGNLCSL 80
M+P +S ++CSL
Sbjct: 335 PMLPEKISIDVCSL 348
>sp|P44907|RNR_HAEIN Ribonuclease R OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=rnr PE=3 SV=1
Length = 782
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 24 KSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
K K ++ V IADVS++++ + LD EA R +VY ++ + M+P +LS LCSL
Sbjct: 295 KHGKGWKLWVAIADVSYYVRLRSTLDVEAHNRGNSVYFPNRVVPMLPEILSNGLCSL 351
>sp|P54084|RNR_THIFE Ribonuclease R (Fragment) OS=Thiobacillus ferrooxidans GN=rnr PE=3
SV=2
Length = 439
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADV+ ++ P + LD EA R +VY + I M+P +LS LCSL
Sbjct: 307 VAIADVATYVCPDSALDREAVTRGNSVYFPRRVIPMLPEILSNGLCSL 354
>sp|A8GF49|RNB_SERP5 Exoribonuclease 2 OS=Serratia proteamaculans (strain 568) GN=rnb
PE=3 SV=1
Length = 644
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ + IAD + +++ G+PLDE A RA T YL I M+P LS NLCSLR
Sbjct: 223 QLTIAIADPTAYVEQGSPLDEIARKRAFTNYLPGFNIPMLPRDLSDNLCSLR 274
>sp|O74454|STS5_SCHPO Protein sts5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sts5 PE=1 SV=1
Length = 1066
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
VG+H+ DVS I+PG+PLD E R+ V L K + + P L G SLR
Sbjct: 643 VGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLFPTTL-GEALSLR 692
>sp|B4EW02|RNB_PROMH Exoribonuclease 2 OS=Proteus mirabilis (strain HI4320) GN=rnb PE=3
SV=1
Length = 647
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+K+ + + + IAD + +I+P + LD AA RA T YL I M+P LS NLCSLR
Sbjct: 218 RKEENGQLSLYIAIADPTAYIQPNSELDTIAAQRALTNYLPGFNIPMLPRELSDNLCSLR 277
>sp|B7VSB8|RNB_VIBSL Exoribonuclease 2 OS=Vibrio splendidus (strain LGP32) GN=rnb PE=3
SV=1
Length = 668
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 22 KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
KKK E+ + IAD + +I P +D+ A R T+YL + I M+P L+ NLCSL
Sbjct: 219 KKKENGDFELTIAIADPTAYISPDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSL 277
>sp|D0Z8E6|RNB_EDWTE Exoribonuclease 2 OS=Edwardsiella tarda (strain EIB202) GN=rnb PE=3
SV=2
Length = 647
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
+ IAD + ++ +PLD EA RA T YL I M+P LS +LCSLR
Sbjct: 228 IAIADPTAYVSADSPLDAEARHRAFTTYLPGFNIPMLPRDLSDDLCSLR 276
>sp|Q9ZJX9|RNR_HELPJ Ribonuclease R OS=Helicobacter pylori (strain J99) GN=rnr PE=3 SV=1
Length = 644
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 26 KKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
K+K + V +ADVS F+ + LD+EA +R +VY + M+P LS CSL+
Sbjct: 238 KEKNTLFVAVADVSEFVPKHSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLK 293
>sp|Q2NST6|RNB_SODGM Exoribonuclease 2 OS=Sodalis glossinidius (strain morsitans) GN=rnb
PE=3 SV=1
Length = 644
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
V IAD + ++ G+PLD A RA T YL I M+P LS +LCSLR
Sbjct: 227 VAIADPTAWVPAGSPLDNIARERAFTNYLPGFNIPMLPRALSDDLCSLR 275
>sp|C0Q3R1|RNB_SALPC Exoribonuclease 2 OS=Salmonella paratyphi C (strain RKS4594) GN=rnb
PE=3 SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
>sp|Q57NV9|RNB_SALCH Exoribonuclease 2 OS=Salmonella choleraesuis (strain SC-B67) GN=rnb
PE=3 SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
>sp|B4TX11|RNB_SALSV Exoribonuclease 2 OS=Salmonella schwarzengrund (strain CVM19633)
GN=rnb PE=3 SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
>sp|B5R490|RNB_SALEP Exoribonuclease 2 OS=Salmonella enteritidis PT4 (strain P125109)
GN=rnb PE=3 SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
>sp|A9MQ20|RNB_SALAR Exoribonuclease 2 OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=rnb PE=3 SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
>sp|B5F571|RNB_SALA4 Exoribonuclease 2 OS=Salmonella agona (strain SL483) GN=rnb PE=3
SV=1
Length = 644
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
++ V IAD + +I G+ LD A +RA T YL I M+P LS +LCSLR
Sbjct: 223 QLTVAIADPTAWIAEGSKLDNAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.130 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,231,904
Number of Sequences: 539616
Number of extensions: 1273209
Number of successful extensions: 14722
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 12856
Number of HSP's gapped (non-prelim): 1674
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)