Your job contains 1 sequence.
>psy4862
MEEGEKEEERKGSEEPETKKRKKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVY
LVDKRIDMVPGLLSGNLCSLR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4862
(81 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
WB|WBGene00001001 - symbol:dis-3 species:6239 "Caenorhabd... 215 2.4e-16 1
RGD|1304646 - symbol:Dis3 "DIS3 mitotic control homolog (... 210 3.5e-16 1
UNIPROTKB|E1BXX6 - symbol:DIS3 "Uncharacterized protein" ... 213 4.0e-16 1
UNIPROTKB|F1RHF7 - symbol:DIS3 "Uncharacterized protein" ... 210 5.8e-16 1
UNIPROTKB|F2Z2C0 - symbol:DIS3 "Exosome complex exonuclea... 207 7.1e-16 1
UNIPROTKB|E2RNY6 - symbol:DIS3 "Uncharacterized protein" ... 210 8.3e-16 1
MGI|MGI:1919912 - symbol:Dis3 "DIS3 mitotic control homol... 210 8.3e-16 1
DICTYBASE|DDB_G0293614 - symbol:DDB_G0293614 "putative ex... 210 8.9e-16 1
ZFIN|ZDB-GENE-080213-3 - symbol:dis3 "DIS3 mitotic contro... 209 1.0e-15 1
UNIPROTKB|G3V1J5 - symbol:DIS3 "Exosome complex exonuclea... 207 1.3e-15 1
CGD|CAL0003527 - symbol:orf19.5229 species:5476 "Candida ... 208 1.5e-15 1
UNIPROTKB|Q9Y2L1 - symbol:DIS3 "Exosome complex exonuclea... 207 1.7e-15 1
POMBASE|SPBC26H8.10 - symbol:dis3 "3'-5' exoribonuclease ... 201 7.7e-15 1
SGD|S000005381 - symbol:DIS3 "Exosome core complex cataly... 198 1.7e-14 1
UNIPROTKB|G4NDV8 - symbol:MGG_00193 "Mitotic control prot... 196 2.7e-14 1
ASPGD|ASPL0000011287 - symbol:AN3657 species:162425 "Emer... 194 4.6e-14 1
DICTYBASE|DDB_G0268186 - symbol:DDB_G0268186 species:4468... 186 5.4e-13 1
POMBASE|SPAC2C4.07c - symbol:SPAC2C4.07c "ribonuclease II... 178 2.1e-12 1
DICTYBASE|DDB_G0278757 - symbol:DDB_G0278757 "DIS3-like e... 175 7.0e-12 1
GENEDB_PFALCIPARUM|MAL13P1.289 - symbol:MAL13P1.289 "mito... 173 8.6e-12 1
UNIPROTKB|Q8IDB6 - symbol:MAL13P1.289 "Mitotic control pr... 173 8.6e-12 1
UNIPROTKB|F1PK78 - symbol:DIS3L "Uncharacterized protein"... 170 1.7e-11 1
MGI|MGI:2143272 - symbol:Dis3l "DIS3 mitotic control homo... 169 2.2e-11 1
RGD|1308959 - symbol:Dis3l "DIS3 mitotic control homolog ... 169 2.3e-11 1
TIGR_CMR|BA_5334 - symbol:BA_5334 "ribonuclease R" specie... 166 3.3e-11 1
UNIPROTKB|Q8TF46 - symbol:DIS3L "DIS3-like exonuclease 1"... 167 3.7e-11 1
UNIPROTKB|Q5R5N8 - symbol:DIS3L "DIS3-like exonuclease 1"... 167 3.7e-11 1
UNIPROTKB|F1N1R4 - symbol:DIS3 "Uncharacterized protein" ... 164 6.7e-11 1
UNIPROTKB|Q0P4R5 - symbol:dis3l "DIS3-like exonuclease 1"... 164 7.5e-11 1
ZFIN|ZDB-GENE-070209-95 - symbol:dis3l "DIS3 mitotic cont... 164 7.7e-11 1
UNIPROTKB|A0JN80 - symbol:DIS3L "DIS3-like exonuclease 1"... 163 9.8e-11 1
UNIPROTKB|F1MEA6 - symbol:DIS3L "DIS3-like exonuclease 1"... 163 9.8e-11 1
FB|FBgn0039183 - symbol:Dis3 "Dis3" species:7227 "Drosoph... 162 1.1e-10 1
UNIPROTKB|E2QZ40 - symbol:DIS3L2 "Uncharacterized protein... 161 1.3e-10 1
UNIPROTKB|F1SJJ9 - symbol:DIS3L "Uncharacterized protein"... 162 1.3e-10 1
UNIPROTKB|I3LEH1 - symbol:DIS3L "Uncharacterized protein"... 162 1.3e-10 1
UNIPROTKB|F6XKS7 - symbol:DIS3L2 "Uncharacterized protein... 161 1.3e-10 1
ZFIN|ZDB-GENE-070705-171 - symbol:si:ch211-273k1.4 "si:ch... 159 2.4e-10 1
UNIPROTKB|H7C440 - symbol:DIS3L2 "DIS3-like exonuclease 2... 149 6.5e-10 1
UNIPROTKB|Q6GN11 - symbol:dis3l "DIS3-like exonuclease 1"... 155 6.9e-10 1
MGI|MGI:2442555 - symbol:Dis3l2 "DIS3 mitotic control hom... 153 9.0e-10 1
UNIPROTKB|E1B7R0 - symbol:DIS3L2 "Uncharacterized protein... 153 9.1e-10 1
RGD|1560168 - symbol:Dis3l2 "DIS3 mitotic control homolog... 153 9.2e-10 1
UNIPROTKB|Q8IYB7 - symbol:DIS3L2 "DIS3-like exonuclease 2... 149 2.5e-09 1
TAIR|locus:2203231 - symbol:AT1G77680 species:3702 "Arabi... 148 3.9e-09 1
UNIPROTKB|F1NKN5 - symbol:LOC100857630 "Uncharacterized p... 148 4.0e-09 1
UNIPROTKB|E1C372 - symbol:DIS3L2 "Uncharacterized protein... 145 6.5e-09 1
TIGR_CMR|GSU_1485 - symbol:GSU_1485 "ribonuclease R, puta... 141 1.4e-08 1
ASPGD|ASPL0000054659 - symbol:AN1158 species:162425 "Emer... 143 1.8e-08 1
TIGR_CMR|CHY_0289 - symbol:CHY_0289 "ribonuclease R" spec... 137 3.6e-08 1
DICTYBASE|DDB_G0285435 - symbol:DDB_G0285435 species:4468... 134 2.0e-07 1
UNIPROTKB|P21499 - symbol:rnr species:83333 "Escherichia ... 130 2.4e-07 1
WB|WBGene00018612 - symbol:F48E8.6 species:6239 "Caenorha... 125 8.5e-07 1
TIGR_CMR|CBU_1091 - symbol:CBU_1091 "ribonuclease R" spec... 118 4.1e-06 1
GENEDB_PFALCIPARUM|PFF0745c - symbol:PFF0745c "ribonuclea... 122 6.7e-06 1
UNIPROTKB|Q9KNY1 - symbol:rnr "Ribonuclease R" species:24... 116 7.5e-06 1
TIGR_CMR|VC_2599 - symbol:VC_2599 "ribonuclease R" specie... 116 7.5e-06 1
TIGR_CMR|SPO_3330 - symbol:SPO_3330 "ribonuclease R" spec... 113 1.4e-05 1
TIGR_CMR|CPS_4617 - symbol:CPS_4617 "ribonuclease R" spec... 113 1.6e-05 1
CGD|CAL0003016 - symbol:SSD1 species:5476 "Candida albica... 108 9.0e-05 1
UNIPROTKB|Q5AK62 - symbol:SSD1 "Putative uncharacterized ... 108 9.0e-05 1
POMBASE|SPCC16C4.09 - symbol:sts5 "RNB-like protein" spec... 107 9.3e-05 1
FB|FBgn0035111 - symbol:CG16940 species:7227 "Drosophila ... 103 0.00024 1
TIGR_CMR|SO_3935 - symbol:SO_3935 "ribonuclease R" specie... 100 0.00038 1
UNIPROTKB|P30850 - symbol:rnb "ribonuclease II" species:8... 96 0.00076 1
>WB|WBGene00001001 [details] [associations]
symbol:dis-3 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0051537 "2 iron, 2 sulfur cluster
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0043565 "sequence-specific DNA binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005737 GO:GO:0040010 GO:GO:0005730
GO:GO:0040018 GO:GO:0000003 GO:GO:0003723 GO:GO:0004527
GO:GO:0090305 GO:GO:0000178 GO:GO:0004540 GO:GO:0006364
eggNOG:COG0557 HOGENOM:HOG000191945 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 EMBL:Z70718 PIR:T18925 RefSeq:NP_501835.2
ProteinModelPortal:Q17632 SMR:Q17632 STRING:Q17632 PaxDb:Q17632
EnsemblMetazoa:C04G2.6 GeneID:177875 KEGG:cel:CELE_C04G2.6
UCSC:C04G2.6 CTD:177875 WormBase:C04G2.6 InParanoid:Q17632
NextBio:898756 Uniprot:Q17632
Length = 961
Score = 215 (80.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 40/52 (76%), Positives = 47/52 (90%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF++PGT +D+EAALR TTVYL D+RIDM+P LLS NLCSLR
Sbjct: 513 EVGVHIADVTHFVRPGTAIDDEAALRGTTVYLCDRRIDMLPCLLSSNLCSLR 564
>RGD|1304646 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISO]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0005085
"guanyl-nucleotide exchange factor activity" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0071034 "CUT catabolic process"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 RGD:1304646
GO:GO:0003723 GO:GO:0004540 SMART:SM00670 IPI:IPI00392641
PRIDE:D3ZAM5 Ensembl:ENSRNOT00000012182 UCSC:RGD:1304646
Uniprot:D3ZAM5
Length = 565
Score = 210 (79.0 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 500 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLR 551
>UNIPROTKB|E1BXX6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0071034 "CUT catabolic process" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AADN02042596
IPI:IPI00592352 RefSeq:XP_417016.2 ProteinModelPortal:E1BXX6
Ensembl:ENSGALT00000027368 GeneID:418821 KEGG:gga:418821
NextBio:20821959 Uniprot:E1BXX6
Length = 963
Score = 213 (80.0 bits), Expect = 4.0e-16, P = 4.0e-16
Identities = 42/52 (80%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LDEE+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 504 EVGVHIADVSHFIRPGNALDEESARRGTTVYLCEKRIDMVPELLSSNLCSLR 555
>UNIPROTKB|F1RHF7 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005654
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:MPWSITE GO:GO:0071034
EMBL:FP101966 Ensembl:ENSSSCT00000010370 Uniprot:F1RHF7
Length = 752
Score = 210 (79.0 bits), Expect = 5.8e-16, P = 5.8e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 295 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLR 346
>UNIPROTKB|F2Z2C0 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 SMART:SM00670 EMBL:AL391384
HGNC:HGNC:20604 ChiTaRS:DIS3 IPI:IPI00978109
ProteinModelPortal:F2Z2C0 SMR:F2Z2C0 PRIDE:F2Z2C0
Ensembl:ENST00000490646 ArrayExpress:F2Z2C0 Bgee:F2Z2C0
Uniprot:F2Z2C0
Length = 559
Score = 207 (77.9 bits), Expect = 7.1e-16, P = 7.1e-16
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSL+
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLK 552
>UNIPROTKB|E2RNY6 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 EMBL:AAEX03013240
RefSeq:XP_542610.3 Ensembl:ENSCAFT00000008080 GeneID:485491
KEGG:cfa:485491 NextBio:20859485 Uniprot:E2RNY6
Length = 958
Score = 210 (79.0 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLR 552
>MGI|MGI:1919912 [details] [associations]
symbol:Dis3 "DIS3 mitotic control homolog (S. cerevisiae)"
species:10090 "Mus musculus" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071034 "CUT catabolic process" evidence=ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 MGI:MGI:1919912
InterPro:IPR006596 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0003723 GO:GO:0005085 GO:GO:0004519 GO:GO:0016075
GO:GO:0006364 GO:GO:0000176 GO:GO:0000175 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 KO:K12585 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 CTD:22894 OrthoDB:EOG45B1DT
EMBL:AK012840 EMBL:AK032091 EMBL:AK129259 IPI:IPI00407764
RefSeq:NP_082591.2 UniGene:Mm.163339 ProteinModelPortal:Q9CSH3
SMR:Q9CSH3 STRING:Q9CSH3 PhosphoSite:Q9CSH3 PaxDb:Q9CSH3
PRIDE:Q9CSH3 Ensembl:ENSMUST00000042471 GeneID:72662 KEGG:mmu:72662
UCSC:uc007uuw.1 InParanoid:Q9CSH3 NextBio:336687 Bgee:Q9CSH3
CleanEx:MM_DIS3 Genevestigator:Q9CSH3 Uniprot:Q9CSH3
Length = 958
Score = 210 (79.0 bits), Expect = 8.3e-16, P = 8.3e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSLR
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLR 552
>DICTYBASE|DDB_G0293614 [details] [associations]
symbol:DDB_G0293614 "putative exoribonuclease"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0293614 InterPro:IPR006596 GO:GO:0003723
GO:GO:0004540 EMBL:AAFI02000218 GO:GO:0000176 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
SMART:SM00670 RefSeq:XP_629050.1 ProteinModelPortal:Q54BH9
STRING:Q54BH9 EnsemblProtists:DDB0234145 GeneID:8629340
KEGG:ddi:DDB_G0293614 InParanoid:Q54BH9 ProtClustDB:CLSZ2429248
Uniprot:Q54BH9
Length = 1006
Score = 210 (79.0 bits), Expect = 8.9e-16, P = 8.9e-16
Identities = 40/51 (78%), Positives = 47/51 (92%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVSHF++ GT +DEEAA R+T+VYLVD+RIDM+PG LSGNLCSL
Sbjct: 504 EVGVHIADVSHFVQEGTAIDEEAANRSTSVYLVDRRIDMLPGELSGNLCSL 554
>ZFIN|ZDB-GENE-080213-3 [details] [associations]
symbol:dis3 "DIS3 mitotic control homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
ZFIN:ZDB-GENE-080213-3 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 SMART:SM00670 CTD:22894 EMBL:BX571717 IPI:IPI00803594
RefSeq:XP_001336850.2 UniGene:Dr.51536 ProteinModelPortal:E7FE01
Ensembl:ENSDART00000085454 GeneID:100003553 KEGG:dre:100003553
NextBio:20785882 Bgee:E7FE01 Uniprot:E7FE01
Length = 950
Score = 209 (78.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 42/52 (80%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+EAA R TTVYL KRIDMVP LLS NLCSLR
Sbjct: 498 EVGVHIADVSHFIRPGNALDQEAANRGTTVYLCGKRIDMVPELLSSNLCSLR 549
>UNIPROTKB|G3V1J5 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0004540 EMBL:AL138695 InterPro:IPR022966 PROSITE:PS01175
EMBL:CH471093 EMBL:AL391384 UniGene:Hs.740506 HGNC:HGNC:20604
ChiTaRS:DIS3 ProteinModelPortal:G3V1J5 SMR:G3V1J5
Ensembl:ENST00000545453 ArrayExpress:G3V1J5 Bgee:G3V1J5
Uniprot:G3V1J5
Length = 796
Score = 207 (77.9 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSL+
Sbjct: 339 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLK 390
>CGD|CAL0003527 [details] [associations]
symbol:orf19.5229 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=IEA] [GO:0000049
"tRNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0071039 "nuclear polyadenylation-dependent CUT catabolic
process" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001900
InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
CGD:CAL0003527 InterPro:IPR006596 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 SMART:SM00670 EMBL:AACQ01000070
EMBL:AACQ01000071 RefSeq:XP_716298.1 RefSeq:XP_716360.1
ProteinModelPortal:Q5A3P1 SMR:Q5A3P1 STRING:Q5A3P1 GeneID:3641956
GeneID:3642063 KEGG:cal:CaO19.12694 KEGG:cal:CaO19.5229
Uniprot:Q5A3P1
Length = 1004
Score = 208 (78.3 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 39/52 (75%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF+KP TPLD+E A R T+VYLVDKRIDM+P LL NLCSL+
Sbjct: 569 EVGVHIADVTHFVKPNTPLDQEGASRGTSVYLVDKRIDMLPQLLGTNLCSLK 620
>UNIPROTKB|Q9Y2L1 [details] [associations]
symbol:DIS3 "Exosome complex exonuclease RRP44"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005085 "guanyl-nucleotide exchange factor activity"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0000178 "exosome (RNase complex)" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IMP]
[GO:0004519 "endonuclease activity" evidence=IMP] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071034 "CUT catabolic
process" evidence=IMP] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
InterPro:IPR006596 GO:GO:0005829 GO:GO:0005654 GO:GO:0003723
GO:GO:0005085 GO:GO:0004519 GO:GO:0016075 GO:GO:0006364
EMBL:AL138695 GO:GO:0000176 GO:GO:0000175 GO:GO:0043928
eggNOG:COG0557 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 OMA:MPWSITE SMART:SM00670 EMBL:CH471093
GO:GO:0071034 EMBL:AL391384 EMBL:AF330044 EMBL:AB023225
EMBL:AL832266 EMBL:AK314715 EMBL:AL080158 EMBL:BC056143
IPI:IPI00183462 IPI:IPI00746351 PIR:JE0110 RefSeq:NP_001121698.1
RefSeq:NP_055768.3 UniGene:Hs.740506 ProteinModelPortal:Q9Y2L1
SMR:Q9Y2L1 IntAct:Q9Y2L1 STRING:Q9Y2L1 PhosphoSite:Q9Y2L1
DMDM:73620993 SWISS-2DPAGE:Q9Y2L1 PaxDb:Q9Y2L1 PRIDE:Q9Y2L1
Ensembl:ENST00000377767 Ensembl:ENST00000377780 GeneID:22894
KEGG:hsa:22894 UCSC:uc001vix.4 UCSC:uc001viy.4 CTD:22894
GeneCards:GC13M073329 H-InvDB:HIX0011365 HGNC:HGNC:20604
HPA:HPA039281 MIM:607533 neXtProt:NX_Q9Y2L1 PharmGKB:PA162383628
InParanoid:Q9Y2L1 OrthoDB:EOG45B1DT PhylomeDB:Q9Y2L1 ChiTaRS:DIS3
GenomeRNAi:22894 NextBio:43511 ArrayExpress:Q9Y2L1 Bgee:Q9Y2L1
CleanEx:HS_DIS3 Genevestigator:Q9Y2L1 GermOnline:ENSG00000083520
Uniprot:Q9Y2L1
Length = 958
Score = 207 (77.9 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 40/52 (76%), Positives = 45/52 (86%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRIDMVP LLS NLCSL+
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLK 552
>POMBASE|SPBC26H8.10 [details] [associations]
symbol:dis3 "3'-5' exoribonuclease subunit Dis3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000465 "exonucleolytic
trimming to generate mature 5'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008536 "Ran GTPase binding" evidence=IPI] [GO:0032853
"positive regulation of Ran GTPase activity" evidence=IMP]
[GO:0034661 "ncRNA catabolic process" evidence=ISO] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001900 InterPro:IPR003029
Pfam:PF00773 PROSITE:PS50126 SMART:SM00955 PomBase:SPBC26H8.10
InterPro:IPR006596 GO:GO:0051301 GO:GO:0007067 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0040008 GO:GO:0004521
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 EMBL:M74094 PIR:A41944
RefSeq:NP_596653.1 ProteinModelPortal:P37202 SMR:P37202
STRING:P37202 PRIDE:P37202 EnsemblFungi:SPBC26H8.10.1
GeneID:2540398 KEGG:spo:SPBC26H8.10 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH BRENDA:3.1.13.1 NextBio:20801525 GO:GO:0000465
GO:GO:0032853 SMART:SM00670 Uniprot:P37202
Length = 970
Score = 201 (75.8 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF+KP T +D EAA R TTVYLVDKRIDM+P LL +LCSLR
Sbjct: 530 EVGVHIADVTHFVKPNTSMDSEAASRGTTVYLVDKRIDMLPMLLGTDLCSLR 581
>SGD|S000005381 [details] [associations]
symbol:DIS3 "Exosome core complex catalytic subunit"
species:4932 "Saccharomyces cerevisiae" [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=IC] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IDA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IMP;IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IMP]
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004521
"endoribonuclease activity" evidence=IMP;IDA] [GO:0000178 "exosome
(RNase complex)" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IMP] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IGI;IMP;IDA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0000049 "tRNA
binding" evidence=IDA;IMP] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=IC] [GO:0043628 "ncRNA
3'-end processing" evidence=IMP] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IC]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IC]
InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 SGD:S000005381 InterPro:IPR006596 GO:GO:0005739
GO:GO:0005730 EMBL:BK006948 GO:GO:0004521 GO:GO:0000049
GO:GO:0071039 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000175 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967
SMART:SM00316 GO:GO:0071051 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
KO:K12585 OMA:MPWSITE OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028
PDB:2WP8 PDBsum:2WP8 EMBL:D76430 EMBL:Z74763 PIR:S66704
RefSeq:NP_014621.1 PDB:2VNU PDBsum:2VNU ProteinModelPortal:Q08162
SMR:Q08162 DIP:DIP-2355N IntAct:Q08162 MINT:MINT-614156
STRING:Q08162 PaxDb:Q08162 PeptideAtlas:Q08162 EnsemblFungi:YOL021C
GeneID:854138 KEGG:sce:YOL021C CYGD:YOL021c
EvolutionaryTrace:Q08162 NextBio:975871 Genevestigator:Q08162
GermOnline:YOL021C Uniprot:Q08162
Length = 1001
Score = 198 (74.8 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADV+HF+KPGT LD E A R T+VYLVDKRIDM+P LL +LCSL+
Sbjct: 565 EVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCSLK 616
>UNIPROTKB|G4NDV8 [details] [associations]
symbol:MGG_00193 "Mitotic control protein dis3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001900 InterPro:IPR003029 Pfam:PF00773
PROSITE:PS50126 SMART:SM00955 InterPro:IPR006596 GO:GO:0005730
EMBL:CM001235 GO:GO:0004521 GO:GO:0000049 GO:GO:0071039
GO:GO:0071035 GO:GO:0071038 GO:GO:0000176 GO:GO:0000175
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 KO:K12585
SMART:SM00670 GO:GO:0071028 RefSeq:XP_003718924.1
ProteinModelPortal:G4NDV8 SMR:G4NDV8 EnsemblFungi:MGG_00193T0
GeneID:2674544 KEGG:mgr:MGG_00193 Uniprot:G4NDV8
Length = 990
Score = 196 (74.1 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHF+KP +D EA++R TTVYLVDKRIDM+P LL +LCSL+
Sbjct: 557 EVGVHIADVSHFVKPSNAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSLK 608
>ASPGD|ASPL0000011287 [details] [associations]
symbol:AN3657 species:162425 "Emericella nidulans"
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IEA] [GO:0071038
"nuclear polyadenylation-dependent tRNA catabolic process"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IEA]
[GO:0000049 "tRNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005730 EMBL:BN001302 EMBL:AACD01000061 GO:GO:0004521
GO:GO:0000049 GO:GO:0071039 GO:GO:0071035 GO:GO:0071038
GO:GO:0000467 GO:GO:0070651 eggNOG:COG0557 HOGENOM:HOG000191945
InterPro:IPR022966 PROSITE:PS01175 KO:K12585 OMA:MPWSITE
OrthoDB:EOG4VHPFH SMART:SM00670 GO:GO:0071028 RefSeq:XP_661261.1
ProteinModelPortal:Q5B723 SMR:Q5B723 STRING:Q5B723
EnsemblFungi:CADANIAT00005078 GeneID:2873078 KEGG:ani:AN3657.2
Uniprot:Q5B723
Length = 1015
Score = 194 (73.4 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
EVGVHIADVSHF+KP +D EA++R TTVYLVDKRIDM+P LL +LCSL+
Sbjct: 537 EVGVHIADVSHFVKPNNAMDLEASVRGTTVYLVDKRIDMLPHLLGTDLCSLK 588
>DICTYBASE|DDB_G0268186 [details] [associations]
symbol:DDB_G0268186 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0268186 EMBL:AAFI02000003
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 RefSeq:XP_647622.1 EnsemblProtists:DDB0189843
GeneID:8616436 KEGG:ddi:DDB_G0268186 InParanoid:Q55FB1 OMA:YMILANS
Uniprot:Q55FB1
Length = 1504
Score = 186 (70.5 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 34/52 (65%), Positives = 43/52 (82%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
E+GVHIADVSHF+K G+PLD EA R TT+YL D+R DM+P +LS ++CSLR
Sbjct: 743 EIGVHIADVSHFVKEGSPLDLEAKRRGTTIYLPDRRFDMLPAVLSEDVCSLR 794
>POMBASE|SPAC2C4.07c [details] [associations]
symbol:SPAC2C4.07c "ribonuclease II (RNB) family
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISM] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006401 "RNA catabolic process" evidence=ISM]
[GO:0033554 "cellular response to stress" evidence=IEP]
InterPro:IPR001900 Pfam:PF00773 PROSITE:PS50126 SMART:SM00955
PomBase:SPAC2C4.07c GO:GO:0005829 EMBL:CU329670 GO:GO:0033554
GO:GO:0003723 GO:GO:0006401 GO:GO:0004527 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 EMBL:AB027825
PIR:T38518 RefSeq:NP_594510.1 ProteinModelPortal:O14040
STRING:O14040 EnsemblFungi:SPAC2C4.07c.1 GeneID:2542643
KEGG:spo:SPAC2C4.07c OMA:WIISHEE OrthoDB:EOG4MGWGN NextBio:20803692
Uniprot:O14040
Length = 927
Score = 178 (67.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 36/51 (70%), Positives = 41/51 (80%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADV+HF+KP + LD+EAA RATTVYLV K I M+P LL LCSL
Sbjct: 475 EVGVHIADVTHFVKPDSALDKEAASRATTVYLVQKAIPMLPPLLCERLCSL 525
>DICTYBASE|DDB_G0278757 [details] [associations]
symbol:DDB_G0278757 "DIS3-like exonuclease 2"
species:44689 "Dictyostelium discoideum" [GO:0004540 "ribonuclease
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
dictyBase:DDB_G0278757 GO:GO:0003723 EMBL:AAFI02000024
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
RefSeq:XP_641919.1 ProteinModelPortal:Q54XT5
EnsemblProtists:DDB0206173 GeneID:8621677 KEGG:ddi:DDB_G0278757
InParanoid:Q54XT5 OMA:EICTIDP ProtClustDB:CLSZ2447996
Uniprot:Q54XT5
Length = 1343
Score = 175 (66.7 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 36/51 (70%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVSHF+KP T LD+ A +ATTVYLV K I M+P LLS LCSL
Sbjct: 864 EVGVHIADVSHFVKPDTALDKCAQRKATTVYLVQKAIPMLPSLLSEELCSL 914
>GENEDB_PFALCIPARUM|MAL13P1.289 [details] [associations]
symbol:MAL13P1.289 "mitotic control protein
dis3 homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0004527 "exonuclease activity" evidence=ISS] [GO:0000178
"exosome (RNase complex)" evidence=ISS] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966
PROSITE:PS01175 KO:K12585 RefSeq:XP_001350300.2
EnsemblProtists:MAL13P1.289:mRNA GeneID:813851 KEGG:pfa:MAL13P1.289
EuPathDB:PlasmoDB:PF3D7_1359300 HOGENOM:HOG000281701
ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 173 (66.0 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 31/50 (62%), Positives = 43/50 (86%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+GVHIADVS+F+K +P+D EA+ R TTVYL+++R+DM+P LL+ NLCSL
Sbjct: 637 IGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSL 686
>UNIPROTKB|Q8IDB6 [details] [associations]
symbol:MAL13P1.289 "Mitotic control protein dis3 homologue,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0004527 "exonuclease
activity" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0004527 GO:GO:0000178
GO:GO:0004540 EMBL:AL844509 InterPro:IPR022966 PROSITE:PS01175
KO:K12585 RefSeq:XP_001350300.2 EnsemblProtists:MAL13P1.289:mRNA
GeneID:813851 KEGG:pfa:MAL13P1.289 EuPathDB:PlasmoDB:PF3D7_1359300
HOGENOM:HOG000281701 ProtClustDB:CLSZ2515355 Uniprot:Q8IDB6
Length = 1073
Score = 173 (66.0 bits), Expect = 8.6e-12, P = 8.6e-12
Identities = 31/50 (62%), Positives = 43/50 (86%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+GVHIADVS+F+K +P+D EA+ R TTVYL+++R+DM+P LL+ NLCSL
Sbjct: 637 IGVHIADVSYFVKQNSPIDLEASKRCTTVYLINQRVDMLPKLLTTNLCSL 686
>UNIPROTKB|F1PK78 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AAEX03016225
Ensembl:ENSCAFT00000027369 Uniprot:F1PK78
Length = 1024
Score = 170 (64.9 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 469 ELGVHIADVTHFVPPSSYIDTEARTRATTYYLADRRYDMLPSILSADLCSL 519
>MGI|MGI:2143272 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:10090 "Mus musculus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 MGI:MGI:2143272 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
OrthoDB:EOG4229HZ InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
EMBL:AK173310 EMBL:AK029974 EMBL:BC056939 IPI:IPI00223964
IPI:IPI00881768 RefSeq:NP_001001295.2 RefSeq:NP_001171255.1
RefSeq:NP_766107.1 UniGene:Mm.268341 ProteinModelPortal:Q8C0S1
SMR:Q8C0S1 STRING:Q8C0S1 PhosphoSite:Q8C0S1 PaxDb:Q8C0S1
PRIDE:Q8C0S1 Ensembl:ENSMUST00000068367 Ensembl:ENSMUST00000113890
Ensembl:ENSMUST00000120760 Ensembl:ENSMUST00000168844 GeneID:213550
KEGG:mmu:213550 UCSC:uc009qbu.2 UCSC:uc009qbw.2
GeneTree:ENSGT00530000063106 InParanoid:Q8C0S1 NextBio:374039
Bgee:Q8C0S1 CleanEx:MM_DIS3L Genevestigator:Q8C0S1 Uniprot:Q8C0S1
Length = 1053
Score = 169 (64.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSL 550
>RGD|1308959 [details] [associations]
symbol:Dis3l "DIS3 mitotic control homolog (S. cerevisiae)-like"
species:10116 "Rattus norvegicus" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO;ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISO;ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0005886 "plasma
membrane" evidence=IEA;ISO] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0019899 "enzyme binding" evidence=IEA;ISO]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 RGD:1308959
GO:GO:0005886 GO:GO:0005813 GO:GO:0003723 GO:GO:0016075
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 OrthoDB:EOG4229HZ
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BC085932 IPI:IPI00366657 RefSeq:NP_001008381.1
UniGene:Rn.24884 ProteinModelPortal:Q5U2P0 STRING:Q5U2P0
PRIDE:Q5U2P0 Ensembl:ENSRNOT00000014071 GeneID:363077
KEGG:rno:363077 UCSC:RGD:1308959 InParanoid:Q5U2P0 NextBio:682358
Genevestigator:Q5U2P0 Uniprot:Q5U2P0
Length = 1054
Score = 169 (64.5 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDVEARTRATTYYLADRRYDMLPSILSADLCSL 550
>TIGR_CMR|BA_5334 [details] [associations]
symbol:BA_5334 "ribonuclease R" species:198094 "Bacillus
anthracis str. Ames" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
GO:GO:0016070 InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
HOGENOM:HOG000071119 RefSeq:NP_847510.1 RefSeq:YP_021992.2
RefSeq:YP_031196.1 ProteinModelPortal:Q81XA6 IntAct:Q81XA6
DNASU:1084838 EnsemblBacteria:EBBACT00000009754
EnsemblBacteria:EBBACT00000016672 EnsemblBacteria:EBBACT00000021451
GeneID:1084838 GeneID:2818515 GeneID:2848989 KEGG:ban:BA_5334
KEGG:bar:GBAA_5334 KEGG:bat:BAS4956 ProtClustDB:CLSK873641
BioCyc:BANT260799:GJAJ-5031-MONOMER
BioCyc:BANT261594:GJ7F-5204-MONOMER Uniprot:Q81XA6
Length = 808
Score = 166 (63.5 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 31/51 (60%), Positives = 42/51 (82%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
++GVHIADVSH+++ G+P+D EAA RAT+VYLVD+ I M+P LS +CSL
Sbjct: 286 KLGVHIADVSHYVQEGSPIDVEAAERATSVYLVDRVIPMIPHRLSNGICSL 336
>UNIPROTKB|Q8TF46 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IMP;IDA] [GO:0016075
"rRNA catabolic process" evidence=IMP;IDA] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0005886
GO:GO:0005813 GO:GO:0003723 GO:GO:0016075 EMBL:CH471082
GO:GO:0000175 GO:GO:0000177 CTD:115752 eggNOG:COG0557
HOGENOM:HOG000191945 HOVERGEN:HBG059397 InterPro:IPR022966
PROSITE:PS01175 EMBL:AB075835 EMBL:AK095407 EMBL:AC055855
EMBL:BC014124 EMBL:BC022089 IPI:IPI00291003 IPI:IPI00295876
IPI:IPI00879677 IPI:IPI00879828 RefSeq:NP_001137160.1
RefSeq:NP_588616.1 UniGene:Hs.446251 ProteinModelPortal:Q8TF46
SMR:Q8TF46 IntAct:Q8TF46 STRING:Q8TF46 PhosphoSite:Q8TF46
DMDM:166201903 PaxDb:Q8TF46 PeptideAtlas:Q8TF46 PRIDE:Q8TF46
DNASU:115752 Ensembl:ENST00000319194 Ensembl:ENST00000319212
GeneID:115752 KEGG:hsa:115752 UCSC:uc002app.3 UCSC:uc002apq.2
GeneCards:GC15P066585 HGNC:HGNC:28698 HPA:HPA041805 MIM:614183
neXtProt:NX_Q8TF46 PharmGKB:PA162383675 InParanoid:Q8TF46
OMA:IPRFGIK ChiTaRS:DIS3L GenomeRNAi:115752 NextBio:79674
ArrayExpress:Q8TF46 Bgee:Q8TF46 CleanEx:HS_DIS3L
Genevestigator:Q8TF46 Uniprot:Q8TF46
Length = 1054
Score = 167 (63.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSL 550
>UNIPROTKB|Q5R5N8 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9601 "Pongo
abelii" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 GO:GO:0003723
GO:GO:0000175 GO:GO:0000177 CTD:115752 HOGENOM:HOG000191945
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:CR860819
RefSeq:NP_001126723.1 UniGene:Pab.8044 ProteinModelPortal:Q5R5N8
GeneID:100173724 KEGG:pon:100173724 Uniprot:Q5R5N8
Length = 1054
Score = 167 (63.8 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 500 ELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLSADLCSL 550
>UNIPROTKB|F1N1R4 [details] [associations]
symbol:DIS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071034 "CUT catabolic process" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005085 "guanyl-nucleotide exchange
factor activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0005654 GO:GO:0003723 GO:GO:0005085 GO:GO:0004519
GO:GO:0016075 GO:GO:0000176 GO:GO:0000175 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 OMA:MPWSITE
SMART:SM00670 GO:GO:0071034 EMBL:DAAA02033486 EMBL:DAAA02033485
IPI:IPI01017508 Ensembl:ENSBTAT00000026500 Uniprot:F1N1R4
Length = 951
Score = 164 (62.8 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 33/50 (66%), Positives = 38/50 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCS 79
EVGVHIADVSHFI+PG LD+E+A R TTVYL +KRID L+ GN S
Sbjct: 501 EVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDXFTELVVGNKAS 550
>UNIPROTKB|Q0P4R5 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISS] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InterPro:IPR022966 PROSITE:PS01175 EMBL:BC121935
RefSeq:NP_001072835.1 UniGene:Str.52789 ProteinModelPortal:Q0P4R5
STRING:Q0P4R5 GeneID:780296 KEGG:xtr:780296 Xenbase:XB-GENE-1013178
Uniprot:Q0P4R5
Length = 1039
Score = 164 (62.8 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P T D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 493 ELGVHIADVTHFVPPNTYTDIEARSRATTYYLADRRYDMLPLILSADLCSL 543
>ZFIN|ZDB-GENE-070209-95 [details] [associations]
symbol:dis3l "DIS3 mitotic control homolog (S.
cerevisiae)-like" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004540 "ribonuclease activity"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070209-95 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CABZ01003662 IPI:IPI00493157
ProteinModelPortal:F1Q9I9 Ensembl:ENSDART00000075176 Bgee:F1Q9I9
Uniprot:F1Q9I9
Length = 1057
Score = 164 (62.8 bits), Expect = 7.7e-11, P = 7.7e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF++ G+ D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 495 ELGVHIADVTHFVREGSLTDLEARSRATTYYLADRRYDMLPAVLSADLCSL 545
>UNIPROTKB|A0JN80 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0000175
GO:GO:0000177 EMBL:BC126555 IPI:IPI00701147 RefSeq:NP_001071624.1
UniGene:Bt.10856 ProteinModelPortal:A0JN80 STRING:A0JN80
PRIDE:A0JN80 GeneID:777771 KEGG:bta:777771 CTD:115752
eggNOG:COG0557 HOGENOM:HOG000191945 HOVERGEN:HBG059397
InParanoid:A0JN80 OrthoDB:EOG4229HZ NextBio:20924325
InterPro:IPR022966 PROSITE:PS01175 Uniprot:A0JN80
Length = 1053
Score = 163 (62.4 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 500 ELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSL 550
>UNIPROTKB|F1MEA6 [details] [associations]
symbol:DIS3L "DIS3-like exonuclease 1" species:9913 "Bos
taurus" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
IPI:IPI00701147 InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:DAAA02027893
Ensembl:ENSBTAT00000000481 Uniprot:F1MEA6
Length = 1053
Score = 163 (62.4 bits), Expect = 9.8e-11, P = 9.8e-11
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 500 ELGVHIADVTHFVAPHSYIDIEARTRATTYYLADRRYDMLPAILSADVCSL 550
>FB|FBgn0039183 [details] [associations]
symbol:Dis3 "Dis3" species:7227 "Drosophila melanogaster"
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005652 "nuclear lamina" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0071027 "nuclear RNA
surveillance" evidence=IMP] [GO:0010468 "regulation of gene
expression" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 InterPro:IPR006596
GO:GO:0022008 GO:GO:0003723 GO:GO:0004540 GO:GO:0010468
GO:GO:0005652 GO:GO:0000176 InterPro:IPR022966 PROSITE:PS01175
SMART:SM00670 GO:GO:0071027 FlyBase:FBgn0039183 EMBL:AJ276897
ProteinModelPortal:Q9BI20 STRING:Q9BI20 PRIDE:Q9BI20
InParanoid:Q9BI20 ArrayExpress:Q9BI20 Bgee:Q9BI20 Uniprot:Q9BI20
Length = 983
Score = 162 (62.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 36/52 (69%), Positives = 38/52 (73%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRA-TTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVSHFI+PG + TTVYLV KRIDMVP LLS NLCSL
Sbjct: 508 EVGVHIADVSHFIRPGKRTGHGGSGPGETTVYLVGKRIDMVPELLSSNLCSL 559
>UNIPROTKB|E2QZ40 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
Ensembl:ENSCAFT00000017770 Uniprot:E2QZ40
Length = 870
Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+PLD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 403 EVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 453
>UNIPROTKB|F1SJJ9 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:CU062652 Ensembl:ENSSSCT00000005453 Uniprot:F1SJJ9
Length = 1057
Score = 162 (62.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 503 ELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSL 553
>UNIPROTKB|I3LEH1 [details] [associations]
symbol:DIS3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019899 "enzyme binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005813 "centrosome" evidence=IEA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:CU062652
Ensembl:ENSSSCT00000024119 Uniprot:I3LEH1
Length = 1059
Score = 162 (62.1 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF+ P + +D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 505 ELGVHIADVTHFVAPHSYIDIEARSRATTYYLADRRYDMLPSILSADVCSL 555
>UNIPROTKB|F6XKS7 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
CTD:129563 OMA:VQKRVYC EMBL:AAEX03014445 Ensembl:ENSCAFT00000017770
EMBL:AAEX03014441 EMBL:AAEX03014442 EMBL:AAEX03014443
EMBL:AAEX03014444 RefSeq:XP_852722.1 ProteinModelPortal:F6XKS7
GeneID:610194 KEGG:cfa:610194 Uniprot:F6XKS7
Length = 879
Score = 161 (61.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+PLD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 403 EVGVHIADVSYFVPEGSPLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 453
>ZFIN|ZDB-GENE-070705-171 [details] [associations]
symbol:si:ch211-273k1.4 "si:ch211-273k1.4"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
ZFIN:ZDB-GENE-070705-171 GO:GO:0003723 GO:GO:0004540
InterPro:IPR022966 PROSITE:PS01175 GeneTree:ENSGT00530000063106
EMBL:BX001029 IPI:IPI00499069 Ensembl:ENSDART00000083272
Uniprot:E7F350
Length = 995
Score = 159 (61.0 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/51 (66%), Positives = 38/51 (74%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+K G LDE A RAT+VYLV K I M+P LL LCSL
Sbjct: 535 EVGVHIADVSYFVKEGNALDELAGQRATSVYLVQKVIPMLPRLLCEELCSL 585
>UNIPROTKB|H7C440 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0003723 EMBL:AC013435
GO:GO:0004540 InterPro:IPR022966 PROSITE:PS01175 EMBL:AC019130
EMBL:AC068134 EMBL:AC093374 EMBL:AC138658 HGNC:HGNC:28648
ChiTaRS:DIS3L2 EMBL:AC105461 ProteinModelPortal:H7C440
Ensembl:ENST00000424049 Bgee:H7C440 Uniprot:H7C440
Length = 383
Score = 149 (57.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+VGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 40 KVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 90
>UNIPROTKB|Q6GN11 [details] [associations]
symbol:dis3l "DIS3-like exonuclease 1" species:8355
"Xenopus laevis" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0000175 GO:GO:0000177 CTD:115752
HOVERGEN:HBG059397 InterPro:IPR022966 PROSITE:PS01175 EMBL:BC073711
RefSeq:NP_001086021.1 UniGene:Xl.3437 ProteinModelPortal:Q6GN11
GeneID:444450 KEGG:xla:444450 Xenbase:XB-GENE-1013183
Uniprot:Q6GN11
Length = 1040
Score = 155 (59.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+HF++ T D EA RATT YL D+R DM+P +LS +LCSL
Sbjct: 494 ELGVHIADVTHFVQHNTYTDIEARSRATTYYLADRRNDMLPLILSADLCSL 544
>MGI|MGI:2442555 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S.
cerevisiae)-like 2" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0007067 "mitosis" evidence=ISO] [GO:0008285 "negative
regulation of cell proliferation" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0051306 "mitotic sister chromatid separation"
evidence=ISO] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
MGI:MGI:2442555 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 GO:GO:0051306
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 HOVERGEN:HBG107810
EMBL:AK031180 EMBL:BC036177 IPI:IPI00229771 IPI:IPI00881442
RefSeq:NP_001165628.1 RefSeq:NP_705758.1 UniGene:Mm.389152
ProteinModelPortal:Q8CI75 SMR:Q8CI75 STRING:Q8CI75
PhosphoSite:Q8CI75 PaxDb:Q8CI75 PRIDE:Q8CI75
Ensembl:ENSMUST00000065694 Ensembl:ENSMUST00000168237 GeneID:208718
KEGG:mmu:208718 UCSC:uc007bvu.2 UCSC:uc007bvv.2
HOGENOM:HOG000017705 InParanoid:Q8CI75 OMA:VQKRVYC
OrthoDB:EOG415GCR NextBio:372395 Bgee:Q8CI75 Genevestigator:Q8CI75
Uniprot:Q8CI75
Length = 870
Score = 153 (58.9 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 403 EVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 453
>UNIPROTKB|E1B7R0 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051306 "mitotic sister chromatid separation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 CTD:129563 OMA:VQKRVYC
EMBL:DAAA02006206 EMBL:DAAA02006207 EMBL:DAAA02006208
IPI:IPI00693579 RefSeq:NP_001179435.1 UniGene:Bt.54653
ProteinModelPortal:E1B7R0 Ensembl:ENSBTAT00000038112 GeneID:519222
KEGG:bta:519222 NextBio:20872834 Uniprot:E1B7R0
Length = 882
Score = 153 (58.9 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 405 EVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 455
>RGD|1560168 [details] [associations]
symbol:Dis3l2 "DIS3 mitotic control homolog (S. cerevisiae)-like
2" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0007067 "mitosis"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0051306 "mitotic sister chromatid
separation" evidence=ISO] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 RGD:1560168 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
OrthoDB:EOG415GCR IPI:IPI00950040 Ensembl:ENSRNOT00000066216
UCSC:RGD:1560168 ArrayExpress:D3ZWJ4 Uniprot:D3ZWJ4
Length = 884
Score = 153 (58.9 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 417 EVGVHIADVSYFVPEGSSLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 467
>UNIPROTKB|Q8IYB7 [details] [associations]
symbol:DIS3L2 "DIS3-like exonuclease 2" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0004540 "ribonuclease activity" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0051306 "mitotic sister
chromatid separation" evidence=IMP] [GO:0008285 "negative
regulation of cell proliferation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0051301
GO:GO:0003723 GO:GO:0004527 GO:GO:0004540 Orphanet:654
GO:GO:0051306 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
EMBL:AK094293 EMBL:AL834174 EMBL:BX648325 EMBL:AF443854
EMBL:AC019130 EMBL:AC068134 EMBL:AC093374 EMBL:AC138658
EMBL:BC026166 EMBL:BC036113 IPI:IPI00167753 IPI:IPI00217752
IPI:IPI00385160 IPI:IPI00465384 IPI:IPI00880048
RefSeq:NP_001244210.1 RefSeq:NP_001244211.1 RefSeq:NP_689596.4
UniGene:Hs.732236 ProteinModelPortal:Q8IYB7 IntAct:Q8IYB7
MINT:MINT-1386910 STRING:Q8IYB7 PhosphoSite:Q8IYB7 DMDM:296439471
PaxDb:Q8IYB7 PRIDE:Q8IYB7 DNASU:129563 Ensembl:ENST00000273009
Ensembl:ENST00000325385 Ensembl:ENST00000360410
Ensembl:ENST00000390005 Ensembl:ENST00000409307
Ensembl:ENST00000409401 Ensembl:ENST00000433430
Ensembl:ENST00000445090 GeneID:129563 KEGG:hsa:129563
UCSC:uc010fxz.3 CTD:129563 GeneCards:GC02P232825 H-InvDB:HIX0002923
HGNC:HGNC:28648 HPA:HPA035797 MIM:267000 MIM:614184
neXtProt:NX_Q8IYB7 Orphanet:2849 PharmGKB:PA162383714
HOVERGEN:HBG107810 InParanoid:Q8IYB7 OMA:HIYEYRE ChiTaRS:DIS3L2
GenomeRNAi:129563 NextBio:82609 ArrayExpress:Q8IYB7 Bgee:Q8IYB7
CleanEx:HS_DIS3L2 Genevestigator:Q8IYB7 Uniprot:Q8IYB7
Length = 885
Score = 149 (57.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+VGVHIADVS+F+ G+ LD+ AA RAT+VYLV K + M+P LL LCSL
Sbjct: 405 KVGVHIADVSYFVPEGSDLDKVAAERATSVYLVQKVVPMLPRLLCEELCSL 455
>TAIR|locus:2203231 [details] [associations]
symbol:AT1G77680 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004540
"ribonuclease activity" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0004540
eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175 OMA:HIYEYRE
EMBL:AK229034 IPI:IPI00531584 RefSeq:NP_177891.1 UniGene:At.22476
ProteinModelPortal:Q0WPN0 STRING:Q0WPN0 PaxDb:Q0WPN0 PRIDE:Q0WPN0
EnsemblPlants:AT1G77680.1 GeneID:844104 KEGG:ath:AT1G77680
TAIR:At1g77680 HOGENOM:HOG000030596 InParanoid:Q0WPN0
PhylomeDB:Q0WPN0 ProtClustDB:CLSN2682125 Genevestigator:Q0WPN0
Uniprot:Q0WPN0
Length = 1055
Score = 148 (57.2 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/50 (60%), Positives = 39/50 (78%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
VGVHIADVS+F+ P T LD EA R+T+VYL+ ++I M+P LLS N+ SL
Sbjct: 511 VGVHIADVSYFVLPETALDTEARFRSTSVYLMQRKISMLPPLLSENVGSL 560
>UNIPROTKB|F1NKN5 [details] [associations]
symbol:LOC100857630 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IEA] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 GO:GO:0005886 GO:GO:0005813
GO:GO:0003723 GO:GO:0016075 GO:GO:0000175 GO:GO:0000177
InterPro:IPR022966 PROSITE:PS01175 OMA:IPRFGIK
GeneTree:ENSGT00530000063106 EMBL:AADN02038918 EMBL:AADN02038919
EMBL:AADN02038920 IPI:IPI00571818 Ensembl:ENSGALT00000012364
Uniprot:F1NKN5
Length = 1082
Score = 148 (57.2 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV++F+ + D EA RATT YL D+R DM+P +LS ++CSL
Sbjct: 525 ELGVHIADVTYFVAANSYTDIEARARATTYYLADRRYDMLPSVLSADICSL 575
>UNIPROTKB|E1C372 [details] [associations]
symbol:DIS3L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0051306 "mitotic sister chromatid
separation" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 GO:GO:0005737 GO:GO:0008285 GO:GO:0003723
GO:GO:0004540 GO:GO:0051306 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:VQKRVYC EMBL:AADN02020657
EMBL:AADN02020658 EMBL:AADN02020659 EMBL:AADN02020660
EMBL:AADN02020661 EMBL:AADN02020662 EMBL:AADN02020663
IPI:IPI00578279 Ensembl:ENSGALT00000012599 Uniprot:E1C372
Length = 875
Score = 145 (56.1 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 32/51 (62%), Positives = 37/51 (72%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHIADVS+F+ T LD A+ RAT+VYLV K I M+P LL LCSL
Sbjct: 408 EVGVHIADVSYFVLEETALDRVASERATSVYLVQKVIPMLPKLLCEELCSL 458
>TIGR_CMR|GSU_1485 [details] [associations]
symbol:GSU_1485 "ribonuclease R, putative" species:243231
"Geobacter sulfurreducens PCA" [GO:0008997 "ribonuclease R
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573
OMA:FGFLIPD TIGRFAMs:TIGR02063 HOGENOM:HOG000071119
RefSeq:NP_952536.1 ProteinModelPortal:Q74D34 GeneID:2686169
KEGG:gsu:GSU1485 PATRIC:22025817 ProtClustDB:CLSK828384
BioCyc:GSUL243231:GH27-1468-MONOMER Uniprot:Q74D34
Length = 763
Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVSH++KPG+ LD EA LR T+VY D+ I M+P LS +CSL
Sbjct: 280 VSIADVSHYVKPGSALDREAYLRGTSVYFPDRCIPMLPEELSNGICSL 327
>ASPGD|ASPL0000054659 [details] [associations]
symbol:AN1158 species:162425 "Emericella nidulans"
[GO:0004540 "ribonuclease activity" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005935
"cellular bud neck" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0032153 "cell division site"
evidence=IEA] [GO:0000900 "translation repressor activity, nucleic
acid binding" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0060237 "regulation of fungal-type cell wall
organization" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0034613 "cellular protein
localization" evidence=IEA] [GO:2000115 "regulation of maintenance
of bipolar cell polarity regulating cell shape" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 EMBL:AACD01000016
EMBL:BN001308 GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557
OrthoDB:EOG4MGWGN HOGENOM:HOG000207194 OMA:DIFICGS
RefSeq:XP_658762.1 ProteinModelPortal:Q5BE72 STRING:Q5BE72
EnsemblFungi:CADANIAT00001468 GeneID:2876936 KEGG:ani:AN1158.2
Uniprot:Q5BE72
Length = 1374
Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+G+H+ D++HF+KP + +D EA R T VYLVD+ + M+P ++ LC+L
Sbjct: 790 EIGIHVTDIAHFVKPNSLVDREAKKRGTAVYLVDRLVKMLPPRIATELCAL 840
>TIGR_CMR|CHY_0289 [details] [associations]
symbol:CHY_0289 "ribonuclease R" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006401 "RNA
catabolic process" evidence=ISS] [GO:0008997 "ribonuclease R
activity" evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003723 GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_359161.1 ProteinModelPortal:Q3AFC3 STRING:Q3AFC3
GeneID:3727430 KEGG:chy:CHY_0289 PATRIC:21273751
HOGENOM:HOG000071119 BioCyc:CHYD246194:GJCN-290-MONOMER
Uniprot:Q3AFC3
Length = 724
Score = 137 (53.3 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
++GVHIADVS++++ G+ LD+EA R T+VYL K + M+P LS +CSL
Sbjct: 277 QLGVHIADVSYYVREGSALDKEALERGTSVYLAGKVLPMLPPELSNGICSL 327
>DICTYBASE|DDB_G0285435 [details] [associations]
symbol:DDB_G0285435 species:44689 "Dictyostelium
discoideum" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001900
Pfam:PF00773 SMART:SM00955 dictyBase:DDB_G0285435 EMBL:AAFI02000079
GO:GO:0003723 GO:GO:0004540 eggNOG:COG0557 RefSeq:XP_638051.1
ProteinModelPortal:Q54N92 EnsemblProtists:DDB0186491 GeneID:8625097
KEGG:ddi:DDB_G0285435 InParanoid:Q54N92 OMA:RYNDISW Uniprot:Q54N92
Length = 1642
Score = 134 (52.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
E+G+HI+DVS F++ G+ LD+EA R T+YL+ I M+P LS + CSL+
Sbjct: 1024 EIGIHISDVSAFLEKGSKLDKEAEYRLNTIYLIGSIIPMLPKNLSSSTCSLK 1075
>UNIPROTKB|P21499 [details] [associations]
symbol:rnr species:83333 "Escherichia coli K-12"
[GO:0004540 "ribonuclease activity" evidence=IMP] [GO:0016896
"exoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IDA] [GO:0008997 "ribonuclease R activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0034458 "3'-5' RNA helicase
activity" evidence=IDA] [GO:0034470 "ncRNA processing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0006402 "mRNA catabolic process" evidence=IMP] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006950
"response to stress" evidence=IEA;IEP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0009405 "pathogenesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=IDA] HAMAP:MF_01895 InterPro:IPR001900
InterPro:IPR003029 InterPro:IPR004476 InterPro:IPR011129
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00357 SMART:SM00955 GO:GO:0005737 GO:GO:0009405
GO:GO:0006950 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0016556 GO:GO:0003723 EMBL:U14003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966
PROSITE:PS01175 GO:GO:0000154 GO:GO:0008859 EMBL:J04199
InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358 PIR:S56404
RefSeq:NP_418600.4 RefSeq:YP_492321.1 ProteinModelPortal:P21499
SMR:P21499 DIP:DIP-10733N IntAct:P21499 PRIDE:P21499
EnsemblBacteria:EBESCT00000001517 EnsemblBacteria:EBESCT00000016566
GeneID:12932898 GeneID:948692 KEGG:ecj:Y75_p4065 KEGG:eco:b4179
PATRIC:32123931 EchoBASE:EB1239 EcoGene:EG11259
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD ProtClustDB:PRK11642
BioCyc:EcoCyc:EG11259-MONOMER BioCyc:ECOL316407:JW5741-MONOMER
BioCyc:MetaCyc:EG11259-MONOMER Genevestigator:P21499 GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 Uniprot:P21499
Length = 813
Score = 130 (50.8 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVS++++P TPLD EA R T+VY + I M+P +LS LCSL
Sbjct: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSL 344
>WB|WBGene00018612 [details] [associations]
symbol:F48E8.6 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004540 "ribonuclease
activity" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:FO081421 GO:GO:0003723 GO:GO:0090305
GO:GO:0004540 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GeneTree:ENSGT00530000063106 OMA:HIYEYRE HOGENOM:HOG000017705
PIR:T16409 RefSeq:NP_498160.2 ProteinModelPortal:Q09568 SMR:Q09568
STRING:Q09568 PaxDb:Q09568 EnsemblMetazoa:F48E8.6 GeneID:175748
KEGG:cel:CELE_F48E8.6 UCSC:F48E8.6 CTD:175748 WormBase:F48E8.6
InParanoid:Q09568 NextBio:889474 Uniprot:Q09568
Length = 848
Score = 125 (49.1 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHIADV+ F+K GT LD+ A+ R + YL I M+P +L LCSL
Sbjct: 373 EIGVHIADVTFFLKEGTELDKWASERGNSTYLSQTVIPMLPRILCEQLCSL 423
>TIGR_CMR|CBU_1091 [details] [associations]
symbol:CBU_1091 "ribonuclease R" species:227377 "Coxiella
burnetii RSA 493" [GO:0008997 "ribonuclease R activity"
evidence=ISS] HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206
TIGRFAMs:TIGR00358 HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD
TIGRFAMs:TIGR02063 RefSeq:NP_820090.2 ProteinModelPortal:Q83CM3
PRIDE:Q83CM3 GeneID:1208992 KEGG:cbu:CBU_1091 PATRIC:17930913
ProtClustDB:CLSK914532 BioCyc:CBUR227377:GJ7S-1084-MONOMER
Uniprot:Q83CM3
Length = 749
Score = 118 (46.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 25/48 (52%), Positives = 31/48 (64%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVSH++ + LD+E LR +VY K I M+P LS NLCSL
Sbjct: 313 VAIADVSHYVSRESALDKEGQLRGNSVYFPSKVIPMLPEALSNNLCSL 360
>GENEDB_PFALCIPARUM|PFF0745c [details] [associations]
symbol:PFF0745c "ribonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0006396 "RNA processing"
evidence=ISS] InterPro:IPR001900 Pfam:PF00773 SMART:SM00955
GO:GO:0003723 GO:GO:0004540 EMBL:AL844505 InterPro:IPR022966
PROSITE:PS01175 InterPro:IPR013223 Pfam:PF08206 RefSeq:XP_966140.2
EnsemblProtists:PFF0745c:mRNA GeneID:3885866 KEGG:pfa:PFF0745c
EuPathDB:PlasmoDB:PF3D7_0615400 Uniprot:C6KSZ5
Length = 2733
Score = 122 (48.0 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 27/51 (52%), Positives = 32/51 (62%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
EVGVHI DVS FIK + LD +A RA T+YL M+ +LS LCSL
Sbjct: 1984 EVGVHITDVSFFIKENSSLDIDARNRAMTIYLTHTCFPMISKILSEELCSL 2034
>UNIPROTKB|Q9KNY1 [details] [associations]
symbol:rnr "Ribonuclease R" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 116 (45.9 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVS++++P T LD+EA R +VY + + M+P +LS LCSL
Sbjct: 304 VAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSL 351
>TIGR_CMR|VC_2599 [details] [associations]
symbol:VC_2599 "ribonuclease R" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0006396 "RNA processing"
evidence=ISS] [GO:0008997 "ribonuclease R activity" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003723 GO:GO:0006396 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0557
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 InterPro:IPR013223
Pfam:PF08206 TIGRFAMs:TIGR00358 KO:K12573 OMA:FGFLIPD GO:GO:0008997
InterPro:IPR013668 Pfam:PF08461 TIGRFAMs:TIGR02063 PIR:C82055
RefSeq:NP_232227.1 ProteinModelPortal:Q9KNY1 DNASU:2615616
GeneID:2615616 KEGG:vch:VC2599 PATRIC:20084224
ProtClustDB:CLSK874852 Uniprot:Q9KNY1
Length = 821
Score = 116 (45.9 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVS++++P T LD+EA R +VY + + M+P +LS LCSL
Sbjct: 304 VAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSL 351
>TIGR_CMR|SPO_3330 [details] [associations]
symbol:SPO_3330 "ribonuclease R" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0006401 "RNA catabolic process" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126
SMART:SM00955 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003723 GO:GO:0090305 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967 SMART:SM00316
InterPro:IPR022966 PROSITE:PS01175 GO:GO:0008859 TIGRFAMs:TIGR00358
KO:K12573 TIGRFAMs:TIGR02063 RefSeq:YP_168526.1
ProteinModelPortal:Q5LN82 GeneID:3193934 KEGG:sil:SPO3330
PATRIC:23380111 HOGENOM:HOG000071121 OMA:NLRRYAH
ProtClustDB:CLSK934129 Uniprot:Q5LN82
Length = 752
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
+ V IADV+ +++ G+ LD EA R + Y D+ + M+P LSG+LCSL
Sbjct: 288 IWVAIADVAAYVRAGSALDREARKRGNSTYFPDRVVPMLPDRLSGDLCSL 337
>TIGR_CMR|CPS_4617 [details] [associations]
symbol:CPS_4617 "ribonuclease R" species:167879 "Colwellia
psychrerythraea 34H" [GO:0008997 "ribonuclease R activity"
evidence=ISS] [GO:0016075 "rRNA catabolic process" evidence=ISS]
HAMAP:MF_01895 InterPro:IPR001900 InterPro:IPR003029
InterPro:IPR004476 InterPro:IPR011129 InterPro:IPR011805
Pfam:PF00575 Pfam:PF00773 PROSITE:PS50126 SMART:SM00357
SMART:SM00955 GO:GO:0005737 GO:GO:0003723 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0090305 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070 InterPro:IPR022967
SMART:SM00316 eggNOG:COG0557 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD TIGRFAMs:TIGR02063
RefSeq:YP_271264.1 ProteinModelPortal:Q47VA8 STRING:Q47VA8
GeneID:3520956 KEGG:cps:CPS_4617 PATRIC:21472057
BioCyc:CPSY167879:GI48-4626-MONOMER Uniprot:Q47VA8
Length = 826
Score = 113 (44.8 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVS++++ GT LD+EA R +VY + I M+P LS LCSL
Sbjct: 305 VAIADVSYYVQHGTALDDEAISRGNSVYFPSQVIPMLPEKLSNGLCSL 352
>CGD|CAL0003016 [details] [associations]
symbol:SSD1 species:5476 "Candida albicans" [GO:0020012
"evasion or tolerance of host immune response" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005935 "cellular bud neck"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0032153 "cell division site" evidence=IEA]
[GO:0060237 "regulation of fungal-type cell wall organization"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IEA] [GO:0000900
"translation repressor activity, nucleic acid binding"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 CGD:CAL0003016
GO:GO:0009405 GO:GO:0003723 GO:GO:0004540 EMBL:AACQ01000012
GO:GO:0020012 RefSeq:XP_721868.1 ProteinModelPortal:Q5AK62
STRING:Q5AK62 GeneID:3636520 KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 108 (43.1 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 17/41 (41%), Positives = 32/41 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVP 70
E+G H+AD+++FIKPG+ LD ++ R+++V+L K +++ P
Sbjct: 704 ELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFP 744
>UNIPROTKB|Q5AK62 [details] [associations]
symbol:SSD1 "Putative uncharacterized protein SSD1"
species:237561 "Candida albicans SC5314" [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0020012 "evasion or tolerance of host immune
response" evidence=IMP] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 CGD:CAL0003016 GO:GO:0009405 GO:GO:0003723
GO:GO:0004540 EMBL:AACQ01000012 GO:GO:0020012 RefSeq:XP_721868.1
ProteinModelPortal:Q5AK62 STRING:Q5AK62 GeneID:3636520
KEGG:cal:CaO19.3959 Uniprot:Q5AK62
Length = 1274
Score = 108 (43.1 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 17/41 (41%), Positives = 32/41 (78%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVP 70
E+G H+AD+++FIKPG+ LD ++ R+++V+L K +++ P
Sbjct: 704 ELGFHVADIAYFIKPGSSLDRKSKKRSSSVFLPQKTVNLFP 744
>POMBASE|SPCC16C4.09 [details] [associations]
symbol:sts5 "RNB-like protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004540
"ribonuclease activity" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006401 "RNA
catabolic process" evidence=ISM] [GO:0032153 "cell division site"
evidence=IDA] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:2000115 "regulation of maintenance of bipolar
cell polarity regulating cell shape" evidence=IMP]
InterPro:IPR001900 Pfam:PF00773 SMART:SM00955 PomBase:SPCC16C4.09
GO:GO:0005829 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0032153 GO:GO:0003723 GO:GO:0006401 GO:GO:0007049
GO:GO:0004527 GO:GO:0004540 eggNOG:COG0557 PROSITE:PS01175
OrthoDB:EOG4MGWGN EMBL:D58421 PIR:T41099 PIR:T45283
RefSeq:NP_587919.1 ProteinModelPortal:O74454 STRING:O74454
EnsemblFungi:SPCC16C4.09.1 GeneID:2539180 KEGG:spo:SPCC16C4.09
OMA:HESNINS NextBio:20800351 GO:GO:2000115 Uniprot:O74454
Length = 1066
Score = 107 (42.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 31 VGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
VG+H+ DVS I+PG+PLD E R+ V L K + + P L G SLR
Sbjct: 643 VGIHVTDVSRVIEPGSPLDRELQRRSIAVNLCQKSVPLFPTTL-GEALSLR 692
>FB|FBgn0035111 [details] [associations]
symbol:CG16940 species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS]
[GO:0008859 "exoribonuclease II activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001900 Pfam:PF00773
SMART:SM00955 EMBL:AE014296 GO:GO:0003723 InterPro:IPR022966
PROSITE:PS01175 GeneTree:ENSGT00530000063106 GO:GO:0008859
EMBL:BT044564 RefSeq:NP_728490.1 UniGene:Dm.29548 SMR:Q8IRJ7
EnsemblMetazoa:FBtr0072486 GeneID:38034 KEGG:dme:Dmel_CG16940
UCSC:CG16940-RC FlyBase:FBgn0035111 InParanoid:Q8IRJ7 OMA:LESGHVI
OrthoDB:EOG46M912 GenomeRNAi:38034 NextBio:806667 Uniprot:Q8IRJ7
Length = 1044
Score = 103 (41.3 bits), Expect = 0.00024, P = 0.00024
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 30 EVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
E+GVHI+DVSHF+ LD R+T++YL ++ I M+P L CSL
Sbjct: 594 EIGVHISDVSHFLIEDNELDNIVKERSTSIYLANEVIHMLPQSLCMR-CSL 643
>TIGR_CMR|SO_3935 [details] [associations]
symbol:SO_3935 "ribonuclease R" species:211586 "Shewanella
oneidensis MR-1" [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008997 "ribonuclease R activity" evidence=ISS] HAMAP:MF_01895
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011805 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
GO:GO:0003723 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0090305
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0016070
InterPro:IPR022967 SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175
GO:GO:0008859 InterPro:IPR013223 Pfam:PF08206 TIGRFAMs:TIGR00358
HOGENOM:HOG000071120 KO:K12573 OMA:FGFLIPD InterPro:IPR013668
Pfam:PF08461 TIGRFAMs:TIGR02063 RefSeq:NP_719466.1
ProteinModelPortal:Q8EAG7 GeneID:1171573 KEGG:son:SO_3935
PATRIC:23527548 ProtClustDB:CLSK907414 Uniprot:Q8EAG7
Length = 808
Score = 100 (40.3 bits), Expect = 0.00038, P = 0.00038
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSL 80
V IADVS++++ + LD EA R +VY + I M+P +S LCSL
Sbjct: 297 VAIADVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSL 344
>UNIPROTKB|P30850 [details] [associations]
symbol:rnb "ribonuclease II" species:83333 "Escherichia
coli K-12" [GO:0004540 "ribonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IGI] [GO:0016078
"tRNA catabolic process" evidence=IGI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008859
"exoribonuclease II activity" evidence=IEA] HAMAP:MF_01036
InterPro:IPR001900 InterPro:IPR003029 InterPro:IPR004476
InterPro:IPR011129 InterPro:IPR011804 Pfam:PF00575 Pfam:PF00773
PROSITE:PS50126 SMART:SM00357 SMART:SM00955 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003723 InterPro:IPR012340
SUPFAM:SSF50249 GO:GO:0016078 GO:GO:0008408 InterPro:IPR022967
SMART:SM00316 InterPro:IPR022966 PROSITE:PS01175 BRENDA:3.1.13.1
GO:GO:0008859 EMBL:X67913 PIR:A64877 RefSeq:NP_415802.1
RefSeq:YP_489554.1 PDB:2ID0 PDB:2IX0 PDB:2IX1 PDBsum:2ID0
PDBsum:2IX0 PDBsum:2IX1 ProteinModelPortal:P30850 SMR:P30850
DIP:DIP-10724N IntAct:P30850 MINT:MINT-1248196 PaxDb:P30850
PRIDE:P30850 EnsemblBacteria:EBESCT00000004108
EnsemblBacteria:EBESCT00000004109 EnsemblBacteria:EBESCT00000015364
GeneID:12934347 GeneID:945864 KEGG:ecj:Y75_p1261 KEGG:eco:b1286
PATRIC:32117840 EchoBASE:EB1577 EcoGene:EG11620 eggNOG:COG4776
HOGENOM:HOG000271427 KO:K01147 OMA:ERDIADW ProtClustDB:PRK05054
BioCyc:EcoCyc:EG11620-MONOMER BioCyc:ECOL316407:JW1279-MONOMER
BioCyc:MetaCyc:EG11620-MONOMER EvolutionaryTrace:P30850
Genevestigator:P30850 InterPro:IPR013223 PANTHER:PTHR23355:SF6
Pfam:PF08206 TIGRFAMs:TIGR00358 TIGRFAMs:TIGR02062 Uniprot:P30850
Length = 644
Score = 96 (38.9 bits), Expect = 0.00076, P = 0.00076
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 33 VHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
V IAD + +I G+ LD+ A +RA T YL I M+P LS +LCSLR
Sbjct: 226 VAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 274
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 81 55 0.00091 102 3 11 22 0.45 27
29 0.40 27
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 393 (42 KB)
Total size of DFA: 65 KB (2060 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 7.39u 0.08s 7.47t Elapsed: 00:00:23
Total cpu time: 7.39u 0.09s 7.48t Elapsed: 00:00:25
Start: Thu Aug 15 14:24:57 2013 End: Thu Aug 15 14:25:22 2013