Query psy4868
Match_columns 169
No_of_seqs 215 out of 1775
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 19:43:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4868.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4868hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.9 2E-21 6.8E-26 129.2 9.1 67 57-123 6-72 (80)
2 2dmt_A Homeobox protein BARH-l 99.8 2.6E-21 8.9E-26 128.7 7.7 62 55-116 14-75 (80)
3 2kt0_A Nanog, homeobox protein 99.8 8.9E-22 3E-26 132.0 4.6 63 55-117 19-81 (84)
4 2h1k_A IPF-1, pancreatic and d 99.8 5.2E-21 1.8E-25 121.6 7.6 60 57-116 2-61 (63)
5 1fjl_A Paired protein; DNA-bin 99.8 5.8E-21 2E-25 127.2 8.1 64 55-118 15-78 (81)
6 2dmq_A LIM/homeobox protein LH 99.8 3.6E-21 1.2E-25 127.9 7.0 62 57-118 6-67 (80)
7 1nk2_P Homeobox protein VND; h 99.8 6.5E-21 2.2E-25 125.9 8.0 64 55-118 6-69 (77)
8 2da3_A Alpha-fetoprotein enhan 99.8 4.2E-21 1.4E-25 127.5 7.0 62 55-116 14-75 (80)
9 2hdd_A Protein (engrailed home 99.8 4.2E-21 1.5E-25 121.3 6.7 58 58-115 3-60 (61)
10 1puf_A HOX-1.7, homeobox prote 99.8 9E-21 3.1E-25 125.2 8.4 65 55-119 10-74 (77)
11 1ig7_A Homeotic protein MSX-1; 99.8 8.6E-21 2.9E-25 118.6 7.6 57 59-115 1-57 (58)
12 2vi6_A Homeobox protein nanog; 99.8 1.9E-21 6.6E-26 123.2 4.7 60 57-116 2-61 (62)
13 2dmu_A Homeobox protein goosec 99.8 8E-21 2.7E-25 123.2 7.6 61 57-117 6-66 (70)
14 2dms_A Homeobox protein OTX2; 99.8 2E-21 6.8E-26 129.2 4.9 63 56-118 5-67 (80)
15 1zq3_P PRD-4, homeotic bicoid 99.8 1.1E-20 3.7E-25 121.9 7.6 61 58-118 2-62 (68)
16 2cra_A Homeobox protein HOX-B1 99.8 4.4E-21 1.5E-25 124.4 5.7 61 56-116 5-65 (70)
17 1wh5_A ZF-HD homeobox family p 99.8 4.3E-21 1.5E-25 127.6 5.7 60 56-115 15-78 (80)
18 2e1o_A Homeobox protein PRH; D 99.8 1.6E-20 5.6E-25 121.7 7.7 61 57-117 6-66 (70)
19 1jgg_A Segmentation protein EV 99.8 1.3E-20 4.3E-25 118.7 6.9 58 59-116 2-59 (60)
20 1ahd_P Antennapedia protein mu 99.8 1.1E-20 3.8E-25 121.9 6.7 61 58-118 2-62 (68)
21 2da2_A Alpha-fetoprotein enhan 99.8 8.7E-21 3E-25 122.9 5.9 61 56-116 5-65 (70)
22 2da1_A Alpha-fetoprotein enhan 99.8 8.8E-21 3E-25 122.9 5.7 62 56-117 5-66 (70)
23 1akh_A Protein (mating-type pr 99.8 1.2E-20 4E-25 119.1 6.0 60 55-114 2-61 (61)
24 1ftt_A TTF-1 HD, thyroid trans 99.8 2.5E-20 8.4E-25 120.2 7.5 61 58-118 2-62 (68)
25 1bw5_A ISL-1HD, insulin gene e 99.8 1.1E-20 3.7E-25 121.2 5.7 60 57-116 2-61 (66)
26 3a01_A Homeodomain-containing 99.8 1.1E-20 3.7E-25 129.2 6.0 65 55-119 14-78 (93)
27 2l7z_A Homeobox protein HOX-A1 99.8 1.6E-20 5.4E-25 122.8 6.5 61 56-116 5-65 (73)
28 1yz8_P Pituitary homeobox 2; D 99.8 5E-21 1.7E-25 123.5 3.9 62 57-118 2-63 (68)
29 3a02_A Homeobox protein arista 99.8 1.5E-20 5.2E-25 118.3 5.9 58 61-118 2-59 (60)
30 2djn_A Homeobox protein DLX-5; 99.8 8.1E-21 2.8E-25 123.2 4.8 61 56-116 5-65 (70)
31 1b8i_A Ultrabithorax, protein 99.8 1.4E-20 4.8E-25 125.4 5.7 62 56-117 18-79 (81)
32 1wh7_A ZF-HD homeobox family p 99.8 1E-20 3.5E-25 125.8 5.0 60 55-115 14-78 (80)
33 2da4_A Hypothetical protein DK 99.8 1.3E-20 4.4E-25 125.3 5.3 61 56-116 6-70 (80)
34 3rkq_A Homeobox protein NKX-2. 99.8 2.7E-20 9.1E-25 116.2 6.2 57 58-114 2-58 (58)
35 2hi3_A Homeodomain-only protei 99.8 5.6E-20 1.9E-24 120.1 7.9 60 59-118 3-63 (73)
36 1uhs_A HOP, homeodomain only p 99.8 5.4E-20 1.8E-24 119.9 7.7 59 59-117 2-61 (72)
37 2r5y_A Homeotic protein sex co 99.8 1.5E-20 5.1E-25 127.1 4.9 62 55-116 25-86 (88)
38 3a03_A T-cell leukemia homeobo 99.8 5.2E-20 1.8E-24 114.3 7.0 54 63-116 2-55 (56)
39 2m0c_A Homeobox protein arista 99.8 3.2E-20 1.1E-24 121.7 6.1 64 55-118 6-69 (75)
40 2ecc_A Homeobox and leucine zi 99.8 7E-20 2.4E-24 120.1 7.5 56 61-116 6-61 (76)
41 2k40_A Homeobox expressed in E 99.8 5.2E-20 1.8E-24 118.3 6.3 59 59-117 2-60 (67)
42 1b72_A Protein (homeobox prote 99.8 6.2E-20 2.1E-24 126.2 6.9 63 56-118 32-94 (97)
43 2ecb_A Zinc fingers and homeob 99.8 2.3E-20 8E-25 126.2 4.7 55 64-118 17-71 (89)
44 2cuf_A FLJ21616 protein; homeo 99.8 4.7E-20 1.6E-24 126.4 6.0 64 55-118 4-82 (95)
45 3nar_A ZHX1, zinc fingers and 99.8 8.8E-20 3E-24 125.3 6.4 63 55-117 22-84 (96)
46 2da6_A Hepatocyte nuclear fact 99.8 2.7E-19 9.4E-24 123.3 8.8 67 56-122 4-91 (102)
47 2ly9_A Zinc fingers and homeob 99.8 1.1E-19 3.7E-24 119.0 5.6 60 58-117 6-65 (74)
48 2da5_A Zinc fingers and homeob 99.8 2.5E-19 8.4E-24 117.7 6.9 58 60-117 9-66 (75)
49 1b72_B Protein (PBX1); homeodo 99.8 1.2E-19 4.1E-24 122.3 5.6 62 59-120 2-66 (87)
50 1x2n_A Homeobox protein pknox1 99.8 3.6E-19 1.2E-23 116.2 7.5 62 56-117 5-69 (73)
51 1puf_B PRE-B-cell leukemia tra 99.8 4.6E-19 1.6E-23 115.7 7.1 60 59-118 2-64 (73)
52 2dn0_A Zinc fingers and homeob 99.8 1.9E-19 6.3E-24 118.5 5.1 59 59-117 9-67 (76)
53 2dmn_A Homeobox protein TGIF2L 99.8 1.4E-18 4.7E-23 116.3 9.0 62 57-118 6-70 (83)
54 1k61_A Mating-type protein alp 99.8 5.6E-19 1.9E-23 111.0 6.6 54 62-115 2-58 (60)
55 1du6_A PBX1, homeobox protein 99.8 1.5E-19 5.2E-24 115.1 3.2 58 58-115 3-63 (64)
56 3nau_A Zinc fingers and homeob 99.8 1.3E-18 4.5E-23 110.5 7.0 53 65-117 11-63 (66)
57 1wi3_A DNA-binding protein SAT 99.8 9.1E-19 3.1E-23 111.2 6.1 58 56-113 5-63 (71)
58 1mnm_C Protein (MAT alpha-2 tr 99.8 1.3E-18 4.5E-23 117.3 6.9 59 56-114 25-86 (87)
59 2cqx_A LAG1 longevity assuranc 99.8 2.5E-19 8.4E-24 116.8 2.9 57 59-115 9-66 (72)
60 1le8_B Mating-type protein alp 99.8 1.3E-18 4.6E-23 116.3 6.4 58 59-116 3-63 (83)
61 2dmp_A Zinc fingers and homeob 99.8 5.8E-19 2E-23 119.6 4.5 56 63-118 18-73 (89)
62 2xsd_C POU domain, class 3, tr 99.7 7.8E-19 2.7E-23 131.5 5.6 64 55-118 96-159 (164)
63 1e3o_C Octamer-binding transcr 99.7 1E-18 3.6E-23 130.3 6.1 62 55-116 98-159 (160)
64 1lfb_A Liver transcription fac 99.7 4.3E-19 1.5E-23 122.3 3.3 65 54-118 5-90 (99)
65 1au7_A Protein PIT-1, GHF-1; c 99.7 1.5E-18 5.1E-23 127.7 6.0 62 55-116 84-145 (146)
66 3d1n_I POU domain, class 6, tr 99.7 2.2E-18 7.6E-23 127.4 6.2 61 55-115 90-150 (151)
67 2l9r_A Homeobox protein NKX-3. 99.7 2.5E-18 8.6E-23 111.0 5.2 55 63-117 9-63 (69)
68 1x2m_A LAG1 longevity assuranc 99.7 1.8E-18 6.1E-23 109.8 3.8 49 67-115 9-58 (64)
69 2e19_A Transcription factor 8; 99.7 3.3E-18 1.1E-22 109.0 4.7 53 63-115 8-60 (64)
70 3l1p_A POU domain, class 5, tr 99.7 4E-18 1.4E-22 126.5 5.0 61 56-116 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.7 1.3E-17 4.6E-22 124.6 5.2 63 55-117 94-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 9.8E-17 3.3E-21 103.0 5.9 56 63-118 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 1.4E-16 4.8E-21 122.0 3.7 61 55-115 112-193 (194)
74 2lk2_A Homeobox protein TGIF1; 99.6 1.4E-14 4.8E-19 97.3 9.2 57 63-119 10-69 (89)
75 2da7_A Zinc finger homeobox pr 99.6 3.7E-15 1.3E-19 95.2 5.5 46 67-112 14-59 (71)
76 2h8r_A Hepatocyte nuclear fact 99.6 3.4E-15 1.1E-19 115.7 5.5 61 53-113 137-218 (221)
77 1mh3_A Maltose binding-A1 home 99.4 1.1E-13 3.9E-18 115.3 3.5 58 57-114 364-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 1.7E-10 5.7E-15 64.8 -0.5 21 100-120 1-21 (37)
79 2ys9_A Homeobox and leucine zi 96.8 0.0014 4.7E-08 41.4 3.9 38 70-107 18-55 (70)
80 2glo_A Brinker CG9653-PA; prot 88.9 0.84 2.9E-05 27.0 4.7 46 62-108 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 88.2 1.6 5.5E-05 27.9 6.1 45 58-107 16-60 (87)
82 1hlv_A CENP-B, major centromer 86.8 1.8 6.3E-05 29.3 6.2 48 61-111 4-51 (131)
83 3hug_A RNA polymerase sigma fa 85.4 2.2 7.5E-05 27.3 5.6 49 64-117 37-85 (92)
84 1p4w_A RCSB; solution structur 83.3 5.4 0.00018 26.2 6.9 49 60-114 30-78 (99)
85 1tc3_C Protein (TC3 transposas 78.8 4.4 0.00015 21.8 4.6 40 64-108 5-44 (51)
86 2o8x_A Probable RNA polymerase 78.3 3.1 0.0001 24.7 4.0 47 64-115 15-61 (70)
87 2jn6_A Protein CGL2762, transp 76.4 5.4 0.00019 25.6 5.1 42 62-107 3-45 (97)
88 3c57_A Two component transcrip 74.9 4.1 0.00014 26.3 4.2 46 63-114 26-71 (95)
89 1s7o_A Hypothetical UPF0122 pr 74.7 6.7 0.00023 26.4 5.3 48 64-116 22-69 (113)
90 1jko_C HIN recombinase, DNA-in 74.3 2 6.8E-05 23.7 2.2 41 65-110 6-46 (52)
91 1je8_A Nitrate/nitrite respons 72.4 5.3 0.00018 25.0 4.1 47 63-115 20-66 (82)
92 1ku3_A Sigma factor SIGA; heli 72.1 7.3 0.00025 23.5 4.7 50 64-114 10-59 (73)
93 3mzy_A RNA polymerase sigma-H 71.4 8.8 0.0003 26.2 5.5 48 64-117 109-156 (164)
94 1fse_A GERE; helix-turn-helix 70.1 8.1 0.00028 23.0 4.5 47 62-114 9-55 (74)
95 1xsv_A Hypothetical UPF0122 pr 69.4 11 0.00038 25.2 5.4 49 64-117 25-73 (113)
96 2rn7_A IS629 ORFA; helix, all 68.3 13 0.00044 24.1 5.6 46 62-107 4-52 (108)
97 2p7v_B Sigma-70, RNA polymeras 67.3 6.6 0.00023 23.4 3.6 50 64-114 5-54 (68)
98 1x3u_A Transcriptional regulat 66.6 6.4 0.00022 23.9 3.5 45 65-115 17-61 (79)
99 1iuf_A Centromere ABP1 protein 64.7 8 0.00027 27.0 4.1 50 59-108 6-59 (144)
100 1rp3_A RNA polymerase sigma fa 63.9 9.2 0.00031 28.0 4.6 48 64-116 187-234 (239)
101 3ulq_B Transcriptional regulat 63.5 16 0.00054 23.3 5.1 47 61-113 26-72 (90)
102 1tty_A Sigma-A, RNA polymerase 63.5 7.6 0.00026 24.5 3.5 50 64-114 18-67 (87)
103 1or7_A Sigma-24, RNA polymeras 63.1 12 0.00042 26.5 5.0 47 65-116 141-187 (194)
104 2rnj_A Response regulator prot 62.5 5.9 0.0002 25.2 2.8 47 63-115 28-74 (91)
105 1fi6_A EH domain protein REPS1 57.1 15 0.0005 23.1 4.1 44 64-107 2-50 (92)
106 2lv7_A Calcium-binding protein 57.0 15 0.00052 23.7 4.2 46 62-107 27-79 (100)
107 2x48_A CAG38821; archeal virus 56.5 14 0.00048 20.7 3.5 36 67-107 18-53 (55)
108 2pmy_A RAS and EF-hand domain- 56.1 12 0.00041 23.2 3.5 45 63-107 19-68 (91)
109 2hin_A GP39, repressor protein 55.2 9.9 0.00034 23.5 2.8 31 88-118 13-43 (71)
110 2jpc_A SSRB; DNA binding prote 54.9 8.8 0.0003 22.0 2.5 28 88-115 16-43 (61)
111 3t72_q RNA polymerase sigma fa 53.7 40 0.0014 22.0 5.8 54 64-118 19-72 (99)
112 2q24_A Putative TETR family tr 52.7 10 0.00034 26.6 3.0 42 70-113 21-62 (194)
113 3bd1_A CRO protein; transcript 51.1 7.9 0.00027 23.6 1.9 24 88-111 14-37 (79)
114 2xi8_A Putative transcription 50.8 7.8 0.00027 22.2 1.8 23 88-110 17-39 (66)
115 3i5g_B Myosin regulatory light 50.7 42 0.0014 23.0 6.0 40 61-100 6-50 (153)
116 1irz_A ARR10-B; helix-turn-hel 50.2 40 0.0014 20.4 5.2 57 59-115 4-62 (64)
117 2r1j_L Repressor protein C2; p 49.7 8.5 0.00029 22.2 1.8 24 88-111 21-44 (68)
118 3fmy_A HTH-type transcriptiona 49.1 19 0.00066 21.5 3.5 42 63-111 9-50 (73)
119 2q0o_A Probable transcriptiona 47.8 31 0.0011 25.6 5.2 47 62-114 173-219 (236)
120 1u78_A TC3 transposase, transp 47.6 21 0.00073 23.8 3.9 41 63-108 5-45 (141)
121 1c07_A Protein (epidermal grow 47.4 18 0.0006 22.9 3.3 43 65-107 4-51 (95)
122 3bs3_A Putative DNA-binding pr 47.1 9.9 0.00034 22.5 1.9 24 88-111 26-49 (76)
123 1zug_A Phage 434 CRO protein; 47.0 9.4 0.00032 22.3 1.7 24 88-111 19-42 (71)
124 3fiw_A Putative TETR-family tr 46.6 14 0.00048 26.9 3.0 54 60-114 20-74 (211)
125 3omt_A Uncharacterized protein 45.0 11 0.00039 22.3 1.9 23 88-110 24-46 (73)
126 2q1z_A RPOE, ECF SIGE; ECF sig 44.2 7.7 0.00026 27.3 1.2 46 65-115 136-181 (184)
127 1adr_A P22 C2 repressor; trans 44.1 11 0.00039 22.2 1.8 24 88-111 21-44 (76)
128 2b5a_A C.BCLI; helix-turn-heli 43.5 12 0.00041 22.2 1.8 23 88-110 26-48 (77)
129 1r69_A Repressor protein CI; g 43.0 12 0.00041 21.6 1.8 24 88-111 17-40 (69)
130 2rgt_A Fusion of LIM/homeobox 42.4 0.2 6.9E-06 36.4 -7.7 30 56-85 134-163 (169)
131 3o9x_A Uncharacterized HTH-typ 42.4 24 0.00082 23.7 3.5 42 63-111 69-110 (133)
132 3clo_A Transcriptional regulat 42.3 23 0.00078 26.8 3.7 48 63-116 196-243 (258)
133 3kz3_A Repressor protein CI; f 41.9 13 0.00045 22.5 1.9 24 88-111 28-51 (80)
134 1l3l_A Transcriptional activat 41.7 45 0.0015 24.7 5.2 47 62-114 171-217 (234)
135 1rzs_A Antirepressor, regulato 41.1 14 0.00049 21.6 1.9 19 88-106 13-31 (61)
136 3lph_A Protein REV; helix-loop 40.5 25 0.00086 21.8 2.9 37 70-120 18-54 (72)
137 1y7y_A C.AHDI; helix-turn-heli 40.0 15 0.0005 21.5 1.8 23 88-110 29-51 (74)
138 2qwt_A Transcriptional regulat 39.9 21 0.00073 25.1 3.0 42 70-113 19-60 (196)
139 3b7h_A Prophage LP1 protein 11 39.8 15 0.00051 21.8 1.8 23 88-110 23-45 (78)
140 2a6c_A Helix-turn-helix motif; 39.6 17 0.00057 22.4 2.1 23 88-110 34-56 (83)
141 2kpj_A SOS-response transcript 39.5 14 0.00049 23.2 1.8 24 88-111 25-48 (94)
142 1pdn_C Protein (PRD paired); p 39.0 75 0.0026 20.3 5.9 39 64-107 17-55 (128)
143 3q0w_A HTH-type transcriptiona 38.7 17 0.00059 26.4 2.4 44 70-114 50-93 (236)
144 1j7q_A CAVP, calcium vector pr 38.7 55 0.0019 19.4 4.5 44 63-106 6-59 (86)
145 2lfw_A PHYR sigma-like domain; 38.6 18 0.0006 25.1 2.3 46 64-114 93-138 (157)
146 2wiu_B HTH-type transcriptiona 38.4 20 0.00067 21.9 2.3 24 88-111 28-51 (88)
147 1dtl_A Cardiac troponin C; hel 38.0 66 0.0023 21.2 5.3 45 63-107 10-62 (161)
148 2qko_A Possible transcriptiona 37.9 15 0.00051 26.2 1.9 44 70-114 34-77 (215)
149 2k27_A Paired box protein PAX- 37.0 37 0.0013 23.5 3.8 41 63-108 24-64 (159)
150 2opo_A Polcalcin CHE A 3; calc 36.4 49 0.0017 19.6 4.0 44 64-107 4-53 (86)
151 1u78_A TC3 transposase, transp 36.1 78 0.0027 20.8 5.4 44 64-111 60-105 (141)
152 2fq4_A Transcriptional regulat 36.0 29 0.00098 24.2 3.2 43 70-113 18-60 (192)
153 2ktg_A Calmodulin, putative; e 35.6 55 0.0019 19.3 4.1 45 63-107 6-57 (85)
154 2ef8_A C.ECOT38IS, putative tr 35.2 19 0.00066 21.6 1.9 23 88-110 26-48 (84)
155 2ict_A Antitoxin HIGA; helix-t 34.9 19 0.00066 22.5 1.9 23 88-110 24-46 (94)
156 2hxi_A Putative transcriptiona 34.4 31 0.0011 25.6 3.3 52 62-114 26-78 (241)
157 1eh2_A EPS15; calcium binding, 34.3 84 0.0029 20.3 5.1 44 63-106 7-54 (106)
158 1j9i_A GPNU1 DBD;, terminase s 34.1 27 0.00091 20.7 2.4 21 88-108 5-25 (68)
159 3qp6_A CVIR transcriptional re 34.0 70 0.0024 24.3 5.3 46 63-114 196-241 (265)
160 2rek_A Putative TETR-family tr 34.0 22 0.00077 24.8 2.3 42 70-113 22-63 (199)
161 1avs_A Troponin C; muscle cont 33.9 71 0.0024 19.1 4.5 44 64-107 13-63 (90)
162 2k9q_A Uncharacterized protein 33.9 19 0.00066 21.5 1.7 23 88-110 18-40 (77)
163 3f6w_A XRE-family like protein 33.8 21 0.0007 21.6 1.8 23 88-110 30-52 (83)
164 2jml_A DNA binding domain/tran 33.4 21 0.00071 22.1 1.8 19 88-106 8-26 (81)
165 2k27_A Paired box protein PAX- 33.4 76 0.0026 21.7 5.1 46 63-108 82-134 (159)
166 2hku_A A putative transcriptio 32.1 25 0.00085 24.9 2.3 43 70-114 26-68 (215)
167 3t76_A VANU, transcriptional r 31.7 32 0.0011 21.8 2.5 23 88-110 40-62 (88)
168 1lmb_3 Protein (lambda repress 31.6 23 0.00079 21.8 1.8 23 88-110 33-55 (92)
169 1l0o_C Sigma factor; bergerat 31.4 10 0.00034 27.7 0.0 43 65-112 199-241 (243)
170 2joj_A Centrin protein; N-term 31.1 61 0.0021 18.6 3.7 42 65-106 1-49 (77)
171 3lsg_A Two-component response 30.9 43 0.0015 21.2 3.1 24 86-109 20-43 (103)
172 2kvr_A Ubiquitin carboxyl-term 30.6 12 0.00041 26.0 0.3 23 88-110 72-94 (130)
173 3c3w_A Two component transcrip 29.8 51 0.0017 23.8 3.7 46 63-114 148-193 (225)
174 3szt_A QCSR, quorum-sensing co 29.7 89 0.0031 23.1 5.2 47 61-113 172-218 (237)
175 1x57_A Endothelial differentia 29.7 25 0.00087 21.7 1.8 23 88-110 29-51 (91)
176 2l49_A C protein; P2 bacteriop 29.6 27 0.00092 21.9 1.9 24 88-111 20-43 (99)
177 3dcf_A Transcriptional regulat 29.5 27 0.00091 24.5 2.1 42 70-112 37-78 (218)
178 3s8q_A R-M controller protein; 29.4 26 0.0009 21.1 1.8 23 88-110 27-49 (82)
179 3qq6_A HTH-type transcriptiona 29.4 26 0.0009 21.2 1.8 21 88-108 26-46 (78)
180 2pz9_A Putative regulatory pro 29.0 16 0.00056 26.3 0.8 44 70-114 36-79 (226)
181 3bni_A Putative TETR-family tr 28.7 18 0.0006 26.3 1.0 42 70-112 49-90 (229)
182 3jsj_A Putative TETR-family tr 28.7 39 0.0013 23.2 2.8 45 69-115 14-58 (190)
183 2qtq_A Transcriptional regulat 28.5 46 0.0016 23.1 3.2 44 70-114 22-65 (213)
184 2lhi_A Calmodulin, serine/thre 27.8 38 0.0013 23.8 2.7 38 62-99 2-44 (176)
185 3g1o_A Transcriptional regulat 27.7 23 0.00079 26.1 1.5 44 70-114 49-92 (255)
186 1wdc_B Scallop myosin; calcium 27.5 1.2E+02 0.0041 19.9 5.2 46 63-108 10-62 (156)
187 2pij_A Prophage PFL 6 CRO; tra 27.2 33 0.0011 19.7 1.9 21 88-108 16-36 (67)
188 2i10_A Putative TETR transcrip 27.1 66 0.0023 22.5 3.9 45 69-114 16-60 (202)
189 2zcx_A SCO7815, TETR-family tr 27.0 26 0.0009 25.6 1.7 44 70-114 29-72 (231)
190 1t33_A Putative transcriptiona 27.0 34 0.0012 24.2 2.3 43 70-114 18-60 (224)
191 2mys_B Myosin; muscle protein, 26.6 1.1E+02 0.0037 20.4 4.8 44 64-107 18-69 (166)
192 2hxo_A Putative TETR-family tr 26.5 68 0.0023 23.6 4.0 53 61-114 12-65 (237)
193 3i5g_C Myosin catalytic light 26.5 62 0.0021 22.2 3.5 42 64-105 2-52 (159)
194 3i9v_2 NADH-quinone oxidoreduc 26.4 84 0.0029 22.8 4.3 35 68-102 26-60 (181)
195 2g7l_A TETR-family transcripti 26.3 62 0.0021 24.0 3.7 52 61-113 15-67 (243)
196 2cqq_A RSGI RUH-037, DNAJ homo 26.3 1.2E+02 0.0039 18.6 5.1 44 62-105 8-51 (72)
197 1k78_A Paired box protein PAX5 26.1 1.5E+02 0.0051 19.8 6.1 48 62-109 88-142 (149)
198 2ppx_A AGR_C_3184P, uncharacte 26.0 34 0.0011 21.7 1.9 24 88-111 46-69 (99)
199 3vpr_A Transcriptional regulat 25.7 52 0.0018 22.6 3.1 43 70-113 9-51 (190)
200 2zcm_A Biofilm operon icaabcd 25.6 54 0.0018 22.5 3.1 44 70-114 13-56 (192)
201 2xdn_A HTH-type transcriptiona 25.6 52 0.0018 23.1 3.0 44 70-114 17-60 (210)
202 3bqz_B HTH-type transcriptiona 25.5 55 0.0019 22.3 3.1 43 70-113 8-50 (194)
203 2ewt_A BLDD, putative DNA-bind 25.5 36 0.0012 19.6 1.8 23 88-110 24-48 (71)
204 3ppb_A Putative TETR family tr 25.4 55 0.0019 22.2 3.1 43 70-113 15-57 (195)
205 3dew_A Transcriptional regulat 25.4 31 0.0011 23.7 1.8 44 70-114 14-57 (206)
206 3bdn_A Lambda repressor; repre 25.4 37 0.0013 25.0 2.3 22 88-109 33-54 (236)
207 3rd3_A Probable transcriptiona 25.3 35 0.0012 23.4 2.0 42 70-112 16-57 (197)
208 2v79_A DNA replication protein 25.3 96 0.0033 21.2 4.3 41 65-108 30-74 (135)
209 2ofy_A Putative XRE-family tra 25.2 35 0.0012 20.7 1.8 23 88-110 30-52 (86)
210 3ccy_A Putative TETR-family tr 25.2 54 0.0018 22.8 3.1 44 70-114 20-63 (203)
211 1ity_A TRF1; helix-turn-helix, 25.1 1.1E+02 0.0039 18.0 4.3 49 55-106 3-54 (69)
212 3op9_A PLI0006 protein; struct 25.1 34 0.0012 22.1 1.8 23 88-110 25-47 (114)
213 1uxc_A FRUR (1-57), fructose r 24.9 39 0.0013 20.1 1.9 23 88-110 3-25 (65)
214 3qbm_A TETR transcriptional re 24.9 48 0.0016 22.7 2.7 43 70-113 13-55 (199)
215 2jrt_A Uncharacterized protein 24.6 1.4E+02 0.0049 19.1 5.4 41 62-107 30-71 (95)
216 2np5_A Transcriptional regulat 24.4 32 0.0011 24.2 1.7 44 70-114 15-58 (203)
217 1a04_A Nitrate/nitrite respons 24.4 91 0.0031 21.9 4.2 46 63-114 153-198 (215)
218 2kgr_A Intersectin-1; structur 24.2 80 0.0027 20.4 3.6 45 63-107 6-55 (111)
219 2kn2_A Calmodulin; S MAPK phos 24.2 84 0.0029 18.8 3.5 40 67-106 5-51 (92)
220 3qrx_A Centrin; calcium-bindin 24.0 1.1E+02 0.0037 20.4 4.4 48 59-106 16-70 (169)
221 2ovk_B RLC, myosin regulatory 23.9 1.1E+02 0.0036 20.1 4.3 46 62-107 7-59 (153)
222 3fwb_A Cell division control p 23.9 1.3E+02 0.0046 19.5 4.9 46 61-106 13-65 (161)
223 2mys_C Myosin; muscle protein, 23.8 1.3E+02 0.0045 19.2 4.8 42 65-106 2-50 (149)
224 2hyt_A TETR-family transcripti 23.7 63 0.0022 22.4 3.2 43 70-113 18-60 (197)
225 3f0c_A TETR-molecule A, transc 23.6 48 0.0016 23.2 2.5 43 70-113 17-59 (216)
226 2rae_A Transcriptional regulat 23.6 59 0.002 22.5 3.0 41 70-111 23-63 (207)
227 3gzi_A Transcriptional regulat 23.5 62 0.0021 22.6 3.1 42 71-113 24-65 (218)
228 3nxc_A HTH-type protein SLMA; 23.4 31 0.0011 24.1 1.5 36 76-112 37-72 (212)
229 3kz9_A SMCR; transcriptional r 23.2 61 0.0021 22.2 3.0 43 70-113 23-65 (206)
230 3vib_A MTRR; helix-turn-helix 23.2 58 0.002 22.8 2.9 44 70-114 16-59 (210)
231 3bru_A Regulatory protein, TET 23.2 61 0.0021 22.7 3.0 42 70-112 36-77 (222)
232 2yve_A Transcriptional regulat 23.0 63 0.0022 22.3 3.0 44 70-114 10-53 (185)
233 3he0_A Transcriptional regulat 22.9 60 0.002 22.2 2.9 46 68-114 15-60 (196)
234 3lwj_A Putative TETR-family tr 22.7 61 0.0021 22.3 2.9 43 70-113 18-60 (202)
235 2iu5_A DHAS, YCEG, HTH-type dh 22.4 51 0.0017 22.8 2.4 45 70-115 19-63 (195)
236 2d6y_A Putative TETR family re 22.3 67 0.0023 22.5 3.1 44 70-114 14-57 (202)
237 2w53_A Repressor, SMet; antibi 22.3 53 0.0018 23.2 2.6 44 70-114 17-60 (219)
238 2jvl_A TRMBF1; coactivator, he 22.2 43 0.0015 21.7 1.8 24 88-111 52-75 (107)
239 3eus_A DNA-binding protein; st 22.2 46 0.0016 20.4 1.9 23 88-110 30-52 (86)
240 3mlf_A Transcriptional regulat 22.2 42 0.0014 21.9 1.8 23 88-110 39-61 (111)
241 3knw_A Putative transcriptiona 22.0 64 0.0022 22.3 2.9 42 70-112 20-61 (212)
242 1sgm_A Putative HTH-type trans 22.0 68 0.0023 21.7 3.0 41 70-111 12-53 (191)
243 3u0k_A Rcamp; fluorescent prot 21.9 1E+02 0.0036 25.8 4.5 47 60-106 291-344 (440)
244 3vk0_A NHTF, transcriptional r 21.7 43 0.0015 21.8 1.8 23 88-110 37-59 (114)
245 3b81_A Transcriptional regulat 21.7 60 0.0021 22.3 2.7 44 70-114 17-60 (203)
246 2vz4_A Tipal, HTH-type transcr 21.6 52 0.0018 21.4 2.2 19 88-106 4-22 (108)
247 1neq_A DNA-binding protein NER 21.5 53 0.0018 20.0 2.1 21 88-108 25-45 (74)
248 1r8d_A Transcription activator 21.5 51 0.0018 21.5 2.1 19 88-106 5-23 (109)
249 1pb6_A Hypothetical transcript 21.4 69 0.0024 22.2 3.0 44 70-114 24-67 (212)
250 3f1b_A TETR-like transcription 21.3 68 0.0023 21.9 2.9 44 70-114 20-63 (203)
251 1b0n_A Protein (SINR protein); 21.3 46 0.0016 21.1 1.8 21 88-108 17-37 (111)
252 2l8n_A Transcriptional repress 21.2 54 0.0019 19.6 2.0 23 88-110 12-34 (67)
253 3g5g_A Regulatory protein; tra 21.2 47 0.0016 21.2 1.8 23 88-110 44-66 (99)
254 3cdl_A Transcriptional regulat 21.2 63 0.0022 22.5 2.8 45 70-115 15-59 (203)
255 2fd5_A Transcriptional regulat 21.1 78 0.0027 21.4 3.2 44 70-114 13-56 (180)
256 3lhq_A Acrab operon repressor 21.1 69 0.0023 22.1 2.9 42 70-112 20-61 (220)
257 3qkx_A Uncharacterized HTH-typ 21.0 74 0.0025 21.4 3.0 44 70-114 14-57 (188)
258 3aqt_A Bacterial regulatory pr 21.0 54 0.0018 23.9 2.4 44 70-114 52-95 (245)
259 2ao9_A Phage protein; structur 21.0 92 0.0031 22.2 3.5 45 64-108 23-71 (155)
260 2gqb_A Conserved hypothetical 21.0 1.2E+02 0.0041 21.0 3.9 29 81-109 79-112 (130)
261 2wui_A MEXZ, transcriptional r 20.9 71 0.0024 22.4 3.0 44 70-114 17-60 (210)
262 2o7t_A Transcriptional regulat 20.9 54 0.0019 22.7 2.3 43 70-113 14-56 (199)
263 2ras_A Transcriptional regulat 20.7 58 0.002 22.7 2.5 43 70-113 17-59 (212)
264 3fia_A Intersectin-1; EH 1 dom 20.6 1.8E+02 0.0061 19.6 4.8 44 62-105 24-72 (121)
265 2v57_A TETR family transcripti 20.6 47 0.0016 22.7 1.9 38 73-113 23-60 (190)
266 2eby_A Putative HTH-type trans 20.6 48 0.0016 21.3 1.8 23 88-110 27-49 (113)
267 2dg8_A Putative TETR-family tr 20.5 55 0.0019 22.6 2.3 44 70-114 15-58 (193)
268 3ivp_A Putative transposon-rel 20.5 45 0.0015 22.0 1.7 23 88-110 28-50 (126)
269 1vi0_A Transcriptional regulat 20.4 53 0.0018 23.1 2.2 44 70-114 14-57 (206)
270 1ug2_A 2610100B20RIK gene prod 20.4 1.7E+02 0.0057 19.1 4.3 45 62-107 33-78 (95)
271 3cec_A Putative antidote prote 20.4 49 0.0017 20.9 1.8 23 88-110 34-56 (104)
272 2dg7_A Putative transcriptiona 20.3 55 0.0019 22.5 2.2 41 70-111 13-53 (195)
273 3f52_A CLP gene regulator (CLG 20.3 50 0.0017 21.4 1.9 23 88-110 44-66 (117)
274 3anp_C Transcriptional repress 20.2 70 0.0024 22.2 2.8 43 70-113 15-57 (204)
275 3crj_A Transcription regulator 20.2 66 0.0023 22.4 2.7 44 70-114 20-63 (199)
276 2eh3_A Transcriptional regulat 20.0 76 0.0026 21.5 2.9 43 70-113 8-50 (179)
277 3g7r_A Putative transcriptiona 20.0 76 0.0026 22.5 3.0 43 70-113 41-83 (221)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2e-21 Score=129.23 Aligned_cols=67 Identities=90% Similarity=1.326 Sum_probs=62.6
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHHHHHh
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLRNQR 123 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~~~ 123 (169)
+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..+.....
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 4578899999999999999999999999999999999999999999999999999999988876654
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=128.67 Aligned_cols=62 Identities=39% Similarity=0.722 Sum_probs=58.8
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.++.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.||++||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 3
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=8.9e-22 Score=132.00 Aligned_cols=63 Identities=29% Similarity=0.498 Sum_probs=59.3
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
..+.++.|+.|+..|+.+|+.+|..++||+..++..||..|||++.+|+|||||||+|+|+.+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999999999999999999999998753
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.84 E-value=5.2e-21 Score=121.63 Aligned_cols=60 Identities=42% Similarity=0.700 Sum_probs=55.7
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 357889999999999999999999999999999999999999999999999999999985
No 5
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.84 E-value=5.8e-21 Score=127.22 Aligned_cols=64 Identities=56% Similarity=1.011 Sum_probs=59.5
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.++.++.|+.|+..|+.+|+.+|..++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 5677889999999999999999999999999999999999999999999999999999998764
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=127.89 Aligned_cols=62 Identities=40% Similarity=0.618 Sum_probs=58.9
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
+.++.|+.|+..|+.+|+.+|..++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999998654
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.84 E-value=6.5e-21 Score=125.86 Aligned_cols=64 Identities=33% Similarity=0.569 Sum_probs=60.0
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+...
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 4556888999999999999999999999999999999999999999999999999999998655
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.84 E-value=4.2e-21 Score=127.50 Aligned_cols=62 Identities=29% Similarity=0.496 Sum_probs=58.6
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
..+.++.|+.|+.+|+.+|+.+|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 34668899999999999999999999999999999999999999999999999999999874
No 9
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.84 E-value=4.2e-21 Score=121.25 Aligned_cols=58 Identities=38% Similarity=0.774 Sum_probs=53.1
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
.++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778999999999999999999999999999999999999999999999999999986
No 10
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.84 E-value=9e-21 Score=125.16 Aligned_cols=65 Identities=32% Similarity=0.492 Sum_probs=60.8
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 119 (169)
.++.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567889999999999999999999999999999999999999999999999999999998764
No 11
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=8.6e-21 Score=118.60 Aligned_cols=57 Identities=35% Similarity=0.728 Sum_probs=55.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 477999999999999999999999999999999999999999999999999999987
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.83 E-value=1.9e-21 Score=123.24 Aligned_cols=60 Identities=27% Similarity=0.515 Sum_probs=52.8
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 457889999999999999999999999999999999999999999999999999999874
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8e-21 Score=123.17 Aligned_cols=61 Identities=52% Similarity=0.921 Sum_probs=57.8
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4578899999999999999999999999999999999999999999999999999999853
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=2e-21 Score=129.19 Aligned_cols=63 Identities=54% Similarity=0.926 Sum_probs=59.1
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|+|++.+|++||||||+|+|+..+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 456889999999999999999999999999999999999999999999999999999998543
No 15
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.1e-20 Score=121.93 Aligned_cols=61 Identities=34% Similarity=0.608 Sum_probs=58.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999998765
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=4.4e-21 Score=124.45 Aligned_cols=61 Identities=26% Similarity=0.562 Sum_probs=57.7
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 3467889999999999999999999999999999999999999999999999999999874
No 17
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.83 E-value=4.3e-21 Score=127.64 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=56.8
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFER----THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
.+++|.||.|+.+|+..|+..|.. ++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 467889999999999999999999 999999999999999999999999999999999764
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.6e-20 Score=121.73 Aligned_cols=61 Identities=43% Similarity=0.717 Sum_probs=57.5
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3467899999999999999999999999999999999999999999999999999999854
No 19
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=1.3e-20 Score=118.69 Aligned_cols=58 Identities=50% Similarity=0.791 Sum_probs=55.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 20
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.82 E-value=1.1e-20 Score=121.87 Aligned_cols=61 Identities=39% Similarity=0.685 Sum_probs=57.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
+++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 4678999999999999999999999999999999999999999999999999999998543
No 21
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-21 Score=122.95 Aligned_cols=61 Identities=34% Similarity=0.520 Sum_probs=57.8
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4567889999999999999999999999999999999999999999999999999999874
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.82 E-value=8.8e-21 Score=122.94 Aligned_cols=62 Identities=32% Similarity=0.456 Sum_probs=58.3
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678999999999999999999999999999999999999999999999999999998743
No 23
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=1.2e-20 Score=119.13 Aligned_cols=60 Identities=27% Similarity=0.481 Sum_probs=48.5
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+.+.++.|+.|+..|+.+|+.+|..++||+..++..||..+||++.||++||||||+++|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356778899999999999999999999999999999999999999999999999999975
No 24
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=2.5e-20 Score=120.25 Aligned_cols=61 Identities=33% Similarity=0.628 Sum_probs=57.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
+++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4778999999999999999999999999999999999999999999999999999998543
No 25
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=121.21 Aligned_cols=60 Identities=32% Similarity=0.566 Sum_probs=57.1
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
+.++.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 457889999999999999999999999999999999999999999999999999999864
No 26
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=1.1e-20 Score=129.15 Aligned_cols=65 Identities=38% Similarity=0.684 Sum_probs=60.5
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 119 (169)
..+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34567889999999999999999999999999999999999999999999999999999987653
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.82 E-value=1.6e-20 Score=122.78 Aligned_cols=61 Identities=28% Similarity=0.553 Sum_probs=58.0
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 4568889999999999999999999999999999999999999999999999999999874
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.82 E-value=5e-21 Score=123.51 Aligned_cols=62 Identities=50% Similarity=0.924 Sum_probs=58.7
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
+.++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45788999999999999999999999999999999999999999999999999999998654
No 29
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.82 E-value=1.5e-20 Score=118.33 Aligned_cols=58 Identities=69% Similarity=1.166 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 61 NRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.|+.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998764
No 30
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=123.16 Aligned_cols=61 Identities=30% Similarity=0.650 Sum_probs=57.6
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3457889999999999999999999999999999999999999999999999999999873
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.82 E-value=1.4e-20 Score=125.43 Aligned_cols=62 Identities=37% Similarity=0.586 Sum_probs=54.4
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34577899999999999999999999999999999999999999999999999999999854
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1e-20 Score=125.79 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=55.8
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..+++|.||.|+.+|+..|+ .|.. ++||+..++++||..|||++.||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34568899999999999999 7999 999999999999999999999999999999999864
No 33
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-20 Score=125.27 Aligned_cols=61 Identities=21% Similarity=0.351 Sum_probs=58.0
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERT----HYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~----~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+.++.|+.|+.+|+.+|+.+|..+ +||+..++.+||..|||++.+|+|||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4568889999999999999999999 999999999999999999999999999999999883
No 34
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=116.16 Aligned_cols=57 Identities=30% Similarity=0.616 Sum_probs=54.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999974
No 35
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=5.6e-20 Score=120.13 Aligned_cols=60 Identities=37% Similarity=0.599 Sum_probs=56.6
Q ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFER-THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
++.|+.|+..|+.+|+..|.. ++||+..++..||..|||++.+|++||||||+|+|+...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 567999999999999999995 999999999999999999999999999999999998663
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.81 E-value=5.4e-20 Score=119.88 Aligned_cols=59 Identities=37% Similarity=0.650 Sum_probs=56.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFER-THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+.|+.|+..|+.+|+..|.. ++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999865
No 37
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.81 E-value=1.5e-20 Score=127.13 Aligned_cols=62 Identities=40% Similarity=0.681 Sum_probs=54.7
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
..+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 34567889999999999999999999999999999999999999999999999999999974
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.81 E-value=5.2e-20 Score=114.33 Aligned_cols=54 Identities=41% Similarity=0.791 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
|.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999984
No 39
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-20 Score=121.68 Aligned_cols=64 Identities=63% Similarity=1.086 Sum_probs=59.5
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..++++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 4566888999999999999999999999999999999999999999999999999999987543
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=7e-20 Score=120.08 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 61 NRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.|+.||.+|+.+|+..|..++||+..++++||..+||++.||++||||||+|+|+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 46779999999999999999999999999999999999999999999999999874
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=118.32 Aligned_cols=59 Identities=47% Similarity=0.755 Sum_probs=56.3
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
++.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67899999999999999999999999999999999999999999999999999998743
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=6.2e-20 Score=126.24 Aligned_cols=63 Identities=37% Similarity=0.603 Sum_probs=56.1
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.+.++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.||++||||||+|+|+..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456788999999999999999999999999999999999999999999999999999998754
No 43
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=2.3e-20 Score=126.18 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.|+.+|+.+|+..|..++||+..++.+||..|||++.||+|||||||+|+|+.++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999987543
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=4.7e-20 Score=126.40 Aligned_cols=64 Identities=23% Similarity=0.482 Sum_probs=60.4
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------CCchhHhhhhhhhHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIG---------------LPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..+.+|.|+.|+..|+.+|+.+|..++||+..++++||..|+ |++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999999999 9999999999999999998766
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.79 E-value=8.8e-20 Score=125.26 Aligned_cols=63 Identities=27% Similarity=0.487 Sum_probs=56.0
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
....++.|+.|+..|+.+|+..|..++||+..++.+||..|||++.||++||||||+|+|+..
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 344567899999999999999999999999999999999999999999999999999999754
No 46
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=123.28 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=61.7
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh---------------------CCCchhHhhhhhhhHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKI---------------------GLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l---------------------~l~~~qV~~WFqNrR~k~k 114 (169)
+++||.|+.|++.|+.+|+..|..++||+..+|++||..| .|++.+|++||||||+++|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4578899999999999999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHH
Q psy4868 115 REEKLRNQ 122 (169)
Q Consensus 115 k~~~~~~~ 122 (169)
++.+....
T Consensus 84 r~~~~~~~ 91 (102)
T 2da6_A 84 FRQKLAMD 91 (102)
T ss_dssp HHHHHHHS
T ss_pred HhhHhhhc
Confidence 88775543
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=119.00 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=56.7
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.++.|+.|+..|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 467799999999999999999999999999999999999999999999999999998743
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.5e-19 Score=117.70 Aligned_cols=58 Identities=28% Similarity=0.420 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 60 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
++|+.|+..|+.+|+..|..++||+..++..||..|||++.+|++||||||+|+|+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3567799999999999999999999999999999999999999999999999999854
No 49
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.78 E-value=1.2e-19 Score=122.30 Aligned_cols=62 Identities=27% Similarity=0.550 Sum_probs=57.4
Q ss_pred cCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEF---ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLR 120 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 120 (169)
||.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 6789999999999999999 8999999999999999999999999999999999999875543
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=3.6e-19 Score=116.19 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=57.5
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+.++.|+.|+..|+.+|+.+|.. ++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 456788999999999999999987 99999999999999999999999999999999998743
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.78 E-value=4.6e-19 Score=115.72 Aligned_cols=60 Identities=28% Similarity=0.597 Sum_probs=56.6
Q ss_pred cCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEF---ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6789999999999999999 89999999999999999999999999999999999987543
No 52
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=118.53 Aligned_cols=59 Identities=25% Similarity=0.477 Sum_probs=55.2
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+.|+.|+.+|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|+|+..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34589999999999999999999999999999999999999999999999999998743
No 53
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=116.26 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=57.0
Q ss_pred hccCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||+|+|+++...
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 45788999999999999999987 599999999999999999999999999999999987543
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=5.6e-19 Score=111.04 Aligned_cols=54 Identities=31% Similarity=0.474 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 62 RTSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+++|+
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 688999999999999999 999999999999999999999999999999999986
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.5e-19 Score=115.10 Aligned_cols=58 Identities=24% Similarity=0.497 Sum_probs=55.2
Q ss_pred ccCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 58 LQRNRTSFTNDQIDNLEKEF---ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F---~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
.++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||+|+++||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 89999999999999999999999999999999999875
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=110.52 Aligned_cols=53 Identities=32% Similarity=0.545 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
-+.+|+.+|+..|..++||+..++.+||..+||++.||++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999743
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=9.1e-19 Score=111.21 Aligned_cols=58 Identities=28% Similarity=0.380 Sum_probs=54.8
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFER-THYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~-~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
++.+|.||.|+.+|+.+|+..|.. +.||+...++.||.++||++++|++||||+|.-.
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 456899999999999999999999 9999999999999999999999999999999753
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.76 E-value=1.3e-18 Score=117.26 Aligned_cols=59 Identities=29% Similarity=0.413 Sum_probs=55.5
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.++++.|+.|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 445667999999999999999999 99999999999999999999999999999999986
No 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.5e-19 Score=116.83 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=53.2
Q ss_pred cCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEF-ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
.+.|.+++..|+.+||..| ..++||+..++.+||..|||++.||+|||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4556778899999999999 99999999999999999999999999999999999985
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.75 E-value=1.3e-18 Score=116.28 Aligned_cols=58 Identities=28% Similarity=0.404 Sum_probs=53.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
++.|++|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 345677999999999999999 9999999999999999999999999999999999875
No 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-19 Score=119.59 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..|+..|+.+|+..|..++||+..++.+||..|||++.+|+|||||||+|+|+.++
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 34899999999999999999999999999999999999999999999999887443
No 62
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.75 E-value=7.8e-19 Score=131.48 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=51.9
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..+++|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+||..+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 5677889999999999999999999999999999999999999999999999999999998543
No 63
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.75 E-value=1e-18 Score=130.30 Aligned_cols=62 Identities=31% Similarity=0.446 Sum_probs=54.6
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
..++||.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999873
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.75 E-value=4.3e-19 Score=122.34 Aligned_cols=65 Identities=31% Similarity=0.467 Sum_probs=53.7
Q ss_pred hhhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------------hC---CCchhHhhhhhhhHHH
Q psy4868 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAK------------------IG---LPEARIQVWFSNRRAK 112 (169)
Q Consensus 54 ~~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~------------------l~---l~~~qV~~WFqNrR~k 112 (169)
..++.+|.|+.|+..|+.+|+..|..++||+..++++||.. || |++.+|++||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 35677889999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHHHH
Q psy4868 113 WRREEK 118 (169)
Q Consensus 113 ~kk~~~ 118 (169)
++++.+
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 876554
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.74 E-value=1.5e-18 Score=127.66 Aligned_cols=62 Identities=27% Similarity=0.509 Sum_probs=55.4
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
..+++|.|+.|+..|+.+|+..|..++||+..++..||..|||++.+|+|||||||+|+||.
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667889999999999999999999999999999999999999999999999999999874
No 66
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.74 E-value=2.2e-18 Score=127.35 Aligned_cols=61 Identities=31% Similarity=0.535 Sum_probs=57.9
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..+++|.|+.|+..|+.+|+.+|..++||+..++..||..|||++.||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567888999999999999999999999999999999999999999999999999999885
No 67
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=2.5e-18 Score=111.01 Aligned_cols=55 Identities=31% Similarity=0.633 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
..++..|+..|+..|..++||+..++.+||..|||++.||++||||||+|+|+.+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4688999999999999999999999999999999999999999999999998743
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.8e-18 Score=109.83 Aligned_cols=49 Identities=31% Similarity=0.378 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 67 NDQIDNLEKEF-ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 67 ~~q~~~Le~~F-~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..|+.+||..| ..+.||+..++.+||..|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 56899999999999999999999999999999999874
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-18 Score=109.00 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..++..|+.+|+..|..++||+..++.+||..|||++.+|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44678999999999999999999999999999999999999999999998764
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.72 E-value=4e-18 Score=126.52 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=57.3
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+++|.|+.|+..|+..|+..|..++||+..++..||..|||++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4567789999999999999999999999999999999999999999999999999999873
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.69 E-value=1.3e-17 Score=124.64 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=54.5
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
..+.||.|+.|+..|+.+|+..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 456688999999999999999999999999999999999999999999999999999988643
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=9.8e-17 Score=103.02 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFE---RTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~---~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..|+.+|+.+|+.+|. .++||+..++.+||..+||++.||++||||+|+|+|+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3689999999999999 9999999999999999999999999999999999987533
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.62 E-value=1.4e-16 Score=121.96 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=53.7
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCchhHhhhhhhhHHHH
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIG---------------------LPEARIQVWFSNRRAKW 113 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WFqNrR~k~ 113 (169)
.++.||.|+.|+..|+.+|+..|..++||+..+|++||..|+ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 567789999999999999999999999999999999999999 99999999999999987
Q ss_pred HH
Q psy4868 114 RR 115 (169)
Q Consensus 114 kk 115 (169)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 63
No 74
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=97.35 Aligned_cols=57 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFER---THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~---~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 119 (169)
..|+.+++.+|+.+|.. ++||+..++.+||..+||++.||++||+|+|.|.++....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 45889999999999987 9999999999999999999999999999999999876543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=95.19 Aligned_cols=46 Identities=20% Similarity=0.466 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 67 NDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 67 ~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
.+|+..|+.+|..+++|+..++..||..+||..++|++||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5689999999999999999999999999999999999999999974
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=115.73 Aligned_cols=61 Identities=28% Similarity=0.484 Sum_probs=53.6
Q ss_pred hhhhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC---------------------CCchhHhhhhhhhHH
Q psy4868 53 RLKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIG---------------------LPEARIQVWFSNRRA 111 (169)
Q Consensus 53 ~~~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~---------------------l~~~qV~~WFqNrR~ 111 (169)
..+++.||.|+.|++.|+.+|+..|..++||+..+|++||..|| |++.+|++||||||+
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhh
Confidence 34677899999999999999999999999999999999999988 899999999999998
Q ss_pred HH
Q psy4868 112 KW 113 (169)
Q Consensus 112 k~ 113 (169)
..
T Consensus 217 ~~ 218 (221)
T 2h8r_A 217 EE 218 (221)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.39 E-value=1.1e-13 Score=115.29 Aligned_cols=58 Identities=22% Similarity=0.409 Sum_probs=53.4
Q ss_pred hccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 57 k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
-.++.++.|+..|+..|+..|..++||+..+|.+||..+||+++||++||||||+|+|
T Consensus 364 ~~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 364 AQTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3445577899999999999999999999999999999999999999999999999865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.87 E-value=1.7e-10 Score=64.83 Aligned_cols=21 Identities=38% Similarity=0.922 Sum_probs=18.5
Q ss_pred hhHhhhhhhhHHHHHHHHHHH
Q psy4868 100 ARIQVWFSNRRAKWRREEKLR 120 (169)
Q Consensus 100 ~qV~~WFqNrR~k~kk~~~~~ 120 (169)
+||+|||||||+|+|+.+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987754
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.80 E-value=0.0014 Score=41.44 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
..+|+++|.....+.......|..+..|+..||+.||-
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999999999999999999999999994
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.89 E-value=0.84 Score=26.95 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
|..|+.+....+...+.. .........++|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~-g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN-DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc-CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888887666444443 3321112568999999999999999753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.20 E-value=1.6 Score=27.87 Aligned_cols=45 Identities=20% Similarity=0.314 Sum_probs=32.4
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 58 LQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 58 ~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
.++.+..|+.++...+...+. ... -..+||..+|++...|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 345567889988655555554 332 256889999999999999973
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=86.84 E-value=1.8 Score=29.35 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=37.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 61 NRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
.|..|+.++...+-..+..+.... ..+||..+|++...|..|..++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 577899999887777775555443 336899999999999999877554
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=85.40 E-value=2.2 Score=27.30 Aligned_cols=49 Identities=10% Similarity=0.289 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.++..+..+|...|... ....+||..||++...|+.+...-|.+.|+.-
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 47788888887765432 23678999999999999999887777766543
No 84
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=83.32 E-value=5.4 Score=26.24 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=37.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 60 r~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.....+++.+..+|...+.- + ...+||..||++...|+.+..+-+.|..
T Consensus 30 ~~~~~Lt~re~~Vl~l~~~G--~----s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 30 YGDKRLSPKESEVLRLFAEG--F----LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp CSSSSCCHHHHHHHHHHHHT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 33567999999999776532 2 2478999999999999999876555543
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=78.76 E-value=4.4 Score=21.76 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
.++..+...+...+... + ...+||..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46676665555555432 2 2568899999999999999853
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=78.26 E-value=3.1 Score=24.70 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
.+++.+..+|...|... ....++|..+|++...|+.|...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47788888888776432 235789999999999999998766666554
No 87
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=76.41 E-value=5.4 Score=25.55 Aligned_cols=42 Identities=10% Similarity=0.351 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERT-HYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~-~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
|..|+.++....-..+... .+ ...++|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568888776555555332 22 367899999999999999974
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=74.93 E-value=4.1 Score=26.34 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
..++..+..+|..++.- + ...+||..||++...|+.+..+-+.|.+
T Consensus 26 ~~Lt~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35889999998876332 2 2478999999999999998876555543
No 89
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=74.66 E-value=6.7 Score=26.40 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+++.+..+|...|... ....++|..+|++...|+.|...-|.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 37888888888776543 2357899999999999999998877777654
No 90
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=74.32 E-value=2 Score=23.67 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR 110 (169)
++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 4555555554455432 2 356889999999999999996543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=72.39 E-value=5.3 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..++..+..+|..++. . ....+||..+|++...|+.+..+-+.|.+.
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3588999998887432 2 246789999999999999998776666553
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.07 E-value=7.3 Score=23.53 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.+++.+..+|...|..... ......+||..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888742100 0123568999999999999999876665554
No 93
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=71.45 E-value=8.8 Score=26.19 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+++.+..+|. .|.. . ....+||..||++...|+.+...-|.+.|+.-
T Consensus 109 ~L~~~~r~v~~-~~~~-g----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-G----YSYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT-T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-C----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 36777777777 4332 2 24678999999999999999876666665543
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=70.06 E-value=8.1 Score=22.97 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
-..+++.+..+|..++ ..+ ...++|..+|++...|+.++..-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3458899999998743 222 3568999999999999999876565544
No 95
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=69.36 E-value=11 Score=25.19 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 117 (169)
.+++.+..+|...|... ....++|..+|++...|+.+...-|.+.++..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 37788888887765433 23578999999999999999988777776653
No 96
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=68.28 E-value=13 Score=24.13 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHHhcC--CCC-HHHHHHHHHHhCCCchhHhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERTH--YPD-VFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~--~p~-~~~~~~La~~l~l~~~qV~~WFq 107 (169)
+..|+.++....-..+.... +.+ ......+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 34688888765544443221 222 13567899999999999999963
No 97
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=67.32 E-value=6.6 Score=23.37 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.+++.+..+|...|....+ ......++|..+|++...|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3678888888888732111 1123578999999999999998766555544
No 98
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=66.55 E-value=6.4 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
+++.+..+|..+|. .+ ...++|..+|++...|+.++..-+.|.+.
T Consensus 17 L~~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL----PNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 56777788876432 22 35689999999999999998776666554
No 99
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=64.69 E-value=8 Score=26.98 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=36.2
Q ss_pred cCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHH-HHh--CCCchhHhhhhhh
Q psy4868 59 QRNRTSFTNDQIDNLEKEF-ERTHYPDVFARERLA-AKI--GLPEARIQVWFSN 108 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F-~~~~~p~~~~~~~La-~~l--~l~~~qV~~WFqN 108 (169)
++.|..+|.+|...|..++ ..++-....+....| ..+ +++...|..|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 4678999999999999998 566666544333322 267 7788889999865
No 100
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=63.92 E-value=9.2 Score=27.98 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
.+++.+..+|...|... ....+||..||++...|+.+...-|.+.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 47788888888776432 2467899999999999999988777776654
No 101
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=63.49 E-value=16 Score=23.32 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 61 NRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
....++..+..+|...+. .+ ...+||..||++...|+....+=+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 355699999999987762 22 367899999999999998876655443
No 102
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=63.47 E-value=7.6 Score=24.47 Aligned_cols=50 Identities=12% Similarity=0.057 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.+++.+..+|...|....- ......+||..+|++...|+.|...-+.+.|
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3678888888887742100 0123678899999999999999876665554
No 103
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=63.13 E-value=12 Score=26.45 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
+++.+..+|...|-.. ....+||..+|++...|+.+...-|.+.|+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 6677777777655432 2357899999999999999988777666653
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=62.50 E-value=5.9 Score=25.17 Aligned_cols=47 Identities=15% Similarity=0.162 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..+++.+..+|..++. .+ ...+||..+|++...|+.+..+-+.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3578888888877533 22 24678999999999999998776666543
No 105
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.15 E-value=15 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 64 SFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
.++.++...+...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678888999999863 5578888888888888998888777664
No 106
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=57.01 E-value=15 Score=23.69 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhHhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIG--LPEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~--l~~~qV~~WFq 107 (169)
...++.+++..|...|.. +.+.+..+...+...+| ++..+|+.+|+
T Consensus 27 ~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 27 PVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 345788899999999963 56899999998888887 46677888774
No 107
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=56.47 E-value=14 Score=20.70 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 67 NDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 67 ~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
..+...+...+.. .+ ...+||..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~-g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKM-GY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHT-TC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 5555555554432 22 356889999999999999975
No 108
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=56.05 E-value=12 Score=23.23 Aligned_cols=45 Identities=11% Similarity=0.136 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
..++.+++..|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 34678888899998853 5578889998888899998888888874
No 109
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=55.20 E-value=9.9 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
..+||..||++..-|-.|+.++..-..+...
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~~~~ 43 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLRQSD 43 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHHHHH
Confidence 6789999999999999998765555444333
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=54.95 E-value=8.8 Score=22.01 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=22.7
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
..++|..+|++...|+.+..+-+.|.+.
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 3689999999999999998776666543
No 111
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=53.70 E-value=40 Score=21.97 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 118 (169)
.+++.+..++...|-.+.+ ......++|..+|++...|+.....-+.+.|+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888777753211 11246789999999999999988777766665543
No 112
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=52.74 E-value=10 Score=26.65 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....| . .....||...|++...|-.+|.|+-.=.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 4455666888888 5 6789999999999999999999876543
No 113
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=51.12 E-value=7.9 Score=23.60 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCC
Confidence 578999999999999999987763
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=50.79 E-value=7.8 Score=22.22 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 115
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=50.70 E-value=42 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCch
Q psy4868 61 NRTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEA 100 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~ 100 (169)
+|..+|.+|+..|...|.. +.+.+..+...+...||+...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999964 568999999888888886543
No 116
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=50.24 E-value=40 Score=20.42 Aligned_cols=57 Identities=9% Similarity=0.018 Sum_probs=37.1
Q ss_pred cCCCCCCCHHHHHHHHHH-HHhc-CCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 59 QRNRTSFTNDQIDNLEKE-FERT-HYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~-F~~~-~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
++.|-++|++.-...-.. .... ..-.+..+.++...-||+..+|+.=.|.-|.+.+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 556778888754443333 3333 12334555666666689999999999988877654
No 117
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=49.67 E-value=8.5 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 118
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=49.08 E-value=19 Score=21.54 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=31.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..++.+.+..+....... ..+||..+|++...|..|-.+++.
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 357788887776654332 578999999999999999887653
No 119
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=47.79 E-value=31 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
...+++.+..+|.-.+. .+ .-.+||..||+++..|+....+-+.|..
T Consensus 173 ~~~Lt~~e~~vl~~~~~--g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK--GK----TASVTANLTGINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGSCCHHHHHHHHHHHT--TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 34699999999977543 22 3578999999999999999887666644
No 120
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=47.61 E-value=21 Score=23.78 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
..++.++...+...+... + ...++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457787777666666532 2 2567899999999999999964
No 121
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=47.43 E-value=18 Score=22.88 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 65 FTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
++.++...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888888853 4578888888888888999888877764
No 122
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=47.06 E-value=9.9 Score=22.54 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987653
No 123
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=46.96 E-value=9.4 Score=22.26 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 124
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=46.56 E-value=14 Score=26.92 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=35.1
Q ss_pred CCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 60 RNRTSFTNDQ-IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 60 r~Rt~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+.|...+.+. +......|....|-. .....||..+|++...|..+|.|+-.=..
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~ 74 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLT 74 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 3344455544 344555677766643 23678899999999999999998765543
No 125
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.00 E-value=11 Score=22.28 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998763
No 126
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=44.18 E-value=7.7 Score=27.33 Aligned_cols=46 Identities=24% Similarity=0.305 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
+++.+..+|...|.... ...+||..+|++...|+.+...-|.+.|+
T Consensus 136 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 136 LPEAQRALIERAFFGDL-----THRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp SCHHHHHHHHHHHHSCC-----SSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 67777777776554332 23578999999999999999877766654
No 127
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=44.13 E-value=11 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.415 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987654
No 128
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=43.47 E-value=12 Score=22.22 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 129
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.01 E-value=12 Score=21.60 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999977654
No 130
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=42.43 E-value=0.2 Score=36.37 Aligned_cols=30 Identities=3% Similarity=-0.077 Sum_probs=21.2
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCCCH
Q psy4868 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDV 85 (169)
Q Consensus 56 ~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~ 85 (169)
.+.+|.|+.|+..|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999998864
No 131
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=42.42 E-value=24 Score=23.68 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..++.+.+..|...... ...+||..+|++...|..|-.+++.
T Consensus 69 ~~~~~~~l~~~R~~~gl-------sq~~la~~~g~s~~~i~~~E~g~~~ 110 (133)
T 3o9x_A 69 ETVAPEFIVKVRKKLSL-------TQKEASEIFGGGVNAFSRYEKGNAQ 110 (133)
T ss_dssp TTCCHHHHHHHHHHTTC-------CHHHHHHHHCSCTTHHHHHHHTSSC
T ss_pred cCCCHHHHHHHHHHcCC-------CHHHHHHHHCCCHHHHHHHHCCCCC
Confidence 34667777777654432 2568899999999999999987653
No 132
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=42.33 E-value=23 Score=26.84 Aligned_cols=48 Identities=10% Similarity=0.032 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~ 116 (169)
..+++.+..+|.-.+. .+ .-.++|..||++...|++...+-|.|.+..
T Consensus 196 ~~L~~~erevl~L~~~--G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~ 243 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL----SSKEIAATLYISVNTVNRHRQNILEKLSVG 243 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 4589999998887642 22 367899999999999999988877776654
No 133
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=41.95 E-value=13 Score=22.55 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 468999999999999999987764
No 134
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=41.67 E-value=45 Score=24.65 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
...+++.+..+|.-.+. . ..-.+||..||+++..|+....+-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45699999999976532 2 23578999999999999998877666543
No 135
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=41.10 E-value=14 Score=21.59 Aligned_cols=19 Identities=21% Similarity=0.606 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCchhHhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWF 106 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WF 106 (169)
..+||..||++...|..|+
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 136
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=40.54 E-value=25 Score=21.84 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHHHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKLR 120 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 120 (169)
+.+++-.|+.|+||...--.. | =.|||.+||..+..-
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHHH
Confidence 456666788899987431111 1 148888888776644
No 137
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=40.01 E-value=15 Score=21.55 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998764
No 138
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.90 E-value=21 Score=25.06 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....| . .....||...|++...|-.+|.|+-.=.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L~ 60 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQALV 60 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 4445566888888 5 5788999999999999999999876543
No 139
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=39.78 E-value=15 Score=21.84 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 140
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=39.62 E-value=17 Score=22.36 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998876
No 141
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=39.53 E-value=14 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~ 48 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCC
Confidence 567999999999999999987654
No 142
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=38.99 E-value=75 Score=20.29 Aligned_cols=39 Identities=3% Similarity=0.003 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
.++.++...+...+.. .+ ...++|..+|++...|..|+.
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~ 55 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILN 55 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 4777776666666643 32 246789999999999999985
No 143
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=38.67 E-value=17 Score=26.41 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|...|.|+-.=..
T Consensus 50 l~aA~~lf~e~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 93 (236)
T 3q0w_A 50 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLL 93 (236)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCcHHHHHHHCCCHHHHHH
Confidence 334444577766643 33678899999999999999998765443
No 144
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=38.66 E-value=55 Score=19.42 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--Cchh---Hhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEAR---IQVWF 106 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~q---V~~WF 106 (169)
..++..++..|...|.. +.+.+..+...+...+|. +..+ |..+|
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (86)
T 1j7q_A 6 RALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59 (86)
T ss_dssp CCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44677888888888853 558888888888888875 4455 66665
No 145
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=38.57 E-value=18 Score=25.14 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.+++.+..+|.-.| .......+||..||++...|+.+...-|.+.|
T Consensus 93 ~Lp~~~r~vl~L~~-----~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 93 RMTPLSRQALLLTA-----MEGFSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp TSCTTHHHHHTTTS-----SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 46666666665433 22334688999999999999999876555544
No 146
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=38.36 E-value=20 Score=21.86 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~~ 51 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPDN 51 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 567999999999999999987553
No 147
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=37.96 E-value=66 Score=21.23 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHhC--CCchhHhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER------THYPDVFARERLAAKIG--LPEARIQVWFS 107 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~------~~~p~~~~~~~La~~l~--l~~~qV~~WFq 107 (169)
..++..++..|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 10 EQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45788899999998853 55788888888777777 45556666653
No 148
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=37.87 E-value=15 Score=26.20 Aligned_cols=44 Identities=9% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-.+|.++-.=..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHH
Confidence 444555677777654 34678899999999999999998665443
No 149
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=36.96 E-value=37 Score=23.46 Aligned_cols=41 Identities=0% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
..++.++...+...+... + ...++|..+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 357777766666666432 2 2557899999999999999864
No 150
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=36.40 E-value=49 Score=19.60 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC-CCchhHhhhhh
Q psy4868 64 SFTNDQIDNLEKEFER-----THYPDVFARERLAAKIG-LPEARIQVWFS 107 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~-l~~~qV~~WFq 107 (169)
.+++.+...|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4678888888888853 45677777777777776 55666666663
No 151
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=36.08 E-value=78 Score=20.80 Aligned_cols=44 Identities=5% Similarity=0.057 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhC--CCchhHhhhhhhhHH
Q psy4868 64 SFTNDQIDNLEKEFERTHYPDVFARERLAAKIG--LPEARIQVWFSNRRA 111 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~--l~~~qV~~WFqNrR~ 111 (169)
.++.++...+... ..++..+. .+|+..|| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 4778877777666 44554444 45677778 788999999975544
No 152
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=36.03 E-value=29 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-.+|.|+-.=.
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 3344455777777543 367889999999999999999865543
No 153
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=35.64 E-value=55 Score=19.28 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhHhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIG--LPEARIQVWFS 107 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~--l~~~qV~~WFq 107 (169)
..++..++..|...|.. +.+.+..+...+...+| ++...|..+|.
T Consensus 6 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 6 KVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45788999999999964 45788888888877777 45566766663
No 154
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=35.17 E-value=19 Score=21.63 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 155
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=34.95 E-value=19 Score=22.48 Aligned_cols=23 Identities=4% Similarity=0.145 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 156
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=34.37 E-value=31 Score=25.62 Aligned_cols=52 Identities=21% Similarity=0.353 Sum_probs=34.7
Q ss_pred CCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 62 RTSFTNDQ-IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 62 Rt~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
|...+.++ +..-...|....|-. .....||..+|++...|-.+|.|+-.=..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 78 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTELLR 78 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHHH
Confidence 44455554 334455566666644 33677899999999999999999765443
No 157
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=34.27 E-value=84 Score=20.34 Aligned_cols=44 Identities=7% Similarity=0.045 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhHhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER----THYPDVFARERLAAKIGLPEARIQVWF 106 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WF 106 (169)
..++.++...+...|.. +.+.+..+...+...+|++...|...|
T Consensus 7 w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~ 54 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVW 54 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHH
Confidence 45678888889888853 457888888888888888888776665
No 158
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=34.14 E-value=27 Score=20.73 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchhHhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqN 108 (169)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999754
No 159
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=34.02 E-value=70 Score=24.31 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
..+++.+..+|.-...- ....+||..||+++..|+....|-+.|..
T Consensus 196 ~~Lt~re~~vl~~~~~G------~s~~eIA~~l~is~~TV~~~~~~~~~kl~ 241 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRG------KTNWEIATILNISERTVKFHVANVIRKLN 241 (265)
T ss_dssp CCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 57999999999877432 23678999999999999999888777654
No 160
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=34.00 E-value=22 Score=24.78 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....| . .....||...|++...|-..|.|+-.=.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 63 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLL 63 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHH
Confidence 4455566888888 5 5788999999999999999999876543
No 161
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=33.94 E-value=71 Score=19.13 Aligned_cols=44 Identities=7% Similarity=0.128 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhhh
Q psy4868 64 SFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWFS 107 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WFq 107 (169)
.++..++..|...|.. +.+.+..+...+...+|+ +...|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3788889999999863 457888888888888774 4566777663
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=33.94 E-value=19 Score=21.50 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998765
No 163
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=33.81 E-value=21 Score=21.59 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 164
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=33.38 E-value=21 Score=22.07 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCchhHhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWF 106 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WF 106 (169)
..++|..+|++...|+.|-
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4678999999999999995
No 165
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.37 E-value=76 Score=21.74 Aligned_cols=46 Identities=9% Similarity=-0.025 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHH------hCCCchhHhhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARER-LAAK------IGLPEARIQVWFSN 108 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~-La~~------l~l~~~qV~~WFqN 108 (169)
..++.++...|...+..++..+..+... |... ..++...|..|+..
T Consensus 82 ~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 82 KVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 4567777777777777666666555443 3222 24678888888753
No 166
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.11 E-value=25 Score=24.93 Aligned_cols=43 Identities=7% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|.... .......||...|++...|..+|.|+-.=..
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~ 68 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLFV 68 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 344455577666 5566888999999999999999998765443
No 167
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=31.74 E-value=32 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=15.6
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45667777777777777776654
No 168
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=31.58 E-value=23 Score=21.83 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 47899999999999999998754
No 169
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=31.36 E-value=10 Score=27.71 Aligned_cols=43 Identities=5% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 65 FTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+++.+..+|...|. ......+||..||++...|+.++..-+.+
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 55666666655443 23456789999999999999988655444
No 170
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=31.13 E-value=61 Score=18.57 Aligned_cols=42 Identities=14% Similarity=0.244 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhh
Q psy4868 65 FTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWF 106 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF 106 (169)
++..++..|...|.. +.+.+..+...+...+|. +...|..+|
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 49 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELM 49 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356778888888853 446777887777777775 344565555
No 171
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=30.89 E-value=43 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCchhHhhhhhhh
Q psy4868 86 FARERLAAKIGLPEARIQVWFSNR 109 (169)
Q Consensus 86 ~~~~~La~~l~l~~~qV~~WFqNr 109 (169)
....+||..+|+++..+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 346789999999998888888543
No 172
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.63 E-value=12 Score=25.96 Aligned_cols=23 Identities=26% Similarity=0.684 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
...+|..+|+...+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 46789999999999999986555
No 173
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=29.85 E-value=51 Score=23.80 Aligned_cols=46 Identities=20% Similarity=0.207 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
..+|..+..+|.-.... + ...+||..++++...|++...+=|.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g--~----s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG--L----TNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC--C----CHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 46899998888766442 1 3578999999999999999887776643
No 174
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=29.72 E-value=89 Score=23.14 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 61 NRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
....+++.+..+|.-...- ..-.+||..||+++..|+.-..+=+.|.
T Consensus 172 ~~~~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 172 SNVRLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GGCCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 3457899999998765321 2367899999999999999877665554
No 175
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.68 E-value=25 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998765
No 176
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=29.62 E-value=27 Score=21.85 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~~ 43 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRST 43 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 177
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=29.54 E-value=27 Score=24.49 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-. .....||...|++...|-.+|.++-.=
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L 78 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDV 78 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 345555577777653 336788999999999999999987653
No 178
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.45 E-value=26 Score=21.06 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56889999999999999997753
No 179
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.44 E-value=26 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCchhHhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqN 108 (169)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999987
No 180
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=29.02 E-value=16 Score=26.34 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-. .....||...|++...|-.+|.++-.=..
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~L~~ 79 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEALYA 79 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHHHHH
Confidence 444455566665532 23678999999999999999998765544
No 181
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=28.74 E-value=18 Score=26.28 Aligned_cols=42 Identities=17% Similarity=0.385 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-.. ....||...|++...|-.+|.++-.=
T Consensus 49 l~aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 49 LDACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHH
Confidence 3344455777776543 36788999999999999999987553
No 182
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=28.73 E-value=39 Score=23.17 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 69 QIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 69 q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
=+..-...|....|- .....||...|++...|...|.|+-.=..-
T Consensus 14 Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~ 58 (190)
T 3jsj_A 14 LLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAA 58 (190)
T ss_dssp HHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 345555668888877 568889999999999999999988765443
No 183
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=28.54 E-value=46 Score=23.10 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-... ...||...|++...|-..|.++-.=..
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 65 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAGLLK 65 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHHHHH
Confidence 44555667777775433 677899999999999999999765443
No 184
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=27.77 E-value=38 Score=23.76 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCc
Q psy4868 62 RTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPE 99 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~ 99 (169)
++.||.+|+..|...|.. +.+.+..+...+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 456889999999999963 55788888888888887644
No 185
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=27.69 E-value=23 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-.+|.++-.=..
T Consensus 49 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sK~~L~~ 92 (255)
T 3g1o_A 49 LATAENLLEDRPLAD-ISVDDLAKGAGISRPTFYFYFPSKEAVLL 92 (255)
T ss_dssp HHHHHHHHTTSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCCcc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 334444566666543 33678899999999999999998765443
No 186
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=27.45 E-value=1.2e+02 Score=19.89 Aligned_cols=46 Identities=11% Similarity=0.286 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWFSN 108 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WFqN 108 (169)
..++..++..|...|.. +.+.+..+...+...+|+ +...|..+|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 45889999999999953 457888888888777764 45667766643
No 187
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=27.19 E-value=33 Score=19.75 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCchhHhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqN 108 (169)
..++|..+|++...|..|..+
T Consensus 16 ~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999843
No 188
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.10 E-value=66 Score=22.51 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 69 QIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 69 q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
=+..-...|....|-.. ....||...|++..-|-..|.|+-.=..
T Consensus 16 Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 16 ALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 34455566888887643 3678899999999999999988765443
No 189
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=27.02 E-value=26 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-.+|.|+-.=..
T Consensus 29 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~ 72 (231)
T 2zcx_A 29 LDAARELGTERGIREI-TLTDIAATVGMHKSALLRYFETREQIFL 72 (231)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHHHH
Confidence 3444556877777543 3678899999999999999999765444
No 190
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=27.00 E-value=34 Score=24.22 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|- .....||...|++..-|-.+|.|+-.=..
T Consensus 18 l~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~ 60 (224)
T 1t33_A 18 IAAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLYL 60 (224)
T ss_dssp HHHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHH
Confidence 44455567777776 56788999999999999999999765544
No 191
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=26.64 E-value=1.1e+02 Score=20.38 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC---CchhHhhhhh
Q psy4868 64 SFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL---PEARIQVWFS 107 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l---~~~qV~~WFq 107 (169)
.++..++..|...|.. +.+.+..+...+...+|+ +..+|..+|.
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~ 69 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIK 69 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 5788999999999963 457888888888887766 5556666664
No 192
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=26.48 E-value=68 Score=23.58 Aligned_cols=53 Identities=6% Similarity=0.102 Sum_probs=34.9
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 61 NRTSFTNDQ-IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 61 ~Rt~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.+...+.++ +......|....|-.. ....||..+|++..-|-..|.|+-.=..
T Consensus 12 ~~~~~~r~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~Ll~ 65 (237)
T 2hxo_A 12 RQEPLSRERIVGAAVELLDTVGERGL-TFRALAERLATGPGAIYWHITGKAELLG 65 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHTTTTTC-CHHHHHHHHTSCGGGGGGTCCCHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHHCCChHHHHHhcCCHHHHHH
Confidence 344455544 3445556777776543 3678899999999999999999765543
No 193
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=26.46 E-value=62 Score=22.22 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHHhCCC--chhHhhh
Q psy4868 64 SFTNDQIDNLEKEFER-------THYPDVFARERLAAKIGLP--EARIQVW 105 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~-------~~~p~~~~~~~La~~l~l~--~~qV~~W 105 (169)
.+|.+|+..|+.+|.. +.+.+..+...+.+.||+. ..+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4789999999999852 2478888888888888864 4444433
No 194
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=26.41 E-value=84 Score=22.80 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhH
Q psy4868 68 DQIDNLEKEFERTHYPDVFARERLAAKIGLPEARI 102 (169)
Q Consensus 68 ~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV 102 (169)
.-+.+|...=....|.+......+|..|+|+..+|
T Consensus 26 ~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 26 AIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp GHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 44556665555568999999999999999998776
No 195
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.31 E-value=62 Score=24.00 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 61 NRTSFTNDQ-IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 61 ~Rt~~t~~q-~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
.|...+.++ +..-...|....|-.. ....||..+|++..-|-..|.|+-.=.
T Consensus 15 ~r~~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~Ll 67 (243)
T 2g7l_A 15 AKPALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAELH 67 (243)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHHHH
Confidence 344456554 3345556777776443 367889999999999999999865443
No 196
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.29 E-value=1.2e+02 Score=18.56 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVW 105 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~W 105 (169)
...+|.++...|+.....-+--+...=..||..+|=+..+|+.-
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~ 51 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTK 51 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHH
Confidence 34699999999999876443211222245788888888887753
No 197
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.11 E-value=1.5e+02 Score=19.81 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHh----C--CCchhHhhhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARER-LAAKI----G--LPEARIQVWFSNR 109 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~-La~~l----~--l~~~qV~~WFqNr 109 (169)
...++.++...|...+..++..+..+... |.... | ++...|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 34678888888888887776666554433 22211 5 6888899998643
No 198
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=26.02 E-value=34 Score=21.67 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|-.+++.
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~~ 69 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRSE 69 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467999999999999999877643
No 199
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=25.74 E-value=52 Score=22.61 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-... ...||...|++...|-.+|.++-.=.
T Consensus 9 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~t~Y~~F~sK~~L~ 51 (190)
T 3vpr_A 9 LEEAAKLFTEKGYEATS-VQDLAQALGLSKAALYHHFGSKEEIL 51 (190)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 44455668777775433 67889999999999999999987654
No 200
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=25.59 E-value=54 Score=22.54 Aligned_cols=44 Identities=18% Similarity=0.390 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-.+|.++-.=..
T Consensus 13 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~~ 56 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNKEEIYR 56 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCHHHHHH
Confidence 4455666887777543 3678899999999999999999765543
No 201
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.57 E-value=52 Score=23.07 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-... ...||...|++...|-.+|.|+-.=..
T Consensus 17 l~aA~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2xdn_A 17 IEAAERAFYKRGVARTT-LADIAELAGVTRGAIYWHFNNKAELVQ 60 (210)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCTTHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccCc-HHHHHHHHCCChHHHHHHhCCHHHHHH
Confidence 44445568887775433 678899999999999999998765443
No 202
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=25.54 E-value=55 Score=22.33 Aligned_cols=43 Identities=7% Similarity=0.165 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 8 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 50 (194)
T 3bqz_B 8 LGVAKELFIKNGYNAT-TTGEIVKLSESSKGNLYYHFKTKENLF 50 (194)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHTTCCHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCCchhHHHhCCCHHHHH
Confidence 4455566777776543 367889999999999999999876543
No 203
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=25.53 E-value=36 Score=19.62 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=19.5
Q ss_pred HHHHHHHhC--CCchhHhhhhhhhH
Q psy4868 88 RERLAAKIG--LPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~--l~~~qV~~WFqNrR 110 (169)
..+||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467999999 99999999987654
No 204
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=25.40 E-value=55 Score=22.21 Aligned_cols=43 Identities=9% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 15 l~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~ 57 (195)
T 3ppb_A 15 LETALQLFVSQGFHGT-STATIAREAGVATGTLFHHFPSKEQLL 57 (195)
T ss_dssp HHHHHHHHHHTCSTTS-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 4455566777776543 377889999999999999999976644
No 205
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.38 E-value=31 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-.+|.|+-.=..
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGLYA 57 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 445555677776643 33677899999999999999998765443
No 206
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=25.35 E-value=37 Score=24.96 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCchhHhhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSNR 109 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNr 109 (169)
..+||..+|++...|..|..++
T Consensus 33 ~~~lA~~~gis~~~i~~~~~g~ 54 (236)
T 3bdn_A 33 QESVADKMGMGQSGVGALFNGI 54 (236)
T ss_dssp SHHHHHHHTSCHHHHHHHTTTT
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 3456666666666666666553
No 207
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=25.29 E-value=35 Score=23.41 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=
T Consensus 16 l~aa~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L 57 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGV-GLNEILQSAGVPKGSFYHYFKSKEQF 57 (197)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHTTTCSCHHHH
T ss_pred HHHHHHHHHHCCcccC-CHHHHHHHhCCChhhHHHHcCCHHHH
Confidence 4455566877777543 36778999999999999999998763
No 208
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.26 E-value=96 Score=21.24 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 65 FTNDQIDNLEKEFER----THYPDVFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
++..++.+|-..+.. +.+|+. ..||..+|++..+|....++
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~ 74 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRM 74 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHH
Confidence 567777777766653 456664 57999999999999888764
No 209
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.22 E-value=35 Score=20.70 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999998875
No 210
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=25.15 E-value=54 Score=22.81 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-.+|.|+-.=..
T Consensus 20 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~yF~sKe~L~~ 63 (203)
T 3ccy_A 20 IERAAAMFARQGYSET-SIGDIARACECSKSRLYHYFDSKEAVLR 63 (203)
T ss_dssp HHHHHHHHHHTCTTTS-CHHHHHHHTTCCGGGGTTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcCeeeeeeCCHHHHHH
Confidence 4455566888877654 3678899999999999999998765433
No 211
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=25.11 E-value=1.1e+02 Score=18.04 Aligned_cols=49 Identities=8% Similarity=0.159 Sum_probs=31.1
Q ss_pred hhhccCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC---CchhHhhhh
Q psy4868 55 KRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGL---PEARIQVWF 106 (169)
Q Consensus 55 ~~k~rr~Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l---~~~qV~~WF 106 (169)
.++.++.|..||.+.-..|.........-. =..||..+++ +..|++.-|
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~---W~~Ia~~~~~~~Rt~~qcr~Rw 54 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGN---WSKILLHYKFNNRTSVMLKDRW 54 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSC---HHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCc---HHHHHHHcCcCCCCHHHHHHHH
Confidence 345667788999999998888776644222 2345666653 555555433
No 212
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=25.07 E-value=34 Score=22.10 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 213
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.94 E-value=39 Score=20.13 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|-.++.++.
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998775
No 214
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.90 E-value=48 Score=22.69 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 13 l~aa~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 55 (199)
T 3qbm_A 13 VAQAAALFNVSGYAGT-AISDIMAATGLEKGGIYRHFESKEQLA 55 (199)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHhCcCcC-CHHHHHHHhCCCccHHHHhCCCHHHHH
Confidence 4455566777776543 367789999999999999999876543
No 215
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=24.61 E-value=1.4e+02 Score=19.12 Aligned_cols=41 Identities=10% Similarity=0.212 Sum_probs=27.5
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 62 RTSFTNDQID-NLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~-~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
+..++.+... ++...+. .. ....++|...+|+..+|..|-.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~-g~----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIH-GL----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCCHHHHHHHHHHHHT-TS----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHc-CC----CCHHHHHHHhCCCHHHHHHHHH
Confidence 4457776644 4444433 22 2356889999999999999963
No 216
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.41 E-value=32 Score=24.21 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-.. ....||...|++...|-.+|.|+-.=..
T Consensus 15 l~AA~~lf~~~G~~~~-s~~~IA~~AGvs~gtlY~~F~sKe~L~~ 58 (203)
T 2np5_A 15 AAALFDVAAESGLEGA-SVREVAKRAGVSIGAVQHHFSTKDEMFA 58 (203)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 4445556777776533 3678899999999999999999765443
No 217
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=24.40 E-value=91 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
..+|..+..+|.-..... ...+||..++++...|++...|=|.|..
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 358898888887665431 3678999999999999998877776654
No 218
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=24.24 E-value=80 Score=20.41 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCCCchhHhhhhh
Q psy4868 63 TSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGLPEARIQVWFS 107 (169)
Q Consensus 63 t~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l~~~qV~~WFq 107 (169)
..++.++...|...|.. +.+.+..+...+....+++...|..+|.
T Consensus 6 w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 6 WAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp SSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35678888888888863 4467777777766667788777777663
No 219
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=24.22 E-value=84 Score=18.78 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhC--CCchhHhhhh
Q psy4868 67 NDQIDNLEKEFER-----THYPDVFARERLAAKIG--LPEARIQVWF 106 (169)
Q Consensus 67 ~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~--l~~~qV~~WF 106 (169)
..+...|...|.. +.+.+..+...+...+| ++..+|..+|
T Consensus 5 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 5 TDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp CHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4455566666642 34667777777666666 4555565555
No 220
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=23.97 E-value=1.1e+02 Score=20.36 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=31.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhh
Q psy4868 59 QRNRTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWF 106 (169)
Q Consensus 59 rr~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF 106 (169)
.+.+..++..++..|...|.. +.+.+..+...+...+|+ +...|...|
T Consensus 16 ~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 16 KKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp ----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 445678999999999999964 456778888777777765 334444443
No 221
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.95 E-value=1.1e+02 Score=20.10 Aligned_cols=46 Identities=13% Similarity=0.354 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WFq 107 (169)
.+.++..++..|...|.. +.+.+..+...+...+|+ +..+|...|.
T Consensus 7 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 7 RVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 567999999999999963 457888888777777664 4455555543
No 222
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=23.93 E-value=1.3e+02 Score=19.54 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhh
Q psy4868 61 NRTSFTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWF 106 (169)
Q Consensus 61 ~Rt~~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF 106 (169)
....++..++..|...|.. +.+.+..+...+...+|+ +...|...|
T Consensus 13 ~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 65 (161)
T 3fwb_A 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLI 65 (161)
T ss_dssp TTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4567999999999999964 457788888777777764 445555555
No 223
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=23.83 E-value=1.3e+02 Score=19.20 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHhCC--CchhHhhhh
Q psy4868 65 FTNDQIDNLEKEFER-----THYPDVFARERLAAKIGL--PEARIQVWF 106 (169)
Q Consensus 65 ~t~~q~~~Le~~F~~-----~~~p~~~~~~~La~~l~l--~~~qV~~WF 106 (169)
+++.++..|...|.. +.+.+..+...+...+|+ +...|..+|
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 50 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKIL 50 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 567778888888742 446777777766666654 345555555
No 224
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=23.67 E-value=63 Score=22.41 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 18 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~sKe~L~ 60 (197)
T 2hyt_A 18 LATARKVFSERGYADT-SMDDLTAQASLTRGALYHHFGDKKGLL 60 (197)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCTTHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4455566888887543 367889999999999999999876543
No 225
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=23.64 E-value=48 Score=23.15 Aligned_cols=43 Identities=16% Similarity=0.403 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 17 l~aA~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 59 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKT-TMNEIASDVGMGKASLYYYFPDKETLF 59 (216)
T ss_dssp HHHHHHHHHHHCSSSC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 4455556888877543 367789999999999999999976543
No 226
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=23.62 E-value=59 Score=22.53 Aligned_cols=41 Identities=12% Similarity=0.220 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
+......|....|-.. ....||...|++...|-..|.|+-.
T Consensus 23 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~ 63 (207)
T 2rae_A 23 STVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKNA 63 (207)
T ss_dssp HHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTTT
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHHH
Confidence 4445555777777543 3678899999999999999998753
No 227
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=23.49 E-value=62 Score=22.59 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 71 DNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 71 ~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
......|....|-.. ....||...|++...|-.+|.|+-.=.
T Consensus 24 ~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~ 65 (218)
T 3gzi_A 24 LAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKLF 65 (218)
T ss_dssp HHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 344455777777543 367789999999999999999876543
No 228
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=23.42 E-value=31 Score=24.05 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=24.5
Q ss_pred HHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 76 EFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 76 ~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
.|....|-. .....||...|++...|-.+|.|+-.=
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L 72 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTRM 72 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHHH
Confidence 455555543 346788999999999999999987653
No 229
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.24 E-value=61 Score=22.21 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-.+|.++-.=.
T Consensus 23 l~aa~~l~~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (206)
T 3kz9_A 23 MEIALEVFARRGIGRG-GHADIAEIAQVSVATVFNYFPTREDLV 65 (206)
T ss_dssp HHHHHHHHHHSCCSSC-CHHHHHHHHTSCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhcCcccc-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344455777776543 367789999999999999999975543
No 230
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=23.20 E-value=58 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-... ...||...|++...|-.+|.|+-.=..
T Consensus 16 l~aA~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L~~ 59 (210)
T 3vib_A 16 MLAALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDLFD 59 (210)
T ss_dssp HHHHHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHHHH
Confidence 33444568888875533 678899999999999999999765443
No 231
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=23.15 E-value=61 Score=22.69 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-. .....||...|++...|-.+|.|+-.=
T Consensus 36 l~aA~~l~~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 36 IRAGLEHLTEKGYSS-VGVDEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHSCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCCc-CcHHHHHHHhCCCcchhhhhCCCHHHH
Confidence 444555577777654 346788999999999999999997654
No 232
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=23.01 E-value=63 Score=22.25 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|..+|.++-.=..
T Consensus 10 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 53 (185)
T 2yve_A 10 LRTAIDYIGEYSLET-LSYDSLAEATGLSKSGLIYHFPSRHALLL 53 (185)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHCCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcChhh-ccHHHHHHHhCCChHHHHHhCcCHHHHHH
Confidence 444555677777643 34678899999999999999998765443
No 233
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=22.87 E-value=60 Score=22.15 Aligned_cols=46 Identities=15% Similarity=0.332 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 68 DQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 68 ~q~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
.=+......|....|-.. ....||...|++...|-..|.|+-.=..
T Consensus 15 ~il~aa~~lf~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (196)
T 3he0_A 15 QILAAAEQLIAESGFQGL-SMQKLANEAGVAAGTIYRYFSDKEHLLE 60 (196)
T ss_dssp HHHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCcccC-CHHHHHHHhCCCcchHHHhcCCHHHHHH
Confidence 335566666888777543 4678899999999999999999766543
No 234
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=22.69 E-value=61 Score=22.28 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-. .....||...|++...|-.+|.++-.=.
T Consensus 18 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (202)
T 3lwj_A 18 LTCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKEDIL 60 (202)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 344555577777643 3467889999999999999999876443
No 235
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=22.37 E-value=51 Score=22.83 Aligned_cols=45 Identities=7% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
+......|....|-. .....||...|++...|-..|.++-.=...
T Consensus 19 l~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 63 (195)
T 2iu5_A 19 AKAFKDLMQSNAYHQ-ISVSDIMQTAKIRRQTFYNYFQNQEELLSW 63 (195)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTSCGGGGGGTCSSHHHHHHH
T ss_pred HHHHHHHHHhCCCCe-eCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 445556677776643 346788999999999999999997765543
No 236
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.35 E-value=67 Score=22.48 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-.. ....||...|++...|-.+|.++-.=..
T Consensus 14 l~aA~~lf~~~G~~~~-s~~~IA~~aGvs~~tiY~~F~sKe~L~~ 57 (202)
T 2d6y_A 14 FEAAVAEFARHGIAGA-RIDRIAAEARANKQLIYAYYGNKGELFA 57 (202)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHHTCCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 4455556777777543 3678899999999999999998765543
No 237
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=22.34 E-value=53 Score=23.18 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-.. ....||...|++..-|-..|.|+-.=..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (219)
T 2w53_A 17 LDAAEACFHEHGVART-TLEMIGARAGYTRGAVYWHFKNKSEVLA 60 (219)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCchHHhhcCCCHHHHHH
Confidence 4555666888887543 3678899999999999999999765543
No 238
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=22.23 E-value=43 Score=21.69 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
..+||..+|++...|..|..+++.
T Consensus 52 q~elA~~~gis~~~is~~E~G~~~ 75 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTAT 75 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467999999999999999987653
No 239
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=22.22 E-value=46 Score=20.40 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 46799999999999999987765
No 240
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=22.21 E-value=42 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=19.5
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999988764
No 241
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.03 E-value=64 Score=22.32 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=
T Consensus 20 l~aa~~l~~~~G~~~~-ti~~IA~~agvs~~t~Y~~F~sK~~L 61 (212)
T 3knw_A 20 LDSGFHLVLRKGFVGV-GLQEILKTSGVPKGSFYHYFESKEAF 61 (212)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCCccC-CHHHHHHHhCCChHHHHHHCCCHHHH
Confidence 4445556777776543 36788999999999999999987653
No 242
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.02 E-value=68 Score=21.68 Aligned_cols=41 Identities=12% Similarity=0.314 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhh-hHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN-RRA 111 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqN-rR~ 111 (169)
+......|....|-.. ....||...|++...|-..|.| +-.
T Consensus 12 l~aa~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~~sK~~ 53 (191)
T 1sgm_A 12 LHTASRLSQLQGYHAT-GLNQIVKESGAPKGSLYHFFPNGKEE 53 (191)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHCCCSCHHHHSTTTCHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHHCCCchhHHHHccccHHH
Confidence 4555566777776543 3677899999999999999998 654
No 243
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=21.88 E-value=1e+02 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=35.8
Q ss_pred CCCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCC--CchhHhhhh
Q psy4868 60 RNRTSFTNDQIDNLEKEFE-----RTHYPDVFARERLAAKIGL--PEARIQVWF 106 (169)
Q Consensus 60 r~Rt~~t~~q~~~Le~~F~-----~~~~p~~~~~~~La~~l~l--~~~qV~~WF 106 (169)
..+..|+.+|+..|+..|. .+.+.+..+...+...||+ +..+|+..|
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf 344 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 344 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3477899999999999996 3557888888888888875 445565544
No 244
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=21.75 E-value=43 Score=21.77 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46789999999999999998765
No 245
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=21.72 E-value=60 Score=22.30 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 60 (203)
T 3b81_A 17 ANKIWDIFIANGYENT-TLAFIINKLGISKGALYHYFSSKEECAD 60 (203)
T ss_dssp HHHHHHHHHHHCSTTC-CHHHHHHHHTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccC-cHHHHHHHhCCCchhHHHHcCCHHHHHH
Confidence 4455556777777543 3678899999999999999999765443
No 246
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.57 E-value=52 Score=21.44 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCchhHhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWF 106 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WF 106 (169)
..++|..+|++...|+.|-
T Consensus 4 i~e~A~~~gvs~~tLR~ye 22 (108)
T 2vz4_A 4 VGQVAGFAGVTVRTLHHYD 22 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999999994
No 247
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.51 E-value=53 Score=19.95 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCchhHhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqN 108 (169)
..+||..+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 567999999999999999875
No 248
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.50 E-value=51 Score=21.46 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCchhHhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWF 106 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WF 106 (169)
..++|..+|++...|+.|-
T Consensus 5 i~e~A~~~gvs~~tLR~ye 23 (109)
T 1r8d_A 5 VKQVAEISGVSIRTLHHYD 23 (109)
T ss_dssp HHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999999994
No 249
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=21.37 E-value=69 Score=22.15 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-..|.|+-.=..
T Consensus 24 l~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 67 (212)
T 1pb6_A 24 LSAALDTFSQFGFHG-TRLEQIAELAGVSKTNLLYYFPSKEALYI 67 (212)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHHcCcch-hhHHHHHHHHCCChhHHHHhCCCHHHHHH
Confidence 344445577777643 34678899999999999999999765433
No 250
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.31 E-value=68 Score=21.93 Aligned_cols=44 Identities=11% Similarity=0.343 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=..
T Consensus 20 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 63 (203)
T 3f1b_A 20 LDAAVDVFSDRGFHET-SMDAIAAKAEISKPMLYLYYGSKDELFA 63 (203)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHhCCchHHHHHHhCCHHHHHH
Confidence 3344455777776443 4678899999999999999999766543
No 251
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=21.28 E-value=46 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCchhHhhhhhh
Q psy4868 88 RERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqN 108 (169)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999987
No 252
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=21.22 E-value=54 Score=19.61 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|-.|+.++.
T Consensus 12 ~~diA~~aGVS~sTVSr~ln~~~ 34 (67)
T 2l8n_A 12 MKDVALKAKVSTATVSRALMNPD 34 (67)
T ss_dssp HHHHHHHTTCCHHHHHHTTTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 67899999999999999998763
No 253
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=21.18 E-value=47 Score=21.22 Aligned_cols=23 Identities=35% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56889999999999999988764
No 254
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=21.15 E-value=63 Score=22.53 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~kk 115 (169)
+..-...|....|-.. ....||...|++...|-.+|.|+-.=..-
T Consensus 15 l~aA~~lf~~~G~~~~-s~~~IA~~aGvsk~tlY~~F~sKe~L~~a 59 (203)
T 3cdl_A 15 VQAAIAEFGDRGFEIT-SMDRIAARAEVSKRTVYNHFPSKEELFAE 59 (203)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHTTSSSHHHHHHH
T ss_pred HHHHHHHHHHcCchhc-CHHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 3444455777777543 36788999999999999999987665443
No 255
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=21.12 E-value=78 Score=21.37 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|...|.|+-.=..
T Consensus 13 l~aA~~l~~~~G~~~~-s~~~IA~~agvs~~tly~~F~sK~~L~~ 56 (180)
T 2fd5_A 13 LGAATQALLERGAVEP-SVGEVMGAAGLTVGGFYAHFQSKDALML 56 (180)
T ss_dssp HHHHHHHHHHHTTTSC-CHHHHHHHTTCCGGGGGGTCSCHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCccHHHHHCCCHHHHHH
Confidence 4445556777777543 4678899999999999999998765443
No 256
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.11 E-value=69 Score=22.15 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k 112 (169)
+......|....|-. .....||...|++...|-.+|.++-.=
T Consensus 20 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L 61 (220)
T 3lhq_A 20 LDVALRLFSQQGVSA-TSLAEIANAAGVTRGAIYWHFKNKSDL 61 (220)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCceeehhhcCCHHHH
Confidence 445556677777654 336778999999999999999987644
No 257
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=21.03 E-value=74 Score=21.41 Aligned_cols=44 Identities=14% Similarity=0.281 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...+-..|.|+-.=..
T Consensus 14 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~ 57 (188)
T 3qkx_A 14 FSATDRLMAREGLNQ-LSMLKLAKEANVAAGTIYLYFKNKDELLE 57 (188)
T ss_dssp HHHHHHHHHHSCSTT-CCHHHHHHHHTCCHHHHHHHSSSHHHHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCCcchHHHHcCCHHHHHH
Confidence 445556677777654 34678899999999999999998765443
No 258
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=21.02 E-value=54 Score=23.87 Aligned_cols=44 Identities=7% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-.+|.|+-.=..
T Consensus 52 l~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 52 ITSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 444555577776643 33678899999999999999999766543
No 259
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.99 E-value=92 Score=22.18 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHhCCCchhHhhhhhh
Q psy4868 64 SFTNDQIDNLEKEFERTHYPD----VFARERLAAKIGLPEARIQVWFSN 108 (169)
Q Consensus 64 ~~t~~q~~~Le~~F~~~~~p~----~~~~~~La~~l~l~~~qV~~WFqN 108 (169)
.|+.++.......-...-.|. .....+||..||++...+..|-..
T Consensus 23 ~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 478877666543322111111 124678999999999999999764
No 260
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=20.96 E-value=1.2e+02 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.536 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHhCCCc-----hhHhhhhhhh
Q psy4868 81 HYPDVFARERLAAKIGLPE-----ARIQVWFSNR 109 (169)
Q Consensus 81 ~~p~~~~~~~La~~l~l~~-----~qV~~WFqNr 109 (169)
--.+...|.+||.+|+++. .+.-+|..-.
T Consensus 79 lDsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~ 112 (130)
T 2gqb_A 79 IDSSLSARKELAKELGYSGDMNDSASMNIWLHKQ 112 (130)
T ss_dssp CCCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhCCCCCCCccHHHHHHHHHH
Confidence 3477889999999999873 5677898643
No 261
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=20.91 E-value=71 Score=22.41 Aligned_cols=44 Identities=18% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-.. ....||...|++...|-..|.|+-.=..
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 17 LDAAERVFLEKGVGTT-AMADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3344455888777543 3678899999999999999998765443
No 262
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=20.85 E-value=54 Score=22.72 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-. .....||...|++...|-.+|.|+-.=.
T Consensus 14 l~aA~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~L~ 56 (199)
T 2o7t_A 14 ITTTCNLYRTHHHDS-LTMENIAEQAGVGVATLYRNFPDRFTLD 56 (199)
T ss_dssp HHHHHHHHHHSCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHCCCcc-CCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 444555577766643 3467889999999999999999875543
No 263
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.68 E-value=58 Score=22.72 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....|-.. ....||...|++...|-.+|.|+-.=.
T Consensus 17 l~aA~~lf~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~sK~~L~ 59 (212)
T 2ras_A 17 VDVAQAIVEERGGAGL-TLSELAARAGISQANLSRYFETREDLM 59 (212)
T ss_dssp HHHHHHHHHHHTSSCC-CHHHHHHHHTSCHHHHTTTCSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3444556777777543 367889999999999999999976543
No 264
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.61 E-value=1.8e+02 Score=19.63 Aligned_cols=44 Identities=16% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHhCCCchhH-hhh
Q psy4868 62 RTSFTNDQIDNLEKEFER----THYPDVFARERLAAKIGLPEARI-QVW 105 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~----~~~p~~~~~~~La~~l~l~~~qV-~~W 105 (169)
...+++++...+...|.. +.+.+..+...+-...+|+...+ ++|
T Consensus 24 ~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 24 TWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 456788889999999864 34677777777777788887664 455
No 265
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.57 E-value=47 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 73 LEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 73 Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
-...|... .......||...|++...|-.+|.|+-.=.
T Consensus 23 A~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 60 (190)
T 2v57_A 23 AMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLL 60 (190)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 33445554 556678899999999999999999976544
No 266
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.56 E-value=48 Score=21.30 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45677777888877777776654
No 267
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=20.52 E-value=55 Score=22.60 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-. .....||...|++...|-.+|.|+-.=..
T Consensus 15 l~aa~~l~~~~G~~~-~ti~~IA~~agvs~~t~Y~~F~sK~~L~~ 58 (193)
T 2dg8_A 15 LAATLDLIAEEGIAR-VSHRRIAQRAGVPLGSMTYHFTGIEQLLR 58 (193)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCchhhheeCCCHHHHHH
Confidence 445555677777643 34678899999999999999998765443
No 268
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=20.51 E-value=45 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56889999999999999998874
No 269
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.42 E-value=53 Score=23.14 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+......|....|-.. ....||...|++...|-.+|.|+-.=..
T Consensus 14 l~aA~~lf~~~Gy~~~-s~~~IA~~AGvs~gt~Y~yF~sKe~L~~ 57 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQS-QVSKIAKQAGVADGTIYLYFKNKEDILI 57 (206)
T ss_dssp HHHHHHHHHHHCGGGC-CHHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 4455566777776543 3678899999999999999999765433
No 270
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=20.41 E-value=1.7e+02 Score=19.07 Aligned_cols=45 Identities=4% Similarity=0.034 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh-CCCchhHhhhhh
Q psy4868 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKI-GLPEARIQVWFS 107 (169)
Q Consensus 62 Rt~~t~~q~~~Le~~F~~~~~p~~~~~~~La~~l-~l~~~qV~~WFq 107 (169)
-..+|.+.-.++...|+... ++......||.+| +-++.||..-||
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G-~s~~tFa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQG-AQPHTFSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHHSSCCHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcC-CChhHHHHHHHHHccCCHHHHHHHHH
Confidence 34577777777777777643 3333456699999 599999999886
No 271
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=20.36 E-value=49 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 56789999999999999987754
No 272
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=20.27 E-value=55 Score=22.54 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRA 111 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~ 111 (169)
+......|....|-.. ....||...|++...|-.+|.++-.
T Consensus 13 l~aA~~l~~~~G~~~~-t~~~Ia~~agvs~~t~Y~~F~sK~~ 53 (195)
T 2dg7_A 13 KRAALELYSEHGYDNV-TVTDIAERAGLTRRSYFRYFPDKRE 53 (195)
T ss_dssp HHHHHHHHHHSCGGGC-CHHHHHHHTTCCHHHHHHHCSSTTG
T ss_pred HHHHHHHHHhcCcccc-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4455556777766433 3678899999999999999988754
No 273
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=20.27 E-value=50 Score=21.37 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCchhHhhhhhhhH
Q psy4868 88 RERLAAKIGLPEARIQVWFSNRR 110 (169)
Q Consensus 88 ~~~La~~l~l~~~qV~~WFqNrR 110 (169)
..+||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998776
No 274
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=20.17 E-value=70 Score=22.22 Aligned_cols=43 Identities=7% Similarity=0.174 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+......|....|-.. ....||...|++...|-..|.|+-.=.
T Consensus 15 l~aA~~lf~~~G~~~~-t~~~Ia~~Agvs~gt~Y~yF~sKe~L~ 57 (204)
T 3anp_C 15 FRAAMELFRNRGFQET-TATEIAKAAHVSRGTFFNYYPYKEAVL 57 (204)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCchHHHHHHcCCHHHHH
Confidence 4455566888777543 367889999999999999999876543
No 275
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=20.17 E-value=66 Score=22.45 Aligned_cols=44 Identities=14% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~k 114 (169)
+..-...|....|-... ...||...|++..-|-.+|.|+-.=..
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~IA~~agvsk~tlY~yF~sKe~L~~ 63 (199)
T 3crj_A 20 MQATYRALREHGYADLT-IQRIADEYGKSTAAVHYYYDTKDDLLA 63 (199)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHHTSCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCChhHHhhhcCCHHHHHH
Confidence 34445568888776533 677899999999999999998765443
No 276
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=20.04 E-value=76 Score=21.51 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....|-... ...||...|++...|-..|.|+-.=.
T Consensus 8 l~aA~~lf~~~Gy~~~s-~~~Ia~~agvskgtlY~~F~sKe~L~ 50 (179)
T 2eh3_A 8 LEVSKELFFEKGYQGTS-VEEIVKRANLSKGAFYFHFKSKEELI 50 (179)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCcHHHHHHcCCHHHHH
Confidence 34445567777775433 67889999999999999999876543
No 277
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=20.01 E-value=76 Score=22.51 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhCCCchhHhhhhhhhHHHH
Q psy4868 70 IDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113 (169)
Q Consensus 70 ~~~Le~~F~~~~~p~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 113 (169)
+..-...|....|-.. ....||...|++...|..+|.|+-.=.
T Consensus 41 l~aA~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sKe~L~ 83 (221)
T 3g7r_A 41 LGTATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGKDDLI 83 (221)
T ss_dssp HHHHHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCHHHHH
Confidence 3444455777776543 367789999999999999999876543
Done!