RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4866
(537 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 177 bits (452), Expect = 5e-50
Identities = 119/449 (26%), Positives = 210/449 (46%), Gaps = 30/449 (6%)
Query: 70 TACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN 129
T I AF T + F L + + + +S +V+I +G + + AG L +
Sbjct: 16 TGVIGAFLTLIKFFKRFGALTSIGACAASTVLS----GLIVSIFSVGCLIGSLFAGKLGD 71
Query: 130 RIGRKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
R GRK SLL+ + ++ ++ +S L V R + G + I V+ PMY+ EI+
Sbjct: 72 RFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAP 131
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTY-------SLIIPIIFTVTFMFMP 240
+RG +G+L+Q+ GIL ++G L+ + + I+ + +F+P
Sbjct: 132 KKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLP 191
Query: 241 ESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN--FREFMGRSN 298
ESP + +K + +A L LR V E+Q K + ++VE + E
Sbjct: 192 ESPRWLVLKGKLEEARAVLAKLRG--VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKT 249
Query: 299 MKAFVFMAF-LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTY 357
++ + M L +F+ TG+ +I Y+ TIF + S ++I+ ++ V F + +
Sbjct: 250 VRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL-GLSDSLLVTIIVGVVNFVFTFIAIF 308
Query: 358 YIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLG 417
+DR GRR L L+ +AG ++ + G V + + V + I L FF LG
Sbjct: 309 LVDRFGRRPLLLLGAAGMAICFLVLG----VALLGVAKSKGAGIVAIVFILLFIAFFALG 364
Query: 418 FGPLFTPLLSEYFSSNMKAVS---CAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGG 474
+GP+ ++SE F ++ + N L LI + LF ++ IG Y +F G
Sbjct: 365 WGPVPWVIVSELFPLGVRPKAMAIATAANWLAN--FLIGF-LFPIITGAIGGYVFLVFAG 421
Query: 475 VSSLVCTVYLYYFLLETKGKTFNEIQYMF 503
+ L +++++F+ ETKG+T EI +F
Sbjct: 422 LLVLF-ILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 142 bits (360), Expect = 6e-37
Identities = 118/471 (25%), Positives = 208/471 (44%), Gaps = 50/471 (10%)
Query: 56 YLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEI 115
+ ++F + T I +F + S + VV+I +
Sbjct: 34 AIGGLMFGYD----TGVIGGALALPAFEF---KFTSANSDSYSSSLW----GLVVSIFLV 82
Query: 116 GNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM---RTLQGFSMA 172
G ++ + AG L +R GRK SLL+ + I+ + L + ++ R L G +
Sbjct: 83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVG 142
Query: 173 AIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-------VLGSELSYMNYLTYS 225
+ PMYL EI+ ++RG + +L+Q++ GIL Y L + L + L
Sbjct: 143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQ 202
Query: 226 LIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSELQ--IIKQNT 281
LI + + F+PESP + K + +A +SL LR + ++ EL+ IK++
Sbjct: 203 LIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI 262
Query: 282 SKNVERTNFREF--MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIF----ASSETFL 335
K + ++ R + L F+ FTG+ +I+ Y+ TIF S++
Sbjct: 263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAF 322
Query: 336 PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 395
+SI+ + F + + +DR GRR L L+ +AG ++ F+ G +
Sbjct: 323 ---LVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG--ILGASFVTGS 377
Query: 396 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVI-----NILCTT 448
+ V + I L FF +G+GP+ ++SE F ++ K +S AV N +
Sbjct: 378 SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGF 437
Query: 449 LGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKTFNEI 499
L M + IG+ F+F G +++ +++Y+FL ETKG+T EI
Sbjct: 438 LFPT-------MLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 92.4 bits (230), Expect = 6e-20
Identities = 95/435 (21%), Positives = 179/435 (41%), Gaps = 60/435 (13%)
Query: 109 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY------- 161
VA IG + G NR GR+ SL + + S + + +
Sbjct: 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY 119
Query: 162 -----VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL------YTY 210
+ R + G + ++SPMY+ EI+ IRG + + Q + G L Y
Sbjct: 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179
Query: 211 VLGSELSYMN-----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 264
+ S++N Y+ S IP ++F + F+PE+P + + ++ +A L+ +
Sbjct: 180 ARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239
Query: 265 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF-------LAVFRAFTGV 317
T LQ IK + + K +F L+VF+ F G+
Sbjct: 240 NT--LATQALQEIKHSLDHGRKTGG----------KLLMFGVGVIVIGVMLSVFQQFVGI 287
Query: 318 QSIIAYANTIFASSETFLPSDYI-SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 376
++ YA IF + + +I+ +I L + +D+ GR+ L ++ + G +
Sbjct: 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 377 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-- 434
+ F G +Y V LS+ F + +GP+ LLSE F + +
Sbjct: 348 IGMFSLGTAFYTQAP--------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399
Query: 435 KAVSCAV-----INILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLL 489
KA++ AV N + + K +L+ +S +++ G ++ ++++ F+
Sbjct: 400 KALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY-GCMGVLAALFMWKFVP 458
Query: 490 ETKGKTFNEIQYMFK 504
ETKGKT E++ +++
Sbjct: 459 ETKGKTLEEMEALWE 473
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 71.6 bits (176), Expect = 2e-13
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 3/172 (1%)
Query: 68 CVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGML 127
+ + F +G+ +P L L +S ++ +V+ +G L + AG L
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYL 57
Query: 128 VNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISE 187
+R GR+ LL+ + ++ ++ S+ L V R L G A+Y + + E
Sbjct: 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFP 117
Query: 188 TSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 239
RG LF LG L +LG L+ + +I I + +
Sbjct: 118 PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
Score = 51.5 bits (124), Expect = 5e-07
Identities = 36/181 (19%), Positives = 68/181 (37%), Gaps = 1/181 (0%)
Query: 60 VLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYL 119
L L L + +A +SF + + L + + +S E ++++ +G L
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226
Query: 120 SPIPAGMLVNRIGRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 178
+ G+L +R+GR+ LL+ G + ++ + S+ L V L GF + +
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286
Query: 179 PMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMF 238
E++ RGT LF LG +L L +I +
Sbjct: 287 LTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346
Query: 239 M 239
+
Sbjct: 347 L 347
Score = 44.6 bits (106), Expect = 9e-05
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 14/187 (7%)
Query: 303 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD--YISILFAIILLVSIFPSTYYID 360
+ + LA F G ++ Y ++ + LF + ++ D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 361 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 420
R GRR L L+ + + S L LL F P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLAL------------APSLALLLVALLLLGFGLGFAFP 284
Query: 421 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
L SE + + + N + G + L L+ G FL +L+
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 481 TVYLYYF 487
+ L
Sbjct: 345 ALLLLLL 351
Score = 36.1 bits (84), Expect = 0.039
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 15/188 (7%)
Query: 301 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 360
+F+ F + + S + I F++ + + Y D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG--LIVSAFSLGYALGSLLAGYLSD 59
Query: 361 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 420
R GRR + L+ +L S + +S L L P
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAF-------------ASSLWLLLVGRFLLGLGGGALYP 106
Query: 421 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
L++E+F + + + + L+ L L+ + +G FL + L+
Sbjct: 107 AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLL 166
Query: 481 TVYLYYFL 488
+ L + L
Sbjct: 167 ALLLLFLL 174
Score = 34.2 bits (79), Expect = 0.15
Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 2/182 (1%)
Query: 59 TVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNY 118
++L F+ + F G+ P L+++ P A +G
Sbjct: 78 SLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL 137
Query: 119 LSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYS-RSVLGLYVMRTLQGFSMAAIYVI 177
L P+ G+L +G +W L+ + ++ ++ R +L L + L F +
Sbjct: 138 LGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTY 197
Query: 178 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFM 237
P+YL E+ S G L + GIL + G + L+I ++ +
Sbjct: 198 LPLYLQEVLGLSA-AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGL 256
Query: 238 FM 239
+
Sbjct: 257 LL 258
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 67.8 bits (166), Expect = 2e-12
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 38/382 (9%)
Query: 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 131
+AAF G+ + P L L+++ + +SP E ++ +G L+ AG L +R
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 132 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 191
GR+ LL+ + ++ +++ S+ L V+R LQG A++ + + + R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 192 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 251
G L LG +LG L+ + + +I I + + +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL---AALLLPRPP 176
Query: 252 EGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 311
L + ++ +A L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLL---------------------LRDPVLWLLLALLLFG 215
Query: 312 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 371
AF + + + + S + L ++ + DR GRR L++
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAG--LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLA 273
Query: 372 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 431
L + L +S +++ LLG L F L L+S+
Sbjct: 274 LLLLILAALGLALLSLTE---------SSLWLLVALLLLGFGAGLVFPALNA-LVSDLAP 323
Query: 432 SNMKAVSCAVINILCTTLGLIS 453
+ + + N + G +
Sbjct: 324 KEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 67.7 bits (166), Expect = 5e-12
Identities = 86/411 (20%), Positives = 171/411 (41%), Gaps = 53/411 (12%)
Query: 105 EGSWVVAIIE----IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 160
E +W V + + +G L G L +R GRK LL++ +T S ++ +S +
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 161 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMN 220
V R L G + I+V + + E R +GTL Q+ LG VL ++Y
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG----LVLLPLVAYFI 239
Query: 221 ----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 275
+L ++ +P +F + F+PESP + + + +A++ L+ + ++ +E+
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL 299
Query: 276 II--KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSET 333
+ +++ S + ++ +F + N++ + F T +Y +
Sbjct: 300 SLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT--TAF----SYYGLVLDLGNL 353
Query: 334 FLPSDYIS-ILFAIILLVSIFPSTYYIDRAGRR---VLFLVSSAGCSLFSFIAGLYYYVT 389
+ Y+ + ++ L + + IDR GRR L+ + L + Y
Sbjct: 354 GG-NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412
Query: 390 IELQYEIPYTSWVPFLSISLLGVF-----FNLGFGPLFTPLLSEYFSSNMKAVSCAVINI 444
++++LG F F + + L+T E + + ++ + V +
Sbjct: 413 R--------------TALAVLGKFGITSAFQMVY--LYTA---ELYPTVVRNLGVGVCST 453
Query: 445 LCTTLGLISYKLFFLMDKHIGMYSNFLFGGVSSLVCTVYLYYFLLETKGKT 495
+ +IS L +L +K + + LFGG++ L + L FL ETKG
Sbjct: 454 MARVGSIISPFLVYLGEKWLFLP-LVLFGGLALLAGILTL--FLPETKGVP 501
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 47.0 bits (112), Expect = 2e-05
Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 25/299 (8%)
Query: 101 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 156
+ P + ++ + IG + G L +RIGR+ WS+L+ T + +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC----ALATN 104
Query: 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL----FQISCHLGILYTYVL 212
V L ++R L G + + + E + RGT L + I +G L
Sbjct: 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Query: 213 GSELSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQ 271
+ + I P++ + F+PES + + + + + + + Q
Sbjct: 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPES-IDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 272 SEL--QIIKQNTSKNVERTNFREFMGRSNMKAFV--FMAFLAVFRAFTGVQSIIAYANTI 327
S L Q Q T ++V + F+ R + ++ FM + V+ + ++
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283
Query: 328 FASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 386
+ + T + I+ + DR G RV L+ G ++F+ + G
Sbjct: 284 LSLAATGGALFNFGGVIGSIIF------GWLADRLGPRVTALLLLLG-AVFAVLVGSTL 335
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 44.6 bits (106), Expect = 2e-05
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
Query: 107 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 166
++A +G + +G+L +R GRK LL+ I S + S ++ L + R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 167 QGFSMAAIYVISPMYLGEISETSIR----GTIGTLFQISCHLGILYTYVLGSELSY-MNY 221
QGF A V + +I R G + + LG VL L + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 222 LTYSLIIPIIFTVTFMFMPES 242
L +++ F + +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 40.7 bits (95), Expect = 0.002
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 92 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151
L S E + + + + I+ +G + G L +++GRK LL+ + A
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG---FFA 246
Query: 152 MYSRSVLG---LYVMRTLQGFSMAAIYVISPMYLGEISETSIRG----------TIGTLF 198
+S V G R L GF + I Y E RG IG ++
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 199 QISCHLGIL----YTYVLGSELSYMNYLTYSLI--IPIIFTV-TFMFMPESPYFY 246
+ I+ +++ +GS + ++ + ++ P +F + FMPESP F+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF 361
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 36.1 bits (84), Expect = 0.042
Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 52/322 (16%)
Query: 125 GMLVNRIGRKWSLLMT----GPITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYV 176
G +RIGRK +L++T G T ++ Y+ + + L + R +QGFS+ +
Sbjct: 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115
Query: 177 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLI------IPI 230
+ +YL E + RG G+ Q+ +G+L + LSY+ L + IP
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL--LGDDALLEWGWRIPF 173
Query: 231 IFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNF 290
+ + + + L +LR + E K +R
Sbjct: 174 LVSAVLV------------------LIGL-YLRRNLEETPVFE----KAQEKHKKKRGPI 210
Query: 291 REFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD--YISILFAIIL 348
E + K F+ L V T I Y T + + + +L I+
Sbjct: 211 AE-TLTKHRKPFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILF 268
Query: 349 LVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSIS 408
++I S DR GRR + + +F+ +A L + + + + F +
Sbjct: 269 FITIPLSGALSDRIGRRPVLI-------IFTVLAALLAVPLLMALLDSG-SFTLFFFLVL 320
Query: 409 LLGVFFNLGFGPLFTPLLSEYF 430
+ + + GP L E F
Sbjct: 321 GMALIGGMYTGP-MGSFLPELF 341
Score = 30.3 bits (69), Expect = 2.5
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 20/106 (18%)
Query: 100 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTG------------PITTAS 147
+S N V+ + I +++ +G L +RIGR+ L++ + +
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG 310
Query: 148 WIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGT 193
+ VLG+ ++ +L E+ T +R T
Sbjct: 311 SFTLFFF-LVLGMALI-------GGMYTGPMGSFLPELFPTEVRYT 348
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 33.3 bits (77), Expect = 0.29
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 125 GMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 177
G L +R GRK LL + + ++ S L V+R +Q + + VI
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVI 114
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 32.0 bits (71), Expect = 0.85
Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 8/307 (2%)
Query: 92 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151
LL + +++ +G + + AG L +R GR+ L++ + ++
Sbjct: 27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86
Query: 152 MY--SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR------GTIGTLFQISCH 203
+ + L ++R LQG + ++ L E + +
Sbjct: 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA 146
Query: 204 LGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLR 263
LG L +L L + + L + + + + A + + ++ +
Sbjct: 147 LGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGK 206
Query: 264 NKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAY 323
+ ++ + F + + F+ + ++
Sbjct: 207 LLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGA 266
Query: 324 ANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 383
A + A + +L LL ++ + +DR GR + +L I
Sbjct: 267 AGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILL 326
Query: 384 LYYYVTI 390
L + +
Sbjct: 327 LVLLLAL 333
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.8 bits (72), Expect = 0.88
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 101 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA-MYSRSVLG 159
+SP+ + +V IG + G L + +GR+ + + + I +V
Sbjct: 271 LSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV 330
Query: 160 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYM 219
L + Q + I+ I P +LGE T R G+ +TY LG+ +
Sbjct: 331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA-----------AGLGFTYQLGNLGGAL 379
Query: 220 N 220
Sbjct: 380 A 380
Score = 31.8 bits (72), Expect = 0.90
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 125 GMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGE 184
G+ +R GR+ ++ + + +A + ++ + +++ R + G M Y S Y+ E
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE 127
Query: 185 ISETSIRGTIGTLFQISCHLGILYTYVLGSELSYM-----NYLTYSLIIPIIFTVTFMF- 238
+R L +G + + S + + L + I+PIIF +
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKN 187
Query: 239 MPESPYF 245
+PE+ +
Sbjct: 188 IPEAEDW 194
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 31.5 bits (72), Expect = 1.0
Identities = 60/380 (15%), Positives = 130/380 (34%), Gaps = 61/380 (16%)
Query: 62 FLFSFLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSP 121
FS+ + + FA+S P+ +++ + + +S + +VA+ + +
Sbjct: 3 LFFSWFGFFLSFSVW-----FAFS-PLAVQMIKDD--LGLSTAQLGNLVAVPVLAGAVLR 54
Query: 122 IPAGMLVNRIG-RKWS--LLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMA----AI 174
I G LV++ G R + L+ I +A+ S SV L ++R G + +
Sbjct: 55 IILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV--LLLLRLFIGIAGGSFASCM 112
Query: 175 YVISPMYLGEISET--SIRGTIGTLFQISCHL-------GILYTYVLGSELS--YMNYLT 223
IS + +I T + G + +++ L + L+ + +
Sbjct: 113 PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIV 172
Query: 224 YSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSK 283
+ I+ + + F ++P + + + +L++ + +
Sbjct: 173 PAGILLLPALLIFFVGADTPP----GKPATGKLSFKGARWSVGTGALGDQLKVFRDRHT- 227
Query: 284 NVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIA-YANTIFASSETFLPSDYISI 342
+ + + F +F GV SI A + F S+ + +
Sbjct: 228 -----------------WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKV--TAGAYAS 268
Query: 343 LFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWV 402
L ++ ++ DR G L+S G ++ +F+ L + L V
Sbjct: 269 LGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLA--------V 320
Query: 403 PFLSISLLGVFFNLGFGPLF 422
+ L F G G F
Sbjct: 321 FIVLFVALFFFSGAGNGSTF 340
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 31.5 bits (72), Expect = 1.1
Identities = 61/366 (16%), Positives = 125/366 (34%), Gaps = 57/366 (15%)
Query: 101 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 156
+S + +V + G + P G L++R G + +++ G T Y
Sbjct: 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY--- 82
Query: 157 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 216
+ LY++R L G + A + + + S R T ++F + LG ++G L
Sbjct: 83 -VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG----IIGGPL 137
Query: 217 SYMNYLTYSL-IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 275
+ +S II V + + I + KA + + + +E Q
Sbjct: 138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKF-IPDPPQKAKWLTEEEKYIVVGGLLAEQQ 196
Query: 276 IIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETF 334
+T K + + Q ++ F + T+
Sbjct: 197 GKGPSTPKK-----------YQIKELLKDRRVWGLA----LGQFLVNIGLGFFLTWFPTY 241
Query: 335 LPSDYIS------------ILFAIILLVSIFPSTYYIDRAGRRVLF--LVSSAGCSLFSF 380
L + + I ++ + + R G+ ++F + + S
Sbjct: 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSL 301
Query: 381 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGV-FFNLGFGPLFTPLLSEYFSSNMKAVSC 439
+ YV I P+ +++L+ + FF LG G + L+S+ N+ ++
Sbjct: 302 LMFATNYVNI------------PYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTG 349
Query: 440 AVINIL 445
+IN L
Sbjct: 350 GLINSL 355
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 31.2 bits (71), Expect = 1.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 366 VLFLVSSAGCSLFSFIAGLYYYVTIEL---QYEIPYTSWVPFLSISLLGVFF 414
+LF++ AG + IAG YV I+ E+ T+ V FL I+L+ ++
Sbjct: 6 LLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEMSLTTLVIFLIIALVVLYL 57
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 30.9 bits (70), Expect = 1.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 118 YLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIY 175
+L PI G V++ G + ++ G + W++ Y+ S+ LY + G A+Y
Sbjct: 53 WLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAGAVY 109
>gnl|CDD|165125 PHA02758, PHA02758, hypothetical protein; Provisional.
Length = 321
Score = 30.0 bits (67), Expect = 2.9
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 303 VFMAFLAVFRAFTGVQSIIAYANTIFA------------SSETFLPSDYISILFAIILLV 350
+F+ LA F A G Q II A I A S ++ L A +LL+
Sbjct: 63 MFLYLLAFFGAIGGTQFIIFAAVIIAAFALKEKPKLAAPSHAGLAEPLKLAALAAFVLLL 122
Query: 351 SIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLL 410
+ A ++ + V A + + G + ++ + +
Sbjct: 123 GLILPIILFYDAAKKFRYDVXGAIALKAAALLGAIGMGL--FMFGAALSASTDKVHLLSF 180
Query: 411 GVFFNLGFGPLFTPL 425
G FN F + PL
Sbjct: 181 GGVFNDAFAGILGPL 195
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 29.7 bits (68), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 357 YY----IDRAGRRVLFLVSSAG 374
YY +DRA RRV+F+ S+ G
Sbjct: 108 YYLSIVLDRATRRVVFMASTEG 129
>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1. This model
represents the full length, over a thousand amino acids,
of a multicopy family of eukaryotic proteins, many of
which are designated ubiquitin-activating enzyme E1.
Members have two copies of the ThiF family domain
(pfam00899), a repeat found in ubiquitin-activating
proteins (pfam02134), and other regions.
Length = 1008
Score = 29.9 bits (67), Expect = 3.9
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 34 PPNIQQNNGQ--WNYTADFGSELRYLHTVLFLFSFLCVTACIAAFTTGMSFA-W--SAPV 88
P +I+ + G W+ S L++ SF+ A + A G+ FA SA
Sbjct: 682 PLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADA 741
Query: 89 LEELLSKESPIPMSPNEGSWVV 110
L +LS+ P +
Sbjct: 742 LLNILSEVKIPEFKPRSNKKIQ 763
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of
integral membrane proteins where the alignment appears
to contain two duplicated modules of three transmembrane
helices. The proteins are involved in the transport of
anions across the cytoplasmic membrane during taurine
metabolism as an exporter of sulfoacetate. This family
used to be known as DUF81.
Length = 236
Score = 29.5 bits (67), Expect = 4.4
Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 27/124 (21%)
Query: 333 TFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 392
LP + +LF ++LL++ G L + G
Sbjct: 86 LLLPGAVLKLLFGVLLLLAALLMLLRKKLGAEASRRPPGPLGLLLAGGLVGFL------- 138
Query: 393 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV--SCAVINILCTTLG 450
F +G G L P L +K + + ++ +
Sbjct: 139 ------------------SGLFGIGGGFLLVPALLYLLGLPLKKAVATSLAVFLVSSLAA 180
Query: 451 LISY 454
L+ Y
Sbjct: 181 LLGY 184
>gnl|CDD|218922 pfam06168, DUF981, Protein of unknown function (DUF981). Family of
uncharacterized proteins found in bacteria and archaea.
Length = 189
Score = 28.4 bits (64), Expect = 6.3
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 307 FLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRA-GRR 365
L + F G+ I Y I+ T P + L+ + L + P T +DR G++
Sbjct: 98 PLGILALFLGL-YTIYYGVAIYNYGLTREPLLALLGLYILTGLAGLLPPTLALDRLKGKK 156
Query: 366 VLFLVSSAGCSLFSFIAGLYYYVTI 390
+L ++ + L + +A +
Sbjct: 157 ILLILGAVILILAALLALFIGIEAV 181
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.0 bits (65), Expect = 7.7
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 124 AGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG 183
A +++NRIG K +LL+ G I + + + ++ + L + +++ L F + + V Y+
Sbjct: 279 APLIINRIGAKNALLIAGTIMSVRILGSSFATTALEVVILKMLHMFEVPFLLVGCFKYIT 338
Query: 184 EISETSIRGTIGTL-FQISCHLGILYTYVL-GSELSYMNYLTYSLIIPII---FTVTFMF 238
+ + TI + FQ S L ++ L G + + L++ I FT+ +F
Sbjct: 339 SQFDVRLSATIYLIGFQFSKQLAMILLSTLAGIMYDSIGFQGAYLVLGGIVLSFTLISVF 398
Query: 239 MPESP 243
Sbjct: 399 TLSGS 403
>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 28.8 bits (65), Expect = 8.0
Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 28/122 (22%)
Query: 301 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVS--------- 351
VF L V A+ Y T S LPS + IL A ILL +
Sbjct: 154 VGVFFGPLIVLGAY--------YIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDI 205
Query: 352 ---IFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSIS 408
+ + R R L+ L I + P + L++
Sbjct: 206 RNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGL--------FPVWGLLFLLALP 257
Query: 409 LL 410
L
Sbjct: 258 LA 259
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 28.7 bits (65), Expect = 8.3
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 357 YY----IDRAGRRVLFLVSSAG 374
YY +DR+ RR + + S+ G
Sbjct: 106 YYLSIVLDRSSRRPVLMASTEG 127
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.8 bits (65), Expect = 8.7
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 124 AGMLVNRIGRKWSLLMTGPI-TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 178
AG + +R GRK + + AS + ++ S L R LQG YV++
Sbjct: 58 AGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL-FLAGRFLQGIGAGCCYVVA 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.414
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,435,460
Number of extensions: 2749380
Number of successful extensions: 4265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4157
Number of HSP's successfully gapped: 284
Length of query: 537
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 435
Effective length of database: 6,413,494
Effective search space: 2789869890
Effective search space used: 2789869890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)