RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4862
         (81 letters)



>d2ix0a4 b.40.4.16 (A:173-557) Exoribonuclease 2, RNB {Escherichia
           coli [TaxId: 562]}
          Length = 385

 Score = 72.7 bits (177), Expect = 2e-17
 Identities = 26/60 (43%), Positives = 35/60 (58%)

Query: 22  KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
           K     K ++ V IAD + +I  G+ LD+ A +RA T YL    I M+P  LS +LCSLR
Sbjct: 43  KALPDDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLR 102


>d2vnud4 b.40.4.16 (D:495-910) Exosome complex exonuclease RRP44
           {Saccharomyces cerevisiae [TaxId: 4932]}
          Length = 416

 Score = 71.2 bits (173), Expect = 6e-17
 Identities = 39/58 (67%), Positives = 44/58 (75%)

Query: 22  KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCS 79
           KK      EVGVHIADV+HF+KPGT LD E A R T+VYLVDKRIDM+P LL  +LCS
Sbjct: 63  KKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARGTSVYLVDKRIDMLPMLLGTDLCS 120


>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 401

 Score = 50.0 bits (118), Expect = 2e-09
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 22  KKKSKKKGEVGVHIADVSHFIKPGTPLDEEAALRATTVYLVDKRIDMVPGLLSGNLCSLR 81
           +        + VH+ADV+  + P +PLD EA  R  T+YL D+ I M+P  L        
Sbjct: 105 EDLGGGLTRLWVHVADVAALVAPDSPLDLEARARGATLYLPDRTIGMLPDELVAKAGLGL 164


>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco
           (Nicotiana tabacum), UROD-III [TaxId: 4097]}
          Length = 343

 Score = 24.5 bits (52), Expect = 1.6
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 4   GEKEEERKGSEEPETKKRKKKSKKKGEVGVHIADVSHFIKPGTPLD 49
           G KE               KK+ K      HI ++ H IK GTP +
Sbjct: 293 GSKEFITN-----RINDTVKKAGKGK----HILNLGHGIKVGTPEE 329


>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 356

 Score = 23.7 bits (50), Expect = 3.3
 Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 4/33 (12%)

Query: 17  ETKKRKKKSKKKGEVGVHIADVSHFIKPGTPLD 49
             K+             +IA++ H + P    +
Sbjct: 310 LVKQMLDDFGPHR----YIANLGHGLYPDMDPE 338


>d1zbra1 d.126.1.6 (A:3-341) Putative peptidyl-arginine deiminase
           {Porphyromonas gingivalis [TaxId: 837]}
          Length = 339

 Score = 23.2 bits (49), Expect = 5.1
 Identities = 4/19 (21%), Positives = 9/19 (47%)

Query: 30  EVGVHIADVSHFIKPGTPL 48
           +   HI  ++ F+   T +
Sbjct: 202 DTDGHIDTLARFVDTRTIV 220


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanobacterium thermoautotrophicum [TaxId:
           145262]}
          Length = 247

 Score = 22.8 bits (49), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 45  GTPLDEEAALRATTVYLVD 63
           G PLDEE  +  TT+Y VD
Sbjct: 201 GEPLDEETLMEKTTIYRVD 219


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.8 bits (49), Expect = 6.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 45  GTPLDEEAALRATTVYLVD 63
           G P DE+     TT+Y +D
Sbjct: 200 GAPADEDDLKERTTIYRID 218


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
           {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.8 bits (49), Expect = 6.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 45  GTPLDEEAALRATTVYLVD 63
           G P+  E A + TT+Y VD
Sbjct: 200 GKPMSSEEAAKRTTIYRVD 218


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.130    0.355 

Gapped
Lambda     K      H
   0.267   0.0432    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,344
Number of extensions: 11850
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 15
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 47 (22.6 bits)