BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4868
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster GN=ey PE=2 SV=3
Length = 857
Score = 167 bits (424), Expect = 2e-41, Method: Composition-based stats.
Identities = 91/109 (83%), Positives = 96/109 (88%), Gaps = 2/109 (1%)
Query: 18 KIELDGLGSDETCTTIGDNSNPG-SNL-EPEDDQARLRLKRKLQRNRTSFTNDQIDNLEK 75
K ELDG SDET + G+NSN G SN+ EDDQARL LKRKLQRNRTSFTNDQID+LEK
Sbjct: 388 KKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEK 447
Query: 76 EFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQ 124
EFERTHYPDVFARERLA KIGLPEARIQVWFSNRRAKWRREEKLRNQR+
Sbjct: 448 EFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRR 496
>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1
Length = 422
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/104 (75%), Positives = 88/104 (84%), Gaps = 2/104 (1%)
Query: 33 IGDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARER 90
+G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARER
Sbjct: 183 VGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARER 242
Query: 91 LAAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
LAAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 243 LAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1
Length = 422
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 2/103 (1%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1
Length = 422
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 2/103 (1%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2
Length = 422
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 2/103 (1%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1
Length = 422
Score = 152 bits (384), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 2/103 (1%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2
SV=1
Length = 416
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 2/103 (1%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 184 GENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 243
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++ S P+ P
Sbjct: 244 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIP 286
>sp|P47237|PAX6_CHICK Paired box protein Pax-6 (Fragment) OS=Gallus gallus GN=PAX6 PE=1
SV=1
Length = 216
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 80/90 (88%)
Query: 49 QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108
Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERLAAKI LPEARIQVWFSN
Sbjct: 1 QMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSN 60
Query: 109 RRAKWRREEKLRNQRQRGSADPTQAPNNNN 138
RRAKWRREEKLRNQR++ S P+ P +++
Sbjct: 61 RRAKWRREEKLRNQRRQASNTPSHIPISSS 90
>sp|P26630|PAX6_DANRE Paired box protein Pax-6 OS=Danio rerio GN=pax6a PE=2 SV=1
Length = 437
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 75/95 (78%), Positives = 83/95 (87%), Gaps = 2/95 (2%)
Query: 34 GDNSNP-GSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERL 91
G+N+N SN E D+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPDVFARERL
Sbjct: 203 GENTNSISSNGEDSDETQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERL 262
Query: 92 AAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRG 126
AAKI LPEARIQVWFSNRRAKWRREEKLRNQR++
Sbjct: 263 AAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQA 297
>sp|O73917|PAX6_ORYLA Paired box protein Pax-6 OS=Oryzias latipes GN=pax6 PE=2 SV=1
Length = 437
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/102 (71%), Positives = 82/102 (80%), Gaps = 5/102 (4%)
Query: 25 GSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPD 84
G+ E +I N + E+ Q RL+LKRKLQRNRTSFT +QI+ LEKEFERTHYPD
Sbjct: 201 GAGENTNSISSNGE-----DSEETQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPD 255
Query: 85 VFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRG 126
VFARERLAAKI LPEARIQVWFSNRRAKWRREEKLRNQR++
Sbjct: 256 VFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQA 297
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 14/105 (13%)
Query: 23 GLGSDETCTTIGDNSNPGSNLE--------PEDDQARLRLKRKLQRNRTSFTNDQIDNLE 74
GL S + C D +P SN+E P++DQ K+K +RNRT+FT Q+ LE
Sbjct: 98 GLFSTDKCD--ADLGDPRSNVESDSRSPDIPDEDQP----KKKHRRNRTTFTTYQLHELE 151
Query: 75 KEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119
+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWRR+EK+
Sbjct: 152 RAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKM 196
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 55/68 (80%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
KRK +R RT+FT+ Q++ LEK F RTHYPDVF RE LA KIGL EARIQVWF NRRAKWR
Sbjct: 82 KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWR 141
Query: 115 REEKLRNQ 122
++EK+ Q
Sbjct: 142 KQEKVGPQ 149
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 69/102 (67%), Gaps = 4/102 (3%)
Query: 34 GDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAA 93
G+ GS+ E +DD K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA
Sbjct: 507 GEKITSGSDDEGQDDNCA---KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAM 563
Query: 94 KIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAPN 135
K+ LPE R+QVWF NRRAKWRR+EK + R G TQ P+
Sbjct: 564 KVNLPEVRVQVWFQNRRAKWRRQEKSESLR-LGLTHFTQLPH 604
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 64/86 (74%), Gaps = 4/86 (4%)
Query: 38 NPGSNLEPEDDQARL----RLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAA 93
+PG + P +A+L + K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA
Sbjct: 112 SPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAG 171
Query: 94 KIGLPEARIQVWFSNRRAKWRREEKL 119
K+ LPE R+QVWF NRRAKWRR+EKL
Sbjct: 172 KVNLPEVRVQVWFQNRRAKWRRQEKL 197
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Query: 38 NPGSNLEPEDDQARLR----LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAA 93
+PG ++ P ++L K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA
Sbjct: 112 SPGLSVGPAAGDSKLSEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAG 171
Query: 94 KIGLPEARIQVWFSNRRAKWRREEKL 119
K+ LPE R+QVWF NRRAKWRR+EKL
Sbjct: 172 KVNLPEVRVQVWFQNRRAKWRRQEKL 197
>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
Length = 503
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 8/99 (8%)
Query: 18 KIELDGLGSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEF 77
K +DG+ D+ G+ + GS++E E D L LKRK +R+RT+FT +Q++ LEK F
Sbjct: 183 KHSIDGILGDK-----GNRLDEGSDVESEPD---LPLKRKQRRSRTTFTAEQLEELEKAF 234
Query: 78 ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
ERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++
Sbjct: 235 ERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ 273
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 62/80 (77%), Gaps = 3/80 (3%)
Query: 40 GSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPE 99
G + +P D++ + K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE
Sbjct: 107 GGDGKPSDEE---QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPE 163
Query: 100 ARIQVWFSNRRAKWRREEKL 119
R+QVWF NRRAKWRR+EKL
Sbjct: 164 VRVQVWFQNRRAKWRRQEKL 183
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 11/95 (11%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 193
Query: 115 REEKLRNQRQ-----------RGSADPTQAPNNNN 138
R+EK+ R S PT P NN+
Sbjct: 194 RQEKIDASTMKLHDSPMLSFNRPSMHPTVGPMNNS 228
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 193
Query: 115 REEKL 119
R+EKL
Sbjct: 194 RQEKL 198
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWR 193
Query: 115 REEKL 119
R+EK+
Sbjct: 194 RQEKM 198
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 30 CTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARE 89
C + G +++ N +D+Q + K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE
Sbjct: 105 CLSPGLSTSNSDNKLSDDEQ---QPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 161
Query: 90 RLAAKIGLPEARIQVWFSNRRAKWRREEKL 119
LA K+ LPE R+QVWF NRRAKWRR+EKL
Sbjct: 162 ELAMKVNLPEVRVQVWFQNRRAKWRRQEKL 191
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 66/110 (60%), Gaps = 17/110 (15%)
Query: 25 GSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPD 84
G D C + G +S G LKRK +R RT+FT+ Q++ LE+ F++THYPD
Sbjct: 194 GEDSVCLSAGSDSEEG------------MLKRKQRRYRTTFTSYQLEELERAFQKTHYPD 241
Query: 85 VFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAP 134
VF RE LA ++ L EAR+QVWF NRRAKWR+ EK Q A PT P
Sbjct: 242 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGVQ-----AHPTGLP 286
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 9/104 (8%)
Query: 22 DGLG------SDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEK 75
DG G + C + G +++ N +D+Q + K+K +RNRT+FT Q+ LE+
Sbjct: 91 DGYGDPYLGKTSSECLSPGLSTSNSDNKLSDDEQ---QPKKKHRRNRTTFTTYQLHELER 147
Query: 76 EFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119
FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWRR+EKL
Sbjct: 148 AFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEKL 191
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 198
Query: 115 REEKL 119
R+EK+
Sbjct: 199 RQEKM 203
>sp|P09082|GSB_DROME Protein gooseberry OS=Drosophila melanogaster GN=gsb PE=2 SV=1
Length = 427
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 23/135 (17%)
Query: 34 GDNSNPGSNLEPEDD-QARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLA 92
G + GS E EDD + ++LKRK +R+RT+F+NDQID LE+ F RT YPDV+ RE LA
Sbjct: 160 GGAGSVGSEDESEDDAEPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELA 219
Query: 93 AKIGLPEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAPNNNNNNIVNNNNNSSDGC 152
GL EAR+QVWFSNRRA+ R++ N +Q S PT ++S G
Sbjct: 220 QSTGLTEARVQVWFSNRRARLRKQ---LNTQQVPSFAPT---------------STSFGA 261
Query: 153 TP----SPAPQVSMD 163
TP +PAP + M
Sbjct: 262 TPTTSAAPAPNMGMS 276
>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
Length = 479
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 18 KIELDGLGSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEF 77
K +DG+ S+ S+ GS+++ E D L LKRK +R+RT+FT +Q++ LE+ F
Sbjct: 185 KHSIDGILSERAS---APQSDEGSDIDSEPD---LPLKRKQRRSRTTFTAEQLEELERAF 238
Query: 78 ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLR-----NQRQRGSADPTQ 132
ERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N G PT
Sbjct: 239 ERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTA 298
Query: 133 APNNNNNNIVNNNNNSSDGCTPSPAPQVSMDPTD 166
P + + P+ PQ DP+
Sbjct: 299 MPTLPTYQLSETSYQ------PTSIPQAVSDPSS 326
>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
Length = 479
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 18 KIELDGLGSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEF 77
K +DG+ S+ S+ GS+++ E D L LKRK +R+RT+FT +Q++ LE+ F
Sbjct: 185 KHSIDGILSERAS---APQSDEGSDIDSEPD---LPLKRKQRRSRTTFTAEQLEELERAF 238
Query: 78 ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLR-----NQRQRGSADPTQ 132
ERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++ N G PT
Sbjct: 239 ERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFPPTA 298
Query: 133 APNNNNNNIVNNNNNSSDGCTPSPAPQVSMDPTD 166
P + + P+ PQ DP+
Sbjct: 299 MPTLPTYQLSETSYQ------PTSIPQAVSDPSS 326
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 54/65 (83%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 103 KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVWFQNRRAKWR 162
Query: 115 REEKL 119
R+EKL
Sbjct: 163 RQEKL 167
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 100 bits (248), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA KI LPE R+QVWF NRRAKWRR
Sbjct: 85 KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRR 144
Query: 116 EEKL 119
+EK+
Sbjct: 145 QEKI 148
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE++HYPDV++RE LA K+ LPE R+QVWF NRRAKWR
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWR 92
Query: 115 REEKL 119
R+EK+
Sbjct: 93 RQEKM 97
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan paniscus
GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
Query: 115 REEKLRN 121
R+E+L +
Sbjct: 84 RQERLES 90
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
Query: 115 REEKLRN 121
R+E+L +
Sbjct: 84 RQERLES 90
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo sapiens
GN=RAX2 PE=1 SV=1
Length = 184
Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
Query: 115 REEKLRN 121
R+E+L +
Sbjct: 84 RQERLES 90
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
Query: 115 REEKLRN 121
R+E+L +
Sbjct: 84 RQERLES 90
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
Length = 520
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/99 (51%), Positives = 71/99 (71%), Gaps = 8/99 (8%)
Query: 18 KIELDGLGSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEF 77
K +DG+ D+ G+ + GS++E E D L LKRK +R+RT+FT +Q++ LEK F
Sbjct: 185 KHSIDGILGDK-----GNRLDEGSDVESEPD---LPLKRKQRRSRTTFTAEQLEELEKAF 236
Query: 78 ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
ERTHYPD++ RE LA + L EAR+QVWFSNRRA+WR++
Sbjct: 237 ERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQ 275
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K+K +RNRT+FT Q+ LE+ FE +HYPDV++RE LAAK+ LPE R+QVWF NRRAKWR
Sbjct: 24 KKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWR 83
Query: 115 REEKLRN 121
R+E+L +
Sbjct: 84 RQERLES 90
>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
Length = 483
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 14/132 (10%)
Query: 40 GSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPE 99
GS+++ E D L LKRK +R+RT+FT +Q++ LE+ FERTHYPD++ RE LA + L E
Sbjct: 204 GSDIDSEPD---LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 260
Query: 100 ARIQVWFSNRRAKWRREEKLR-----NQRQRGSADPTQAPNNNNNNIVNNNNNSSDGCTP 154
AR+QVWFSNRRA+WR++ N G+ PT P + + P
Sbjct: 261 ARVQVWFSNRRARWRKQAGANQLMAFNHLIPGAFPPTAMPALPTYQLSETSYQ------P 314
Query: 155 SPAPQVSMDPTD 166
+ PQ DP++
Sbjct: 315 TSIPQAVSDPSN 326
>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
Length = 484
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 63/84 (75%), Gaps = 3/84 (3%)
Query: 33 IGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLA 92
+ S GS+++ E D L LKRK +R+RT+FT +Q++ LE+ FERTHYPD++ RE LA
Sbjct: 198 VSPESEEGSDIDSEPD---LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELA 254
Query: 93 AKIGLPEARIQVWFSNRRAKWRRE 116
+ L EAR+QVWFSNRRA+WR++
Sbjct: 255 QRAKLTEARVQVWFSNRRARWRKQ 278
>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
Length = 461
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 61/77 (79%), Gaps = 3/77 (3%)
Query: 40 GSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPE 99
GS+++ E D L LKRK +R+RT+FT +Q++ LE+ FERTHYPD++ RE LA + L E
Sbjct: 181 GSDIDSEPD---LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTE 237
Query: 100 ARIQVWFSNRRAKWRRE 116
AR+QVWFSNRRA+WR++
Sbjct: 238 ARVQVWFSNRRARWRKQ 254
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Query: 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113
L+RK +RNRT+FT Q++ LE F +THYPDVF RE LA KI L EAR+QVWF NRRAKW
Sbjct: 29 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 88
Query: 114 RREEKLRNQRQRGSADP 130
R+ E+ + ++ G+ +P
Sbjct: 89 RKTERGASDQEPGAKEP 105
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 58/77 (75%)
Query: 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113
L+RK +RNRT+FT Q++ LE F +THYPDVF RE LA KI L EAR+QVWF NRRAKW
Sbjct: 29 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 88
Query: 114 RREEKLRNQRQRGSADP 130
R+ E+ + ++ G+ +P
Sbjct: 89 RKTERGASDQEPGAKEP 105
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 57/77 (74%)
Query: 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113
L+RK +RNRT+F Q++ LE F +THYPDVF RE LA KI L EAR+QVWF NRRAKW
Sbjct: 29 LRRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 88
Query: 114 RREEKLRNQRQRGSADP 130
R+ E+ + ++ G+ +P
Sbjct: 89 RKTERGASDQEPGAKEP 105
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 24 LGSDETCTTIGDNSNPGSNLEPEDDQARLRL-KRKLQRNRTSFTNDQIDNLEKEFERTHY 82
LGS + ++ + + E D + L L KRK +R+RT FT Q++ LEK F HY
Sbjct: 136 LGSQQRSESVSTSDGDSPSEEKNDPKMSLILGKRKKRRHRTVFTAHQLEELEKAFGEAHY 195
Query: 83 PDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
PDV+ARE LAAK LPE RIQVWF NRRAKWR+ EK
Sbjct: 196 PDVYAREMLAAKTELPEDRIQVWFQNRRAKWRKREK 231
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 55/70 (78%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K K +RNRT+FT+ Q++ LEK F++THYPDV+ARE+LA + L EAR+QVWF NRRAKWR
Sbjct: 197 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWR 256
Query: 115 REEKLRNQRQ 124
+ E+ +Q
Sbjct: 257 KRERFGQMQQ 266
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 55/70 (78%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K K +RNRT+FT+ Q++ LEK F++THYPDV+ARE+LA + L EAR+QVWF NRRAKWR
Sbjct: 211 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWR 270
Query: 115 REEKLRNQRQ 124
+ E+ +Q
Sbjct: 271 KRERFGQMQQ 280
>sp|A1A546|ISX_MOUSE Intestine-specific homeobox OS=Mus musculus GN=Isx PE=2 SV=2
Length = 240
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 8/118 (6%)
Query: 39 PGSNLE-PEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGL 97
PGS LE P DQ + K K +R RT+FT +Q+ LEK F THYPD+ R +LA++I L
Sbjct: 59 PGSKLERPPQDQPQEEKKNK-RRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINL 117
Query: 98 PEARIQVWFSNRRAKWRREEKLRNQRQRGSADPTQAPNNNNNNIVNNNNNSSDGCTPS 155
PEAR+Q+WF N+RAKWR++EK G+ Q P + +N + S TP+
Sbjct: 118 PEARVQIWFQNQRAKWRKQEK------SGNLSAPQQPGEAGLALPSNMDVSGPVLTPT 169
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 55/70 (78%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
K K +RNRT+FT+ Q++ LEK F++THYPDV+ARE+LA + L EAR+QVWF NRRAKWR
Sbjct: 199 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWR 258
Query: 115 REEKLRNQRQ 124
+ E+ +Q
Sbjct: 259 KRERFGQMQQ 268
>sp|Q94398|HM08_CAEEL Homeobox protein ceh-8 OS=Caenorhabditis elegans GN=ceh-8 PE=4 SV=3
Length = 276
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 52/63 (82%)
Query: 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+K +RNRT+FT Q+ LE F++THYPDV+ARE LAAK+ LPE R+QVWF NRRAK+RR
Sbjct: 58 KKQRRNRTTFTTFQLHALEAAFDKTHYPDVYARETLAAKVQLPEVRVQVWFQNRRAKFRR 117
Query: 116 EEK 118
+EK
Sbjct: 118 QEK 120
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 94.4 bits (233), Expect = 3e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 12/94 (12%)
Query: 25 GSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPD 84
G D C + G +S G LKRK +R RT+FT+ Q++ LE+ F++THYPD
Sbjct: 307 GEDSVCLSAGSDSEEG------------LLKRKQRRYRTTFTSYQLEELERAFQKTHYPD 354
Query: 85 VFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
VF RE LA ++ L EAR+QVWF NRRAKWR+ EK
Sbjct: 355 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 388
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 47/94 (50%), Positives = 61/94 (64%), Gaps = 12/94 (12%)
Query: 25 GSDETCTTIGDNSNPGSNLEPEDDQARLRLKRKLQRNRTSFTNDQIDNLEKEFERTHYPD 84
G D C + G +S G LKRK +R RT+FT+ Q++ LE+ F++THYPD
Sbjct: 311 GEDSVCLSAGSDSEEG------------LLKRKQRRYRTTFTSYQLEELERAFQKTHYPD 358
Query: 85 VFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
VF RE LA ++ L EAR+QVWF NRRAKWR+ EK
Sbjct: 359 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREK 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,526,265
Number of Sequences: 539616
Number of extensions: 3009788
Number of successful extensions: 67166
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2098
Number of HSP's successfully gapped in prelim test: 153
Number of HSP's that attempted gapping in prelim test: 16638
Number of HSP's gapped (non-prelim): 33072
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)