Query psy4862
Match_columns 81
No_of_seqs 121 out of 1020
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 19:34:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0557 VacB Exoribonuclease R 99.9 2.2E-28 4.8E-33 196.2 7.2 77 5-81 247-333 (706)
2 PRK05054 exoribonuclease II; P 99.9 2.4E-28 5.3E-33 194.8 7.1 74 8-81 195-275 (644)
3 TIGR02062 RNase_B exoribonucle 99.9 3.9E-28 8.4E-33 193.6 7.2 74 8-81 191-271 (639)
4 TIGR00358 3_prime_RNase VacB a 99.9 3.4E-28 7.3E-33 194.0 6.7 74 8-81 199-279 (654)
5 TIGR02063 RNase_R ribonuclease 99.9 4.8E-28 1.1E-32 193.9 6.9 74 8-81 251-331 (709)
6 PF00773 RNB: RNB domain CAUTI 99.9 6.7E-28 1.5E-32 176.4 5.6 75 7-81 5-86 (325)
7 PRK11642 exoribonuclease R; Pr 99.9 1.1E-27 2.4E-32 195.1 7.1 74 8-81 265-345 (813)
8 KOG2102|consensus 99.9 3.5E-23 7.6E-28 170.9 4.6 74 8-81 478-558 (941)
9 COG4776 Rnb Exoribonuclease II 99.8 1.1E-19 2.3E-24 142.4 4.3 77 5-81 189-275 (645)
10 PF02884 Lyase_8_C: Polysaccha 66.1 5.4 0.00012 23.4 1.9 28 12-41 36-63 (71)
11 cd01247 PH_GPBP Goodpasture an 62.3 23 0.00049 21.6 4.3 43 9-51 39-82 (91)
12 PF05800 GvpO: Gas vesicle syn 55.7 13 0.00028 24.0 2.4 28 19-46 42-69 (100)
13 PF15532 Toxin_53: Putative to 49.6 23 0.0005 23.0 2.9 13 28-40 35-47 (102)
14 PF14035 YlzJ: YlzJ-like prote 42.7 36 0.00079 20.0 2.8 26 19-44 31-57 (66)
15 PF07676 PD40: WD40-like Beta 40.4 49 0.0011 16.3 3.1 28 6-33 10-39 (39)
16 KOG2585|consensus 37.4 33 0.00072 27.6 2.7 57 9-67 370-427 (453)
17 PF02951 GSH-S_N: Prokaryotic 35.7 41 0.0009 21.9 2.5 28 35-62 6-37 (119)
18 PF11112 PyocinActivator: Pyoc 33.3 6.6 0.00014 24.0 -1.5 14 31-44 57-70 (76)
19 KOG3084|consensus 27.7 51 0.0011 25.6 2.1 40 36-75 216-264 (345)
20 cd02413 40S_S3_KH K homology R 25.6 1.6E+02 0.0035 17.7 4.4 34 19-53 23-57 (81)
21 COG2421 Predicted acetamidase/ 25.0 28 0.0006 26.6 0.3 21 43-63 156-176 (305)
22 PRK13720 modulator of post-seg 24.9 40 0.00087 20.3 0.9 16 29-44 37-52 (70)
23 PF15580 Imm33: Immunity prote 23.7 91 0.002 19.6 2.5 20 18-37 21-40 (90)
24 PF13684 Dak1_2: Dihydroxyacet 23.5 52 0.0011 24.6 1.5 21 24-44 38-58 (313)
25 COG4072 Uncharacterized protei 23.5 17 0.00036 25.2 -1.0 32 29-61 101-132 (161)
26 PRK15463 cold shock-like prote 23.4 54 0.0012 19.3 1.3 18 24-41 23-40 (70)
27 cd01265 PH_PARIS-1 PARIS-1 ple 23.3 1.8E+02 0.0039 17.5 4.2 44 6-49 38-82 (95)
28 PRK00468 hypothetical protein; 23.3 1.8E+02 0.0039 17.4 3.9 39 13-51 13-54 (75)
29 TIGR03599 YloV DAK2 domain fus 23.1 50 0.0011 26.7 1.5 21 25-45 258-278 (530)
30 PF07495 Y_Y_Y: Y_Y_Y domain; 23.0 60 0.0013 17.8 1.4 26 18-43 30-55 (66)
31 PF13115 YtkA: YtkA-like 20.9 51 0.0011 19.2 0.9 10 25-34 77-86 (86)
32 PF01476 LysM: LysM domain; I 20.6 90 0.002 15.6 1.7 19 41-59 2-20 (44)
33 PF12628 Inhibitor_I71: Falsta 20.4 52 0.0011 23.1 0.9 41 11-65 39-85 (173)
34 KOG2096|consensus 20.2 92 0.002 24.6 2.3 38 11-51 285-322 (420)
35 PF14468 DUF4427: Protein of u 20.1 69 0.0015 21.7 1.4 25 25-57 34-58 (132)
No 1
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=99.95 E-value=2.2e-28 Score=196.17 Aligned_cols=77 Identities=44% Similarity=0.673 Sum_probs=72.3
Q ss_pred cccccc---eecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcc
Q psy4862 5 EKEEER---KGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLS 74 (81)
Q Consensus 5 ~~~~~~---~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~ 74 (81)
.+.|.+ +||||++ |+|++.+.+|+|+|||||||||+||+|||+||++|++||+|+|||++.+||||+.|+
T Consensus 247 ~R~Dlr~l~~~TID~~~akD~DDAv~~~~l~~g~~~LgVhIADVs~yV~p~s~LD~EA~~RgtSVYlp~~vipMLPe~Ls 326 (706)
T COG0557 247 GRVDLRDLPIFTIDPEDAKDLDDAVSVEKLRNGGYRLGVHIADVSHYVQPGSALDKEARKRGTSVYLPDRVIPMLPEALS 326 (706)
T ss_pred CccccccCCEEEECCCCCccccceEEEEEeCCCcEEEEEEEecceeecCCCChhhHHHHHcCCeEEcCCcccCCCchhhc
Confidence 355655 9999986 799999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccC
Q psy4862 75 GNLCSLR 81 (81)
Q Consensus 75 ~~~~SL~ 81 (81)
+++|||+
T Consensus 327 ~~lcSL~ 333 (706)
T COG0557 327 NGLCSLN 333 (706)
T ss_pred CCccccC
Confidence 9999995
No 2
>PRK05054 exoribonuclease II; Provisional
Probab=99.95 E-value=2.4e-28 Score=194.80 Aligned_cols=74 Identities=34% Similarity=0.381 Sum_probs=70.8
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+|++++++|+|+|||||||||+||++||+||++|++||+|+|||++++||||+.|++++|||
T Consensus 195 ~~~~~TID~~~akD~DDAisve~~~~g~~~l~VHIADVs~yV~~gS~LD~eA~~RgtSvYlp~~vipMLP~~Ls~~~cSL 274 (644)
T PRK05054 195 ALDFVTIDSASTEDMDDALYVEKLPDGGLQLTVAIADPTAYIAEGSKLDKAARQRAFTNYLPGFNIPMLPRELSDDLCSL 274 (644)
T ss_pred CCcEEEECCCCCCcccceEEEEEeCCCCEEEEEEEcchhhEeCCCCHHHHHHHHhCceEeCCCCcccCCChHHhcCcccc
Confidence 4778999998 789999988999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 275 ~ 275 (644)
T PRK05054 275 R 275 (644)
T ss_pred C
Confidence 5
No 3
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=99.95 E-value=3.9e-28 Score=193.62 Aligned_cols=74 Identities=34% Similarity=0.400 Sum_probs=70.7
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+|+++.++|+|+||||||||++||++||+||++|++||+|+|||++++||||+.|++++|||
T Consensus 191 ~~~~~TID~~~akD~DDAisie~~~~g~~~L~VHIADVs~yV~~gS~LD~eA~~RgtSvYLp~~vipMLP~~Ls~~~cSL 270 (639)
T TIGR02062 191 ALDFVTIDSESTKDMDDALFAEALPNGKLQLIVAIADPTAYIAEGSKLDKAAKIRGFTNYLPGFNIPMLPRELSDDLCSL 270 (639)
T ss_pred cCCEEEECCCCCCcccceEEEEEeCCCcEEEEEEEcCccccCCCCCHHHHHHHHhCCcEeCCCceecCCCHHHhcCcccc
Confidence 4678999988 799999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 271 ~ 271 (639)
T TIGR02062 271 R 271 (639)
T ss_pred C
Confidence 5
No 4
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=99.95 E-value=3.4e-28 Score=193.98 Aligned_cols=74 Identities=35% Similarity=0.398 Sum_probs=70.7
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+|++++++|+|+|||||||||+||++||+||++|++||||+|||++++||||+.|++++|||
T Consensus 199 ~~~~~TID~~~a~D~DDAisie~~~~g~~~l~VHIADVs~~V~~~s~LD~eA~~R~tSvYlp~~~ipMLP~~Ls~~~cSL 278 (654)
T TIGR00358 199 DLAFVTIDGADAKDLDDAVYVKKLPDGGWKLYVAIADVSYYVAENSPLDKEAKHRGFSVYLPGFVIPMLPEELSNGLCSL 278 (654)
T ss_pred cCcEEEECCCCCCcccceEEEEEeCCCcEEEEEEEechhheeCCCCHHHHHHHHhCcCccCCCCeecCCCHHHhcCcccc
Confidence 4788999987 799999888999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 279 ~ 279 (654)
T TIGR00358 279 N 279 (654)
T ss_pred C
Confidence 5
No 5
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=99.95 E-value=4.8e-28 Score=193.93 Aligned_cols=74 Identities=39% Similarity=0.566 Sum_probs=70.8
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+|+++.++|+|+|||||||||+||++||+||++|++||+|+|||++++||||+.|++++|||
T Consensus 251 ~~~~~tID~~~a~D~DDAisie~~~~g~~~l~VhIADVs~~V~~~s~lD~eA~~R~tSvYlp~~~ipMLP~~Ls~~~cSL 330 (709)
T TIGR02063 251 DLPFVTIDGEDAKDFDDAVYVEKLKDGNYKLGVAIADVSHYVREGSALDKEALKRGTSVYLPDRVIPMLPERLSNGICSL 330 (709)
T ss_pred cCcEEEECCCCCcccccEEEEEEcCCCCEEEEEEEechhhEeCCCChHHHHHHHhCeeEeCCCCcccCCChHHccCcccc
Confidence 4779999996 799999988999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 331 ~ 331 (709)
T TIGR02063 331 N 331 (709)
T ss_pred C
Confidence 5
No 6
>PF00773 RNB: RNB domain CAUTION: The Prosite pattern does not correspond to this Pfam.; InterPro: IPR001900 This entry represents the catalytic domain of ribonuclease II []. It includes characterised and related sequences to exoribonuclease II (RNase II) and ribonuclease R, a bacterial 3' --> 5' exoribonuclease homologous to RNase II [,,].; GO: 0003723 RNA binding, 0004540 ribonuclease activity; PDB: 2R7D_A 2R7F_A 2ID0_D 2IX1_A 2IX0_A 2VNU_D 2WP8_J.
Probab=99.94 E-value=6.7e-28 Score=176.36 Aligned_cols=75 Identities=45% Similarity=0.644 Sum_probs=65.7
Q ss_pred cccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCccc
Q psy4862 7 EEERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCS 79 (81)
Q Consensus 7 ~~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~S 79 (81)
.+.++||||++ |+||++.++|+|+|||||||||+||++||+||++|++||+|+|||++++||||+.|++++||
T Consensus 5 ~~~~~~tID~~~~~d~DDAisie~~~~~~~~v~VHIaDvt~~i~~~s~ld~~A~~r~~s~Ylp~~~~pMlP~~l~~~~~S 84 (325)
T PF00773_consen 5 RDLPVFTIDPPGAKDIDDAISIEKLPDGKYEVGVHIADVTSFIPPDSPLDREARKRGTSVYLPEKVVPMLPPELSEDLCS 84 (325)
T ss_dssp TTSEEEEEESTTSS---EEEEEEEETTTEEEEEEEEE-GGGTS-TTSHHHHHHHHH-B-EEETTEEE-SS-HHHHCTTSS
T ss_pred CCCCEEEEcCCCCCCCCCeEEEEECCCCcEEEEEEcCCHHHhhccChHHHHHHHhcCccEECCCCccccCChhHhccccc
Confidence 46889999986 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy4862 80 LR 81 (81)
Q Consensus 80 L~ 81 (81)
|.
T Consensus 85 L~ 86 (325)
T PF00773_consen 85 LN 86 (325)
T ss_dssp TT
T ss_pred CC
Confidence 95
No 7
>PRK11642 exoribonuclease R; Provisional
Probab=99.94 E-value=1.1e-27 Score=195.09 Aligned_cols=74 Identities=38% Similarity=0.507 Sum_probs=70.7
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+||++.++|+|+|||||||||+||++||+||++|++||+|+|||++++||||+.|++++|||
T Consensus 265 ~l~~vTID~~~akD~DDAvsie~~~~g~~~L~VHIADVs~yV~~gS~LD~eA~~RgtSvYlpd~viPMLP~~Lsn~lcSL 344 (813)
T PRK11642 265 DLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSL 344 (813)
T ss_pred cCcEEEECCCCCCcccceEEEEEeCCCcEEEEEEecchhheeCCCCHHHHHHHHhCCeEeCCCceeeCCCHHHhcCcccc
Confidence 4778999988 799999988999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 345 ~ 345 (813)
T PRK11642 345 N 345 (813)
T ss_pred C
Confidence 5
No 8
>KOG2102|consensus
Probab=99.87 E-value=3.5e-23 Score=170.91 Aligned_cols=74 Identities=55% Similarity=0.786 Sum_probs=69.8
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+..+|+||++ |+|+..++||+|+||||||||++||.||++||++|++||||+||+++.+||||+.|++++|||
T Consensus 478 ~~~i~~IDp~~~~dlDdAL~~~~l~nG~~evGVHIADVt~fV~pgs~lD~eA~~R~ttvyL~q~~i~MLP~~L~~~lcSL 557 (941)
T KOG2102|consen 478 DLLIFSIDPPGATDLDDALHVRNLPNGNLEVGVHIADVTHFVKPGSALDREAARRGTTVYLVQKRIPMLPKLLSEELCSL 557 (941)
T ss_pred hceEEeecCCCccchhhhhheeecCCCcEEEEEEeccchhhcCCCCccCHHHHhhcceEEeccccccCCchhhhhhheec
Confidence 3567899988 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 558 ~ 558 (941)
T KOG2102|consen 558 R 558 (941)
T ss_pred c
Confidence 5
No 9
>COG4776 Rnb Exoribonuclease II [Transcription]
Probab=99.78 E-value=1.1e-19 Score=142.36 Aligned_cols=77 Identities=35% Similarity=0.432 Sum_probs=71.3
Q ss_pred cccc---cceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcc
Q psy4862 5 EKEE---ERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLS 74 (81)
Q Consensus 5 ~~~~---~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~ 74 (81)
.+|| +.+.+||.+ ++.+++.++|.|.|-|+||||++||.+||.||++|++|+.|.|||+..+||||++|+
T Consensus 189 ~RedLTaL~FvTID~~sT~DmDDALy~~~~~~~~~~L~vAIADPTAyI~~~s~ld~~A~~R~FTnYLPGfNIPMLPreLs 268 (645)
T COG4776 189 VREDLTALDFVTIDSESTEDMDDALYAEPLPDGDWQLIVAIADPTAYIAEGSKLDKEAKIRAFTNYLPGFNIPMLPRELS 268 (645)
T ss_pred hhccccccceEEecCccccccchhhhccccCCCcEEEEEEecCCccccCCcchhhHHHHHHHHhhcCCCCCCCCCChhhh
Confidence 4555 556899987 688999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccC
Q psy4862 75 GNLCSLR 81 (81)
Q Consensus 75 ~~~~SL~ 81 (81)
.++|||.
T Consensus 269 d~lCSL~ 275 (645)
T COG4776 269 DDLCSLR 275 (645)
T ss_pred hhhhhcc
Confidence 9999994
No 10
>PF02884 Lyase_8_C: Polysaccharide lyase family 8, C-terminal beta-sandwich domain; InterPro: IPR004103 Proteins containing this domain consist of a group of secreted bacterial lyase enzymes capable of acting on hyaluronan (hyaluronate lyase, 4.2.2.1 from EC) and chondroitin (chondroitin AC lyase, 4.2.2.5 from EC) in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen [, ]. This domain is almost always associated with the polysaccharide lyase family 8, N-terminal domain (see IPR003159 from INTERPRO). This entry represents the C-terminal domain of hyaluronate and chondroitin AC lyase enzymes.; GO: 0016829 lyase activity, 0005576 extracellular region; PDB: 1RWG_A 1RWC_A 1RWF_A 1RWH_A 1RWA_A 1RW9_A 1X1I_A 1X1H_A 1J0M_A 1X1J_A ....
Probab=66.06 E-value=5.4 Score=23.37 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=18.8
Q ss_pred ecccCCCceEEEcCCCcEEEEEEecCccce
Q psy4862 12 GSEEPETKKRKKKSKKKGEVGVHIADVSHF 41 (81)
Q Consensus 12 ~siD~~~~sie~~~~g~~~l~VHIADva~~ 41 (81)
+++|-++.-..+..+|+ +.+.||||+.-
T Consensus 36 i~~~~p~~v~~~~~~~~--~~lsvsDPtq~ 63 (71)
T PF02884_consen 36 ITVDKPCSVMIKKTGDG--YTLSVSDPTQK 63 (71)
T ss_dssp EEESSSEEEEEEEETTE--EEEEEEETTST
T ss_pred EEECCCEEEEEEECCCe--EEEEEECCCCC
Confidence 67777766555555555 66778899864
No 11
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=62.27 E-value=23 Score=21.64 Aligned_cols=43 Identities=7% Similarity=0.102 Sum_probs=31.6
Q ss_pred cceecccCCCceEEEcCCCcEEEEEEecC-ccceecCCCHHHHH
Q psy4862 9 ERKGSEEPETKKRKKKSKKKGEVGVHIAD-VSHFIKPGTPLDEE 51 (81)
Q Consensus 9 ~~~~siD~~~~sie~~~~g~~~l~VHIAD-va~~i~~~s~Ld~~ 51 (81)
.+-++||+..+.+...+.+....-|++.+ =+.++..+++-++.
T Consensus 39 ~~~G~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~ 82 (91)
T cd01247 39 GCRGSIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRL 82 (91)
T ss_pred CCcEEEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHH
Confidence 35699999977666555455677777777 78888888887754
No 12
>PF05800 GvpO: Gas vesicle synthesis protein GvpO; InterPro: IPR008634 This family consists of archaeal GvpO proteins which are required for gas vesicle synthesis []. The family also contain related sequences from bacteria.; GO: 0031412 gas vesicle organization
Probab=55.67 E-value=13 Score=23.98 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=21.0
Q ss_pred ceEEEcCCCcEEEEEEecCccceecCCC
Q psy4862 19 KKRKKKSKKKGEVGVHIADVSHFIKPGT 46 (81)
Q Consensus 19 ~sie~~~~g~~~l~VHIADva~~i~~~s 46 (81)
.++++.++|+|++.|-|-....+..-.+
T Consensus 42 ~~~~~~edgGW~v~VEVvE~~ripdt~d 69 (100)
T PF05800_consen 42 SSVERTEDGGWRVVVEVVEDRRIPDTMD 69 (100)
T ss_pred EEEeecCCCCeEEEEEEeeecccCcccc
Confidence 4578888888999999888776554433
No 13
>PF15532 Toxin_53: Putative toxin 53
Probab=49.63 E-value=23 Score=23.01 Aligned_cols=13 Identities=38% Similarity=0.302 Sum_probs=11.7
Q ss_pred cEEEEEEecCccc
Q psy4862 28 KGEVGVHIADVSH 40 (81)
Q Consensus 28 ~~~l~VHIADva~ 40 (81)
+|+|.||=+|+++
T Consensus 35 tyrvRvH~~Dp~a 47 (102)
T PF15532_consen 35 TYRVRVHPADPTA 47 (102)
T ss_pred eEEEEecCCCCCC
Confidence 6999999999965
No 14
>PF14035 YlzJ: YlzJ-like protein
Probab=42.70 E-value=36 Score=20.00 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=21.3
Q ss_pred ceEEEcCCCcEE-EEEEecCccceecC
Q psy4862 19 KKRKKKSKKKGE-VGVHIADVSHFIKP 44 (81)
Q Consensus 19 ~sie~~~~g~~~-l~VHIADva~~i~~ 44 (81)
+-|++.++|.++ +.+==.||..|++|
T Consensus 31 l~Ve~~~~~~~~IvRllStnP~dYLnp 57 (66)
T PF14035_consen 31 LLVEPVEGGQYRIVRLLSTNPQDYLNP 57 (66)
T ss_pred EEEEECCCCcEEEEEEecCChHHHcCc
Confidence 446788888887 78888999999986
No 15
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=40.40 E-value=49 Score=16.34 Aligned_cols=28 Identities=7% Similarity=-0.085 Sum_probs=16.7
Q ss_pred ccccceecccCCCceEEEcCC--CcEEEEE
Q psy4862 6 KEEERKGSEEPETKKRKKKSK--KKGEVGV 33 (81)
Q Consensus 6 ~~~~~~~siD~~~~sie~~~~--g~~~l~V 33 (81)
.+..+++|.|-..+.-....+ |.+.|||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 455677888877544333334 7788775
No 16
>KOG2585|consensus
Probab=37.43 E-value=33 Score=27.57 Aligned_cols=57 Identities=14% Similarity=-0.021 Sum_probs=39.4
Q ss_pred cceecccCC-CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeec
Q psy4862 9 ERKGSEEPE-TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRID 67 (81)
Q Consensus 9 ~~~~siD~~-~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~p 67 (81)
.++.|||.+ +..++..... ...+-..+|+..|..+-++-....-+|-.+||.++-+|
T Consensus 370 i~I~SVDiPsGwdve~G~~s--~~~~~~~~p~~lisltaPk~~~~~~~g~~hyLggrgIP 427 (453)
T KOG2585|consen 370 IPILSVDIPSGWDVEKGSPS--IGDAKTITPDALISLTAPKPCSKQATGNKHYLGGRGIP 427 (453)
T ss_pred CceEEecCCCccccccCCcc--cccccccCcchhhhccCcHHHHHhhcCCceEEccCCCC
Confidence 457899998 6777664321 12233345777788888877777778889999998654
No 17
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=35.66 E-value=41 Score=21.95 Aligned_cols=28 Identities=36% Similarity=0.343 Sum_probs=17.8
Q ss_pred ecCccceecCC--C--HHHHHHHhccCeeecC
Q psy4862 35 IADVSHFIKPG--T--PLDEEAALRATTVYLV 62 (81)
Q Consensus 35 IADva~~i~~~--s--~Ld~~A~~R~~t~Ylp 62 (81)
|.||=+-|++. | .|..+|.+||..+|.-
T Consensus 6 vmDpi~~i~~~kDTT~alm~eAq~RGhev~~~ 37 (119)
T PF02951_consen 6 VMDPIESIKPYKDTTFALMLEAQRRGHEVFYY 37 (119)
T ss_dssp EES-GGG--TTT-HHHHHHHHHHHTT-EEEEE
T ss_pred EeCCHHHCCCCCChHHHHHHHHHHCCCEEEEE
Confidence 45776777664 4 3779999999998864
No 18
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=33.29 E-value=6.6 Score=23.95 Aligned_cols=14 Identities=29% Similarity=0.505 Sum_probs=11.8
Q ss_pred EEEEecCccceecC
Q psy4862 31 VGVHIADVSHFIKP 44 (81)
Q Consensus 31 l~VHIADva~~i~~ 44 (81)
-.|||.|.|.||+.
T Consensus 57 ~~V~v~dLA~yiD~ 70 (76)
T PF11112_consen 57 KFVHVQDLAAYIDK 70 (76)
T ss_pred ceeeHHHHHHHHHH
Confidence 47999999999864
No 19
>KOG3084|consensus
Probab=27.71 E-value=51 Score=25.65 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=31.7
Q ss_pred cCccceecCCCHHHHHHHhc---------cCeeecCCCeecCCChhccc
Q psy4862 36 ADVSHFIKPGTPLDEEAALR---------ATTVYLVDKRIDMVPGLLSG 75 (81)
Q Consensus 36 ADva~~i~~~s~Ld~~A~~R---------~~t~Ylp~~~~pMLP~~l~~ 75 (81)
+-+|-|++||..+.+.+++- +.-.|.....+||+|.+|.-
T Consensus 216 t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~SLMI 264 (345)
T KOG3084|consen 216 TCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQSLMI 264 (345)
T ss_pred hhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCchHHHH
Confidence 34569999999999988863 23458889999999988763
No 20
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3. S3 is part of the head region of the 40S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.61 E-value=1.6e+02 Score=17.72 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=24.2
Q ss_pred ceEEEcCCCcEEEEEEecCccceecC-CCHHHHHHH
Q psy4862 19 KKRKKKSKKKGEVGVHIADVSHFIKP-GTPLDEEAA 53 (81)
Q Consensus 19 ~sie~~~~g~~~l~VHIADva~~i~~-~s~Ld~~A~ 53 (81)
+.++++.+ ..+|-||.|-|...|-. |..+++...
T Consensus 23 IeI~Rt~~-~i~I~I~tarPg~vIG~~G~~i~~L~~ 57 (81)
T cd02413 23 VEVRVTPT-RTEIIIRATRTQNVLGEKGRRIRELTS 57 (81)
T ss_pred EEEEEcCC-eEEEEEEeCCCceEECCCchhHHHHHH
Confidence 44677654 58999999999999955 455554433
No 21
>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]
Probab=25.02 E-value=28 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.2
Q ss_pred cCCCHHHHHHHhccCeeecCC
Q psy4862 43 KPGTPLDEEAALRATTVYLVD 63 (81)
Q Consensus 43 ~~~s~Ld~~A~~R~~t~Ylp~ 63 (81)
+.|..||-.-.++|+++|||=
T Consensus 156 ~~GGNlD~k~l~~GstvylPV 176 (305)
T COG2421 156 EHGGNLDIKDLTEGSTVYLPV 176 (305)
T ss_pred ccCCcCChhhccCCCEEEEEE
Confidence 457889988899999999983
No 22
>PRK13720 modulator of post-segregation killing protein; Provisional
Probab=24.88 E-value=40 Score=20.28 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=12.9
Q ss_pred EEEEEEecCccceecC
Q psy4862 29 GEVGVHIADVSHFIKP 44 (81)
Q Consensus 29 ~~l~VHIADva~~i~~ 44 (81)
..|-||+.||-+.|+-
T Consensus 37 h~V~IH~pDpes~vr~ 52 (70)
T PRK13720 37 HTVDIHLSDTKIAVRD 52 (70)
T ss_pred eEEeeccCCCcccccC
Confidence 4688999999988753
No 23
>PF15580 Imm33: Immunity protein 33
Probab=23.73 E-value=91 Score=19.64 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=13.9
Q ss_pred CceEEEcCCCcEEEEEEecC
Q psy4862 18 TKKRKKKSKKKGEVGVHIAD 37 (81)
Q Consensus 18 ~~sie~~~~g~~~l~VHIAD 37 (81)
+++|..++|-+|+|.|=+.+
T Consensus 21 Gi~I~TlDNPGW~v~Idl~e 40 (90)
T PF15580_consen 21 GISISTLDNPGWSVEIDLSE 40 (90)
T ss_pred CCeEecccCCCeEEEEeccc
Confidence 56777777777877775543
No 24
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=23.55 E-value=52 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.0
Q ss_pred cCCCcEEEEEEecCccceecC
Q psy4862 24 KSKKKGEVGVHIADVSHFIKP 44 (81)
Q Consensus 24 ~~~g~~~l~VHIADva~~i~~ 44 (81)
.+++.|+||||..+|...+..
T Consensus 38 ~~~~~~kVHvHT~~Pg~vle~ 58 (313)
T PF13684_consen 38 GDDDLVKVHVHTNDPGAVLEY 58 (313)
T ss_pred ecCCeEEEEEeeCCHHHHHHH
Confidence 456789999999999887654
No 25
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.46 E-value=17 Score=25.17 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.4
Q ss_pred EEEEEEecCccceecCCCHHHHHHHhccCeeec
Q psy4862 29 GEVGVHIADVSHFIKPGTPLDEEAALRATTVYL 61 (81)
Q Consensus 29 ~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Yl 61 (81)
|.| --|||+...+..|+++....-+.|.-.|+
T Consensus 101 YvV-tpIaDvG~RvrkGd~~AAvttRkG~vryv 132 (161)
T COG4072 101 YVV-TPIADVGNRVRKGDPFAAVTTRKGEVRYV 132 (161)
T ss_pred EEE-EEeecccchhcCCCceeEEEecccceEEe
Confidence 544 46999999999999999887778877776
No 26
>PRK15463 cold shock-like protein CspF; Provisional
Probab=23.42 E-value=54 Score=19.30 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.6
Q ss_pred cCCCcEEEEEEecCccce
Q psy4862 24 KSKKKGEVGVHIADVSHF 41 (81)
Q Consensus 24 ~~~g~~~l~VHIADva~~ 41 (81)
.++|+-.|.|||.++...
T Consensus 23 ~~~g~~DvFvH~sal~~~ 40 (70)
T PRK15463 23 PSDGRKDVQVHISALNLR 40 (70)
T ss_pred cCCCCccEEEEehhhhhc
Confidence 345667899999988753
No 27
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=23.35 E-value=1.8e+02 Score=17.51 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=24.6
Q ss_pred ccccceecccCCCceEEEcCCC-cEEEEEEecCccceecCCCHHH
Q psy4862 6 KEEERKGSEEPETKKRKKKSKK-KGEVGVHIADVSHFIKPGTPLD 49 (81)
Q Consensus 6 ~~~~~~~siD~~~~sie~~~~g-~~~l~VHIADva~~i~~~s~Ld 49 (81)
.+..+.++||+..+++...++. .+...|...+=+.++..+|.-+
T Consensus 38 ~d~~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e 82 (95)
T cd01265 38 QDAKPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSDKQ 82 (95)
T ss_pred CcccccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCHHH
Confidence 3446778888887655433221 3344455555555666666544
No 28
>PRK00468 hypothetical protein; Provisional
Probab=23.26 E-value=1.8e+02 Score=17.44 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred cccCCCceEEEcCCC---cEEEEEEecCccceecCCCHHHHH
Q psy4862 13 SEEPETKKRKKKSKK---KGEVGVHIADVSHFIKPGTPLDEE 51 (81)
Q Consensus 13 siD~~~~sie~~~~g---~~~l~VHIADva~~i~~~s~Ld~~ 51 (81)
--+|+.+.++..+++ .|+|.||=.|....|-.++..-+.
T Consensus 13 Vd~Pe~v~V~~~~~~~~~~~~l~v~~~D~GrVIGk~Gr~i~A 54 (75)
T PRK00468 13 VDNPDAVQVNEIEGEQSVILELKVAPEDMGKVIGKQGRIAKA 54 (75)
T ss_pred cCCCCeEEEEEEeCCCeEEEEEEEChhhCcceecCCChhHHH
Confidence 345667777654332 356777888999999887765543
No 29
>TIGR03599 YloV DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.
Probab=23.09 E-value=50 Score=26.74 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.2
Q ss_pred CCCcEEEEEEecCccceecCC
Q psy4862 25 SKKKGEVGVHIADVSHFIKPG 45 (81)
Q Consensus 25 ~~g~~~l~VHIADva~~i~~~ 45 (81)
+++.|+||||..||...+..+
T Consensus 258 ~~~~~kVHvHt~~Pg~vle~~ 278 (530)
T TIGR03599 258 DDDLVKVHVHTNDPGLVLEYG 278 (530)
T ss_pred CCCeEEEEEecCCHHHHHHHH
Confidence 567899999999998877553
No 30
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=22.96 E-value=60 Score=17.75 Aligned_cols=26 Identities=12% Similarity=-0.060 Sum_probs=16.8
Q ss_pred CceEEEcCCCcEEEEEEecCccceec
Q psy4862 18 TKKRKKKSKKKGEVGVHIADVSHFIK 43 (81)
Q Consensus 18 ~~sie~~~~g~~~l~VHIADva~~i~ 43 (81)
.++...++.|.|.|.|-..|...-..
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWS 55 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcC
Confidence 45566788899999999888665443
No 31
>PF13115 YtkA: YtkA-like
Probab=20.93 E-value=51 Score=19.22 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.6
Q ss_pred CCCcEEEEEE
Q psy4862 25 SKKKGEVGVH 34 (81)
Q Consensus 25 ~~g~~~l~VH 34 (81)
..|.|.|.||
T Consensus 77 m~G~W~i~vh 86 (86)
T PF13115_consen 77 MAGTWQITVH 86 (86)
T ss_pred CCeeEEEEEC
Confidence 4677888887
No 32
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=20.60 E-value=90 Score=15.62 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=11.7
Q ss_pred eecCCCHHHHHHHhccCee
Q psy4862 41 FIKPGTPLDEEAALRATTV 59 (81)
Q Consensus 41 ~i~~~s~Ld~~A~~R~~t~ 59 (81)
-|++|..+...|++-+.+.
T Consensus 2 ~V~~gDtl~~IA~~~~~~~ 20 (44)
T PF01476_consen 2 TVQPGDTLWSIAKRYGISV 20 (44)
T ss_dssp EE-TT--HHHHHHHTTS-H
T ss_pred EECcCCcHHHHHhhhhhhH
Confidence 4788899999998877653
No 33
>PF12628 Inhibitor_I71: Falstatin, cysteine peptidase inhibitor; InterPro: IPR024321 This family of peptidase inhibitors is expressed in plasmodial protozoal species. Falstatin is found to be a potent reversible inhibitor of the P. falciparum cysteine proteases falcipain-2 and falcipain-3, as well as other parasite- and non-parasite-derived cysteine proteases, but is only a relatively weak inhibitor of the P. falciparum cysteine proteases falcipain-1 and dipeptidyl aminopeptidase 1. Thus, P. falciparum requires expression of falstatin to limit proteolysis by certain host or parasite cysteine proteases during erythrocyte invasion [].; PDB: 3PNR_B.
Probab=20.37 E-value=52 Score=23.12 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=15.8
Q ss_pred eecccCCCceEEEcCCCcEE--EEEE----ecCccceecCCCHHHHHHHhccCeeecCCCe
Q psy4862 11 KGSEEPETKKRKKKSKKKGE--VGVH----IADVSHFIKPGTPLDEEAALRATTVYLVDKR 65 (81)
Q Consensus 11 ~~siD~~~~sie~~~~g~~~--l~VH----IADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~ 65 (81)
++|||++++ ..+|-.| |+|| +.+|..|= ++|.+--|+-+..
T Consensus 39 ~lCi~le~~----~GnGy~W~LLGVhk~~P~InPe~FP----------tK~~tks~fs~eI 85 (173)
T PF12628_consen 39 VLCIDLESI----AGNGYLWALLGVHKEKPQINPENFP----------TKRVTKSYFSNEI 85 (173)
T ss_dssp EEEEEEEEE----TTSS-EEEEEEEESS-----GGGS-----------SS-----EE-SSE
T ss_pred EEEEEeecc----CCceEEEEEeeecccCCccChhHCc----------hhhhchhhccCcc
Confidence 466666554 1344333 7888 34444443 3355555555443
No 34
>KOG2096|consensus
Probab=20.15 E-value=92 Score=24.62 Aligned_cols=38 Identities=13% Similarity=-0.061 Sum_probs=24.7
Q ss_pred eecccCCCceEEEcCCCcEEEEEEecCccceecCCCHHHHH
Q psy4862 11 KGSEEPETKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEE 51 (81)
Q Consensus 11 ~~siD~~~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~ 51 (81)
+||.++.-+ +....||.|+||= .||-+-...+..+=|+
T Consensus 285 aFsn~S~r~-vtvSkDG~wriwd--tdVrY~~~qDpk~Lk~ 322 (420)
T KOG2096|consen 285 AFSNSSTRA-VTVSKDGKWRIWD--TDVRYEAGQDPKILKE 322 (420)
T ss_pred eeCCCccee-EEEecCCcEEEee--ccceEecCCCchHhhc
Confidence 466666632 2334689999985 4887777777666544
No 35
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=20.14 E-value=69 Score=21.68 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=16.6
Q ss_pred CCCcEEEEEEecCccceecCCCHHHHHHHhccC
Q psy4862 25 SKKKGEVGVHIADVSHFIKPGTPLDEEAALRAT 57 (81)
Q Consensus 25 ~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~ 57 (81)
+-|+.||||| | -++.+-+...++|-
T Consensus 34 e~G~~wvWi~--D------N~~~~vRALl~~gr 58 (132)
T PF14468_consen 34 EFGNAWVWIH--D------NQSEVVRALLQAGR 58 (132)
T ss_pred hcCceEEEEe--c------CcCHHHHHHHHcCc
Confidence 3478999999 3 45666666666554
Done!