RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4866
(537 letters)
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
coli [TaxId: 562]}
Length = 447
Score = 67.8 bits (164), Expect = 9e-13
Identities = 46/442 (10%), Positives = 115/442 (26%), Gaps = 33/442 (7%)
Query: 66 FLCVTACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAG 125
A + +FA + P L E S + + ++ I I S G
Sbjct: 28 LGIFFGYAAYYLVRKNFALAMPYLVEQG-------FSRGDLGFALSGISIAYGFSKFIMG 80
Query: 126 MLVNRIGRKW----SLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMY 181
+ +R + L++ + + + S+ ++V+ L G+ +
Sbjct: 81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 140
Query: 182 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--LSYMNYLTYSLIIPIIFTVTFMFM 239
+ RG I +++ + ++G +L + ++ + + +F
Sbjct: 141 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA 200
Query: 240 PESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNM 299
E + ++ + EL + + +
Sbjct: 201 FAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260
Query: 300 KAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYI 359
+ L + A S + L+ + +
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFALDK-----------SSWAYFLYEYAGIPGTLLCGWMS 309
Query: 360 DRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFG 419
D+ R +L + +Y+ P + + ++ F G
Sbjct: 310 DKVFRGNRGATGVFFMTLVTIATIVYWM--------NPAGNPTVDMICMIVIGFLIYGPV 361
Query: 420 PLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF-LMDKHIGMYSNFLFGGVSSL 478
L E + + G ++ G F+ S+
Sbjct: 362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421
Query: 479 VCTVYLYYFLLETKGKTFNEIQ 500
+ + L ++ K + +Q
Sbjct: 422 LAVILLIVVMIGEKRRHEQLLQ 443
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
562]}
Length = 417
Score = 47.5 bits (111), Expect = 3e-06
Identities = 52/440 (11%), Positives = 108/440 (24%), Gaps = 51/440 (11%)
Query: 72 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 131
+ F P L +S ++ + A I + + L G+L +++
Sbjct: 13 GLFFFFYFFIMGAYFPFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70
Query: 132 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGF----------SMAAIYVISPMY 181
G + LL + L + + A V + +
Sbjct: 71 GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130
Query: 182 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPE 241
G + LG ++ + + + S I+ + F +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190
Query: 242 SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 301
+P + N G + K + + ++
Sbjct: 191 APSSATVANAVGANHSAFSL---------------------KLALELFRQPKLWFLSLYV 229
Query: 302 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 361
VF +A + + +L A I+ + +
Sbjct: 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 362 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 421
+ + S SF TS + + + L +F
Sbjct: 290 NALLLAGTIMSVRIIGSSFA-----------------TSALEVVILKTLHMFEVPFLLVG 332
Query: 422 FTPLLSEYFSSNMKAVSCAVINILCTTLG-LISYKLFFLMDKHIGMYSNFLFGGVSSLVC 480
++ F A V L + L M + IG +L G+ +L
Sbjct: 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392
Query: 481 TVYLYYFLLETKGKTFNEIQ 500
T+ + L + Q
Sbjct: 393 TLISVFTLSGPGPLSLLRRQ 412
Score = 29.4 bits (64), Expect = 1.2
Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 5/217 (2%)
Query: 32 MIPPNIQQNNGQWNYTADFGSELRYLHTVLFLFSFLCVTACIAAFTTGMSFAWSAPVLEE 91
A+ + L LF L + + +
Sbjct: 187 AKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246
Query: 92 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 151
S + +V + E+ N A +++NRIG K +LL+ G I + I +
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS 306
Query: 152 MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTI-----GTLFQISCHLGI 206
++ S L + +++TL F + + V Y+ E TI Q++
Sbjct: 307 SFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 207 LYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESP 243
+ + + + ++ + FT+ +F P
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403
>d3c7bb2 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase
subunit beta, DsrB {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 119
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 32 MIPPNIQQNNGQWNY 46
++ P I +N G+W Y
Sbjct: 15 LLHPVIAKNYGKWKY 29
>d2v4jb2 d.58.36.2 (B:2-135) Dissimilatory sulfite reductase
subunit beta, DsrB {Desulfovibrio vulgaris [TaxId:
881]}
Length = 134
Score = 26.5 bits (59), Expect = 4.6
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 32 MIPPNIQQNNGQWNY 46
PP I +N G W Y
Sbjct: 28 FFPPVIAKNFGSWLY 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.138 0.414
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,950,779
Number of extensions: 90147
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 8
Length of query: 537
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 447
Effective length of database: 1,171,896
Effective search space: 523837512
Effective search space used: 523837512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)