Query psy4862
Match_columns 81
No_of_seqs 121 out of 1020
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 19:35:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id0_A Exoribonuclease 2; RNAs 100.0 1.7E-29 5.9E-34 199.7 5.3 73 9-81 195-274 (644)
2 2r7d_A Ribonuclease II family 100.0 4.3E-29 1.5E-33 192.1 5.6 73 8-81 86-165 (469)
3 2vnu_D Exosome complex exonucl 99.9 6.8E-29 2.3E-33 199.2 5.5 73 9-81 296-375 (760)
4 2wp8_J Exosome complex exonucl 99.9 4.1E-28 1.4E-32 199.2 5.2 73 9-81 513-592 (977)
5 3fz2_A Minor tail protein U; m 39.0 19 0.00063 23.4 2.2 29 24-55 56-87 (134)
6 3zui_A OMCI, complement inhibi 32.3 39 0.0013 22.3 3.0 28 9-36 90-119 (150)
7 2lj0_A Sorbin and SH3 domain-c 29.5 44 0.0015 18.2 2.6 17 21-37 33-49 (65)
8 1j5p_A Aspartate dehydrogenase 27.7 37 0.0013 23.9 2.4 31 37-67 91-123 (253)
9 2omz_B Epithelial-cadherin; le 27.4 68 0.0023 18.8 3.3 30 10-39 53-88 (105)
10 1e0g_A Membrane-bound lytic mu 20.1 41 0.0014 16.4 1.1 20 40-59 5-24 (48)
No 1
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=99.95 E-value=1.7e-29 Score=199.69 Aligned_cols=73 Identities=36% Similarity=0.406 Sum_probs=70.3
Q ss_pred cceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCccccC
Q psy4862 9 ERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81 (81)
Q Consensus 9 ~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL~ 81 (81)
.++||||++ |+||+++++|+|+|||||||||+||+|||+||++|++||||+|||++++||||+.|++++|||+
T Consensus 195 l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~~~iPMLP~~Ls~~lcSL~ 274 (644)
T 2id0_A 195 LDFVTIDSASTEDMDDALFAKALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274 (644)
T ss_dssp SCCBEEECSSCSCCCEEEEECCCSSSCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCC
T ss_pred CcEEEEcCCCCCcccceEEEEEcCCCCEEEEEEeccHHHeeCCCCHHHHHHHHhCCcEeCCCEEEeCCCHHHhcCcccCC
Confidence 678999987 7999999999999999999999999999999999999999999999999999999999999995
No 2
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=99.95 E-value=4.3e-29 Score=192.06 Aligned_cols=73 Identities=30% Similarity=0.383 Sum_probs=69.6
Q ss_pred ccceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCcccc
Q psy4862 8 EERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80 (81)
Q Consensus 8 ~~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL 80 (81)
+.++||||++ |+|++++++|+|+||||||||++||+|||+||++|++||||+|||++++||||+.| +++|||
T Consensus 86 ~l~~~TID~~~a~D~DDAvsve~~~~g~~~l~VHIADVs~~V~~gs~LD~eA~~RgtSvYlp~~~ipMLP~~L-~~~cSL 164 (469)
T 2r7d_A 86 HLPTFAIDDEGNQDPDDAVGVEDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDEL-VAKAGL 164 (469)
T ss_dssp TSCEEEEECTTCCCCCEEEEEEECSTTCEEEEEEEECGGGTCCTTSHHHHHHHHHCBCEECSSCEECSSCHHH-HHHHST
T ss_pred cCCEEEEcCCCCCCccceEEEEEeCCCCEEEEEEeccHhheeCCCCHHHHHHHHhCceEecCCceEcCCChHH-hcccCC
Confidence 3678999998 68999999999999999999999999999999999999999999999999999999 899999
Q ss_pred C
Q psy4862 81 R 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 165 ~ 165 (469)
T 2r7d_A 165 G 165 (469)
T ss_dssp T
T ss_pred C
Confidence 5
No 3
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=99.95 E-value=6.8e-29 Score=199.25 Aligned_cols=73 Identities=58% Similarity=0.851 Sum_probs=70.4
Q ss_pred cceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCccccC
Q psy4862 9 ERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81 (81)
Q Consensus 9 ~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL~ 81 (81)
.++||||++ |+||+++++|+|+|||||||||+||+|||+||++|++||||+|||++++||||+.|++++|||+
T Consensus 296 l~~~TID~~~a~D~DDAvsie~~~~g~~~l~VHIADVs~yV~~gs~LD~eA~~RgtSvYlp~rviPMLP~~Ls~~lcSL~ 375 (760)
T 2vnu_D 296 KLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLK 375 (760)
T ss_dssp SCCEEEESSSCCCCCEEEEEEECTTSCEEEEEEEECHHHHSCTTSHHHHHHHHHCBCEECSSCEECSSCHHHHTTTSSCC
T ss_pred CeEEEEcCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEecCCceEeCCChHHcccccccC
Confidence 678999987 7999999999999999999999999999999999999999999999999999999999999995
No 4
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.1e-28 Score=199.17 Aligned_cols=73 Identities=58% Similarity=0.851 Sum_probs=70.4
Q ss_pred cceecccCC-------CceEEEcCCCcEEEEEEecCccceecCCCHHHHHHHhccCeeecCCCeecCCChhcccCccccC
Q psy4862 9 ERKGSEEPE-------TKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81 (81)
Q Consensus 9 ~~~~siD~~-------~~sie~~~~g~~~l~VHIADva~~i~~~s~Ld~~A~~R~~t~Ylp~~~~pMLP~~l~~~~~SL~ 81 (81)
.++||||++ |+|++++++|+|+|||||||||+||+|||+||++|++||||+|||++++||||+.|++++|||+
T Consensus 513 l~~~TID~~~akDlDDAvsie~~~~G~~~lgVHIADVs~yV~~gS~LD~eA~~RgtSvYLpdrviPMLP~~LS~~lcSL~ 592 (977)
T 2wp8_J 513 KLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLK 592 (977)
T ss_dssp SCCEEEECTTCSCCCEEEEEEECTTSCEEEEEEEECHHHHSCSSSHHHHHHHHHCBCEEETTEEECSSCHHHHTTTSSCC
T ss_pred CcEEEECCCCCCcccceEEEEEcCCCcEEEEEEeccHHHeeCCCCHHHHHHHHcCCcEeCCCceEeCCChHHhccccccC
Confidence 678999987 7999999999999999999999999999999999999999999999999999999999999995
No 5
>3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A {Enterobacteria phage lambda} SCOP: d.323.1.1 PDB: 3fzb_A 1z1z_A
Probab=38.96 E-value=19 Score=23.44 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=20.9
Q ss_pred cCCCcEEEEEEecCccceec---CCCHHHHHHHhc
Q psy4862 24 KSKKKGEVGVHIADVSHFIK---PGTPLDEEAALR 55 (81)
Q Consensus 24 ~~~g~~~l~VHIADva~~i~---~~s~Ld~~A~~R 55 (81)
++++.|+=-.||+ -|++ +++.||+++.++
T Consensus 56 ld~~~W~A~LhI~---vfLk~~~~ds~LD~w~ee~ 87 (134)
T 3fz2_A 56 LDSDTWQAELHIE---VFLPAQVPASELDAWMESR 87 (134)
T ss_dssp --CCEEEEEEEEE---EEEETTSCHHHHHHHHHHH
T ss_pred ccCceeeEEEEEE---EEEecCCChHHHHHHHHHH
Confidence 4577899888988 6775 457899988543
No 6
>3zui_A OMCI, complement inhibitor; immune system, SOFT TICK, argasid TICK, lipocalin comple; HET: PAM; 1.71A {Ornithodoros moubata} PDB: 3zuo_A* 2cm4_A* 2cm9_A*
Probab=32.35 E-value=39 Score=22.28 Aligned_cols=28 Identities=18% Similarity=-0.057 Sum_probs=20.0
Q ss_pred cceecccCCCceEEEcCCCc--EEEEEEec
Q psy4862 9 ERKGSEEPETKKRKKKSKKK--GEVGVHIA 36 (81)
Q Consensus 9 ~~~~siD~~~~sie~~~~g~--~~l~VHIA 36 (81)
+-+||-..-.=+|...++|+ +++|+|=+
T Consensus 90 tllYsdy~~~CdV~~~~~G~p~~ElW~~s~ 119 (150)
T 3zui_A 90 EVVYDSQSHHCHVDKVEKEVPDYEMWMLDA 119 (150)
T ss_dssp EEEEECTTSSEEEEEEESSSCEEEEEEETT
T ss_pred EEEEeCCCCceeEEEccCCCccEEEEEecC
Confidence 34455444356777778899 99999965
No 7
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=29.54 E-value=44 Score=18.25 Aligned_cols=17 Identities=18% Similarity=0.001 Sum_probs=10.0
Q ss_pred EEEcCCCcEEEEEEecC
Q psy4862 21 RKKKSKKKGEVGVHIAD 37 (81)
Q Consensus 21 ie~~~~g~~~l~VHIAD 37 (81)
|....+++||.+....+
T Consensus 33 v~~~~~~gWw~g~~~~~ 49 (65)
T 2lj0_A 33 VMEKCDDGWFVGTSRRT 49 (65)
T ss_dssp EEEECTTSEEEEEETTT
T ss_pred EeEeCCCCEEEEEECCC
Confidence 44444556888766443
No 8
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=27.69 E-value=37 Score=23.87 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=22.7
Q ss_pred CccceecCC--CHHHHHHHhccCeeecCCCeec
Q psy4862 37 DVSHFIKPG--TPLDEEAALRATTVYLVDKRID 67 (81)
Q Consensus 37 Dva~~i~~~--s~Ld~~A~~R~~t~Ylp~~~~p 67 (81)
-+..+.+++ ..|.+.|++-|.++|+|.+.++
T Consensus 91 S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~ 123 (253)
T 1j5p_A 91 STSAFADEVFRERFFSELKNSPARVFFPSGAIG 123 (253)
T ss_dssp CGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCC
T ss_pred ChhhhcCHHHHHHHHHHHHHCCCeEEecCCccc
Confidence 344444443 5688899999999999988665
No 9
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Probab=27.42 E-value=68 Score=18.79 Aligned_cols=30 Identities=17% Similarity=-0.128 Sum_probs=16.6
Q ss_pred ceecccCCC--ceEE-EcC---CCcEEEEEEecCcc
Q psy4862 10 RKGSEEPET--KKRK-KKS---KKKGEVGVHIADVS 39 (81)
Q Consensus 10 ~~~siD~~~--~sie-~~~---~g~~~l~VHIADva 39 (81)
..|+||+.+ +++. +++ ...|.|.|...|-.
T Consensus 53 ~~F~Id~~tG~I~~~~~LDrE~~~~y~l~V~A~D~g 88 (105)
T 2omz_B 53 GVFIIERETGWLKVTEPLDRERIATYTLFSHAVSSN 88 (105)
T ss_dssp TSEEECTTTCEEEECSCCCTTTCCEEEEEEEEECTT
T ss_pred CEEEEeCCCCEEEECccCCcCCCCeEEEEEEEEECC
Confidence 469999872 2221 111 23577777776643
No 10
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=20.12 E-value=41 Score=16.38 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=15.8
Q ss_pred ceecCCCHHHHHHHhccCee
Q psy4862 40 HFIKPGTPLDEEAALRATTV 59 (81)
Q Consensus 40 ~~i~~~s~Ld~~A~~R~~t~ 59 (81)
+.|++|..|...|++-+.++
T Consensus 5 y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 5 YRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp EEECTTCCHHHHHHHHTCCH
T ss_pred EEEcCCCcHHHHHHHHCcCH
Confidence 55789999999998877653
Done!