RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4868
(169 letters)
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 91.4 bits (227), Expect = 1e-25
Identities = 60/66 (90%), Positives = 63/66 (95%)
Query: 59 QRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
QRNRTSFT +QI+ LEKEFERTHYPDVFARERLAAKI LPEARIQVWFSNRRAKWRREEK
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 119 LRNQRQ 124
LRNQR+
Sbjct: 62 LRNQRR 67
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 81.8 bits (202), Expect = 8e-22
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 56 RKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
R ++ R +T Q LEKEF Y R +A + L E ++++WF NRR K ++
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
Query: 116 EEKLRNQ 122
K R +
Sbjct: 71 INKDRAK 77
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 79.4 bits (196), Expect = 3e-21
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
R ++T Q LEKEF Y R +A + L E +I++WF NRR KW++E
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 79.5 bits (196), Expect = 4e-21
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
K R RT Q+ L + PD +E+L GL I+VWF N+R K ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 117 EKL 119
+
Sbjct: 62 SIM 64
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 77.2 bits (190), Expect = 3e-20
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
R RT+FT DQ+ LEKEF + +Y R LAA++ LPE+ I+VWF NRR K +R+
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 76.8 bits (189), Expect = 4e-20
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+ F+NDQ LEK+FE Y R+RLA + L E +++ WF NRRAKWRR
Sbjct: 2 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 75.3 bits (185), Expect = 2e-19
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 57 KLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
K +R+RT+F+ Q+D LE+ FERT YPD++ RE LA + L EARIQVWF NRRA+ R++
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 117 EK 118
Sbjct: 61 HT 62
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 75.3 bits (185), Expect = 2e-19
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+ R ++ Q+ LE+E+ + R +++A L E +I +WF NRR K ++
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 75.8 bits (186), Expect = 2e-19
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
RT+FT Q+ LEKEF Y R +AA + L E ++++WF NRR K ++ E+
Sbjct: 29 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 74.6 bits (183), Expect = 3e-19
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+ RT FT Q+ LE++F + Y + R ++ + L E ++++WF NRRAK +R
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 74.2 bits (182), Expect = 4e-19
Identities = 31/58 (53%), Positives = 39/58 (67%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREE 117
R RT FT+ Q+ LE F+R YPD+ RE +A L EAR++VWF NRRAKWR+ E
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 73.4 bits (180), Expect = 7e-19
Identities = 22/53 (41%), Positives = 38/53 (71%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAK 112
R RT+F+++Q+ L++EF Y R++L++++GL EA+I++WF N RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 73.4 bits (180), Expect = 1e-18
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
+ RT+ + D LE+ F P R+A ++ L + ++VWF NRR + +R
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 73.5 bits (180), Expect = 1e-18
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 60 RNRTSFTNDQIDNLEKEFERT-HYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
+ T DQ++ LE F + +PD +AA+ GL E + Q WF R A+WRR E
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 119 LRNQR 123
L ++
Sbjct: 63 LPSEC 67
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 72.7 bits (178), Expect = 2e-18
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119
+ R F+ Q+ LE+ F++ Y RE LA+ I L ++++WF N R K +R+ K
Sbjct: 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63
Query: 120 RNQRQ 124
+ +Q
Sbjct: 64 KAAQQ 68
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 72.4 bits (177), Expect = 4e-18
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKI---------------GLPEARIQV 104
+R ++ + + +E F YPD RE +A + ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 105 WFSNRRAKWRREEKL 119
WF+NRR + +R +
Sbjct: 62 WFANRRKEIKRRANI 76
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 71.1 bits (174), Expect = 7e-18
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
R RT+FT+ QI LE+ F + Y L+AK+ L A++++WF NRR + + +
Sbjct: 3 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 69.9 bits (171), Expect = 1e-17
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
++S + LE+ F R + +E +A K G+ +++VWF N+R + +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 68.5 bits (167), Expect = 8e-17
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113
L + +R RTS N +LE F + P + +A ++GL + ++VWF NRR K
Sbjct: 4 LVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKG 63
Query: 114 RR 115
+R
Sbjct: 64 KR 65
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 68.9 bits (168), Expect = 8e-17
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 54 LKRKLQRNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKW 113
L K ++ R FT Q LE+ F + Y RE LA+ I L ++++WF N R K
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 114 RREEK 118
+R +
Sbjct: 65 KRAQN 69
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 66.3 bits (162), Expect = 4e-16
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 66 TNDQIDNLEKEF-ERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
T LEK F T +PD E L+ ++ IQ WF RR + +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 65.7 bits (160), Expect = 8e-16
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRR 110
R FT+ Q L F+ P + ++ ++GL + + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 64.4 bits (157), Expect = 2e-15
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 60 RNRTSFTNDQIDNLEKEFER-THYPDVFARERLAAKIGLPEARIQVWFSNRRAKWR 114
++ + D LEK F T YPD + L+ ++ +IQ WF +RR + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 64.2 bits (156), Expect = 5e-15
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 60 RNRTSFTNDQIDNLEKEFE---RTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRRE 116
R R +F + L + F YP A+E LA K G+ +++ WF N+R ++++
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 117 EKLRNQR 123
+
Sbjct: 63 IGKFQEE 69
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 63.4 bits (154), Expect = 7e-15
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
RTS + LEK F P +A ++ + + I+VWFSNRR K +R
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 62.1 bits (151), Expect = 2e-14
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 65 FTNDQIDNLEKEFE---RTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR 115
FT + + LE F Y D E L L +I+ W SNRR K +
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 61.3 bits (148), Expect = 7e-14
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 60 RNRTSFTNDQIDNLEKEFERT-HYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEK 118
R+RT + + + L+ YPD A L+A++ LP+ I +F N+R +
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 60.1 bits (146), Expect = 1e-13
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 60 RNRTSFTNDQIDNLEKEFERTH---YPDVFARERLAAKIGLPEARIQVWFSNRRAK 112
R + + + YP ++++AA+ L ++ WF N R +
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 60.4 bits (146), Expect = 1e-13
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 55 KRKLQRNRTSFTNDQIDNLEKEFER----THYPDVFARERLAAKIGLPEARIQVWFSNRR 110
+R RT FT +Q + + ER D A E+ A+ G+ +++W N +
Sbjct: 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNK 73
Query: 111 AKWRRE 116
Sbjct: 74 NSGPSS 79
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 59.0 bits (142), Expect = 6e-13
Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 21/78 (26%)
Query: 62 RTSFTNDQIDNLEKEFERTHYPDVFARERLAAKI---------------------GLPEA 100
R + L + +ER P RE L + + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 101 RIQVWFSNRRAKWRREEK 118
R+ WF+NRR + K
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 54.3 bits (130), Expect = 3e-11
Identities = 12/69 (17%), Positives = 25/69 (36%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRREEKL 119
+ T +Q+ L+ F + RL A+ L I WF+ ++ +E+
Sbjct: 6 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEK 65
Query: 120 RNQRQRGSA 128
+ +
Sbjct: 66 MEIDESNAG 74
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.3 bits (117), Expect = 3e-09
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 60 RNRTSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSNRRAKWRR-EEK 118
+ T +Q+ L+ F + + ++L GLP I WF + R + + K
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64
Query: 119 LRNQRQRG 126
G
Sbjct: 65 WFRDNASG 72
>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit
3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Length = 161
Score = 25.9 bits (57), Expect = 2.2
Identities = 5/46 (10%), Positives = 12/46 (26%)
Query: 63 TSFTNDQIDNLEKEFERTHYPDVFARERLAAKIGLPEARIQVWFSN 108
+ + + L + LP+ + +SN
Sbjct: 73 KMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSN 118
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 24.5 bits (53), Expect = 7.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 38 NPGSNLEPEDDQARLRLKRKLQRNRT 63
S L+ E + +R K+ + RT
Sbjct: 165 EATSALDYESEHVIMRNMHKICKGRT 190
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
{Aquifex aeolicus [TaxId: 63363]}
Length = 187
Score = 24.2 bits (52), Expect = 8.1
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 80 THYPDVFARERLAAKIGLPEARIQVW--FSNRRAKWRREEKLRNQRQRGSADPTQA 133
+ + + A LP+A + + RA RR L+ + G P Q
Sbjct: 126 GKHVWELSLDEAALLAALPKAPAKYNPFYHPERALQRRNLVLKRMLEEGYITPEQY 181
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.2 bits (50), Expect = 9.6
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 128 ADPTQAPNNNNNNIVNNNNNSSDGCTPSPAPQ 159
P P + I+N + N S P P
Sbjct: 14 KSPPILPPHLLQVILNKDTNISCDPALLPEPN 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.129 0.378
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 628,685
Number of extensions: 27736
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 41
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.2 bits)