BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4869
(2435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 155/579 (26%), Positives = 275/579 (47%), Gaps = 56/579 (9%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G V ++ + D +A A + ++K ++ + ++ T TGH S++ + + P G
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQ 111
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA 190
+A+ S D + LW+ + L L+GH + + F P + S++ D VK+W+
Sbjct: 112 TIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLWNR 168
Query: 191 DTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXX 250
+ G +T+ H + VWGV + + S S+D +K+WN R+ + T
Sbjct: 169 N-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT-----LTGHS 221
Query: 251 XXXXXXXDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGID 310
PD Q I + T K W + +L ++ + +++ AF D
Sbjct: 222 SSVRGVAFSPD-------GQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVNGVAFRPD 273
Query: 311 TTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKY 370
+++ +D+ TV +N ++ + L GH ++ +
Sbjct: 274 G------QTIASASDDKTVKLWNRNGQL----------------LQTLTGHSSSVWGVAF 311
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430
PDGQ IAS+ D+ + +W+ G+ ++ ++GH+ +V + FS DG I + S D+T+
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 369
Query: 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY 490
+W+ GQ ++ + GHS+ V GQ IAS SDD TVK+W+ + ++
Sbjct: 370 LWN-RNGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 491 QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA 550
V VAF+ + + + D +K+W+ R ++Q L GHS +V G++ SPDG I S +
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 551 MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610
D TV++W+ + ++ ++GH ++ A+S G + + S DK V +W+
Sbjct: 487 DDKTVKLWNRNG-----QLLQTLTGH----SSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Query: 611 TTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+ + L GH+ SV V F P I SASSDKT+ L
Sbjct: 538 NGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 146/541 (26%), Positives = 253/541 (46%), Gaps = 55/541 (10%)
Query: 109 VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFM 168
++ T TGH S++ + + P G +A+ S D + LW+ + L L+GH + + F
Sbjct: 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAF- 106
Query: 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228
P + S++ D VK+W+ + G +T+ H + VWGV + + S S+D +K
Sbjct: 107 -SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 229 VWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288
+WN R+ + T PD Q I + T K W +
Sbjct: 165 LWN-RNGQLLQT-----LTGHSSSVWGVAFSPD-------GQTIASASDDKT-VKLWNRN 210
Query: 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348
+L ++ + ++ AF D +++ +D+ TV +N ++
Sbjct: 211 GQLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNGQL---------- 254
Query: 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAV 408
+ L GH + + PDGQ IAS+ D+ + +W+ G+ + ++GH+ +V
Sbjct: 255 ------LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSV 306
Query: 409 MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD 468
+ FS DG I + S D+T+ +W+ GQ ++ + GHS+ V GQ IAS SD
Sbjct: 307 WGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQ-TIASASD 364
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR 528
D TVK+W+ + ++ V VAF+ + + + D +K+W+ R ++Q L
Sbjct: 365 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 423
Query: 529 GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
GHS +V G++ SPD I S + D TV++W+ + ++ ++GH ++ A
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-----GQLLQTLTGH----SSSVRGVA 474
Query: 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIY 648
+S G + + S DK V +W+ ++ L GH+ SV V F P I SAS DKT+
Sbjct: 475 FSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 533
Query: 649 L 649
L
Sbjct: 534 L 534
Score = 174 bits (441), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 164/552 (29%), Positives = 235/552 (42%), Gaps = 78/552 (14%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTG--SYALSVCFVPGDRH 939
GH S VR +AFS D + SA + VK+WNR L+T+ TG S V F P D
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP-DGQ 152
Query: 940 VLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK 999
+ D + + + G++L+ + HS +W VA PD + + DK
Sbjct: 153 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT----------IASASDDK 202
Query: 1000 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059
+VKLW NR LL T T V SPD + +A +
Sbjct: 203 TVKLW-------NRNGQ--------------LLQTLTGH-SSSVRGVAFSPDGQTIASAS 240
Query: 1060 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119
D TVK++ + + +L GH V + D IA+ S D+TVK+W + G ++
Sbjct: 241 DDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQT 298
Query: 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
L H SV GV F P + S D VK W+ + +L GH V +
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------QHLQTLTGHSSSVWGVA 351
Query: 1180 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
S D IA+ S D+TVK+W + G ++L H SV GV F P + S D VK
Sbjct: 352 FSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410
Query: 1240 QWDADNFERIVTLHFNPN-----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETK 1294
W+ N + + TL + + + P + + DK+VKLW NR
Sbjct: 411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW-------NRNGQ---- 458
Query: 1295 DVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354
LL T T V SPD + +A + D TVK++ + + +L G
Sbjct: 459 ----------LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 506
Query: 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1414
H V + S D IA+ S D+TVK+W + G ++L H SV GV F P
Sbjct: 507 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIA 565
Query: 1415 TTSKDGRVKQWD 1426
+ S D VK W+
Sbjct: 566 SASSDKTVKLWN 577
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 167/570 (29%), Positives = 242/570 (42%), Gaps = 79/570 (13%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTG--SYALSVCFVPGDR 938
+ H S VR +AFS D + SA + VK+WNR L+T+ TG S V F P D
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL-TGHSSSVWGVAFSP-DG 69
Query: 939 HVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD 998
+ D + + + G++L+ + HS + VA PD + + D
Sbjct: 70 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT----------IASASDD 119
Query: 999 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1058
K+VKLW NR LL T T V SPD + +A +
Sbjct: 120 KTVKLW-------NRNGQ--------------LLQTLTGH-SSSVWGVAFSPDGQTIASA 157
Query: 1059 LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118
D TVK++ + + +L GH V + S D IA+ S D+TVK+W + G +
Sbjct: 158 SDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 215
Query: 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL 1178
+L H SV GV F P + S D VK W+ + +L GH V +
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVNGV 268
Query: 1179 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1238
D IA+ S D+TVK+W + G ++L H SV GV F P + S D V
Sbjct: 269 AFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 1239 KQWDADNFERIVTLHFNPN-----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293
K W+ N + + TL + + + P + + DK+VKLW NR
Sbjct: 328 KLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-------NRNGQ--- 376
Query: 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY 1353
LL T T V SPD + +A + D TVK++ + + +L
Sbjct: 377 -----------LLQTLTGH-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT 423
Query: 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1413
GH V + S D IA+ S D+TVK+W + G ++L H SV GV F P
Sbjct: 424 GHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 482
Query: 1414 FTTSKDGRVKQWDADNFERIVTLHICSCSL 1443
+ S D VK W+ N + + TL S S+
Sbjct: 483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSV 511
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 144/545 (26%), Positives = 250/545 (45%), Gaps = 63/545 (11%)
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+RL H + + F P + S++ D VK+W+ + G +T+ H + VWGV
Sbjct: 10 NRLEAHSSSVRGVAF--SPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFS 66
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQII 272
+ + S S+D +K+WN R+ + T PD Q I
Sbjct: 67 PDGQTIASASDDKTVKLWN-RNGQLLQT-----LTGHSSSVRGVAFSPD-------GQTI 113
Query: 273 NELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDR 332
+ T K W + +L ++ + ++ AF D +++ +D+ TV +
Sbjct: 114 ASASDDKT-VKLWNRNGQLLQTLTGHSSSVWGVAFSPD------GQTIASASDDKTV--K 164
Query: 333 EKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY 392
N Q +Q G +S+++ + PDGQ IAS+ D+ + +W+
Sbjct: 165 LWNRNGQLLQTLTGHSSSVWGVA--------------FSPDGQTIASASDDKTVKLWNRN 210
Query: 393 GECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS 452
G+ + ++GH+ +V + FS DG I + S D+T+ +W+ GQ ++ + GHS+ VN
Sbjct: 211 GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNG 267
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
GQ IAS SDD TVK+W+ + ++ V VAF+ + + + D
Sbjct: 268 VAFRPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 326
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+K+W+ R +Q L GHS +V G++ SPDG I S + D TV++W+ + ++
Sbjct: 327 VKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQT 380
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
++GH ++ A+S G + + S DK V +W+ ++ L GH+ SV V F
Sbjct: 381 LTGH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFS 435
Query: 633 PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGR---VHTMVNDKHRQILCCHGNDN 689
P + I SAS DKT+ L ++ G +L++ G V + Q + +D
Sbjct: 436 PDDQTIASASDDKTVKL------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 489
Query: 690 VVDLF 694
V L+
Sbjct: 490 TVKLW 494
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 119/500 (23%), Positives = 219/500 (43%), Gaps = 55/500 (11%)
Query: 29 VTLKNQEGRFLATGASEDVIIWDLRLA-EKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
V L N+ G+ L T +W + + + + + + L ++ Q H S
Sbjct: 122 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 181
Query: 88 SQLAVAYT--NGSLKTFSLDTT--------DVISTFTGHKSAITVIQYDPLGHRLATGSK 137
S VA++ ++ + S D T ++ T TGH S++ + + P G +A+ S
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 138 DTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK 197
D + LW+ + L L+GH + + F +P + S++ D VK+W+ + G +
Sbjct: 242 DKTVKLWNRNGQL-LQTLTGHSSSVNGVAF--RPDGQTIASASDDKTVKLWNRN-GQLLQ 297
Query: 198 TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXX 257
T+ H + VWGV + + S S+D +K+WN R+ + T
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQT-----LTGHSSSVWGVA 351
Query: 258 DEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRT 317
PD Q I + T K W + +L ++ + ++ AF D
Sbjct: 352 FSPD-------GQTIASASDDKT-VKLWNRNGQLLQTLTGHSSSVRGVAFSPD------G 397
Query: 318 RSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI 377
+++ +D+ TV +N ++ + L GH ++ + PD Q I
Sbjct: 398 QTIASASDDKTVKLWNRNGQL----------------LQTLTGHSSSVWGVAFSPDDQTI 441
Query: 378 ASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437
AS+ D+ + +W+ G+ + ++GH+ +V + FS DG I + S D+T+ +W+ G
Sbjct: 442 ASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 498
Query: 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF 497
Q ++ + GHS+ V GQ IAS SDD TVK+W+ + ++ V VAF
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF 557
Query: 498 NDTAECVLTGGIDNDIKMWD 517
+ + + + D +K+W+
Sbjct: 558 SPDGQTIASASSDKTVKLWN 577
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 136/255 (53%), Gaps = 14/255 (5%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
+ L GH ++ + PDGQ IAS+ D+ + +W+ G+ + ++GH+ +V + FS
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFS 394
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DG I + S D+T+ +W+ GQ ++ + GHS+ V Q IAS SDD TVK+
Sbjct: 395 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQT-IASASDDKTVKL 452
Query: 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
W+ + ++ V VAF+ + + + D +K+W+ R ++Q L GHS +V
Sbjct: 453 WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 511
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594
G++ SPDG I S + D TV++W+ + ++ ++GH ++ A+S G
Sbjct: 512 RGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGH----SSSVWGVAFSPDGQ 562
Query: 595 YVTAGSADKCVYIWD 609
+ + S+DK V +W+
Sbjct: 563 TIASASSDKTVKLWN 577
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 160/371 (43%), Gaps = 40/371 (10%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L H V + S D IA+ S D+TVK+W + G ++L H SV GV F P
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
+ S D VK W+ + +L GH V + S D IA+ S D+TVK
Sbjct: 71 TIASASDDKTVKLWNRNG-------QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257
+W + G ++L H SV GV F P + S D VK W+ N + + TL + +
Sbjct: 124 LWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 181
Query: 1258 -----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312
+ P + + DK+VKLW NR LL T T
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLW-------NRNGQ--------------LLQTLT-G 219
Query: 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1372
V SPD + +A + D TVK++ + + +L GH V + D IA
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1432
+ S D+TVK+W + G ++L H SV GV F P + S D VK W+ N +
Sbjct: 279 SASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQH 336
Query: 1433 IVTLHICSCSL 1443
+ TL S S+
Sbjct: 337 LQTLTGHSSSV 347
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 124/281 (44%), Gaps = 40/281 (14%)
Query: 874 RHLRSIHAQGHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYAL-SV 931
+HL+++ GH S V +AFS D + SA + VK+WNR L+T+ S ++ V
Sbjct: 335 QHLQTL--TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGV 391
Query: 932 CFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQ 991
F P D + D + + + G++L+ + HS +W VA PD
Sbjct: 392 AFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT---------- 440
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1051
+ + DK+VKLW NR LL T T V SPD
Sbjct: 441 IASASDDKTVKLW-------NRNGQ--------------LLQTLTGH-SSSVRGVAFSPD 478
Query: 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1111
+ +A + D TVK++ + + +L GH V + S D IA+ S D+TVK+W
Sbjct: 479 GQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 537
Query: 1112 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
+ G ++L H SV GV F P + S D VK W+
Sbjct: 538 N-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 116 HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHF 175
H S++ + + P G +A+ S D + LW+ + L L+GH + + F P
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAF--SPDGQT 71
Query: 176 VVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ S++ D VK+W+ + G +T+ H + V GV + + S S+D +K+WN
Sbjct: 72 IASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 126
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 174/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A + L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 73
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 132
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 246
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 646 TIYLGES 652
TI L +S
Sbjct: 307 TIKLWKS 313
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------VK 140
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
T +L H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 261 DNMVYIWNLQ 270
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 129
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 229
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 290 CHPTENIIASAALENDKTIKLWKSD 314
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 73
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 74 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 122
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T +L H PV ++ + D +LI + S D ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 79
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 80 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 232 VR 233
V+
Sbjct: 139 VK 140
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 147 TLPAHS----DPVSAVHFN 161
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 62 PGEKHEALL--LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA 119
P + + AL+ L G V + + + LA + + +K + T +GHK
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 120 ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSS 179
I+ + + + L + S D + +WDV + L L GH + F P + +VS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSG 128
Query: 180 AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ D V+IWD TG C KT+ AH V V R+ S ++S S D ++W+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 133
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1154 D 1154
D
Sbjct: 314 D 314
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/334 (21%), Positives = 133/334 (39%), Gaps = 51/334 (15%)
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLW 1278
++ + S D +K WD + + + TL + N + P +V+G D+SV++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTV 1338
++ + + VS H + D L+ S D
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVH---------------------FNRDGSLIVSSSYDGLC 176
Query: 1339 KIFFLDTFKFFISLYGHKLPVLS-LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1397
+I+ + + +L P +S + S + I + D T+K+W G C K+ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 1398 ED---------SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMN 1448
++ SVTG ++ + S+D V W+ E + L +
Sbjct: 237 KNEKYCIFANFSVTGGKWI------VSGSEDNMVYIWNLQTKEIVQKLQ-------GHTD 283
Query: 1449 SVHLNSCPALEASNDIAELLMECLATMKEYEVEC 1482
V +C E N IA +E T+K ++ +C
Sbjct: 284 VVISTACHPTE--NIIASAALENDKTIKLWKSDC 315
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 241
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ + L LP V +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVK---TGMCLK-------TLPAHSDPVSAVHF 160
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1405
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 1406 FVPKTHYFFTTSKDGRVKQWDADNFERIVTL-----HICSCSLNSPMN 1448
+ ++ + S D +K WD + + + TL ++ C+ N N
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 214 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1112 D 1112
D
Sbjct: 314 D 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 35 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 92
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 151
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 265
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 266 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 325
Query: 646 TIYLGES 652
TI L +S
Sbjct: 326 TIKLWKS 332
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 166 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 219
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFNPNVYLPLQIQV------VTGGG 1271
V F P Y + D +K WD + + T H N + V V+G
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 280 DNLVYIWNLQ 289
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 150/351 (42%), Gaps = 40/351 (11%)
Query: 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105
AR P A T VK + KF +L GH V S+ S + +A+ S D+
Sbjct: 13 ARAQPTPSSSATQSKPTPVKPNY--ALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKL 68
Query: 1106 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFF 1165
+K+WG G K++ H+ ++ V + ++ + S D +K WD + + + TL
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-- 126
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
GH V + + S LI +GS D +V++W + G C K+L AH D V+ V F
Sbjct: 127 ----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTL--HFNPNV----YLPLQIQVVTGGGDKSVKLWQ 1279
++S DG + WD + + + TL NP V + P ++ D ++KLW
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW- 241
Query: 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTT 1337
D S+ L T T K E+ + A S K + D
Sbjct: 242 ---------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 282
Query: 1338 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGLD 1386
V I+ L T + L GH V+S +IA+ + D+T+K+W D
Sbjct: 283 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 92
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 93 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 141
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 142 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 201
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 202 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 98
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 99 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 232 VR 233
V+
Sbjct: 158 VK 159
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 105
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 106 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 165
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 166 TLPAHS----DPVSAVHFN 180
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 52 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 110 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 167
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
AH V V R+ S ++S S D ++W+
Sbjct: 168 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 152
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 212
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Query: 1154 D 1154
D
Sbjct: 333 D 333
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 260
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 261 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 291
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 179
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 180 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 239
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 240 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 299
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 300 HTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 185
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 233 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 332
Query: 1112 D 1112
D
Sbjct: 333 D 333
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 37 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 94
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 95 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 153
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 267
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 268 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 327
Query: 646 TIYLGES 652
TI L +S
Sbjct: 328 TIKLWKS 334
Score = 100 bits (249), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 168 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 221
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFNPNVYLPLQIQV------VTGGG 1271
V F P Y + D +K WD + + T H N + V V+G
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 282 DNLVYIWNLQ 291
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 150/351 (42%), Gaps = 40/351 (11%)
Query: 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105
AR P A T VK + KF +L GH V S+ S + +A+ S D+
Sbjct: 15 ARAQPTPSSSATQSKPTPVKPNY--ALKF--TLAGHTKAVSSVKFSPNGEWLASSSADKL 70
Query: 1106 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFF 1165
+K+WG G K++ H+ ++ V + ++ + S D +K WD + + + TL
Sbjct: 71 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-- 128
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
GH V + + S LI +GS D +V++W + G C K+L AH D V+ V F
Sbjct: 129 ----GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTL--HFNPNV----YLPLQIQVVTGGGDKSVKLWQ 1279
++S DG + WD + + + TL NP V + P ++ D ++KLW
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW- 243
Query: 1280 LELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTT 1337
D S+ L T T K E+ + A S K + D
Sbjct: 244 ---------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL 284
Query: 1338 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGLD 1386
V I+ L T + L GH V+S +IA+ + D+T+K+W D
Sbjct: 285 VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 94
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 95 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 143
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 144 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 203
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 204 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 100
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 101 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 232 VR 233
V+
Sbjct: 160 VK 161
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 100
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 280
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 107
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 108 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 167
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 168 TLPAHS----DPVSAVHFN 182
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 54 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 111
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 112 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 169
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
AH V V R+ S ++S S D ++W+
Sbjct: 170 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 202
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 105 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 154
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 214
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 274
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Query: 1154 D 1154
D
Sbjct: 335 D 335
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 262
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 263 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 293
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 132 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 181
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 182 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 241
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 242 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 301
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 302 HTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 187
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 235 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 274
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 334
Query: 1112 D 1112
D
Sbjct: 335 D 335
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 162 bits (411), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 177/320 (55%), Gaps = 19/320 (5%)
Query: 343 KDVGRTSNLFAP----IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECEN 397
+ +GR S P L GH + K+ P+G+++ASS D+ I IW Y G+ E
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 398 IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVR 457
+SGH + D+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+
Sbjct: 63 --TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516
+ L++ SGS D +V++WD + ++ ++ V++V FN +++ D ++W
Sbjct: 121 QSNLIV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 517 DLRTNSVVQKLRGHSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
D + ++ L + V+ + SP+G YIL+ +DNT+++WD Y G +C+K +G
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTG 235
Query: 576 HQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
H++ EK + +SV+G ++ +GS D VYIW+ T+ I KL GH V HP
Sbjct: 236 HKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 635 EPIIMSAS--SDKTIYLGES 652
E II SA+ +DKTI L +S
Sbjct: 294 ENIIASAALENDKTIKLFKS 313
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 147 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 261 DNLVYIWNLQ 270
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 36/330 (10%)
Query: 1067 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126
F + +L GH V S+ S + +A+ S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186
++ V + ++ + S D +K WD + + + TL GH V + + S L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNL 124
Query: 1187 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246
I +GS D +V++W + G C K+L AH D V+ V F ++S DG + WD +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 1247 ERIVTL--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
+ + TL NP V + P ++ D ++KLW D S+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK 228
Query: 1301 KVLSLLHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP 1358
L T T K E+ + A S K + D V I+ L T + L GH
Sbjct: 229 ----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 1359 VLSLDMSYDSTLIATGS--GDRTVKVWGLD 1386
V+S +IA+ + D+T+K++ D
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLFKSD 314
Score = 74.7 bits (182), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 73
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 74 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 122
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 81 --NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 232 VR 233
V+
Sbjct: 139 VK 140
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 147 TLPAHS----DPVSAVHFN 161
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 33 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 30/273 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1408
D V +W L + + L H D V P
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 35/257 (13%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGS-YALSVCFVPGDRHV 940
GH + +A+SSD+ LVSA + +KIW+ S CL+T+ S Y F P +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
+ G+ D + I D+ G+ L+ +PAHS + +V FN + L +V+ D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV-----HFNRDGSL-----IVSSSYDGL 175
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
++W D + + +L+ V + SP+ K + + L
Sbjct: 176 CRIW----------------DTASGQCLKTLIDDD----NPPVSFVKFSPNGKYILAATL 215
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCH 1117
D T+K++ K + GHK + ++ T I +GS D V +W L +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 1118 KSLLAHEDSVTGVTFVP 1134
+ L H D V P
Sbjct: 276 QKLQGHTDVVISTACHP 292
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 241
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F + +L GH V S+ S + +A+ S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL-----HICSCSLNSPMN 1448
++ V + ++ + S D +K WD + + + TL ++ C+ N N
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 13/181 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 160
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 202 H 202
H
Sbjct: 281 H 281
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 214 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFKS 313
Query: 1112 D 1112
D
Sbjct: 314 D 314
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 66
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 125
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 239
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 240 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 299
Query: 646 TIYLGES 652
TI L +S
Sbjct: 300 TIKLWKS 306
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 140 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 193
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 254 DNLVYIWNLQ 263
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 9 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 68
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 122
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 123 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 183 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 222
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 282
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 283 CHPTENIIASAALENDKTIKLWKSD 307
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 66
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 67 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 115
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 176 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 72
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 73 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 232 VR 233
V+
Sbjct: 132 VK 133
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 72
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 252
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 79
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 80 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 139
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 140 TLPAHS----DPVSAVHFN 154
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 26 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 83
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 84 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 141
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 142 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 77 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 126
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 186
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Query: 1154 D 1154
D
Sbjct: 307 D 307
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 234
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 265
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 104 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 153
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 213
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 214 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 273
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 274 HTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 159
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 206
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 207 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 306
Query: 1112 D 1112
D
Sbjct: 307 D 307
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 106/320 (33%), Positives = 177/320 (55%), Gaps = 19/320 (5%)
Query: 343 KDVGRTSNLFAP----IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECEN 397
+ +GR S P L GH + K+ P+G+++ASS D+ I IW Y G+ E
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 398 IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVR 457
+SGH + D+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+
Sbjct: 63 --TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516
+ L++ SGS D +V++WD + ++ ++ V++V FN +++ D ++W
Sbjct: 121 QSNLIV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 517 DLRTNSVVQKLRGHSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
D + ++ L + V+ + SP+G YIL+ +DNT+++WD Y G +C+K +G
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTG 235
Query: 576 HQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
H++ EK + +SV+G ++ +GS D VYIW+ T+ I KL GH V HP
Sbjct: 236 HKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 635 EPIIMSAS--SDKTIYLGES 652
E II SA+ +DKTI L +S
Sbjct: 294 ENIIASAALENDKTIKLYKS 313
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 147 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 261 DNLVYIWNLQ 270
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 36/330 (10%)
Query: 1067 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126
F + +L GH V S+ S + +A+ S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186
++ V + ++ + S D +K WD + + + TL GH V + + S L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNL 124
Query: 1187 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246
I +GS D +V++W + G C K+L AH D V+ V F ++S DG + WD +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 1247 ERIVTL--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
+ + TL NP V + P ++ D ++KLW D S+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK 228
Query: 1301 KVLSLLHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP 1358
L T T K E+ + A S K + D V I+ L T + L GH
Sbjct: 229 ----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 1359 VLSLDMSYDSTLIATGS--GDRTVKVWGLD 1386
V+S +IA+ + D+T+K++ D
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLYKSD 314
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 73
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 74 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 122
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 81 --NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 232 VR 233
V+
Sbjct: 139 VK 140
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 147 TLPAHS----DPVSAVHFN 161
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 33 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 111/273 (40%), Gaps = 30/273 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1408
D V +W L + + L H D V P
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 108/257 (42%), Gaps = 35/257 (13%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGS-YALSVCFVPGDRHV 940
GH + +A+SSD+ LVSA + +KIW+ S CL+T+ S Y F P +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 941 LVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
+ G+ D + I D+ G+ L+ +PAHS + +V FN + L +V+ D
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV-----HFNRDGSL-----IVSSSYDGL 175
Query: 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1060
++W D + + +L+ V + SP+ K + + L
Sbjct: 176 CRIW----------------DTASGQCLKTLIDDD----NPPVSFVKFSPNGKYILAATL 215
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCH 1117
D T+K++ K + GHK + ++ T I +GS D V +W L +
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 1118 KSLLAHEDSVTGVTFVP 1134
+ L H D V P
Sbjct: 276 QKLQGHTDVVISTACHP 292
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 241
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F + +L GH V S+ S + +A+ S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL-----HICSCSLNSPMN 1448
++ V + ++ + S D +K WD + + + TL ++ C+ N N
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 160
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K++
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 214 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K++
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
Query: 1112 D 1112
D
Sbjct: 314 D 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 129
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 243
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Query: 646 TIYLGES 652
TI L +S
Sbjct: 304 TIKLWKS 310
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 144 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 258 DNLVYIWNLQ 267
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 126
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 226
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 287 CHPTENIIASAALENDKTIKLWKSD 311
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 70
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 71 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 119
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 76
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 77 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 232 VR 233
V+
Sbjct: 136 VK 137
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 144 TLPAHS----DPVSAVHFN 158
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 30 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 130
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 1154 D 1154
D
Sbjct: 311 D 311
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 238
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 157
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 211 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 1112 D 1112
D
Sbjct: 311 D 311
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 129
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 243
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303
Query: 646 TIYLGES 652
TI L +S
Sbjct: 304 TIKLWKS 310
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 144 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 197
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 258 DNLVYIWNLQ 267
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 72
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 126
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 127 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 226
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 287 CHPTENIIASAALENDKTIKLWKSD 311
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 70
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 71 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 119
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 76
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 77 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 232 VR 233
V+
Sbjct: 136 VK 137
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 83
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 84 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 143
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 144 TLPAHS----DPVSAVHFN 158
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 76
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 256
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 30 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 87
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 88 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 145
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 146 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 81 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 130
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 190
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 1154 D 1154
D
Sbjct: 311 D 311
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 238
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 108 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 157
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 217
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 218 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 277
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 278 HTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 163
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 211 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310
Query: 1112 D 1112
D
Sbjct: 311 D 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 87
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 146
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 260
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 261 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 320
Query: 646 TIYLGES 652
TI L +S
Sbjct: 321 TIKLWKS 327
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 161 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 214
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 275 DNLVYIWNLQ 284
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 30 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 89
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 143
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 144 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 204 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 243
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 303
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 304 CHPTENIIASAALENDKTIKLWKSD 328
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 87
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 88 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 136
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 197 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 95 --NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 232 VR 233
V+
Sbjct: 153 VK 154
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 100
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 101 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 160
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 161 TLPAHS----DPVSAVHFN 175
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 93
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 273
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 47 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 104
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 105 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 162
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 163 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 98 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 147
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 207
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Query: 1154 D 1154
D
Sbjct: 328 D 328
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 255
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 256 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 286
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 125 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 174
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 234
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 235 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 294
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 295 HTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 180
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 181 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 228 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 327
Query: 1112 D 1112
D
Sbjct: 328 D 328
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 76
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 135
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 249
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 646 TIYLGES 652
TI L +S
Sbjct: 310 TIKLWKS 316
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 150 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 264 DNLVYIWNLQ 273
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 232
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 293 CHPTENIIASAALENDKTIKLWKSD 317
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 76
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 77 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 125
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 82
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 83 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 232 VR 233
V+
Sbjct: 142 VK 143
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 150 TLPAHS----DPVSAVHFN 164
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 36 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 136
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1154 D 1154
D
Sbjct: 317 D 317
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 244
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 163
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 217 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1112 D 1112
D
Sbjct: 317 D 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 71
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 130
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 244
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 245 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 304
Query: 646 TIYLGES 652
TI L +S
Sbjct: 305 TIKLWKS 311
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 145 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 198
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 259 DNLVYIWNLQ 268
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 14 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 73
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 127
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 128 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 188 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 227
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 287
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 288 CHPTENIIASAALENDKTIKLWKSD 312
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 71
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 72 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 120
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 181 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 77
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 78 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 232 VR 233
V+
Sbjct: 137 VK 138
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 84
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 85 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 144
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 145 TLPAHS----DPVSAVHFN 159
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 77
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 257
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 31 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 88
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 89 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 146
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 147 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 82 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 131
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 191
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Query: 1154 D 1154
D
Sbjct: 312 D 312
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 239
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 270
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 109 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 158
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 218
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 219 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 278
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 279 HTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 164
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 212 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 311
Query: 1112 D 1112
D
Sbjct: 312 D 312
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 76
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 135
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 249
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 646 TIYLGES 652
TI L +S
Sbjct: 310 TIKLWKS 316
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 150 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 264 DNLVYIWNLQ 273
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 232
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 293 CHPTENIIASAALENDKTIKLWKSD 317
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 76
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 77 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 125
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 82
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 83 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 232 VR 233
V+
Sbjct: 142 VK 143
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 150 TLPAHS----DPVSAVHFN 164
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 36 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 136
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1154 D 1154
D
Sbjct: 317 D 317
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 244
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 163
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 217 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1112 D 1112
D
Sbjct: 317 D 317
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 76
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 135
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 249
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 250 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 309
Query: 646 TIYLGES 652
TI L +S
Sbjct: 310 TIKLWKS 316
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 150 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 203
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 264 DNLVYIWNLQ 273
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 19 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 78
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 132
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 133 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 193 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 232
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 292
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 293 CHPTENIIASAALENDKTIKLWKSD 317
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 76
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 77 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 125
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 186 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 82
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 83 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 232 VR 233
V+
Sbjct: 142 VK 143
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 89
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 90 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 149
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 150 TLPAHS----DPVSAVHFN 164
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 82
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 262
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 36 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 93
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 94 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 151
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 152 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 87 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 136
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 196
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1154 D 1154
D
Sbjct: 317 D 317
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 244
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 275
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 114 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 163
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 223
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 224 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 283
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 284 HTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 169
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 217 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 316
Query: 1112 D 1112
D
Sbjct: 317 D 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 69
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 128
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 242
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 243 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 302
Query: 646 TIYLGES 652
TI L +S
Sbjct: 303 TIKLWKS 309
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 143 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 196
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 257 DNLVYIWNLQ 266
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 12 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 125
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 126 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 186 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 225
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 285
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 286 CHPTENIIASAALENDKTIKLWKSD 310
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 69
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 70 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 118
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 179 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 75
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 76 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 232 VR 233
V+
Sbjct: 135 VK 136
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 82
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 83 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 142
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 143 TLPAHS----DPVSAVHFN 157
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 75
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 255
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 29 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 86
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 87 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 144
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 145 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 80 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 129
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 189
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Query: 1154 D 1154
D
Sbjct: 310 D 310
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 237
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 238 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 268
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 107 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 156
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 216
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 217 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 276
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 277 HTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 162
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 209
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 210 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 309
Query: 1112 D 1112
D
Sbjct: 310 D 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 75
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 134
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DNT+++WD Y G +C+K +GH++ EK +
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 248
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 249 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 308
Query: 646 TIYLGES 652
TI L +S
Sbjct: 309 TIKLWKS 315
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 149 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 202
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 263 DNLVYIWNLQ 272
Score = 91.3 bits (225), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 141/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 18 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 77
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 131
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 132 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D ++KLW D S+
Sbjct: 192 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK----C 231
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 291
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 292 CHPTENIIASAALENDKTIKLWKSD 316
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 75
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 76 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 124
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 185 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 81
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 82 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 232 VR 233
V+
Sbjct: 141 VK 142
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 88
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 89 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 148
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 149 TLPAHS----DPVSAVHFN 163
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 81
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 261
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 35 KFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 92
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 93 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 150
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 151 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 86 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 135
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 195
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Query: 1154 D 1154
D
Sbjct: 316 D 316
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 243
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 274
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 113 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 162
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 222
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 223 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 282
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 283 HTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 168
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 216 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 315
Query: 1112 D 1112
D
Sbjct: 316 D 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 177/320 (55%), Gaps = 19/320 (5%)
Query: 343 KDVGRTSNLFAP----IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECEN 397
+ +GR S P L GH + K+ P+G+++A+S D+ I IW Y G+ E
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 398 IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVR 457
+SGH + D+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+
Sbjct: 63 --TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516
+ L++ SGS D +V++WD + ++ ++ V++V FN +++ D ++W
Sbjct: 121 QSNLIV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 517 DLRTNSVVQKLRGHSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
D + ++ L + V+ + SP+G YIL+ +DNT+++WD Y G +C+K +G
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD---YSKG-KCLKTYTG 235
Query: 576 HQHNFEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPK 634
H++ EK + +SV+G ++ +GS D VYIW+ T+ I KL GH V HP
Sbjct: 236 HKN--EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 635 EPIIMSAS--SDKTIYLGES 652
E II SA+ +DKTI L +S
Sbjct: 294 ENIIASAALENDKTIKLWKS 313
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 117/250 (46%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
TL H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 147 TLP------AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFN------PNVYLPLQIQVVTGGG 1271
V F P Y + D +K WD + + T H N N + +V+G
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 261 DNLVYIWNLQ 270
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 141/330 (42%), Gaps = 36/330 (10%)
Query: 1067 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126
F + +L GH V S+ S + +A S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186
++ V + ++ + S D +K WD + + + TL GH V + + S L
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNL 124
Query: 1187 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246
I +GS D +V++W + G C K+L AH D V+ V F ++S DG + WD +
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 1247 ERIVTL--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
+ + TL NP V + P ++ D ++KLW D S+
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW----------------DYSKGK 228
Query: 1301 KVLSLLHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP 1358
L T T K E+ + A S K + D V I+ L T + L GH
Sbjct: 229 ----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV 284
Query: 1359 VLSLDMSYDSTLIATGS--GDRTVKVWGLD 1386
V+S +IA+ + D+T+K+W D
Sbjct: 285 VISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + +S D +K W A FE+ ++ H L I
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH-------KLGISD 73
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 74 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 122
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T K +L H PV ++ + D +LI + S D ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA S D I +W +SGHK I+D+ + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 81 --NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 232 VR 233
V+
Sbjct: 139 VK 140
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD + +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK 146
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 147 TLPAHS----DPVSAVHFN 161
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 4/152 (2%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + LA + + +K + T +GHK I+ + + + L + S D
Sbjct: 33 KFSPNGE--WLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
+ +WDV + L L GH + F P + +VS + D V+IWD TG C KT+
Sbjct: 91 TLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL 148
Query: 200 AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
AH V V R+ S ++S S D ++W+
Sbjct: 149 PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 119/295 (40%), Gaps = 32/295 (10%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
+L GH V S+ S + +A S D+ +K+WG G K++ H+ ++ V +
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 79
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQL 1280
++ + S D +K WD + + + TL + N + P +V+G D+SV++W +
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 1281 ELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL-----EEQVL 1318
+ + + VS H ++ + LK V
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST---LIATGS 1375
+ SP+ K + + LD T+K++ K + GHK + ++ T I +GS
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 259
Query: 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428
D V +W L + + L H D V P + + + D +K W +D
Sbjct: 260 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 119/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L ++ A + +KIW +TI +S D ++L
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 133
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD T+K++ K + GHK + ++ T
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1154 D 1154
D
Sbjct: 314 D 314
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-- 241
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ K L LP V +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKT---------LPAHSDPVSAVHF 160
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK 220
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQG 280
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 1341 FFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400
F + +L GH V S+ S + +A S D+ +K+WG G K++ H+
Sbjct: 11 FVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL-----HICSCSLNSPMN 1448
++ V + ++ + S D +K WD + + + TL ++ C+ N N
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 94/241 (39%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D ++KLW D S+ L T T K E+ + A S K
Sbjct: 214 TLDNTLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1112 D 1112
D
Sbjct: 314 D 314
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 173/307 (56%), Gaps = 15/307 (4%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
+A + L GH + K+ P+G+++ASS D+ I IW Y G+ E +SGH + D
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--TISGHKLGISD 73
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ +S+D + + S D+TL +WD+ G+ +K +KGHS +V C+ + L++ SGS D
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV-SGSFDE 132
Query: 471 TVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+V++WD + ++ ++ V++V FN +++ D ++WD + ++ L
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 530 HSDT-VTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
+ V+ + SP+G YIL+ +DN +++WD Y G +C+K +GH++ EK +
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWD---YSKG-KCLKTYTGHKN--EKYCIFAN 246
Query: 589 WSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDK 645
+SV+G ++ +GS D VYIW+ T+ I KL GH V HP E II SA+ +DK
Sbjct: 247 FSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 306
Query: 646 TIYLGES 652
TI L +S
Sbjct: 307 TIKLWKS 313
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 15/250 (6%)
Query: 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1100
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1101 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD------VK 140
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTG 1219
T +L H PV ++ + D +LI + S D ++W G C K+L+ ++ V+
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSF 200
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN----VYLPLQIQ----VVTGGG 1271
V F P Y + D +K WD + + T + N ++ + +V+G
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 1272 DKSVKLWQLE 1281
D V +W L+
Sbjct: 261 DNMVYIWNLQ 270
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 36/325 (11%)
Query: 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191
+ ++ + S D +K WD + + + TL GH V + + S LI +GS
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK------GHSNYVFCCNFNPQSNLIVSGS 129
Query: 1192 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1251
D +V++W + G C K+L AH D V+ V F ++S DG + WD + + + T
Sbjct: 130 FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 1252 L--HFNPNV----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305
L NP V + P ++ D +KLW D S+
Sbjct: 190 LIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW----------------DYSKGK----C 229
Query: 1306 LHTRT-LKLEEQVLCARVS-PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
L T T K E+ + A S K + D V I+ L T + L GH V+S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTA 289
Query: 1364 MSYDSTLIATGS--GDRTVKVWGLD 1386
+IA+ + D+T+K+W D
Sbjct: 290 CHPTENIIASAALENDKTIKLWKSD 314
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
T GH A++ +++ P G LA+ S D I +W +SGHK I+D+ + S
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD- 79
Query: 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ +VS++ D +KIWD +G C KT+ H V+ + + ++SGS D +++W+
Sbjct: 80 -SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 232 VR 233
V+
Sbjct: 139 VK 140
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 21/221 (9%)
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFNPNVYLPLQIQV 1266
+L H +V+ V F P + ++S D +K W A FE+ ++ H L I
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH-------KLGISD 73
Query: 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326
V D ++ LVS + + + DVS S K L L + V C +P S
Sbjct: 74 VAWSSDSNL------LVSASDDKTLKIWDVS-SGKCLKTLKGHS----NYVFCCNFNPQS 122
Query: 1327 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
L+ D +V+I+ + T +L H PV ++ + D +LI + S D ++W
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 1387 YGDCHKSLLAHED-SVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
G C K+L+ ++ V+ V F P Y + D +K WD
Sbjct: 183 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 4/139 (2%)
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
+ V + SP+ + LA S D +KI+ KF ++ GHKL + + S DS L+ +
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA 86
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D+T+K+W + G C K+L H + V F P+++ + S D V+ WD +
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK 146
Query: 1435 TLHICSCSLNSPMNSVHLN 1453
TL S P+++VH N
Sbjct: 147 TLPAHS----DPVSAVHFN 161
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 4/172 (2%)
Query: 62 PGEKHEALL--LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA 119
P + + AL+ L G V + + + LA + + +K + T +GHK
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 120 ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSS 179
I+ + + + L + S D + +WDV + L L GH + F P + +VS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF--NPQSNLIVSG 128
Query: 180 AKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ D V+IWD TG C KT+ AH V V R+ S ++S S D ++W+
Sbjct: 129 SFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
S DS LL + D T+KI+ + + K +L GH V + + S LI +GS D +V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 1383 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436
W + G C K+L AH D V+ V F ++S DG + WD + + + TL
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 39/301 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL 941
GH V ++ FS + L S+ A + +KIW +TI +S D ++L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 942 VGTKDGRLL-IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000
V D + L I D+ +G+ L+ + HS ++ FNP L +V+G D+S
Sbjct: 84 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC-----NFNPQSNL-----IVSGSFDES 133
Query: 1001 VKLWQLELVSVNREADEETKDVSRSH-----------------KVLSLLHTRTLKL---- 1039
V++W ++ + + VS H ++ + LK
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD 193
Query: 1040 -EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--- 1095
V + SP+ K + + LD +K++ K + GHK + ++ T
Sbjct: 194 DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDA 1153
I +GS D V +W L + + L H D V P + + + D +K W +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1154 D 1154
D
Sbjct: 314 D 314
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/334 (21%), Positives = 132/334 (39%), Gaps = 51/334 (15%)
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223
+L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS 77
Query: 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLW 1278
++ + S D +K WD + + + TL + N + P +V+G D+SV++W
Sbjct: 78 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTV 1338
++ + + VS H + D L+ S D
Sbjct: 138 DVKTGMCLKTLPAHSDPVSAVH---------------------FNRDGSLIVSSSYDGLC 176
Query: 1339 KIFFLDTFKFFISLYGHKLPVLS-LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1397
+I+ + + +L P +S + S + I + D +K+W G C K+ H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 1398 ED---------SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMN 1448
++ SVTG ++ + S+D V W+ E + L +
Sbjct: 237 KNEKYCIFANFSVTGGKWI------VSGSEDNMVYIWNLQTKEIVQKLQ-------GHTD 283
Query: 1449 SVHLNSCPALEASNDIAELLMECLATMKEYEVEC 1482
V +C E N IA +E T+K ++ +C
Sbjct: 284 VVISTACHPTE--NIIASAALENDKTIKLWKSDC 315
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 82/211 (38%), Gaps = 48/211 (22%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
+ G K + ++ + DS+ L A + +LK + + + + T GH + + ++P +
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS--------------------- 169
+ +GS D + +WDV L L H ++ + F
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 170 --------------------QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
P +++++ D +K+WD G C KT H E +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY-- 241
Query: 210 CVMREDS-----YLISGSNDAELKVWNVRDR 235
C+ S +++SGS D + +WN++ +
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTK 272
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 15/211 (7%)
Query: 25 NVVFVTLKNQEGRFLATGA-SEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
N VF N + + +G+ E V IWD++ + L LP V +
Sbjct: 111 NYVFCCNFNPQSNLIVSGSFDESVRIWDVK---TGMCLK-------TLPAHSDPVSAVHF 160
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIV 142
N D S + + +G + + + + T + ++ +++ P G + + D D+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLK 220
Query: 143 LWDVVAECGLHRLSGHKGVITDI-RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
LWD L +GHK I S G ++VS ++D V IW+ T + + +
Sbjct: 221 LWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQG 280
Query: 202 HLTEVWGVCVMREDSYLISGS--NDAELKVW 230
H V ++ + S + ND +K+W
Sbjct: 281 HTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1405
+ +L GH V S+ S + +A+ S D+ +K+WG G K++ H+ ++ V
Sbjct: 16 YALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 1406 FVPKTHYFFTTSKDGRVKQWDADNFERIVTL-----HICSCSLNSPMN 1448
+ ++ + S D +K WD + + + TL ++ C+ N N
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 93/241 (38%), Gaps = 43/241 (17%)
Query: 882 QGHHSEVRALAFS-SDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHV 940
+GH + V F+ NL + + V+IW+ + CL+T+ S +S D +
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSL 166
Query: 941 LVGTK-DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV----YLPLQIQVVTG 995
+V + DG I D +G+ L+ L D NP V + P ++
Sbjct: 167 IVSSSYDGLCRIWDTASGQCLK-------------TLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT-LKLEEQVLCARVS-PDSK 1053
D +KLW D S+ L T T K E+ + A S K
Sbjct: 214 TLDNDLKLW----------------DYSKGK----CLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 1054 LLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS--GDRTVKVWGL 1111
+ D V I+ L T + L GH V+S +IA+ + D+T+K+W
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 313
Query: 1112 D 1112
D
Sbjct: 314 D 314
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/279 (29%), Positives = 130/279 (46%), Gaps = 43/279 (15%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTD 416
L+GH + + G+ +AS D I +W G EC I M GH V + +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFEC--IRTMHGHDHNVSSVSIMPN 203
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW- 475
G HI + S D+T+ +W+++ G +K GH +V P + G L IAS S+D TV+VW
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL-IASCSNDQTVRVWV 262
Query: 476 -----------DPRKKNQAVSMNNTYQVTSVAFNDTAEC---------VLTGGIDNDIKM 515
+ R + +S +S++ +E +L+G D IKM
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
WD+ T + L GH + V G+ G +ILS A D T+R+WD + +RC+K ++
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNA 378
Query: 576 HQH-----NFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
H+H +F K + YV GS D+ V +W+
Sbjct: 379 HEHFVTSLDFHK---------TAPYVVTGSVDQTVKVWE 408
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 140/315 (44%), Gaps = 31/315 (9%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH + +HP + S+ D I +W Y + + GHT +V D+ F G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ +CS D T+ +WD + + I+ M GH V+S + G ++ S S D T+K+W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEV 221
Query: 478 RKKNQAVSMNNTYQ-VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTG 536
+ + + V V N + + D +++W + T +LR H V
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 281
Query: 537 LSLSPDGSY--------------------ILSNAMDNTVRIWDIRPYVPGERCVKVMSGH 576
+S +P+ SY +LS + D T+++WD+ + C+ + GH
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGH 337
Query: 577 QHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP 636
N+ + +L + G ++ + + DK + +WD +R L H V + FH P
Sbjct: 338 D-NWVRGVL---FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 393
Query: 637 IIMSASSDKTIYLGE 651
+++ S D+T+ + E
Sbjct: 394 YVVTGSVDQTVKVWE 408
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 128/270 (47%), Gaps = 32/270 (11%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459
+SGH V + F + + S D T+ VWD E G + +KGH+ V G
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 460 QLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
+LL AS S D T+K+WD + +M+ + + V+SV+ + +++ D IKMW++
Sbjct: 163 KLL-ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 519 RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578
+T V+ GH + V + + DG+ I S + D TVR+W V + C + H+H
Sbjct: 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW----VVATKECKAELREHRH 277
Query: 579 NFEKNLLRC-AW-------SVS-------------GLYVTAGSADKCVYIWDTTTRRIAY 617
++ C +W S+S G ++ +GS DK + +WD +T
Sbjct: 278 -----VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332
Query: 618 KLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
L GH+ V V FH I+S + DKT+
Sbjct: 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 142/323 (43%), Gaps = 44/323 (13%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T+K++ +T F +L GH V + + L+A+ S D T+K+W +C +++
Sbjct: 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180
H+ +V+ V+ +P + + S+D +K W+ + T + + GH+ V +
Sbjct: 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE------VQTGYCVKTFTGHREWVRMVRP 242
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
+ D TLIA+ S D+TV+VW + +C L H V +++ P++ Y + G +
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
P +L ++G DK++K+W DVS
Sbjct: 303 KSG-----------KPGPFL------LSGSRDKTIKMW----------------DVSTGM 329
Query: 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL 1360
+++L + + V K + D T++++ + +L H+ V
Sbjct: 330 CLMTL-----VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVT 384
Query: 1361 SLDMSYDSTLIATGSGDRTVKVW 1383
SLD + + TGS D+TVKVW
Sbjct: 385 SLDFHKTAPYVVTGSVDQTVKVW 407
Score = 97.4 bits (241), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 144/350 (41%), Gaps = 44/350 (12%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH+ PV + +++ + S D T+KVW + GD ++L H DSV ++F
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+ S D +K WD FE I T+H GH V S+ + + I + S D+T+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH------GHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256
K+W + G C K+ H + V V + S D V+ W E L +
Sbjct: 217 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 1257 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1316
+V ++ ++ + S S++ ETK +
Sbjct: 277 HV-----VECISWAPESSYS-------SISEATGSETKKSGK------------------ 306
Query: 1317 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1376
P LL+ S D T+K++ + T ++L GH V + I + +
Sbjct: 307 -------PGPFLLSGS-RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 1377 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
D+T++VW C K+L AHE VT + F Y T S D VK W+
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 46/296 (15%)
Query: 1167 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1226
+L GH+ PV + +++ + S D T+KVW + GD ++L H DSV ++F
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 1227 HYFFTTSKDGRVKQWDADNFERIVTLH-FNPNV----YLPLQIQVVTGGGDKSVKLWQLE 1281
+ S D +K WD FE I T+H + NV +P +V+ DK++K+W+
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE-- 220
Query: 1282 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF 1341
V + V + R E V R + D L+A D TV+++
Sbjct: 221 --------------VQTGYCVKTFTGHR-----EWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 1342 FLDTFKFFISLYGHKLPVLSLDMSYDST--------------------LIATGSGDRTVK 1381
+ T + L H+ V + + +S+ + +GS D+T+K
Sbjct: 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437
+W + G C +L+ H++ V GV F + + + D ++ WD N + TL+
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 140/337 (41%), Gaps = 43/337 (12%)
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
LSGH+ +T + F P +VS+++D +K+WD +TGD +T+ H V +
Sbjct: 104 LSGHRSPVTRVIF--HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 215 DSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDE-----PDLTVSKIEV 269
L S S D +K+W+ + I T D D T+ EV
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 270 QIINELKNLSTGKKKWLQVFR-------LALCISSITLNIDDFAFGIDTTQELRTRSMKR 322
Q +K TG ++W+++ R +A C + T+ + A + ELR R
Sbjct: 222 QTGYCVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELREH---R 276
Query: 323 KNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY 382
E + E +Y + E G E K G ++ S
Sbjct: 277 HVVECISWAPESSYS------------------SISEATGSET--KKSGKPGPFLLSGSR 316
Query: 383 DRQIFIWSV-YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK 441
D+ I +W V G C + + GH V + F + G I +C+ D+TL VWD + + +K
Sbjct: 317 DKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 442 KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478
+ H FV S D + + +GS D TVKVW+ R
Sbjct: 375 TLNAHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWECR 410
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 25/232 (10%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMD 410
F I + GH + P+G +I S+ D+ I +W V G C + +GH V
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRM 239
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN--SCDPV------------ 456
++ + DG I +CS DQT+ VW + + +++ H V S P
Sbjct: 240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS 299
Query: 457 ------RRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI 509
+ G L+ SGS D T+K+WD +++ + V V F+ + +L+
Sbjct: 300 ETKKSGKPGPFLL-SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
D +++WD + ++ L H VT L Y+++ ++D TV++W+ R
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
K W PR + + VT V F+ +++ D IK+WD T + L+GH+D
Sbjct: 92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 151
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+V +S G + S + D T+++WD + G C++ M GH HN SVS
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQ----GFECIRTMHGHDHNVS--------SVS 199
Query: 593 ----GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
G ++ + S DK + +W+ T GH V V+ + +I S S+D+T+
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 135/320 (42%), Gaps = 61/320 (19%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALS-VCFVPGDRH 939
+GH V+ ++F L S A +K+W+ C+RT+ + +S V +P H
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 940 VLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK 999
++ ++D + + ++ G ++ H + W + P+Q + + D+
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDG--------TLIASCSNDQ 256
Query: 1000 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059
+V++W + A +E K R H+ + V C +P+S ++S
Sbjct: 257 TVRVWVV--------ATKECKAELREHRHV-------------VECISWAPESSYSSISE 295
Query: 1060 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1119
+ +T K G P L +GS D+T+K+W + G C +
Sbjct: 296 ATGS------ETKK-----SGKPGPFL-----------LSGSRDKTIKMWDVSTGMCLMT 333
Query: 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179
L+ H++ V GV F + + + D ++ WD N + TL+ H+ V SLD
Sbjct: 334 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN------AHEHFVTSLD 387
Query: 1180 MSYDSTLIATGSGDRTVKVW 1199
+ + TGS D+TVKVW
Sbjct: 388 FHKTAPYVVTGSVDQTVKVW 407
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 2/166 (1%)
Query: 67 EALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYD 126
E L G + V ++ + S + A + ++K + +T D T GH ++ I +D
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 159
Query: 127 PLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
G LA+ S D I LWD + + GH ++ + M H +VS+++D +K
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH--IVSASRDKTIK 217
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
+W+ TG C KT H V V ++ + + S SND ++VW V
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 263
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 103/228 (45%), Gaps = 31/228 (13%)
Query: 33 NQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLA 91
+ G+ LA+ +++ I +WD + E + G H + PN D +
Sbjct: 159 DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--------SSVSIMPNGD--HIV 208
Query: 92 VAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151
A + ++K + + T + TFTGH+ + +++ + G +A+ S D + +W V +
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 152 LHRLSGHKGVI-------------------TDIRFMSQPGHHFVVSSAKDTFVKIWDADT 192
L H+ V+ ++ + +PG F++S ++D +K+WD T
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGP-FLLSGSRDKTIKMWDVST 327
Query: 193 GDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
G C T+ H V GV +++S ++D L+VW+ +++ + T
Sbjct: 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 375
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 22/181 (12%)
Query: 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPL---- 128
G + V + PN D + +A + +++ + + T + + H+ + I + P
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291
Query: 129 ----------------GHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPG 172
G L +GS+D I +WDV L L GH + + F S G
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--G 349
Query: 173 HHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
F++S A D +++WD C KT+ AH V + + Y+++GS D +KVW
Sbjct: 350 GKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409
Query: 233 R 233
R
Sbjct: 410 R 410
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 12/158 (7%)
Query: 497 FNDTAECVLTGGI---DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN 553
N+ E +GG D K W R L GH VT + P S ++S + D
Sbjct: 72 LNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDA 130
Query: 554 TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613
T+++WD Y G+ + + GH + + ++ SG + + SAD + +WD
Sbjct: 131 TIKVWD---YETGD-FERTLKGHTDSVQD----ISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 614 RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651
+ GH+ +V+ V P I+SAS DKTI + E
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 121/265 (45%), Gaps = 30/265 (11%)
Query: 1049 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1108
SPD K LA D ++I+ ++ K + L GH+ + SLD + +GSGDRTV++
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 1109 WGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADN---FERIVTLHF 1164
W L G C + L+ ED VT V P Y S D V+ WD++ ER+ + +
Sbjct: 192 WDLRTGQCSLT-LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE 250
Query: 1165 FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL------------DYGDCHKSLLA 1212
S GHK V S+ + D + +GS DR+VK+W L + G C + +
Sbjct: 251 --SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG 308
Query: 1213 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ------- 1265
H+D V V Y + SKD V WD + ++ L + N + + +
Sbjct: 309 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368
Query: 1266 ----VVTGGGDKSVKLWQLELVSVN 1286
TG GD ++W+ + ++ N
Sbjct: 369 EYNVFATGSGDCKARIWKYKKIAPN 393
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 147/322 (45%), Gaps = 43/322 (13%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG---------------ECENIGVMSGHT 405
H + C K+ DG+Y+A+ G ++ ++ V + EN+ S +
Sbjct: 63 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 406 G--AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463
+ + FS DG + T + D+ + +WD+E + + ++GH + S D G L+
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN-DTAECVLTGGIDNDIKMWDLRTNS 522
SGS D TV++WD R +++++ VT+VA + + + G +D +++WD T
Sbjct: 182 -SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Query: 523 VVQKL-------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR-------PYVPGER 568
+V++L GH D+V + + DG ++S ++D +V++W+++ P
Sbjct: 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 300
Query: 569 CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSV-- 626
+V +F +L A + + Y+ +GS D+ V WD + L GH SV
Sbjct: 301 TCEVTYIGHKDF---VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 357
Query: 627 ----NDVQFHPKEPIIMSASSD 644
N P+ + + S D
Sbjct: 358 VAVANGSSLGPEYNVFATGSGD 379
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 148/362 (40%), Gaps = 85/362 (23%)
Query: 884 HHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS----------------- 926
H S V + FS+D L + C +++ S + + S
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 927 --YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV 984
Y SVCF P + + G +D + I DI +I+ + H Q+++S+
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLD---------- 172
Query: 985 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044
Y P ++V+G GD++V++W L + TL +E+ V
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTGQC----------------------SLTLSIEDGVT 210
Query: 1045 CARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFI--------SLYGHKLPVLSLDMSYDST 1095
VSP D K +A LD V+++ +T F + S GHK V S+ + D
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269
Query: 1096 LIATGSGDRTVKVWGL------------DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1143
+ +GS DR+VK+W L + G C + + H+D V V Y + S
Sbjct: 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 329
Query: 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTL------IATGSGDRTVK 1197
KD V WD + ++ L GH+ V+S+ ++ S+L ATGSGD +
Sbjct: 330 KDRGVLFWDKKSGNPLLMLQ------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383
Query: 1198 VW 1199
+W
Sbjct: 384 IW 385
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 111/254 (43%), Gaps = 42/254 (16%)
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463
HT V +KFS DG ++ T ++T V+ + G L+
Sbjct: 63 HTSVVCCVKFSNDGEYLAT-GCNKTTQVYRVSDGS-----------------------LV 98
Query: 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV 523
A SDD DP N + S ++ + SV F+ + + TG D I++WD+ +
Sbjct: 99 ARLSDDSAANK-DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 157
Query: 524 VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583
V L+GH + L P G ++S + D TVRIWD+R +C +S E
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT----GQCSLTLS-----IEDG 208
Query: 584 LLRCAWSVS-GLYVTAGSADKCVYIWDTTTRRIAYKL-------PGHNGSVNDVQFHPKE 635
+ A S G Y+ AGS D+ V +WD+ T + +L GH SV V F
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 268
Query: 636 PIIMSASSDKTIYL 649
++S S D+++ L
Sbjct: 269 QSVVSGSLDRSVKL 282
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 32/239 (13%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECE-NIGVMSGHTGAVMDLK 412
+M+L+GH +I+ Y P G + S DR + IW + G+C + + G T +
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS-- 215
Query: 413 FSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK-------GHSTFVNSCDPVRRGQLLIAS 465
DG +I S D+ + VWD E G ++++ GH V S R GQ ++ S
Sbjct: 216 -PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-S 273
Query: 466 GSDDCTVKVWDPR----KKNQAVSMNNTYQVT---------SVAFNDTAECVLTGGIDND 512
GS D +VK+W+ + K + + T +VT SVA E +L+G D
Sbjct: 274 GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333
Query: 513 IKMWDLRTNSVVQKLRGHSDTV------TGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565
+ WD ++ + + L+GH ++V G SL P+ + + + D RIW + P
Sbjct: 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIAP 392
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 49/247 (19%)
Query: 1217 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNV-----YLPLQIQVVTGGG 1271
+ V F P + T ++D ++ WD +N + ++ L + Y P ++V+G G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 1272 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLA 1330
D++V++W L + TL +E+ V VSP D K +A
Sbjct: 186 DRTVRIWDLRTGQC----------------------SLTLSIEDGVTTVAVSPGDGKYIA 223
Query: 1331 VSLLDTTVKIFFLDTFKFFI--------SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1382
LD V+++ +T F + S GHK V S+ + D + +GS DR+VK+
Sbjct: 224 AGSLDRAVRVWDSET-GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282
Query: 1383 WGL------------DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430
W L + G C + + H+D V V Y + SKD V WD +
Sbjct: 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 342
Query: 1431 ERIVTLH 1437
++ L
Sbjct: 343 NPLLMLQ 349
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 67/315 (21%)
Query: 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1142
L + S+ S D +ATG+ DR +++W ++ L HE + + + P +
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 1143 SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY-DSTLIATGSGDRTVKVWGL 1201
S D V+ WD + +TL + V ++ +S D IA GS DR V+VW
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSI-------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 236
Query: 1202 DYG-------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254
+ G ++S H+DSV V F ++DG+
Sbjct: 237 ETGFLVERLDSENESGTGHKDSVYSVVF----------TRDGQ----------------- 269
Query: 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
VV+G D+SVKLW L+ + N ++D +T + S + +V + H +
Sbjct: 270 ----------SVVSGSLDRSVKLWNLQ--NANNKSDSKTPN-SGTCEVTYIGH------K 310
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL---- 1370
+ VL + + + + D V + + + L GH+ V+S+ ++ S+L
Sbjct: 311 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 370
Query: 1371 --IATGSGDRTVKVW 1383
ATGSGD ++W
Sbjct: 371 NVFATGSGDCKARIW 385
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 31/224 (13%)
Query: 33 NQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEK-------------HEVC 79
+ +G +LATG ++ ++ R+++ +L+ A E VC
Sbjct: 73 SNDGEYLATGCNKTTQVY--RVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 130
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
SP D LA + ++ + ++ ++ GH+ I + Y P G +L +GS D
Sbjct: 131 -FSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 140 DIVLWDV-VAECGLHRLSGHKGVITDIRFMSQPGH-HFVVSSAKDTFVKIWDADTGDCFK 197
+ +WD+ +C L LS GV T PG ++ + + D V++WD++TG +
Sbjct: 188 TVRIWDLRTGQCSL-TLSIEDGVTT---VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 198 TM-------AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+ H V+ V R+ ++SGS D +K+WN+++
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 110/277 (39%), Gaps = 39/277 (14%)
Query: 1173 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232
L + S+ S D +ATG+ DR +++W ++ L HE + + + P +
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 1233 SKDGRVKQWDADNFERIVTLHFNPNVYL----PLQIQVVTGGG-DKSVKLWQLEL-VSVN 1286
S D V+ WD + +TL V P + + G D++V++W E V
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 243
Query: 1287 READEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL--- 1343
R E V S++ TR D + + LD +VK++ L
Sbjct: 244 RLDSENESGTGHKDSVYSVVFTR---------------DGQSVVSGSLDRSVKLWNLQNA 288
Query: 1344 ---------DTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
++ ++ GHK VLS+ + + I +GS DR V W G+ L
Sbjct: 289 NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 348
Query: 1395 LAHEDSV------TGVTFVPKTHYFFTTSKDGRVKQW 1425
H +SV G + P+ + F T S D + + W
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 15 SFNIIASPNCNVVFVTL-KNQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLP 72
+ N +SP+ ++ ++ + +G+FLATGA + +I IWD+ + ++L
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE----------NRKIVMILQ 162
Query: 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRL 132
G + ++ L +L + +++ + L T T + TV G +
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 222
Query: 133 ATGSKDTDIVLWDVVAECGLHRL-------SGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185
A GS D + +WD + RL +GHK + + F VVS + D V
Sbjct: 223 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--GQSVVSGSLDRSV 280
Query: 186 KIWD------------ADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233
K+W+ ++G C T H V V + D Y++SGS D + W+ +
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 340
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSL---SCLRTIDTGS----------YA 928
GH V ++ F+ D ++VS + VK+WN + S +T ++G+ +
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 929 LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPL 988
LSV D ++L G+KD +L D +G L + H + SVA+ N + P
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVA----NGSSLGPE 369
Query: 989 QIQVVTGGGDKSVKLWQLELVSVN 1012
TG GD ++W+ + ++ N
Sbjct: 370 YNVFATGSGDCKARIWKYKKIAPN 393
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 116 HKSAITVIQYDPLGHRLATGSKDTDIVLW------------DVVAECGLHRLSGHKGVIT 163
H S + +++ G LATG T V D A L+ +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 122
Query: 164 DIRFMS---QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLIS 220
D+ S P F+ + A+D ++IWD + + H +++ + L+S
Sbjct: 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 182
Query: 221 GSNDAELKVWNVR 233
GS D +++W++R
Sbjct: 183 GSGDRTVRIWDLR 195
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 71/180 (39%), Gaps = 20/180 (11%)
Query: 26 VVFVTLKNQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPN 84
V V + +G+++A G+ + + +WD +E L+ E G K V +
Sbjct: 209 VTTVAVSPGDGKYIAAGSLDRAVRVWD---SETGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 85 HDSSQLAVAYTNGSLKTFSLDTTDVIS------------TFTGHKSAITVIQYDPLGHRL 132
D + + S+K ++L + S T+ GHK + + +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 133 ATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS----QPGHHFVVSSAKDTFVKIW 188
+GSKD ++ WD + L L GH+ + + + P ++ + + D +IW
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 1357 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1416
L + S+ S D +ATG+ DR +++W ++ L HE + + + P +
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 1417 SKDGRVKQWDADNFERIVTLHI 1438
S D V+ WD + +TL I
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSI 205
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 144/325 (44%), Gaps = 26/325 (8%)
Query: 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST 415
+++ H ++ + + DGQ IAS G D+ + ++ E + + H V+ FST
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG-EKLLEIKAHEDEVLCCAFST 673
Query: 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKV 474
D I TCS D+ + +W+ G+ + HS VN C LL+A+GS DC +K+
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 475 WDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL------RTNSVVQKL 527
WD +K +M +T V F+ + + + D +K+WD ++ +V Q
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 528 RGHSD-------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPY-VPGERCVKVMSGHQHN 579
D V S S DG+ I+ A N + ++DI + GE + +GH
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMV-AAKNKIFLFDIHTSGLLGE----IHTGHHST 848
Query: 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIM 639
+ C +S + CV +W+T +R GH V+ V F P +
Sbjct: 849 IQ----YCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Query: 640 SASSDKTIYLGESPLHCDKAGSILR 664
++S D+TI L E+ C + +L+
Sbjct: 905 TSSDDQTIRLWETKKVCKNSAVMLK 929
Score = 101 bits (251), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 176/421 (41%), Gaps = 40/421 (9%)
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS--TLI 1097
E++VLC S D + +A +D VKI+ T + + H V + S L+
Sbjct: 663 EDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLL 722
Query: 1098 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD---AD 1154
ATGS D +K+W L+ +C ++ H +SV F P + S DG +K WD A+
Sbjct: 723 ATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 1155 NFERIVTLHFFISL----YGHKLPVLSLDMSYDSTLIATGSGDRT----VKVWGLDYGDC 1206
+ I FF++L ++ V S D I + ++ + GL G+
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL-LGEI 841
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
H H ++ F P+ H V+ W+ D+ ++ + + ++ P
Sbjct: 842 HT---GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSP 898
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREA--DEETKDVSRSHKVLSLL--HTRTLKL---- 1313
+T D++++LW+ + V N +E V + ++V+ L H R L+L
Sbjct: 899 DGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGR 958
Query: 1314 --------EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS 1365
E QV C +SP + +A + ++I L + F S + HK V + +
Sbjct: 959 TGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFT 1018
Query: 1366 YDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425
D + + S D ++VW C L H+++V + K + S DG VK W
Sbjct: 1019 ADEKTLISSSDDAEIQVWNWQLDKC-IFLRGHQETVKDFRLL-KNSRLLSWSFDGTVKVW 1076
Query: 1426 D 1426
+
Sbjct: 1077 N 1077
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 133/586 (22%), Positives = 226/586 (38%), Gaps = 94/586 (16%)
Query: 879 IHAQGHHSEVRALAFSSDNLALVSACA--SQVKIWNRPSLSCLRTIDTGSYALSVC-FVP 935
+ + H EV AFS+D+ ++ C+ +VKIWN + + T D S ++ C F
Sbjct: 657 LEIKAHEDEVLCCAFSTDD-RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTN 715
Query: 936 GDRHVLV--GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVV 993
H+L+ G+ D L + D+ E + H+ + +F+P+ L +
Sbjct: 716 SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC-----RFSPDDKL-----LA 765
Query: 994 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1053
+ D ++KLW + S N E K ++ L+L + +E V C S D
Sbjct: 766 SCSADGTLKLW--DATSAN-----ERKSINVKQFFLNLEDPQE-DMEVIVKCCSWSADGA 817
Query: 1054 LLAVSLLDTTVKIFFLD--TFKFFISLY-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
+ V+ + KIF D T ++ GH + D S + L V++W
Sbjct: 818 RIMVAAKN---KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 1111 LD----YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD----ADNFERIVTL 1162
D DC H V GV F P F T+S D ++ W+ N ++
Sbjct: 875 TDSRSKVADCR----GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQ 930
Query: 1163 HFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1222
+ +++ VL++D LI +G +DY E V+
Sbjct: 931 EVDVVFQENEVMVLAVDHIRRLQLINGRTGQ-------IDY--------LTEAQVSCCCL 975
Query: 1223 VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN------VYLPLQIQVVTGGGDKSVK 1276
P Y ++G ++ + N RI F + + +++ D ++
Sbjct: 976 SPHLQYIAFGDENGAIEILELVN-NRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQ 1034
Query: 1277 L--WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1334
+ WQL+ R E KD R+ +S+LL+ S
Sbjct: 1035 VWNWQLDKCIFLRGHQETVKDF------------------------RLLKNSRLLSWS-F 1069
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D TVK++ + T H+ VLS D+S+D+T ++ S D+T K+W D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHEL 1129
Query: 1395 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICS 1440
H V F + T +G ++ W+ N E LH+C+
Sbjct: 1130 RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGE---LLHLCA 1172
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 117/604 (19%), Positives = 219/604 (36%), Gaps = 134/604 (22%)
Query: 35 EGRFLAT-GASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVA 93
+ RF+AT + V IW+ E L+ ++H E+ C + + LA
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGE--LVHTYDEH------SEQVNCCHFTNSSHHLLLATG 725
Query: 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD-------- 145
++ LK + L+ + +T GH +++ ++ P LA+ S D + LWD
Sbjct: 726 SSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERK 785
Query: 146 -------------------VVAECGLHRLSG-------------------------HKGV 161
V+ +C G H G
Sbjct: 786 SINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGH 845
Query: 162 ITDIRFMS-QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLIS 220
+ I++ P +H V + V++W+ D+ HL+ V GV + S ++
Sbjct: 846 HSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLT 905
Query: 221 GSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQIINELKNLST 280
S+D +++W + K+ E ++ V ++ +L N T
Sbjct: 906 SSDDQTIRLWETKKVC------KNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRT 959
Query: 281 GKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQK 340
G+ +L +++ C S L AFG +N + + + N Q
Sbjct: 960 GQIDYLTEAQVSCCCLSPHLQY--IAFG-------------DENGAIEILELVNNRIFQS 1004
Query: 341 VQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV 400
+ H ++ ++ D + + SS D +I +W+ + +
Sbjct: 1005 RFQ-----------------HKKTVWHIQFTADEKTLISSSDDAEIQVWN--WQLDKCIF 1045
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ GH V D + + + + S D T+ VW++ G + K H V SCD +
Sbjct: 1046 LRGHQETVKDFRLLKNS-RLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCD-ISHDA 1103
Query: 461 LLIASGSDDCTVKVW---------DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN 511
+S S D T K+W + R N V + AF+ + + TG +
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS--------AFSVDSTLLATGDDNG 1155
Query: 512 DIKMWDLRTNSVV--------QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPY 563
+I++W++ ++ + H VT L SPDG ++S ++ W++
Sbjct: 1156 EIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNV--- 1210
Query: 564 VPGE 567
V GE
Sbjct: 1211 VTGE 1214
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 112/557 (20%), Positives = 213/557 (38%), Gaps = 95/557 (17%)
Query: 38 FLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
LATG+S+ + +WDL E + G + C+ SP D LA +
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSV--------NHCRFSP--DDKLLASCSAD 770
Query: 97 GSLKTFSLDTTDVISTFTGHKSAITVIQY-----DPL---------------GHRLATGS 136
G+LK + +T + +I V Q+ DP G R+ +
Sbjct: 771 GTLKLWD-------ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAA 823
Query: 137 KDTDIVLWDVVAECGLHRL-SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC 195
K+ I L+D+ L + +GH I F P +H V + V++W+ D+
Sbjct: 824 KNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDF--SPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXX 255
HL+ V GV + S ++ S+D +++W + K+
Sbjct: 881 VADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVC------KNSAVMLKQEVDV 934
Query: 256 XXDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG-----ID 310
E ++ V ++ +L N TG+ +L +++ C S L AFG I+
Sbjct: 935 VFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQY--IAFGDENGAIE 992
Query: 311 TTQELRTRSMKRK-------------NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIML 357
+ + R + + DE T+ + ++Q + + +
Sbjct: 993 ILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKC-------IF 1045
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTD 416
L GH + + + + ++ S +D + +W++ G E V H G V+ S D
Sbjct: 1046 LRGHQETVKDFRLLKNSRLLSWS-FDGTVKVWNIITGNKEKDFVC--HQGTVLSCDISHD 1102
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
+ S D+T +W + + +++GH+ V C L+A+G D+ +++W+
Sbjct: 1103 ATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR-CSAFSVDSTLLATGDDNGEIRIWN 1161
Query: 477 -----------PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQ 525
P + A + VT + F+ + +++ G IK W++ T Q
Sbjct: 1162 VSNGELLHLCAPLSEEGAATHGG--WVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQ 1217
Query: 526 KLRGHSDTVTGLSLSPD 542
+ + + +SPD
Sbjct: 1218 TFYTNGTNLKKIHVSPD 1234
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 123/318 (38%), Gaps = 35/318 (11%)
Query: 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182
H D+V F + D ++ + A+ E++ + + H+ VL S
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKL------LEIKAHEDEVLCCAFST 673
Query: 1183 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQ 1240
D IAT S D+ VK+W G+ + H + V F +H+ T S D +K
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL 733
Query: 1241 WDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKD 1295
WD + E T+ + N + P + + D ++KLW + S N E K
Sbjct: 734 WDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW--DATSAN-----ERKS 786
Query: 1296 VSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD--TFKFFISLY 1353
++ L+L + +E V C S D + V+ + KIF D T ++
Sbjct: 787 INVKQFFLNLEDPQE-DMEVIVKCCSWSADGARIMVAAKN---KIFLFDIHTSGLLGEIH 842
Query: 1354 -GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD----YGDCHKSLLAHEDSVTGVTFVP 1408
GH + D S + L V++W D DC H V GV F P
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCR----GHLSWVHGVMFSP 898
Query: 1409 KTHYFFTTSKDGRVKQWD 1426
F T+S D ++ W+
Sbjct: 899 DGSSFLTSSDDQTIRLWE 916
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 8/167 (4%)
Query: 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105
A S D + +A D T+++F +T + + + H+ VL S D IAT S D+
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 1106 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQWDADNFERIVTLH 1163
VK+W G+ + H + V F +H+ T S D +K WD + E T
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNT-- 744
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
++GH V S D L+A+ S D T+K+W + KS+
Sbjct: 745 ----MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSI 787
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 121/295 (41%), Gaps = 26/295 (8%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH 419
GH + + PDG +S D+ I +W C+N VM LK D
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVM---------LKQEVDV-- 934
Query: 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN----SCDPVRRGQLLIASGSDDCTVKVW 475
+F + LAV + + Q I G ++ SC + IA G ++ +++
Sbjct: 935 VFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL 994
Query: 476 DPRKKNQAVS-MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
+ S + V + F + +++ D +I++W+ + + + LRGH +TV
Sbjct: 995 ELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETV 1053
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594
L + S +LS + D TV++W+I + G + K HQ +L C S
Sbjct: 1054 KDFRLLKN-SRLLSWSFDGTVKVWNI---ITGNK-EKDFVCHQ----GTVLSCDISHDAT 1104
Query: 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
++ SADK IW ++L GHNG V F ++ + + I +
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 62/147 (42%)
Query: 86 DSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD 145
D ++A + +L+ F +T + + H+ + + +AT S D + +W+
Sbjct: 632 DGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN 691
Query: 146 VVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTE 205
+ +H H + F + H + + + D F+K+WD + +C TM H
Sbjct: 692 SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNS 751
Query: 206 VWGVCVMREDSYLISGSNDAELKVWNV 232
V +D L S S D LK+W+
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDA 778
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 52/295 (17%)
Query: 886 SEVRALAFSS-DNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT 944
+EV LA L L++ Q+ +SC C P +++ G
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSC------------CCLSPHLQYIAFGD 986
Query: 945 KDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLW 1004
++G + I+++ I + H + +W + D+ +++ D +++W
Sbjct: 987 ENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKT----------LISSSDDAEIQVW 1036
Query: 1005 --QLELVSVNREADEETKDVS--RSHKVLSLLHTRTLKL---------------EEQVLC 1045
QL+ R E KD ++ ++LS T+K+ + VL
Sbjct: 1037 NWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLS 1096
Query: 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1105
+S D+ + + D T KI+ D L GH V S DSTL+ATG +
Sbjct: 1097 CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGE 1156
Query: 1106 VKVWGLDYGDC--------HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
+++W + G+ + H VT + F P S G +K W+
Sbjct: 1157 IRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWN 1209
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
A S D + +A D T+++F +T + + + H+ VL S D IAT S D+
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQWDADNFE 1431
VK+W G+ + H + V F +H+ T S D +K WD + E
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 73/180 (40%), Gaps = 24/180 (13%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
F LKN R L+ V +W++ + G K + + C +S HD+
Sbjct: 1056 FRLLKN--SRLLSWSFDGTVKVWNI--------ITGNKEKDFVCHQGTVLSCDIS--HDA 1103
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
++ + + + K +S D + GH + + LATG + +I +W+V
Sbjct: 1104 TKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
Query: 148 AECGLHRL--------SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM 199
LH + H G +TD+ F P ++S+ ++K W+ TG+ +T
Sbjct: 1164 NGELLHLCAPLSEEGAATHGGWVTDLCF--SPDGKMLISAG--GYIKWWNVVTGESSQTF 1219
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%)
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1423
S D IA+ D+T++V+ + G+ + AHED V F + T S D +VK
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVK 688
Query: 1424 QWDADNFERIVT 1435
W++ E + T
Sbjct: 689 IWNSMTGELVHT 700
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 190/453 (41%), Gaps = 61/453 (13%)
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LI 1097
E++VLC S D +A D VKI+ T K + H V + S L+
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 1098 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD---AD 1154
ATGS D +K+W L+ +C ++ H +SV F P + S DG ++ WD A+
Sbjct: 724 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 1155 NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA-----TGSGDRTV-----KVWGLDYG 1204
+ I FF+S S D D +I + GD+ + KV D
Sbjct: 784 ERKSINVKRFFLS---------SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI- 833
Query: 1205 DCHKS-LLA-----HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN- 1257
H S LLA H ++ F P H V+ W+ D+ ++ + +
Sbjct: 834 --HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 891
Query: 1258 ----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREA--DEETKDVSRSHK--VLSLLHTR 1309
++ P +T D+++++W+ + V N +E V + ++ VL++ + R
Sbjct: 892 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 951
Query: 1310 TLKL------------EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL 1357
L+L E QV C +SP + +A D +KI L + F S GHK
Sbjct: 952 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1011
Query: 1358 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1417
V + + D + + S D ++VW GD + L AH+++V + + + S
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSR-LLSWS 1069
Query: 1418 KDGRVKQWDA--DNFERIVTLH---ICSCSLNS 1445
DG VK W+ ER T H + SC+++S
Sbjct: 1070 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1102
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 24/324 (7%)
Query: 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST 415
+++ H ++ + + DGQ IAS G D+ + ++ E + + H V+ FS+
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS 674
Query: 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR-GQLLIASGSDDCTVKV 474
D +I TCS D+ + +WD G+ + HS VN C + LL+A+GS+D +K+
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 475 WDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV-----VQKLR 528
WD +K +M +T V F+ E + + D +++WD+R+ + V++
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 529 GHSD--------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
S+ V S S DG I+ A N V ++DI ++ +GH
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIV-AAKNKVLLFDIHT---SGLLAEIHTGHHSTI 850
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
+ C +S + CV +W+ +R GH V+ V F P ++
Sbjct: 851 Q----YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 906
Query: 641 ASSDKTIYLGESPLHCDKAGSILR 664
AS D+TI + E+ C + +L+
Sbjct: 907 ASDDQTIRVWETKKVCKNSAIVLK 930
Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 112/604 (18%), Positives = 221/604 (36%), Gaps = 77/604 (12%)
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143
+ D ++A + +L+ F +T + + H+ + + +AT S D + +
Sbjct: 631 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 690
Query: 144 WDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
WD +H H + F ++ H + + + D F+K+WD + +C TM H
Sbjct: 691 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 750
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLT 263
V +D L S S D L++W D+ + ++ K D P+
Sbjct: 751 NSVNHCRFSPDDELLASCSADGTLRLW------DVRSANERKSINVKRFFLSSEDPPE-- 802
Query: 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323
+V++I + + S K + + + L D G+ S +
Sbjct: 803 ----DVEVIVKCCSWSADGDK------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 852
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
D + YD + + ++ + + GH + + PDG ++ D
Sbjct: 853 CD-FSPYDHLAVIALSQYCVELWNIDSRL-KVADCRGHLSWVHGVMFSPDGSSFLTASDD 910
Query: 384 RQIFIWSVYGECEN----------------------------IGVMSGHTGAVMDLKFST 415
+ I +W C+N + +++G TG + L +
Sbjct: 911 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 970
Query: 416 DGC--------HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS 467
C ++ D + + +L + GH V G+ LI+S S
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-S 1029
Query: 468 DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
+D ++VW+ + + + V + +L+ D +K+W++ T + +
Sbjct: 1030 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDF 1088
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587
H TV ++S D + S + D T +IW P + + GH +RC
Sbjct: 1089 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP----LHELKGHN-----GCVRC 1139
Query: 588 -AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---------GHNGSVNDVQFHPKEPI 637
A+S+ G+ + G + + IW+ + ++ + H G V DV F P
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 638 IMSA 641
++SA
Sbjct: 1200 LVSA 1203
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 36/376 (9%)
Query: 888 VRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA-LSVC-FVPGDRHVLVGTK 945
V+ ++S+D ++ A ++V +++ + L I TG ++ + C F P D ++
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
+ + +I + + D H + V PD + +T D+++++W+
Sbjct: 868 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS----------FLTASDDQTIRVWE 917
Query: 1006 LELVSVNREA--DEETKDVSRSHK--VLSLLHTRTLKL------------EEQVLCARVS 1049
+ V N +E V + ++ VL++ + R L+L E QV C +S
Sbjct: 918 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 977
Query: 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
P + +A D +KI L + F S GHK V + + D + + S D ++VW
Sbjct: 978 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037
Query: 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169
GD + L AH+++V + + + S DG VK W+ ++T
Sbjct: 1038 NWQTGD-YVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWN------VITGRIERDFT 1089
Query: 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1229
H+ VLS +S D+T ++ S D+T K+W D L H V F
Sbjct: 1090 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1149
Query: 1230 FTTSKDGRVKQWDADN 1245
T +G ++ W+ +
Sbjct: 1150 ATGDDNGEIRIWNVSD 1165
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 135/579 (23%), Positives = 226/579 (39%), Gaps = 86/579 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACAS--QVKIWNRPSLSCLRTIDTGSYALSVC-FVPGDR 938
+ H EV AFSSD+ + ++ C++ +VKIW+ + + T D S ++ C F
Sbjct: 661 KAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 939 HVLV--GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
H+L+ G+ D L + D+ E + H+ + +F+P+ L + +
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC-----RFSPDDEL-----LASCS 769
Query: 997 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056
D +++LW + R A+E K ++ LS +E V C S D +
Sbjct: 770 ADGTLRLWDV------RSANER-KSINVKRFFLS-SEDPPEDVEVIVKCCSWSADGDKII 821
Query: 1057 VSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD--- 1112
V+ V +F + T ++ GH + D S L V++W +D
Sbjct: 822 VA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 880
Query: 1113 -YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD----ADNFERIVTLHFFIS 1167
DC H V GV F P F T S D ++ W+ N ++ +
Sbjct: 881 KVADCR----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Query: 1168 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227
++ VL++D LIA +G +DY E V+ P
Sbjct: 937 FQENETMVLAVDNIRGLQLIAGKTGQ-------IDY--------LPEAQVSCCCLSPHLE 981
Query: 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287
Y +DG +K + N R+ F+ V G K+V+ Q
Sbjct: 982 YVAFGDEDGAIKIIELPN-NRV----FSSGV-----------GHKKAVRHIQF------- 1018
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKL------EEQVLCARVSPDSKLLAVSLLDTTVKIF 1341
AD +T S V+ + + +T +E V R+ DS+LL+ S D TVK++
Sbjct: 1019 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-FDGTVKVW 1077
Query: 1342 FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1401
+ T + H+ VLS +S D+T ++ S D+T K+W D L H V
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 1402 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICS 1440
F T +G ++ W+ + + LH C+
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNVSDGQ---LLHSCA 1173
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/582 (18%), Positives = 218/582 (37%), Gaps = 100/582 (17%)
Query: 38 FLAT-GASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
++AT A + V IWD A L+ ++H E+ C + + LA +
Sbjct: 678 YIATCSADKKVKIWDS--ATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSND 729
Query: 97 GSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD----------- 145
LK + L+ + +T GH +++ ++ P LA+ S D + LWD
Sbjct: 730 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 789
Query: 146 ----------------VVAECGLHRLSGHKGVIT--------DIRFMS-----QPGH--- 173
V+ +C G K ++ DI GH
Sbjct: 790 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 849
Query: 174 ----------HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSN 223
H V + V++W+ D+ HL+ V GV + S ++ S+
Sbjct: 850 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 909
Query: 224 DAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQIINELKNLSTGKK 283
D ++VW + K+ E + V ++ +L TG+
Sbjct: 910 DQTIRVWETKKVC------KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQK 343
+L +++ C ++ +++ AFG ++ + ++ N+ V V+ +Q
Sbjct: 964 DYLPEAQVSCC--CLSPHLEYVAFG---DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1018
Query: 344 DV-GRT---SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399
G+T S+ + I + G+ + H + D ++ WS G +
Sbjct: 1019 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1078
Query: 400 VMSG--------HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN 451
V++G H G V+ S+D + S D+T +W + + ++KGH+ V
Sbjct: 1079 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR 1138
Query: 452 SCDPVRRGQLLIASGSDDCTVKVWD-----------PRKKNQAVSMNNTYQVTSVAFNDT 500
C +L+A+G D+ +++W+ P + + + + VT V F+
Sbjct: 1139 -CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPD 1196
Query: 501 AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPD 542
++ +++ G +K W++ T Q + + + +SPD
Sbjct: 1197 SKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1236
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 121/316 (38%), Gaps = 31/316 (9%)
Query: 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182
H D+V F + D ++ + A+ E++ + + H+ VL S
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL------LDIKAHEDEVLCCAFSS 674
Query: 1183 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQ 1240
D + IAT S D+ VK+W G + H + V F K+++ T S D +K
Sbjct: 675 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 734
Query: 1241 WDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKD 1295
WD + E T+ + N + P + + D +++LW + R A+E K
Sbjct: 735 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV------RSANER-KS 787
Query: 1296 VSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-G 1354
++ LS +E V C S D + V+ V +F + T ++ G
Sbjct: 788 INVKRFFLS-SEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTG 845
Query: 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD----YGDCHKSLLAHEDSVTGVTFVPKT 1410
H + D S L V++W +D DC H V GV F P
Sbjct: 846 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDG 901
Query: 1411 HYFFTTSKDGRVKQWD 1426
F T S D ++ W+
Sbjct: 902 SSFLTASDDQTIRVWE 917
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
A S D + +A D T+++F +T + + + H+ VL S D + IAT S D+
Sbjct: 628 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 687
Query: 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQWDADNFERIVTLH 1437
VK+W G + H + V F K+++ T S D +K WD + E T+
Sbjct: 688 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 747
Query: 1438 ICSCSLN----SPMNSVHLNSCPA 1457
+ S+N SP + + L SC A
Sbjct: 748 GHTNSVNHCRFSPDDEL-LASCSA 770
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 128/356 (35%), Gaps = 53/356 (14%)
Query: 887 EVRALAFSSDN---LALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG 943
E + + DN L L++ Q+ +SC C P +V G
Sbjct: 939 ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC------------CCLSPHLEYVAFG 986
Query: 944 TKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKL 1003
+DG + I+++ + H + + + D +++ D +++
Sbjct: 987 DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT----------LISSSEDSVIQV 1036
Query: 1004 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1063
W + T D V H T+K R+ DS+LL+ S D T
Sbjct: 1037 WNWQ-----------TGDY-----VFLQAHQETVKD------FRLLQDSRLLSWSF-DGT 1073
Query: 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1123
VK++ + T + H+ VLS +S D+T ++ S D+T K+W D L H
Sbjct: 1074 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG---HKLPVLSLDM 1180
V F T +G ++ W+ + + + + G H V +
Sbjct: 1134 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1193
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1236
S DS + + G +K W + GD ++ + ++ + P + T G
Sbjct: 1194 SPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLG 1247
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 42/251 (16%)
Query: 7 YLRYV----HEGSFNIIASPNCNVVFVTLKNQEG----RFLATG-----ASEDVII--WD 51
+L YV +G+ II PN V + +++ +F A G +SED +I W+
Sbjct: 979 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1038
Query: 52 LRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVIS 111
+ + + L + V DS L+ ++ +G++K +++ T +
Sbjct: 1039 WQTGD-----------YVFLQAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIER 1086
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
FT H+ + + ++ S D +W LH L GH G + F S
Sbjct: 1087 DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLD 1145
Query: 172 GHHFVVSSAKDTF-VKIWDADTGDCFKT---------MAAHLTEVWGVCVMREDSYLISG 221
G ++++ D ++IW+ G + A H V VC + L+S
Sbjct: 1146 G--ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1203
Query: 222 SNDAELKVWNV 232
LK WNV
Sbjct: 1204 G--GYLKWWNV 1212
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 190/453 (41%), Gaps = 61/453 (13%)
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LI 1097
E++VLC S D +A D VKI+ T K + H V + S L+
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 1098 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD---AD 1154
ATGS D +K+W L+ +C ++ H +SV F P + S DG ++ WD A+
Sbjct: 717 ATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 1155 NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIA-----TGSGDRTV-----KVWGLDYG 1204
+ I FF+S S D D +I + GD+ + KV D
Sbjct: 777 ERKSINVKRFFLS---------SEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDI- 826
Query: 1205 DCHKS-LLA-----HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN- 1257
H S LLA H ++ F P H V+ W+ D+ ++ + +
Sbjct: 827 --HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884
Query: 1258 ----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREA--DEETKDVSRSHK--VLSLLHTR 1309
++ P +T D+++++W+ + V N +E V + ++ VL++ + R
Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944
Query: 1310 TLKL------------EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL 1357
L+L E QV C +SP + +A D +KI L + F S GHK
Sbjct: 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004
Query: 1358 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1417
V + + D + + S D ++VW GD + L AH+++V + + + S
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YVFLQAHQETVKDFRLLQDSR-LLSWS 1062
Query: 1418 KDGRVKQWDA--DNFERIVTLH---ICSCSLNS 1445
DG VK W+ ER T H + SC+++S
Sbjct: 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAISS 1095
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 145/324 (44%), Gaps = 24/324 (7%)
Query: 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST 415
+++ H ++ + + DGQ IAS G D+ + ++ E + + H V+ FS+
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-EKLLDIKAHEDEVLCCAFSS 667
Query: 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR-GQLLIASGSDDCTVKV 474
D +I TCS D+ + +WD G+ + HS VN C + LL+A+GS+D +K+
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 475 WDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV-----VQKLR 528
WD +K +M +T V F+ E + + D +++WD+R+ + V++
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 529 GHSD--------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
S+ V S S DG I+ A N V ++DI ++ +GH
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIV-AAKNKVLLFDIHT---SGLLAEIHTGHHSTI 843
Query: 581 EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640
+ C +S + CV +W+ +R GH V+ V F P ++
Sbjct: 844 Q----YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLT 899
Query: 641 ASSDKTIYLGESPLHCDKAGSILR 664
AS D+TI + E+ C + +L+
Sbjct: 900 ASDDQTIRVWETKKVCKNSAIVLK 923
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 112/604 (18%), Positives = 221/604 (36%), Gaps = 77/604 (12%)
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143
+ D ++A + +L+ F +T + + H+ + + +AT S D + +
Sbjct: 624 SQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKI 683
Query: 144 WDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
WD +H H + F ++ H + + + D F+K+WD + +C TM H
Sbjct: 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT 743
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLT 263
V +D L S S D L++W D+ + ++ K D P+
Sbjct: 744 NSVNHCRFSPDDELLASCSADGTLRLW------DVRSANERKSINVKRFFLSSEDPPE-- 795
Query: 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRK 323
+V++I + + S K + + + L D G+ S +
Sbjct: 796 ----DVEVIVKCCSWSADGDK------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
D + YD + + ++ + + GH + + PDG ++ D
Sbjct: 846 CD-FSPYDHLAVIALSQYCVELWNIDSRL-KVADCRGHLSWVHGVMFSPDGSSFLTASDD 903
Query: 384 RQIFIWSVYGECEN----------------------------IGVMSGHTGAVMDLKFST 415
+ I +W C+N + +++G TG + L +
Sbjct: 904 QTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ 963
Query: 416 DGC--------HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS 467
C ++ D + + +L + GH V G+ LI+S S
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-S 1022
Query: 468 DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
+D ++VW+ + + + V + +L+ D +K+W++ T + +
Sbjct: 1023 EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDF 1081
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587
H TV ++S D + S + D T +IW P + + GH +RC
Sbjct: 1082 TCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP----LHELKGHN-----GCVRC 1132
Query: 588 -AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---------GHNGSVNDVQFHPKEPI 637
A+S+ G+ + G + + IW+ + ++ + H G V DV F P
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 638 IMSA 641
++SA
Sbjct: 1193 LVSA 1196
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/376 (22%), Positives = 159/376 (42%), Gaps = 36/376 (9%)
Query: 888 VRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYA-LSVC-FVPGDRHVLVGTK 945
V+ ++S+D ++ A ++V +++ + L I TG ++ + C F P D ++
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
+ + +I + + D H + V PD + +T D+++++W+
Sbjct: 861 QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS----------FLTASDDQTIRVWE 910
Query: 1006 LELVSVNREA--DEETKDVSRSHK--VLSLLHTRTLKL------------EEQVLCARVS 1049
+ V N +E V + ++ VL++ + R L+L E QV C +S
Sbjct: 911 TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS 970
Query: 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109
P + +A D +KI L + F S GHK V + + D + + S D ++VW
Sbjct: 971 PHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030
Query: 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169
GD + L AH+++V + + + S DG VK W+ ++T
Sbjct: 1031 NWQTGD-YVFLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWN------VITGRIERDFT 1082
Query: 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1229
H+ VLS +S D+T ++ S D+T K+W D L H V F
Sbjct: 1083 CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILL 1142
Query: 1230 FTTSKDGRVKQWDADN 1245
T +G ++ W+ +
Sbjct: 1143 ATGDDNGEIRIWNVSD 1158
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 135/579 (23%), Positives = 226/579 (39%), Gaps = 86/579 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACAS--QVKIWNRPSLSCLRTIDTGSYALSVC-FVPGDR 938
+ H EV AFSSD+ + ++ C++ +VKIW+ + + T D S ++ C F
Sbjct: 654 KAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 939 HVLV--GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
H+L+ G+ D L + D+ E + H+ + +F+P+ L + +
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC-----RFSPDDEL-----LASCS 762
Query: 997 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056
D +++LW + R A+E K ++ LS +E V C S D +
Sbjct: 763 ADGTLRLWDV------RSANER-KSINVKRFFLS-SEDPPEDVEVIVKCCSWSADGDKII 814
Query: 1057 VSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD--- 1112
V+ V +F + T ++ GH + D S L V++W +D
Sbjct: 815 VA-AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873
Query: 1113 -YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD----ADNFERIVTLHFFIS 1167
DC H V GV F P F T S D ++ W+ N ++ +
Sbjct: 874 KVADCR----GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Query: 1168 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227
++ VL++D LIA +G +DY E V+ P
Sbjct: 930 FQENETMVLAVDNIRGLQLIAGKTGQ-------IDY--------LPEAQVSCCCLSPHLE 974
Query: 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287
Y +DG +K + N R+ F+ V G K+V+ Q
Sbjct: 975 YVAFGDEDGAIKIIELPN-NRV----FSSGV-----------GHKKAVRHIQF------- 1011
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKL------EEQVLCARVSPDSKLLAVSLLDTTVKIF 1341
AD +T S V+ + + +T +E V R+ DS+LL+ S D TVK++
Sbjct: 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS-FDGTVKVW 1070
Query: 1342 FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1401
+ T + H+ VLS +S D+T ++ S D+T K+W D L H V
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 1402 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICS 1440
F T +G ++ W+ + + LH C+
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNVSDGQ---LLHSCA 1166
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 110/582 (18%), Positives = 218/582 (37%), Gaps = 100/582 (17%)
Query: 38 FLAT-GASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
++AT A + V IWD A L+ ++H E+ C + + LA +
Sbjct: 671 YIATCSADKKVKIWDS--ATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSND 722
Query: 97 GSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWD----------- 145
LK + L+ + +T GH +++ ++ P LA+ S D + LWD
Sbjct: 723 FFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782
Query: 146 ----------------VVAECGLHRLSGHKGVIT--------DIRFMS-----QPGH--- 173
V+ +C G K ++ DI GH
Sbjct: 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHST 842
Query: 174 ----------HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSN 223
H V + V++W+ D+ HL+ V GV + S ++ S+
Sbjct: 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902
Query: 224 DAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQIINELKNLSTGKK 283
D ++VW + K+ E + V ++ +L TG+
Sbjct: 903 DQTIRVWETKKVC------KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQK 343
+L +++ C ++ +++ AFG ++ + ++ N+ V V+ +Q
Sbjct: 957 DYLPEAQVSCC--CLSPHLEYVAFG---DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011
Query: 344 DV-GRT---SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399
G+T S+ + I + G+ + H + D ++ WS G +
Sbjct: 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071
Query: 400 VMSG--------HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN 451
V++G H G V+ S+D + S D+T +W + + ++KGH+ V
Sbjct: 1072 VITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVR 1131
Query: 452 SCDPVRRGQLLIASGSDDCTVKVWD-----------PRKKNQAVSMNNTYQVTSVAFNDT 500
C +L+A+G D+ +++W+ P + + + + VT V F+
Sbjct: 1132 -CSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-VTDVCFSPD 1189
Query: 501 AECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPD 542
++ +++ G +K W++ T Q + + + +SPD
Sbjct: 1190 SKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPD 1229
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/316 (23%), Positives = 121/316 (38%), Gaps = 31/316 (9%)
Query: 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182
H D+V F + D ++ + A+ E++ + + H+ VL S
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKL------LDIKAHEDEVLCCAFSS 667
Query: 1183 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQ 1240
D + IAT S D+ VK+W G + H + V F K+++ T S D +K
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 1241 WDADNFERIVTLHFNPNV-----YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKD 1295
WD + E T+ + N + P + + D +++LW + R A+E K
Sbjct: 728 WDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV------RSANER-KS 780
Query: 1296 VSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY-G 1354
++ LS +E V C S D + V+ V +F + T ++ G
Sbjct: 781 INVKRFFLS-SEDPPEDVEVIVKCCSWSADGDKIIVA-AKNKVLLFDIHTSGLLAEIHTG 838
Query: 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD----YGDCHKSLLAHEDSVTGVTFVPKT 1410
H + D S L V++W +D DC H V GV F P
Sbjct: 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR----GHLSWVHGVMFSPDG 894
Query: 1411 HYFFTTSKDGRVKQWD 1426
F T S D ++ W+
Sbjct: 895 SSFLTASDDQTIRVWE 910
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
Query: 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
A S D + +A D T+++F +T + + + H+ VL S D + IAT S D+
Sbjct: 621 ACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKK 680
Query: 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF--TTSKDGRVKQWDADNFERIVTLH 1437
VK+W G + H + V F K+++ T S D +K WD + E T+
Sbjct: 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF 740
Query: 1438 ICSCSLN----SPMNSVHLNSCPA 1457
+ S+N SP + + L SC A
Sbjct: 741 GHTNSVNHCRFSPDDEL-LASCSA 763
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/356 (19%), Positives = 128/356 (35%), Gaps = 53/356 (14%)
Query: 887 EVRALAFSSDN---LALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG 943
E + + DN L L++ Q+ +SC C P +V G
Sbjct: 932 ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC------------CCLSPHLEYVAFG 979
Query: 944 TKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKL 1003
+DG + I+++ + H + + + D +++ D +++
Sbjct: 980 DEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT----------LISSSEDSVIQV 1029
Query: 1004 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTT 1063
W + T D V H T+K R+ DS+LL+ S D T
Sbjct: 1030 WNWQ-----------TGDY-----VFLQAHQETVKD------FRLLQDSRLLSWSF-DGT 1066
Query: 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1123
VK++ + T + H+ VLS +S D+T ++ S D+T K+W D L H
Sbjct: 1067 VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG---HKLPVLSLDM 1180
V F T +G ++ W+ + + + + G H V +
Sbjct: 1127 NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCF 1186
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1236
S DS + + G +K W + GD ++ + ++ + P + T G
Sbjct: 1187 SPDSKTLVSAGG--YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLG 1240
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 42/251 (16%)
Query: 7 YLRYV----HEGSFNIIASPNCNVVFVTLKNQEG----RFLATG-----ASEDVII--WD 51
+L YV +G+ II PN V + +++ +F A G +SED +I W+
Sbjct: 972 HLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031
Query: 52 LRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVIS 111
+ + + L + V DS L+ ++ +G++K +++ T +
Sbjct: 1032 WQTGD-----------YVFLQAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNVITGRIER 1079
Query: 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQP 171
FT H+ + + ++ S D +W LH L GH G + F S
Sbjct: 1080 DFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLD 1138
Query: 172 GHHFVVSSAKDTF-VKIWDADTGDCFKT---------MAAHLTEVWGVCVMREDSYLISG 221
G ++++ D ++IW+ G + A H V VC + L+S
Sbjct: 1139 G--ILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Query: 222 SNDAELKVWNV 232
LK WNV
Sbjct: 1197 G--GYLKWWNV 1205
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 56/308 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ ++I SGS D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDK 129
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 605 VYIWDTTT 612
+ +W T
Sbjct: 310 IRVWQVMT 317
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI----GHNSN 198
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA 257
Query: 1235 DG 1236
G
Sbjct: 258 TG 259
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 73/341 (21%)
Query: 1077 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1130
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
T Y + S D ++ WD + T + GHK V+S+D+ +++I +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD------VATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
S D+T+KVW + G C +LL H D V+ V VP ++ D D+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN-------------EKADDDS----- 166
Query: 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE------------ADEETKDVSR 1298
+ +++ G DK VK W L + + A + ++
Sbjct: 167 -------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 1299 SHK----VLSLLHTR----TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-- 1348
+ K +L L + TL +++V SP+ LA + T +K+F LD
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 1349 -----FISLYGHKLP-VLSLDMSYDSTLIATGSGDRTVKVW 1383
F P +SL S D + G D ++VW
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 57/260 (21%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 71 C-------TLTADGA-----------------------------------YALSASWDKT 88
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLAT 143
Query: 573 MSGHQHNFEKNLL---RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629
+ GH + + A S ++AG+ DK V W+ +I GHN ++N +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 630 QFHPKEPIIMSASSDKTIYL 649
P +I SA D I L
Sbjct: 203 TASPDGTLIASAGKDGEIML 222
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 77
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 138 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 72 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 130 TIKVWTIK 137
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 45/285 (15%)
Query: 918 CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977
C T D G+YALS + D L + D+ GE + H ++ SV +
Sbjct: 71 CTLTAD-GAYALSASW------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRT 1036
+++G DK++K+W + + + +LL H
Sbjct: 118 KAS----------MIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDW 150
Query: 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1096
+ V + DS + + D VK + L+ F+ GH + +L S D TL
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
IA+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ 268
Query: 1157 ERIVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 156 VVPNEK-------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I+LW++ A+ ++ LS V + ++ + + +++A T +K++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 264
Query: 190 AD 191
D
Sbjct: 265 LD 266
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 1427 ADNFERIVTL 1436
+ + TL
Sbjct: 225 LAAKKAMYTL 234
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 619 LPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
L GHNG V + +P +++SAS DKT+ + K G +RS KG H
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 129/308 (41%), Gaps = 56/308 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ +I SGS D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDK 129
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNR 249
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 605 VYIWDTTT 612
+ +W T
Sbjct: 310 IRVWQVXT 317
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V S+D+ ++ I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ--IEADFI----GHNSN 198
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLAFSPNRYWLAAATA 257
Query: 1235 DG 1236
G
Sbjct: 258 TG 259
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/295 (23%), Positives = 111/295 (37%), Gaps = 60/295 (20%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 71 C-------TLTADGA-----------------------------------YALSASWDKT 88
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-----QCLAT 143
Query: 573 MSGHQHNFEKNLL---RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629
+ GH + + A S ++AG+ DK V W+ +I GHN ++N +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKXVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 630 QFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCC 684
P +I SA D I L L KA L S + V ++ +R L
Sbjct: 203 TASPDGTLIASAGKDGEIXLWN--LAAKKAXYTL-SAQDEVFSLAFSPNRYWLAA 254
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 22/198 (11%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKA 119
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM------SYDSTLIATG 1190
+ S+D +K W + +L GH V + + DS I +
Sbjct: 120 SXIISGSRDKTIKVW-------TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD-------- 1242
D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 173 GNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXY 232
Query: 1243 -ADNFERIVTLHFNPNVY 1259
+ + +L F+PN Y
Sbjct: 233 TLSAQDEVFSLAFSPNRY 250
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V S+D+ ++ I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQ 187
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 77
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 138 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHN 196
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIXLWNL 225
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 106/267 (39%), Gaps = 32/267 (11%)
Query: 1167 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1220
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 1221 TFVPKTHYFFTTSKDGRVKQWD---ADNFERIVTLHFNPNVYLPLQIQ---VVTGGGDKS 1274
T Y + S D ++ WD + ++R V H + + + + +++G DK+
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVXSVDIDKKASXIISGSRDKT 130
Query: 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRTLKLEEQVLCARVSPDSKLLAVSL 1333
+K+W + + + +LL H + V + DS + +
Sbjct: 131 IKVWTI-----------------KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 1334 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1393
D VK + L+ F+ GH + +L S D TLIA+ D + +W L +
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYT 233
Query: 1394 LLAHEDSVTGVTFVPKTHYFFTTSKDG 1420
L A +D V + F P ++ + G
Sbjct: 234 LSA-QDEVFSLAFSPNRYWLAAATATG 259
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 72 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 130 TIKVWTIK 137
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 45/285 (15%)
Query: 918 CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977
C T D G+YALS + D L + D+ GE + H ++ SV +
Sbjct: 71 CTLTAD-GAYALSASW------------DKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRT 1036
+++G DK++K+W + + + +LL H
Sbjct: 118 KAS----------XIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDW 150
Query: 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1096
+ V + DS + + D VK + L+ F+ GH + +L S D TL
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
IA+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 211 IASAGKDGEIXLWNLAAKKAXYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ 268
Query: 1157 ERIVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 156 VVPNEK-------ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I LW++ A+ + LS V + ++ + + +++A T +K++
Sbjct: 209 TLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 264
Query: 190 AD 191
D
Sbjct: 265 LD 266
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKA 119
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 120 SXIISGSRDKTIKVW 134
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 165 DSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 56/308 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ ++I SGS D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDK 129
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 605 VYIWDTTT 612
+ +W T
Sbjct: 310 IRVWQVMT 317
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI----GHNSN 198
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA 257
Query: 1235 DG 1236
G
Sbjct: 258 TG 259
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 73/341 (21%)
Query: 1077 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1130
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
T Y + S D ++ WD + T + GHK V+S+D+ +++I +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD------VATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
S D+T+KVW + G C +LL H D V+ V VP ++ D D+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN-------------EKADDDS----- 166
Query: 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE------------ADEETKDVSR 1298
+ +++ G DK VK W L + + A + ++
Sbjct: 167 -------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 1299 SHK----VLSLLHTR----TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-- 1348
+ K +L L + TL +++V SP+ LA + T +K+F LD
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 1349 -----FISLYGHKLP-VLSLDMSYDSTLIATGSGDRTVKVW 1383
F P +SL S D + G D ++VW
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 57/260 (21%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 71 C-------TLTADGA-----------------------------------YALSASWDKT 88
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLAT 143
Query: 573 MSGHQHNFEKNLL---RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629
+ GH + + A S ++AG+ DK V W+ +I GHN ++N +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 630 QFHPKEPIIMSASSDKTIYL 649
P +I SA D I L
Sbjct: 203 TASPDGTLIASAGKDGEIML 222
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 77
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 138 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 72 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 130 TIKVWTIK 137
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 135/343 (39%), Gaps = 41/343 (11%)
Query: 868 GSTDSVRHLRSIHAQGHHSEVRALAFSSD--NLALVSACASQVKIW-----NRPSLSCLR 920
G+++ V LR +GH+ V +LA S+ NL L ++ + W ++ +R
Sbjct: 1 GASNEVLVLRGT-LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR 59
Query: 921 TIDTGSYALSVCFVPGD-RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQ 979
+ S+ + C + D + L + D L + D+ GE + H ++ SV +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRTLK 1038
+++G DK++K+W + + + +LL H +
Sbjct: 120 S----------MIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDWVS 152
Query: 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1098
V + DS + + D VK + L+ F+ GH + +L S D TLIA
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158
+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYL 270
Query: 1159 IVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 156 VVPNEK-------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I+LW++ A+ ++ LS V + ++ + + +++A T +K++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 264
Query: 190 AD 191
D
Sbjct: 265 LD 266
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 1427 ADNFERIVTL 1436
+ + TL
Sbjct: 225 LAAKKAMYTL 234
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 619 LPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
L GHNG V + +P +++SAS DKT+ + K G +RS KG H
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 56/308 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 7 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ ++I SGS D
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDK 123
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 124 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 243
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 244 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 303
Query: 605 VYIWDTTT 612
+ +W T
Sbjct: 304 IRVWQVMT 311
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI----GHNSN 192
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA 251
Query: 1235 DG 1236
G
Sbjct: 252 TG 253
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 73/341 (21%)
Query: 1077 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1130
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
T Y + S D ++ WD + T + GHK V+S+D+ +++I +G
Sbjct: 66 TLTADGAYALSASWDKTLRLWD------VATGETYQRFVGHKSDVMSVDIDKKASMIISG 119
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
S D+T+KVW + G C +LL H D V+ V VP ++ D D+
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN-------------EKADDDS----- 160
Query: 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE------------ADEETKDVSR 1298
+ +++ G DK VK W L + + A + ++
Sbjct: 161 -------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 207
Query: 1299 SHK----VLSLLHTR----TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-- 1348
+ K +L L + TL +++V SP+ LA + T +K+F LD
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 266
Query: 1349 -----FISLYGHKLP-VLSLDMSYDSTLIATGSGDRTVKVW 1383
F P +SL S D + G D ++VW
Sbjct: 267 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 96/259 (37%), Gaps = 55/259 (21%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 65 C-------TLTADGA-----------------------------------YALSASWDKT 82
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 83 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLAT 137
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSA--DKCVYIWDTTTRRIAYKLPGHNGSVNDVQ 630
+ GH + + VT SA DK V W+ +I GHN ++N +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 631 FHPKEPIIMSASSDKTIYL 649
P +I SA D I L
Sbjct: 198 ASPDGTLIASAGKDGEIML 216
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 138
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 139 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 181
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 17 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 71
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 72 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 132 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 190
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 191 SNINTLTASPDGTLIASAGKDGEIMLWNL 219
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 66 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 124 TIKVWTIK 131
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 45/285 (15%)
Query: 918 CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977
C T D G+YALS + D L + D+ GE + H ++ SV +
Sbjct: 65 CTLTAD-GAYALSASW------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRT 1036
+++G DK++K+W + + + +LL H
Sbjct: 112 KAS----------MIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDW 144
Query: 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1096
+ V + DS + + D VK + L+ F+ GH + +L S D TL
Sbjct: 145 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 204
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
IA+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 205 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ 262
Query: 1157 ERIVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 263 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 150 VVPNEK-------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I+LW++ A+ ++ LS V + ++ + + +++A T +K++
Sbjct: 203 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 258
Query: 190 AD 191
D
Sbjct: 259 LD 260
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 113
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 114 SMIISGSRDKTIKVW 128
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 159 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Query: 1427 ADNFERIVTL 1436
+ + TL
Sbjct: 219 LAAKKAMYTL 228
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 619 LPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
L GHNG V + +P +++SAS DKT+ + K G +RS KG H
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 130/308 (42%), Gaps = 56/308 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ ++I SGS D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDK 129
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 605 VYIWDTTT 612
+ +W T
Sbjct: 310 IRVWQVMT 317
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI----GHNSN 198
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA 257
Query: 1235 DG 1236
G
Sbjct: 258 TG 259
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 73/341 (21%)
Query: 1077 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1130
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
T Y + S D ++ WD + T + GHK V+S+D+ +++I +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD------VATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
S D+T+KVW + G C +LL H D V+ V VP ++ D D+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN-------------EKADDDS----- 166
Query: 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE------------ADEETKDVSR 1298
+ +++ G DK VK W L + + A + ++
Sbjct: 167 -------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 1299 SHK----VLSLLHTR----TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-- 1348
+ K +L L + TL +++V SP+ LA + T +K+F LD
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 1349 -----FISLYGHKLP-VLSLDMSYDSTLIATGSGDRTVKVW 1383
F P +SL S D + G D ++VW
Sbjct: 273 DLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 57/260 (21%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 71 C-------TLTADGA-----------------------------------YALSASWDKT 88
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLAT 143
Query: 573 MSGHQHNFEKNLL---RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629
+ GH + + A S ++AG+ DK V W+ +I GHN ++N +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 630 QFHPKEPIIMSASSDKTIYL 649
P +I SA D I L
Sbjct: 203 TASPDGTLIASAGKDGEIML 222
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 77
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 138 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 72 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 130 TIKVWTIK 137
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 135/343 (39%), Gaps = 41/343 (11%)
Query: 868 GSTDSVRHLRSIHAQGHHSEVRALAFSSD--NLALVSACASQVKIW-----NRPSLSCLR 920
G+++ V LR +GH+ V +LA S+ NL L ++ + W ++ +R
Sbjct: 1 GASNEVLVLRGT-LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVR 59
Query: 921 TIDTGSYALSVCFVPGD-RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQ 979
+ S+ + C + D + L + D L + D+ GE + H ++ SV +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRTLK 1038
+++G DK++K+W + + + +LL H +
Sbjct: 120 S----------MIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDWVS 152
Query: 1039 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIA 1098
V + DS + + D VK + L+ F+ GH + +L S D TLIA
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA 212
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158
+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 213 SAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYL 270
Query: 1159 IVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 271 VDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 156 VVPNEK-------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I+LW++ A+ ++ LS V + ++ + + +++A T +K++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 264
Query: 190 AD 191
D
Sbjct: 265 LD 266
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 1427 ADNFERIVTL 1436
+ + TL
Sbjct: 225 LAAKKAMYTL 234
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 619 LPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
L GHNG V + +P +++SAS DKT+ + K G +RS KG H
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 56/304 (18%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
LEGH G + S P+ + S+ D+ + W + G+ + GV GH+ V D
Sbjct: 13 LEGHNGWVTSLATSAGQPN--LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ DG + + S D+TL +WD+ G+ ++ GH + V S D ++ ++I SGS D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII-SGSRDK 129
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVAF------NDTAECVLTGGIDNDIKMWDLRTNSVV 524
T+KVW + + A + + V+ V +D + +++ G D +K W+L +
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI-----------------------R 561
GH+ + L+ SPDG+ I S D + +W++ R
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249
Query: 562 PYVPGERC--VKVMS---------------GHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
++ +KV S G+ E + + AWS G + AG D
Sbjct: 250 YWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 605 VYIW 608
+ +W
Sbjct: 310 IRVW 313
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1121 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
L H D V+ V VP + D VK W+ + F+ + F GH
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI----GHNSN 198
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ +L S D TLIA+ D + +W L +L A +D V + F P ++ +
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA 257
Query: 1235 DG 1236
G
Sbjct: 258 TG 259
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 133/341 (39%), Gaps = 73/341 (21%)
Query: 1077 SLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGV 1130
+L GH V SL S L+ + S D+T+ W L +G +S H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 1131 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
T Y + S D ++ WD + T + GHK V+S+D+ +++I +G
Sbjct: 72 TLTADGAYALSASWDKTLRLWD------VATGETYQRFVGHKSDVMSVDIDKKASMIISG 125
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
S D+T+KVW + G C +LL H D V+ V VP ++ D D+
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN-------------EKADDDS----- 166
Query: 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE------------ADEETKDVSR 1298
+ +++ G DK VK W L + + A + ++
Sbjct: 167 -------------VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213
Query: 1299 SHK----VLSLLHTR----TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF-- 1348
+ K +L L + TL +++V SP+ LA + T +K+F LD
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVD 272
Query: 1349 -----FISLYGHKLP-VLSLDMSYDSTLIATGSGDRTVKVW 1383
F P +SL S D + G D ++VW
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 57/260 (21%)
Query: 399 GVMSGHTGAVMDLKFSTDGCHIF-TCSTDQTLAVW-----DLEKGQRIKKMKGHSTFVNS 452
G + GH G V L S ++ + S D+TL W D + G ++ KGHS V
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 453 CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND 512
C L A G+ L+ D
Sbjct: 71 C-------TLTADGA-----------------------------------YALSASWDKT 88
Query: 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+++WD+ T Q+ GH V + + S I+S + D T+++W I+ +C+
Sbjct: 89 LRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLAT 143
Query: 573 MSGHQHNFEKNLL---RCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629
+ GH + + A S ++AG+ DK V W+ +I GHN ++N +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGN-DKMVKAWNLNQFQIEADFIGHNSNINTL 202
Query: 630 QFHPKEPIIMSASSDKTIYL 649
P +I SA D I L
Sbjct: 203 TASPDGTLIASAGKDGEIML 222
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 7/103 (6%)
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D T++++ + T + + GHK V+S+D+ +++I +GS D+T+KVW + G C +L
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144
Query: 1395 LAHEDSVTGVTFVPKTHY------FFTTSKDGRVKQWDADNFE 1431
L H D V+ V VP + D VK W+ + F+
Sbjct: 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ 187
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 28 FVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDS 87
T Q L+ + +I W L ++ +P + G H V + D
Sbjct: 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-----GHSHIVQDCTLTADG 77
Query: 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+ A + +L+ + + T + F GHKS + + D + +GS+D I +W +
Sbjct: 78 AYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHH----FVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
+C L L GH ++ +R + ++S+ D VK W+ + H
Sbjct: 138 GQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN 196
Query: 204 TEVWGVCVMREDSYLISGSNDAELKVWNV 232
+ + + + + + S D E+ +WN+
Sbjct: 197 SNINTLTASPDGTLIASAGKDGEIMLWNL 225
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE-----CGLHRLSGHKGVITDI 165
T GH +T + + L + S+D ++ W + + + GH ++ D
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
+ + +S++ D +++WD TG+ ++ H ++V V + ++ S +ISGS D
Sbjct: 72 TLTADGA--YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 226 ELKVWNVR 233
+KVW ++
Sbjct: 130 TIKVWTIK 137
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 107/285 (37%), Gaps = 45/285 (15%)
Query: 918 CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977
C T D G+YALS + D L + D+ GE + H ++ SV +
Sbjct: 71 CTLTAD-GAYALSASW------------DKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL-HTRT 1036
+++G DK++K+W + + + +LL H
Sbjct: 118 KAS----------MIISGSRDKTIKVWTI-----------------KGQCLATLLGHNDW 150
Query: 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTL 1096
+ V + DS + + D VK + L+ F+ GH + +L S D TL
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
IA+ D + +W L +L A +D V + F P ++ + G +K + D
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQ 268
Query: 1157 ERIVTLHFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVW 1199
+ L + Y +SL S D + G D ++VW
Sbjct: 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 11/122 (9%)
Query: 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG 129
++P EK + DS + A + +K ++L+ + + F GH S I + P G
Sbjct: 156 VVPNEK-------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 130 HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+A+ KD +I+LW++ A+ ++ LS V + ++ + + +++A T +K++
Sbjct: 209 TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFS----LAFSPNRYWLAAATATGIKVFS 264
Query: 190 AD 191
D
Sbjct: 265 LD 266
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
S GH V ++ D + S D+T+++W + G+ ++ + H+ V V K
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 1411 HYFFTTSKDGRVKQW 1425
+ S+D +K W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 34.3 bits (77), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 29/70 (41%)
Query: 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
DS I + D+ VK W L+ + H ++ +T P + KDG + W+
Sbjct: 165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Query: 1427 ADNFERIVTL 1436
+ + TL
Sbjct: 225 LAAKKAMYTL 234
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 619 LPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVH 671
L GHNG V + +P +++SAS DKT+ + K G +RS KG H
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 22/257 (8%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV-YGECENIGVMSGHTGAVMDLKFSTD 416
L GH G ++ S+ + I S DR + +W+ GEC I + GHT V +
Sbjct: 155 LVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGEC--IHTLYGHTSTVRCMHLHEK 210
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
+ + S D TL VWD+E GQ + + GH V V+ + SG+ D VKVWD
Sbjct: 211 --RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC---VQYDGRRVVSGAYDFMVKVWD 265
Query: 477 PRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVT 535
P + ++ +T +V S+ F+ V++G +D I++WD+ T + + L GH +
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323
Query: 536 GLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLY 595
G+ L + ++S D+TV+IWDI+ +C++ + G N ++ + C + +
Sbjct: 324 GMELKDN--ILVSGNADSTVKIWDIKT----GQCLQTLQG--PNKHQSAVTCL-QFNKNF 374
Query: 596 VTAGSADKCVYIWDTTT 612
V S D V +WD T
Sbjct: 375 VITSSDDGTVKLWDLKT 391
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 44/332 (13%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L GH V++ + + I +GS D T+KVW G C ++L+ H V + +
Sbjct: 114 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDN 170
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
+ S D +K W+A+ E I TL YGH V M + +GS D T++
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTL------YGHTSTVRC--MHLHEKRVVSGSRDATLR 222
Query: 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257
VW ++ G C L+ H +V V + + + + D VK WD + + TL + N
Sbjct: 223 VWDIETGQCLHVLMGHVAAVRCVQYDGR--RVVSGAYDFMVKVWDPETETCLHTLQGHTN 280
Query: 1258 VYLPLQ---IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
LQ I VV+G D S+++W +E + +HT T
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVE--------------------TGNCIHTLT---G 317
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---HKLPVLSLDMSYDSTLI 1371
Q L + + +L D+TVKI+ + T + +L G H+ V L ++ +
Sbjct: 318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--QFNKNFV 375
Query: 1372 ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403
T S D TVK+W L G+ ++L+ E +G
Sbjct: 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Score = 87.8 bits (216), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 35/316 (11%)
Query: 380 SGYDRQIFI---WSVYGECENIGVMSGHTGAVMD-LKFSTDGCHIFTCSTDQTLAVWDLE 435
S Y RQ I W GE ++ V+ GH V+ L+F G I + S D TL VW
Sbjct: 91 SAYIRQHRIDTNWR-RGELKSPKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAV 147
Query: 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSV 495
G+ ++ + GH+ V S R ++I SGS D T+KVW+ + + + + T
Sbjct: 148 TGKCLRTLVGHTGGVWSSQ--MRDNIII-SGSTDRTLKVWNA-ETGECIHTLYGHTSTVR 203
Query: 496 AFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTV 555
+ + V++G D +++WD+ T + L GH V + DG ++S A D V
Sbjct: 204 CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMV 261
Query: 556 RIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615
++WD E C+ + GH + + G++V +GS D + +WD T
Sbjct: 262 KVWDPET----ETCLHTLQGHTNRVY------SLQFDGIHVVSGSLDTSIRVWDVETGNC 311
Query: 616 AYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVN 675
+ L GH + ++ K+ I++S ++D T+ + + K G L++ +G N
Sbjct: 312 IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDI-----KTGQCLQTLQGP-----N 359
Query: 676 DKHRQILCCHGNDNVV 691
+ C N N V
Sbjct: 360 KHQSAVTCLQFNKNFV 375
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 14/177 (7%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
+ +L GH + C +Y DG+ + S YD + +W E + + GHT V L+F
Sbjct: 232 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF- 287
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DG H+ + S D ++ VWD+E G I + GH + + + ++ SG+ D TVK+
Sbjct: 288 -DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGNADSTVKI 343
Query: 475 WDPRKKN--QAVSMNNTYQ--VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
WD + Q + N +Q VT + FN V+T D +K+WDL+T ++ L
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNL 398
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 81/138 (58%), Gaps = 8/138 (5%)
Query: 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRL 155
+ +L+ + ++T + GH +A+ +QYD G R+ +G+ D + +WD E LH L
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTL 275
Query: 156 SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRED 215
GH + ++F G H VVS + DT +++WD +TG+C T+ H + G+ + +D
Sbjct: 276 QGHTNRVYSLQF---DGIH-VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KD 329
Query: 216 SYLISGSNDAELKVWNVR 233
+ L+SG+ D+ +K+W+++
Sbjct: 330 NILVSGNADSTVKIWDIK 347
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/345 (23%), Positives = 140/345 (40%), Gaps = 52/345 (15%)
Query: 911 WNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQEL 970
W R L + + + C ++ G+ D L + G+ L + H+ +
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 162
Query: 971 WSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1030
WS Q N+ +++G D+++K+W E T V
Sbjct: 163 WS-----SQMRDNI-------IISGSTDRTLKVWNAETGECIHTLYGHTSTV-------- 202
Query: 1031 LLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
R + L E+ RV S+ D T++++ ++T + L GH V +
Sbjct: 203 ----RCMHLHEK----RVVSGSR-------DATLRVWDIETGQCLHVLMGHVAAVRCV-- 245
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
YD + +G+ D VKVW + C +L H + V + F + + S D ++
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
WD + I TL GH+ L+ M ++ +G+ D TVK+W + G C ++L
Sbjct: 304 WDVETGNCIHTL------TGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTL 355
Query: 1211 LA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1252
H+ +VT + F ++ T+S DG VK WD E I L
Sbjct: 356 QGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 17/224 (7%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D T+K++ T K +L GH V S M +I +GS DRT+KVW + G+C +L
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTL 195
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180
H +V + K + S+D ++ WD + + LH L GH V +
Sbjct: 196 YGHTSTVRCMHLHEK--RVVSGSRDATLRVWDIETGQ---CLHV---LMGHVAAVRCV-- 245
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
YD + +G+ D VKVW + C +L H + V + F + + S D ++
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303
Query: 1241 WDADNFERIVTLHFNPNVYLPLQIQ---VVTGGGDKSVKLWQLE 1281
WD + I TL + ++ ++++ +V+G D +VK+W ++
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 130/309 (42%), Gaps = 35/309 (11%)
Query: 1133 VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192
V K + + K ++Q D R L L GH V++ + + I +GS
Sbjct: 79 VIKPGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSD 137
Query: 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1252
D T+KVW G C ++L+ H V + + + S D +K W+A+ E I TL
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTLKVWNAETGECIHTL 195
Query: 1253 HFNPNVYLPLQI---QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309
+ + + + + +VV+G D ++++W +E LH
Sbjct: 196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE--------------------TGQCLHV- 234
Query: 1310 TLKLEEQVLCAR-VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS 1368
L V R V D + + D VK++ +T +L GH V SL +D
Sbjct: 235 ---LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDG 289
Query: 1369 TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428
+ +GS D +++VW ++ G+C +L H+ +G+ K + + + D VK WD
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIK 347
Query: 1429 NFERIVTLH 1437
+ + TL
Sbjct: 348 TGQCLQTLQ 356
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 44 SEDVIIWDLRLAEKALLLPGE-KHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTF 102
+ED ++W + E+ + P K ++ PG H + S ++ + G LK+
Sbjct: 53 AEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK-SAYIRQHRIDTNWRRGELKSP 111
Query: 103 SLDTTDVISTFTGHKS-AITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGV 161
+ GH IT +Q+ G+R+ +GS D + +W V L L GH G
Sbjct: 112 KV--------LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISG 221
+ + SQ + ++S + D +K+W+A+TG+C T+ H + V C+ + ++SG
Sbjct: 162 V----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV--RCMHLHEKRVVSG 215
Query: 222 SNDAELKVWNV 232
S DA L+VW++
Sbjct: 216 SRDATLRVWDI 226
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 23/203 (11%)
Query: 34 QEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVA 93
E R ++ + +WD+ + +L G H +D ++
Sbjct: 208 HEKRVVSGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGRRVVSG 255
Query: 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH 153
+ +K + +T + T GH + + +Q+D G + +GS DT I +WDV +H
Sbjct: 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIH 313
Query: 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA---HLTEVWGVC 210
L+GH+ + + + + +VS D+ VKIWD TG C +T+ H + V C
Sbjct: 314 TLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV--TC 367
Query: 211 VMREDSYLISGSNDAELKVWNVR 233
+ +++I+ S+D +K+W+++
Sbjct: 368 LQFNKNFVITSSDDGTVKLWDLK 390
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 119/270 (44%), Gaps = 43/270 (15%)
Query: 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955
DN+ + + +K+WN + C+ T+ G + C ++ V+ G++D L + DI
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREA 1015
G+ L + H + V Q++ +VV+G D VK+W
Sbjct: 228 TGQCLHVLMGHVAAVRCV-----QYDGR-------RVVSGAYDFMVKVW----------- 264
Query: 1016 DEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF 1075
D ET+ L L T ++ + D + LDT+++++ ++T
Sbjct: 265 DPETE------TCLHTLQGHTNRVYS------LQFDGIHVVSGSLDTSIRVWDVETGNCI 312
Query: 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA---HEDSVTGVTF 1132
+L GH+ L+ M ++ +G+ D TVK+W + G C ++L H+ +VT + F
Sbjct: 313 HTLTGHQ--SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 1133 VPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
++ T+S DG VK WD E I L
Sbjct: 371 --NKNFVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 137/330 (41%), Gaps = 63/330 (19%)
Query: 155 LSGHKG-VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213
L GH VIT ++F +VS + D +K+W A TG C +T+ H VW MR
Sbjct: 114 LKGHDDHVITCLQFCGNR----IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS-SQMR 168
Query: 214 EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQIIN 273
D+ +ISGS D LKVWN I T S + ++
Sbjct: 169 -DNIIISGSTDRTLKVWNAETGECIHTLYGH-------------------TSTVRCMHLH 208
Query: 274 ELKNLSTGKKKWLQVFRL--ALCISSITLNIDDFAFGIDTTQELRTRSMKRKND-EVTVY 330
E + +S + L+V+ + C+ + ++ + Q R + D V V+
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYDFMVKVW 264
Query: 331 DREKNYKVQKVQKDVGRTSNL-FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389
D E + +Q R +L F I ++ G D I +W
Sbjct: 265 DPETETCLHTLQGHTNRVYSLQFDGIHVVSG--------------------SLDTSIRVW 304
Query: 390 SV-YGECENIGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGH 446
V G C I ++GH M+LK + + + + D T+ +WD++ GQ ++ ++G
Sbjct: 305 DVETGNC--IHTLTGHQSLTSGMELKDNI----LVSGNADSTVKIWDIKTGQCLQTLQGP 358
Query: 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
+ ++ ++ + + + SDD TVK+WD
Sbjct: 359 NKHQSAVTCLQFNKNFVITSSDDGTVKLWD 388
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 10/137 (7%)
Query: 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV-VAECGLHR 154
+ +LK +S T + T GH + Q + + +GS D + +W+ EC +H
Sbjct: 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGEC-IHT 194
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
L GH + + + VVS ++D +++WD +TG C + H+ V CV +
Sbjct: 195 LYGHTSTVRCMHLHEKR----VVSGSRDATLRVWDIETGQCLHVLMGHVAAV--RCVQYD 248
Query: 215 DSYLISGSNDAELKVWN 231
++SG+ D +KVW+
Sbjct: 249 GRRVVSGAYDFMVKVWD 265
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 84/181 (46%), Gaps = 22/181 (12%)
Query: 25 NVVFVTLKNQEGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSP 83
+V V +GR + +GA + ++ +WD P + L G + V L
Sbjct: 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWD----------PETETCLHTLQGHTNRVYSL-- 285
Query: 84 NHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143
D + + S++ + ++T + I T TGH+S + ++ + L +G+ D+ + +
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI 343
Query: 144 WDVVAECGLHRLSG---HKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA 200
WD+ L L G H+ +T ++F +FV++S+ D VK+WD TG+ + +
Sbjct: 344 WDIKTGQCLQTLQGPNKHQSAVTCLQF----NKNFVITSSDDGTVKLWDLKTGEFIRNLV 399
Query: 201 A 201
Sbjct: 400 T 400
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSV--CFVPGDRHV 940
GH S + DN+ + S VKIW+ + CL+T+ + S C V
Sbjct: 317 GHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 375
Query: 941 LVGTKDGRLLIVDIGAGEILEDI 963
+ + DG + + D+ GE + ++
Sbjct: 376 ITSSDDGTVKLWDLKTGEFIRNL 398
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 50/348 (14%)
Query: 338 VQKVQKDVGRTSNLFAPIML-----LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY 392
V+K K GRT+ F P L L+GH G+++ + P+ +I S+ D ++ +W+
Sbjct: 37 VEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL 96
Query: 393 GECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL-EKGQRIKKM------KG 445
+ + H VM+ F+ +G + D ++++L + R M G
Sbjct: 97 TS-QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG 155
Query: 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-------NNTYQVTSVAFN 498
H + +SC V + + +GS D T +WD Q +S+ +T V S++ N
Sbjct: 156 HKGYASSCQYVPDQETRLITGSGDQTCVLWDV-TTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 499 D-TAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556
A ++G D +++WDLR T+ V+ GH + + PDG + + D T R
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Query: 557 IWDIRPYVPGERCVKVMSGHQ---HNFEKN--------LLRCAWSVSGLYVTAGSADKCV 605
++D+R +GHQ +N E + + A+S+SG + AG ++
Sbjct: 275 LFDMR------------TGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 606 YIWDTTTRRIAYKLP----GHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
Y+WDT + L H G ++ + + + S DK + +
Sbjct: 323 YVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 29/235 (12%)
Query: 1206 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI--VTLHFNPNV----Y 1259
C ++L H V + + P+ ++ + S+DGR+ W+A ++ + LH P V +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAF 116
Query: 1260 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319
P V GG D + ++ L +R+ + V HK + C
Sbjct: 117 APNGQSVACGGLDSACSIFNLS-SQADRDGNMPVSRVLTGHKGYA------------SSC 163
Query: 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP------VLSLDM-SYDSTLIA 1372
V L D T ++ + T + IS++G + P VLSL + S ++ +
Sbjct: 164 QYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANMFI 222
Query: 1373 TGSGDRTVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
+GS D TV++W L ++ HE + V F P F T S DG + +D
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 131/340 (38%), Gaps = 49/340 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGS-YALSVCFVPGDRH 939
QGH +V +L ++ + +VSA ++ +WN + I + + F P +
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS 122
Query: 940 VLVGTKDGRLLIVDI-------GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQV 992
V G D I ++ G + + H S +PDQ + ++
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ---------ETRL 173
Query: 993 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV-SPD 1051
+TG GD++ LW DV+ ++ VL + S +
Sbjct: 174 ITGSGDQTCVLW----------------DVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217
Query: 1052 SKLLAVSLLDTTVKIFFLD-TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
+ + DTTV+++ L T + + +GH+ + S+ D TGS D T +++
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 1111 LDYGDCHKSLLAHEDS---------VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161
+ G H+ + + + VT V F F +G WD E ++
Sbjct: 278 MRTG--HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLN 335
Query: 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201
L + H+ + L +S D + + TGS D+ +K+W
Sbjct: 336 LGTLQN--SHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 55/273 (20%)
Query: 1118 KSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLY--GHKLP 1174
+ L H+ + +VP + T S D WD +RI F S + GH
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRI---SIFGSEFPSGHTAD 207
Query: 1175 VLSLDM-SYDSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232
VLSL + S ++ + +GS D TV++W L ++ HE + V F P F T
Sbjct: 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292
S DG + +D + T H Q+QV NRE D
Sbjct: 268 SDDGTCRLFD------MRTGH---------QLQVY------------------NREPD-- 292
Query: 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL 1352
R+ L ++ + + ++L A S + +LL V L T +
Sbjct: 293 -----RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV--LNLGTLQ----- 340
Query: 1353 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1385
H+ + L +S D + + TGS D+ +K+W
Sbjct: 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 20/213 (9%)
Query: 31 LKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQL 90
+ +QE R + + ++WD+ ++ + E G +V LS N ++ +
Sbjct: 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSE-----FPSGHTADVLSLSINSLNANM 220
Query: 91 AVAYT-NGSLKTFSLD-TTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA 148
++ + + +++ + L T+ + T+ GH+ I +++ P G R TGS D L+D+
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 149 ECGLH-------RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA- 200
L R ++T + F F S D +V WD + +
Sbjct: 281 GHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV--WDTLLAEMVLNLGT 338
Query: 201 ---AHLTEVWGVCVMREDSYLISGSNDAELKVW 230
+H + + + + S L +GS D LK+W
Sbjct: 339 LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 39/184 (21%)
Query: 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438
S D + +W + + GH G + +KF DG T S D T ++D+ G
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 439 RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN 498
+++ V +P + + + + VTSVAF+
Sbjct: 283 QLQ------------------------------VYNREPDRNDNELPI-----VTSVAFS 307
Query: 499 DTAECVLTGGIDNDIKMWDLRTNSVVQKL----RGHSDTVTGLSLSPDGSYILSNAMDNT 554
+ + G + D +WD +V L H ++ L LS DGS + + + D
Sbjct: 308 ISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKN 367
Query: 555 VRIW 558
++IW
Sbjct: 368 LKIW 371
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 72/176 (40%), Gaps = 14/176 (7%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G +V L + + + A +G L ++ T+ H + + P G
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 131 RLATGSKDTDIVLWDVVAECGL-------HRLSGHKGVITDIRFMSQPGHHFVVSSAKDT 183
+A G D+ ++++ ++ L+GHKG + +++ + S T
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181
Query: 184 FVKIWDADTGDCFKTMAA-----HLTEVWGVCVMREDSYL-ISGSNDAELKVWNVR 233
V +WD TG + H +V + + ++ + ISGS D +++W++R
Sbjct: 182 CV-LWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 145/315 (46%), Gaps = 42/315 (13%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSV-----YGECENIGV----MSGHT 405
L GH G + C + + S+ D+ + W EC + G+ + GH+
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSEC-SYGLPDRRLEGHS 67
Query: 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSC--DPVRRGQLLI 463
V D+ S +G + S D +L +W+L+ GQ K GH+ V S P R I
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR---QI 124
Query: 464 ASGSDDCTVKVWDPRKK--NQAVSMNNTYQVTSVAFNDT--AECVLTGGIDNDIKMWDLR 519
SG D ++VW+ + + + +T V+ V F+ + A +++GG DN +K+WDL
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
T +V L+GH++ VT +++SPDGS S+ D R+WD+ GE ++ +G N
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMAAGAPIN 241
Query: 580 ---FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL-PGHNGSVNDVQFHPKE 635
F N Y + +K + I+D + I +L P H GS V P+
Sbjct: 242 QICFSPN----------RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIV---PEC 288
Query: 636 PIIMSASSDKTIYLG 650
I ++ T+Y G
Sbjct: 289 VSIAWSADGSTLYSG 303
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 15/212 (7%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST--DG 417
GH ++ + PD + I S G D + +W+V GEC + HT V ++FS D
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDA 166
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
I + D + VWDL G+ + +KGH+ +V S G L AS D ++WD
Sbjct: 167 PVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL-CASSDKDGVARLWDL 225
Query: 478 RKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKL----RGHS 531
K M + + F N C T + I+++DL ++ +L +G
Sbjct: 226 TKGEALSEMAAGAPINQICFSPNRYWMCAAT---EKGIRIFDLENKDIIVELAPEHQGSK 282
Query: 532 DTV---TGLSLSPDGSYILSNAMDNTVRIWDI 560
V ++ S DGS + S DN +R+W +
Sbjct: 283 KIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 18/213 (8%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L GH V + +S + + S D ++++W L G C L H V V F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
+ +D ++ W+ E + TL + + + S D+ +I +G D VK
Sbjct: 123 QIVSGGRDNALRVWNVKG-ECMHTLSR--GAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH---- 1253
VW L G L H + VT VT P ++ KDG + WD E + +
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP 239
Query: 1254 -----FNPNVYLPLQIQVVTGGGDKSVKLWQLE 1281
F+PN Y + +K ++++ LE
Sbjct: 240 INQICFSPNRYW------MCAATEKGIRIFDLE 266
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 115/259 (44%), Gaps = 35/259 (13%)
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
D L + ++ G+ H++++ SVA PD Q+V+GG D ++++W
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR----------QIVSGGRDNALRVWN 137
Query: 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP--DSKLLAVSLLDTT 1063
++ E +SR HT + V C R SP D+ ++ D
Sbjct: 138 VK--------GECMHTLSRG------AHT------DWVSCVRFSPSLDAPVIVSGGWDNL 177
Query: 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1123
VK++ L T + L GH V S+ +S D +L A+ D ++W L G+ S +A
Sbjct: 178 VKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEA-LSEMAA 236
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP-VLSLDMSY 1182
+ + F P ++ ++ G ++ +D +N + IV L +P +S+ S
Sbjct: 237 GAPINQICFSPNRYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSA 295
Query: 1183 DSTLIATGSGDRTVKVWGL 1201
D + + +G D ++VWG+
Sbjct: 296 DGSTLYSGYTDNVIRVWGV 314
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 3/164 (1%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G V ++ +++ + A + SL+ ++L F GH + + + P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLS--GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188
++ +G +D + +W+V EC +H LS H ++ +RF +VS D VK+W
Sbjct: 123 QIVSGGRDNALRVWNVKGEC-MHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 189 DADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
D TG + H V V V + S S D ++W++
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL 225
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 113 FTGHKSAITVI---QYDPLGHRLATGSKDTDIVLWDV-----VAEC--GL--HRLSGHKG 160
TGH+ +T + Q ++ + S+D ++ W +EC GL RL GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLIS 220
++D+ +S G+ F VS++ D +++W+ G C H +V V ++ ++S
Sbjct: 69 FVSDVA-LSNNGN-FAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVS 126
Query: 221 GSNDAELKVWNVR 233
G D L+VWNV+
Sbjct: 127 GGRDNALRVWNVK 139
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 92/283 (32%), Gaps = 102/283 (36%)
Query: 1168 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227
L GH V + +S + + S D ++++W L G C L H V V F
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF----- 117
Query: 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287
S D R Q+V+GG D ++++W ++
Sbjct: 118 -----SPDNR---------------------------QIVSGGRDNALRVWNVK------ 139
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK 1347
E +SR HT + V C R SP
Sbjct: 140 --GECMHTLSRG------AHT------DWVSCVRFSP----------------------- 162
Query: 1348 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1407
S D+ +I +G D VKVW L G L H + VT VT
Sbjct: 163 -----------------SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS 205
Query: 1408 PKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSV 1450
P ++ KDG + WD E + + + +P+N +
Sbjct: 206 PDGSLCASSDKDGVARLWDLTKGEALSEM-----AAGAPINQI 243
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 65/171 (38%), Gaps = 24/171 (14%)
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1051
V+ D S++LW L+ + TKDV L SPD
Sbjct: 82 AVSASWDHSLRLWNLQNGQCQYKFLGHTKDV---------------------LSVAFSPD 120
Query: 1052 SKLLAVSLLDTTVKIFFLD-TFKFFISLYGHK--LPVLSLDMSYDSTLIATGSGDRTVKV 1108
++ + D ++++ + +S H + + S D+ +I +G D VKV
Sbjct: 121 NRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 1109 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159
W L G L H + VT VT P ++ KDG + WD E +
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 883 GHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGS---YALSVCFVPG-D 937
GH +V ++AFS DN +VS + +++WN C+ T+ G+ + V F P D
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECMHTLSRGAHTDWVSCVRFSPSLD 165
Query: 938 RHVLV-GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPD 978
V+V G D + + D+ G ++ D+ H+ + SV + PD
Sbjct: 166 APVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPD 207
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 142/307 (46%), Gaps = 38/307 (12%)
Query: 370 YHPDGQYIASSGYDRQIFIWSVYGE---CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426
++P G +AS G DR+I IW G+ C+++ + GH V + +S G ++ + S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-LSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 427 QTLAVW--DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW--DPRKKNQ 482
T +W + + + + ++GH V S G LL A+ S D +V VW D + +
Sbjct: 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL-ATCSRDKSVWVWEVDEEDEYE 141
Query: 483 AVSMNN--TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV--QKLRGHSDTVTGLS 538
VS+ N T V V ++ + E + + D+ +K++ + V L GH TV L+
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 539 LSPDGSYILSNAMDNTVRIWDIRPYVPGE-------------RCVKVMSGHQHNFEKNLL 585
P G + S + D TVRIW R Y+PG +C+ +SG ++
Sbjct: 202 FDPSGQRLASCSDDRTVRIW--RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIA 259
Query: 586 RCAWSVSGLYVTAGSADKC-VYIWD-------TTTRRIAYKLPGHNGSVNDVQFHPKEPI 637
C ++G TA D V+ D T A+ H+ VN V ++PKEP
Sbjct: 260 WC--QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317
Query: 638 IMSASSD 644
++++ SD
Sbjct: 318 LLASCSD 324
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 32/212 (15%)
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH--KSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
TL+A+ GDR +++WG + GD KS+L+ H+ +V V + P +Y + S D
Sbjct: 29 TLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 1241 W--DADNFERIVTLHFNPN-----VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293
W + D+FE + TL + N + P + T DKSV +W E DEE
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW---------EVDEED 138
Query: 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFL--DTFKFFIS 1351
+ ++ +S+L++ T ++ V P +LLA + D TVK++ D + +
Sbjct: 139 E-----YECVSVLNSHTQDVKHVVW----HPSQELLASASYDDTVKLYREEEDDWVCCAT 189
Query: 1352 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
L GH+ V SL +A+ S DRTV++W
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 104/247 (42%), Gaps = 38/247 (15%)
Query: 959 ILEDIPAH-SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADE 1017
+L +PAH W +A +NP L + + GGD+ +++W E
Sbjct: 7 LLGRVPAHPDSRCWFLA-----WNPAGTL-----LASCGGDRRIRIWGTE---------- 46
Query: 1018 ETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF--FLDTFKFF 1075
D VLS H RT++ SP LA + D T I+ D F+
Sbjct: 47 --GDSWICKSVLSEGHQRTVRK------VAWSPCGNYLASASFDATTCIWKKNQDDFECV 98
Query: 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTF 1132
+L GH+ V S+ + L+AT S D++V VW +D D C L +H V V +
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 1133 VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192
P + S D VK + + + + +L GH+ V SL +A+ S
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCC----ATLEGHESTVWSLAFDPSGQRLASCSD 214
Query: 1193 DRTVKVW 1199
DRTV++W
Sbjct: 215 DRTVRIW 221
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 139/316 (43%), Gaps = 40/316 (12%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCH--KSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
TL+A+ GDR +++WG + GD KS+L+ H+ +V V + P +Y + S D
Sbjct: 29 TLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 1151 W--DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--- 1205
W + D+FE + TL GH+ V S+ + L+AT S D++V VW +D D
Sbjct: 88 WKKNQDDFECVTTLE------GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 1206 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW--DADNFERIVTLHFNPN-----V 1258
C L +H V V + P + S D VK + + D++ TL + +
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 201
Query: 1259 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVS-RSHKVLSLLHTRTLKLEEQV 1317
+ P ++ + D++V++W+ L + D S + LS H+RT+ +
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY--DIA 259
Query: 1318 LCARVSPDSKLLAVSLLDTTVKIF----FLDTFKFFISLYGHKLPVLSLDMS------YD 1367
C + LA + D +++F D + SL H S D++ +
Sbjct: 260 WCQL----TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKE 315
Query: 1368 STLIATGSGDRTVKVW 1383
L+A+ S D V W
Sbjct: 316 PGLLASCSDDGEVAFW 331
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 12/161 (7%)
Query: 495 VAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL---RGHSDTVTGLSLSPDGSYILSNAM 551
+A+N + + G D I++W +S + K GH TV ++ SP G+Y+ S +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611
D T IW + CV + GH E + AW+ SG + S DK V++W+
Sbjct: 82 DATTCIW--KKNQDDFECVTTLEGH----ENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 612 TR---RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
L H V V +HP + ++ SAS D T+ L
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 3/129 (2%)
Query: 105 DTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITD 164
D + ++T GH++ + + + P G+ LAT S+D + +W+V E +S D
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152
Query: 165 IR-FMSQPGHHFVVSSAKDTFVKIWDADTGD--CFKTMAAHLTEVWGVCVMREDSYLISG 221
++ + P + S++ D VK++ + D C T+ H + VW + L S
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC 212
Query: 222 SNDAELKVW 230
S+D +++W
Sbjct: 213 SDDRTVRIW 221
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 1248 RIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307
R L +NP L + + GGD+ +++W E D VLS H
Sbjct: 18 RCWFLAWNPAGTL-----LASCGGDRRIRIWGTE------------GDSWICKSVLSEGH 60
Query: 1308 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF--FLDTFKFFISLYGHKLPVLSLDMS 1365
RT++ SP LA + D T I+ D F+ +L GH+ V S+ +
Sbjct: 61 QRTVRK------VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA 114
Query: 1366 YDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1422
L+AT S D++V VW +D D C L +H V V + P + S D V
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTV 174
Query: 1423 K 1423
K
Sbjct: 175 K 175
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 31/232 (13%)
Query: 352 FAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV--YGECENIGVMSGHTGAVM 409
F + LEGH E+ + P G +A+ D+ +++W V E E + V++ HT V
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI--KKMKGHSTFVNSCDPVRRGQLLIASGS 467
+ + + + S D T+ ++ E+ + ++GH + V S GQ L AS S
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL-ASCS 213
Query: 468 DDCTVKVWDPR--KKNQAVSMNNT----------YQVTSVAFNDTAECVLTGGI-----D 510
DD TV++W Q V+ + + S D A C LTG + D
Sbjct: 214 DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGD 273
Query: 511 NDIKMWDLRTNSVVQKL---------RGHSDTVTGLSLSPDGSYILSNAMDN 553
+ I+++ NS Q+ + HS V ++ +P +L++ D+
Sbjct: 274 DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDD 325
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 523 VVQKLRGHSDTVTG-LSLSPDGSYILSNAMDNTVRIWDIRPYVPGER--CVKVMS-GHQH 578
++ ++ H D+ L+ +P G+ + S D +RIW G+ C V+S GHQ
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE----GDSWICKSVLSEGHQ- 61
Query: 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR--RIAYKLPGHNGSVNDVQFHPKEP 636
+ + + AWS G Y+ + S D IW L GH V V + P
Sbjct: 62 ---RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 637 IIMSASSDKTIYLGESPLHCD-KAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLF 694
++ + S DK++++ E + + S+L S V +V +++L D+ V L+
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFF---ISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1379
+P LLA D ++I+ + + + GH+ V + S +A+ S D T
Sbjct: 25 NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84
Query: 1380 VKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437
+W + D C +L HE+ V V + P + T S+D V W+ D + +
Sbjct: 85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----Y 140
Query: 1438 ICSCSLNSPMNSV-HLNSCPALE-----ASNDIAELLME------CLATMKEYE 1479
C LNS V H+ P+ E + +D +L E C AT++ +E
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHE 194
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%)
Query: 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA---ECGLHRLSGHKGVITDIRFMSQP 171
GH+ + + + P G+ LA+ S D +W EC + L GH+ + + + P
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC-VTTLEGHENEVKSVAWA--P 115
Query: 172 GHHFVVSSAKDTFVKIWDADTGD---CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228
+ + + ++D V +W+ D D C + +H +V V L S S D +K
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Query: 229 V 229
+
Sbjct: 176 L 176
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV--------------MSG 403
LEGH ++ + P GQ +AS DR + IW Y GV +SG
Sbjct: 190 LEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 404 -HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK---------MKGHSTFVN-- 451
H+ + D+ + + T D + V+ + ++ + HS VN
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCV 309
Query: 452 SCDPVRRGQLLIASGSDDCTVKVW 475
+ +P G L+AS SDD V W
Sbjct: 310 AWNPKEPG--LLASCSDDGEVAFW 331
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 118/262 (45%), Gaps = 27/262 (10%)
Query: 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416
+L GH G + C +Y D + I + D + +W V E + + H AV+ L+F+
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV-NTGEMLNTLIHHCEAVLHLRFNNG 224
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRI---KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
+ TCS D+++AVWD+ I + + GH VN D I S S D T+K
Sbjct: 225 --MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIK 279
Query: 474 VWDPRKKNQAVSMNNTYQ-VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
VW+ ++N + + + + D V++G DN I++WD+ + ++ L GH +
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEE 337
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWD----IRPYVP-GERCVKVMSGHQHNFEKNLLRC 587
V + D I+S A D +++WD + P P G C++ + H +
Sbjct: 338 LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR----- 390
Query: 588 AWSVSGLYVTAGSADKCVYIWD 609
+ + S D + IWD
Sbjct: 391 -LQFDEFQIVSSSHDDTILIWD 411
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 17/255 (6%)
Query: 1029 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSL 1088
L +H R+ + + V C + D + + L D T+KI+ +T + L GH VL L
Sbjct: 123 LQRIHCRS-ETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 1089 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1148
YD +I TGS D TV+VW ++ G+ +L+ H ++V + F T SKD +
Sbjct: 180 --QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSI 235
Query: 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1208
WD + I + GH+ V +D +D I + SGDRT+KVW + +
Sbjct: 236 AVWDMASPTDITLRRVLV---GHRAAVNVVD--FDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 1209 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQI---Q 1265
+L H+ + + + + + S D ++ WD + + L + + ++ +
Sbjct: 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR 348
Query: 1266 VVTGGGDKSVKLWQL 1280
+V+G D +K+W L
Sbjct: 349 IVSGAYDGKIKVWDL 363
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 147/332 (44%), Gaps = 47/332 (14%)
Query: 874 RH-LRSIHAQGHHSE-VRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDTGSYALS 930
RH L+ IH + S+ V L + D+ +VS + +KIW++ +L C R + TG
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSV 176
Query: 931 VCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQI 990
+C +R ++ G+ D + + D+ GE+L + H + A+L +FN +
Sbjct: 177 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCE-----AVLHLRFNNGM------ 225
Query: 991 QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1050
+VT D+S+ +W + D++ R + + + V
Sbjct: 226 -MVTCSKDRSIAVWDM----------ASPTDIT----------LRRVLVGHRAAVNVVDF 264
Query: 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
D K + + D T+K++ T +F +L GHK + L Y L+ +GS D T+++W
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWD 322
Query: 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD---ADNFERIVTLHFFIS 1167
++ G C + L HE+ V + F K + + DG++K WD A + +
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 380
Query: 1168 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1199
L H V L +D I + S D T+ +W
Sbjct: 381 LVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 410
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 125/303 (41%), Gaps = 56/303 (18%)
Query: 1144 KDGRVKQWDADNFE--RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201
+D +K WD + E RI+T GH VL L YD +I TGS D TV+VW +
Sbjct: 151 RDNTIKIWDKNTLECKRILT--------GHTGSVLCL--QYDERVIITGSSDSTVRVWDV 200
Query: 1202 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN-----FERIVTLHFNP 1256
+ G+ +L+ H ++V + F T SKD + WD + R++ H
Sbjct: 201 NTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258
Query: 1257 -NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315
NV +V+ GD+++K+W N E + ++ + ++ L R
Sbjct: 259 VNVVDFDDKYIVSASGDRTIKVW-------NTSTCEFVRTLNGHKRGIACLQYR------ 305
Query: 1316 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375
+L+ D T++++ ++ L GH+ V + +D+ I +G+
Sbjct: 306 ----------DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGA 353
Query: 1376 GDRTVKVWGLDYG---------DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
D +KVW L C ++L+ H V + F ++S D + WD
Sbjct: 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 411
Query: 1427 ADN 1429
N
Sbjct: 412 FLN 414
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 36/232 (15%)
Query: 463 IASGSDDCTVKVWDPRK-KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN 521
I SG D T+K+WD + + + +T V + +++ ++TG D+ +++WD+ T
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV--IITGSSDSTVRVWDVNTG 203
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVK-VMSGHQHNF 580
++ L H + V L L + +++ + D ++ +WD+ P + ++ V+ GH
Sbjct: 204 EMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMAS--PTDITLRRVLVGH---- 255
Query: 581 EKNLLRCAWSVSGL---YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPI 637
R A +V Y+ + S D+ + +W+T+T L GH + +Q+ ++ +
Sbjct: 256 -----RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRL 308
Query: 638 IMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDN 689
++S SSD TI L + + C G+ LR +G H +++ C DN
Sbjct: 309 VVSGSSDNTIRLWD--IEC---GACLRVLEG---------HEELVRCIRFDN 346
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 39 LATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNG 97
+ +G ++ I IWD E +L G L L +D + ++
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL------------QYDERVIITGSSDS 193
Query: 98 SLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA--ECGLHR- 154
+++ + ++T ++++T H A+ ++++ + T SKD I +WD+ + + L R
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 155 LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRE 214
L GH+ + + F + ++VS++ D +K+W+ T + +T+ H + C+
Sbjct: 252 LVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYR 305
Query: 215 DSYLISGSNDAELKVWNV 232
D ++SGS+D +++W++
Sbjct: 306 DRLVVSGSSDNTIRLWDI 323
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 84 NHDSSQLAVAYTNGSLKTFSLDT----------TDVI--STFTGHKSAITVIQYDPLGHR 131
+H + L + + NG + T S D TD+ GH++A+ V+ +D
Sbjct: 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKY 268
Query: 132 LATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD 191
+ + S D I +W+ + L+GHK I +++ + VVS + D +++WD +
Sbjct: 269 IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR----LVVSGSSDNTIRLWDIE 324
Query: 192 TGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
G C + + H V C+ ++ ++SG+ D ++KVW++
Sbjct: 325 CGACLRVLEGHEELV--RCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 31 LKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQL 90
L+ G + + +WD+ P + +L G + V + + D +
Sbjct: 219 LRFNNGMMVTCSKDRSIAVWDM-------ASPTDITLRRVLVGHRAAVNVV--DFDDKYI 269
Query: 91 AVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQY-DPLGHRLATGSKDTDIVLWDVVAE 149
A + ++K ++ T + + T GHK I +QY D L + +GS D I LWD+ E
Sbjct: 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL---VVSGSSDNTIRLWDI--E 324
Query: 150 CG--LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD--------ADTGD-CFKT 198
CG L L GH+ ++ IRF ++ +VS A D +K+WD A G C +T
Sbjct: 325 CGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT 380
Query: 199 MAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+ H V+ + ++ ++S S+D + +W+
Sbjct: 381 LVEHSGRVFR--LQFDEFQIVSSSHDDTILIWD 411
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 40/326 (12%)
Query: 339 QKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFI---------- 388
+K+ + + RT +L+ + G G +F +K PDG +S Y R ++
Sbjct: 56 KKLIERMVRTDSLWRGLAERRGWGQYLFKNK-PPDGNAPPNSFY-RALYPKIIQDIETIE 113
Query: 389 --WSV-YGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG 445
W + I S + V L++ D I + D T+ +WD + + + G
Sbjct: 114 SNWRCGRHSLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG 171
Query: 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECV 504
H+ V ++ + +I +GS D TV+VWD ++ ++ V + FN+ +
Sbjct: 172 HTGSVLC---LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--M 226
Query: 505 LTGGIDNDIKMWDLRTNSVVQKLR---GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
+T D I +WD+ + + + R GH V + D YI+S + D T+++W+
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS 284
Query: 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG 621
V+ ++GH+ R V +GS+D + +WD L G
Sbjct: 285 TC----EFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGACLRVLEG 334
Query: 622 HNGSVNDVQFHPKEPIIMSASSDKTI 647
H V ++F K I+S + D I
Sbjct: 335 HEELVRCIRFDNKR--IVSGAYDGKI 358
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 1303 LSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSL 1362
L +H R+ + + V C + D + + L D T+KI+ +T + L GH VL L
Sbjct: 123 LQRIHCRS-ETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 179
Query: 1363 DMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1422
YD +I TGS D TV+VW ++ G+ +L+ H ++V + F T SKD +
Sbjct: 180 --QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSI 235
Query: 1423 KQWD 1426
WD
Sbjct: 236 AVWD 239
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 119 AITVIQYDPLGHRLATGSKDTDIVLWDV-VAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
+ +QYD ++ +G +D I +WD EC L+GH G + +++ ++
Sbjct: 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECK-RILTGHTGSVLCLQY----DERVII 187
Query: 178 SSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSD 237
+ + D+ V++WD +TG+ T+ H V + + + +++ S D + VW++ +D
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 238 I 238
I
Sbjct: 246 I 246
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 149 ECGLHRLS-------GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA 201
CG H L KGV + Q +VS +D +KIWD +T +C + +
Sbjct: 117 RCGRHSLQRIHCRSETSKGV-----YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG 171
Query: 202 HLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
H V +C+ ++ +I+GS+D+ ++VW+V
Sbjct: 172 HTGSV--LCLQYDERVIITGSSDSTVRVWDV 200
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 128/300 (42%), Gaps = 19/300 (6%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L+GHG ++ C + D + I SS D ++ +W + + V T VM ++ G
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCT-WVMACAYAPSG 118
Query: 418 CHIFTCSTDQTLAVWDL--EKGQRI----KKMKGHSTFVNSCDPVRRG-QLLIASGSDDC 470
C I D +V+ L +K + + K + H+ ++++C Q+L ASG D
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG--DG 176
Query: 471 TVKVWDPRKKNQAVSMNN---TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
T +WD S + +A ++T ++GG D +WD+R+ VQ
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587
H V + P G S + D T R++D+R +R V + S F + +
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA----DREVAIYSKESIIFGASSVD- 291
Query: 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+S+SG + AG D + +WD L GH V+ ++ P S S D T+
Sbjct: 292 -FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 51/245 (20%)
Query: 365 IFCSKYHPDGQYIASSGYDRQIFIWSV-YGECENIGV----MSGHTGAVMDLKFSTDGCH 419
+ Y P G IA G D + ++ + + + EN+ ++ HT + F+
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ 168
Query: 420 IFTCSTDQTLAVWDLEKGQRIKKMKGH---------------STFVNS-CDP------VR 457
I T S D T A+WD+E GQ ++ GH +TFV+ CD +R
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 458 RGQLL---------------------IASGSDDCTVKVWDPRKKNQAVSMNN---TYQVT 493
GQ + ASGSDD T +++D R + + + +
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGAS 288
Query: 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN 553
SV F+ + + G D I +WD+ S V L GH + V+ L +SPDG+ S + D+
Sbjct: 289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDH 348
Query: 554 TVRIW 558
T+R+W
Sbjct: 349 TLRVW 353
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 131/319 (41%), Gaps = 31/319 (9%)
Query: 925 GSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNV 984
G+ L + + R ++ ++DG++++ D + + +V M
Sbjct: 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWD----------SFTTNKEHAVTMPCTWVMACA 113
Query: 985 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044
Y P + GG D ++ L ++ ++++ K +++ HT L
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTF--------DKNENMAAKKKSVAM-HTNYLSA----- 159
Query: 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSG 1102
C+ + D ++L S D T ++ +++ + S +GH VL LD++ T +G
Sbjct: 160 CSFTNSDMQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162
D+ VW + G C ++ HE V V + P F + S D + +D +R V +
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAI 277
Query: 1163 HFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1222
+ S+ S+D S L+ G D T+ VW + G L HE+ V+ +
Sbjct: 278 YSKESII---FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRV 334
Query: 1223 VPKTHYFFTTSKDGRVKQW 1241
P F + S D ++ W
Sbjct: 335 SPDGTAFCSGSWDHTLRVW 353
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 22/220 (10%)
Query: 441 KKMKGHSTFV---NSCDPVRRGQLLIASGSDDCTVKVWDP--RKKNQAVSMNNTYQVTSV 495
+ +KGH V + C RR I S S D V VWD K AV+M T+ V +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRR----IVSSSQDGKVIVWDSFTTNKEHAVTMPCTW-VMAC 112
Query: 496 AFNDTAECVLTGGIDNDIKMW----DLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSN 549
A+ + + GG+DN ++ D N +K + H++ ++ S + IL+
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
+ D T +WD+ E + S H H + L A S +G +G DK +WD
Sbjct: 173 SGDGTCALWDV------ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 610 TTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
+ + H VN V+++P S S D T L
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 22/226 (9%)
Query: 1208 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFN---PNVYLPL 1262
++L H + V + + ++S+DG+V WD+ N E VT+ Y P
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 1263 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322
+ GG D ++ L ++ ++++ K +++ HT L C+
Sbjct: 118 GCAIACGGLDNKCSVYPLTF--------DKNENMAAKKKSVAM-HTNYLSA-----CSFT 163
Query: 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTV 1380
+ D ++L S D T ++ +++ + S +GH VL LD++ T +G D+
Sbjct: 164 NSDMQILTASG-DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKA 222
Query: 1381 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
VW + G C ++ HE V V + P F + S D + +D
Sbjct: 223 MVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 122/326 (37%), Gaps = 48/326 (14%)
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA--DNFERIVTLHFFISLYGHKLPV 1175
++L H + V + + ++S+DG+V WD+ N E VT+ V
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC--------TWV 109
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH------KSLLAHEDSVTGVTFVPKTHYF 1229
++ + IA G D V+ L + KS+ H + ++ +F
Sbjct: 110 MACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQI 169
Query: 1230 FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ-------VVTGGGDKSVKLWQLEL 1282
T S DG WD ++ + + + H + L L + V+GG DK +W +
Sbjct: 170 LTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-- 227
Query: 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFF 1342
RS + + T E V R P A D T +++
Sbjct: 228 ---------------RSGQCVQAFETH----ESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 1343 LDTFKFFISLYGHKLPVL---SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1399
L + +++Y + + S+D S L+ G D T+ VW + G L HE+
Sbjct: 269 LRADRE-VAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327
Query: 1400 SVTGVTFVPKTHYFFTTSKDGRVKQW 1425
V+ + P F + S D ++ W
Sbjct: 328 RVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 119/319 (37%), Gaps = 35/319 (10%)
Query: 1035 RTLKLE-EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP---VLSLDM 1090
RTLK +VLC D + + S D K+ D+F + +P V++
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDG--KVIVWDSFTTNKE-HAVTMPCTWVMACAY 114
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYGDCH------KSLLAHEDSVTGVTFVPKTHYFFTTSK 1144
+ IA G D V+ L + KS+ H + ++ +F T S
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 1145 DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST--LIATGSGDRTVKVWGLD 1202
DG WD ++ + + + H GH VL LD++ T +G D+ VW +
Sbjct: 175 DGTCALWDVESGQLLQSFH------GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228
Query: 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPL 1262
G C ++ HE V V + P F + S D + +D L + V +
Sbjct: 229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD---------LRADREVAIYS 279
Query: 1263 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322
+ ++ G L L + + DV + +V L E +V RV
Sbjct: 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH-----ENRVSTLRV 334
Query: 1323 SPDSKLLAVSLLDTTVKIF 1341
SPD D T++++
Sbjct: 335 SPDGTAFCSGSWDHTLRVW 353
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 14/213 (6%)
Query: 37 RFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
R +++ VI+WD K A+ +P C +P+ +
Sbjct: 78 RIVSSSQDGKVIVWDS--------FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNK 129
Query: 97 GSLKTFSLDTTDVIS----TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
S+ + D + ++ + H + ++ + ++ T S D LWDV + L
Sbjct: 130 CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL 189
Query: 153 HRLSGHKGVITDIRFM-SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV 211
GH + + S+ G+ FV S D +WD +G C + H ++V V
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFV-SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 212 MREDSYLISGSNDAELKVWNVRDRSDIDTEDKD 244
SGS+DA +++++R ++ K+
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKE 281
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT--GAVMDLK 412
+ E H ++ +Y+P G AS D ++ + + E + + S + +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE-VAIYSKESIIFGASSVD 291
Query: 413 FSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTV 472
FS G +F D T+ VWD+ KG R+ + GH V++ G SGS D T+
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAF-CSGSWDHTL 350
Query: 473 KVW 475
+VW
Sbjct: 351 RVW 353
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 8/201 (3%)
Query: 30 TLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQ 89
+ N + + L +WD+ + G + L L L+P+ +
Sbjct: 161 SFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCL--------DLAPSETGNT 212
Query: 90 LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE 149
+ + + + + F H+S + ++Y P G A+GS D L+D+ A+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGV 209
+ S + + + D + +WD G + H V +
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Query: 210 CVMREDSYLISGSNDAELKVW 230
V + + SGS D L+VW
Sbjct: 333 RVSPDGTAFCSGSWDHTLRVW 353
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 29/230 (12%)
Query: 357 LLEGHGGEI------FCSKYHPDGQYIASSGYDRQIFIWSVYGECEN--IGV----MSGH 404
+LEGH + F K + D + S D+ + IW +Y E +N G+ ++GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 405 TGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIA 464
V DL S + C + S D+TL +WDL G K+ GH + V S + +++
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 465 SGSDDCTVKVWDPR---KKNQAVSMNNTYQVTSVAFNDT----------AECVLTGGIDN 511
+G++ +K+W+ K + A N++ V+ V ++ A + G D
Sbjct: 136 AGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194
Query: 512 DIKMWDLRTNSVVQ-KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+K+W+ TN ++ + H V LS+SP+G YI + D + IWDI
Sbjct: 195 RLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 40/227 (17%)
Query: 1093 DSTLIATGSGDRTVKVWGL-------DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1145
DS ++ +GS D+TV +W L +G HK+L H V+ + + + ++S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1146 GRVKQWD---ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ WD ++R V GH+ V S+ S D+ I + +R +K+W +
Sbjct: 98 KTLRLWDLRTGTTYKRFV---------GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI- 147
Query: 1203 YGDCHKSLLA---HEDSVTGVTFVPKTH----------YFFTTSKDGRVKQWDADNFERI 1249
G+C S H D V+ V + P YF + DGR+K W+ NF+
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIR 206
Query: 1250 VTLHFNPNVYLPLQIQ-----VVTGGGDKSVKLWQ-LELVSVNREAD 1290
T + + L I + TGG DK + +W L L RE D
Sbjct: 207 YTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD 253
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 112/263 (42%), Gaps = 38/263 (14%)
Query: 399 GVMSGHTGAVMDL------KFSTDGCHIFTCSTDQTLAVWDLEKGQRI-------KKMKG 445
G++ GH+ V + K + D + + S D+T+ +W L + ++ K + G
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-MNNTYQVTSVAFNDTAECV 504
H+ FV+ + I+S S D T+++WD R + + +V SVAF+ +
Sbjct: 75 HNHFVSDLALSQENCFAISS-SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 505 LTGGIDNDIKMWDLRTN---SVVQKLRGHSDTVTGLSLSPD----------GSYILSNAM 551
L+ G + +IK+W++ S +K HSD V+ + SP Y S
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW 192
Query: 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611
D +++W+ + H E N+ + S +G Y+ G DK + IWD
Sbjct: 193 DGRLKVWNTNFQIR-----YTFKAH----ESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
Query: 612 TRRIAYKLPGHNGSVNDVQFHPK 634
+ ++N + F+PK
Sbjct: 244 NLTYPQREFDAGSTINQIAFNPK 266
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 32/231 (13%)
Query: 443 MKGHSTFVNS-----CDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---------AVSMNN 488
++GHS +V S ++ SGS D TV +W ++ Q A++ +N
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 489 TYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS 548
+ V+ +A + ++ D +++WDLRT + ++ GH V ++ SPD ILS
Sbjct: 77 HF-VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 549 NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE--------KNLLRCAWSVSGL--YVTA 598
+ +++W+I GE K S + N +++ A V Y +
Sbjct: 136 AGAEREIKLWNIL----GE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFAS 189
Query: 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
D + +W+T +I Y H +VN + P I + DK + +
Sbjct: 190 VGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLI 239
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 96/216 (44%), Gaps = 15/216 (6%)
Query: 28 FVTLKNQEGRFLATGASED-VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHD 86
F +N++ L +G+ + V+IW L E+ G H+AL G H V L+ + +
Sbjct: 31 FSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYF-GIPHKALT--GHNHFVSDLALSQE 87
Query: 87 SSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV 146
+ + + +L+ + L T F GH+S + + + P ++ + + +I LW++
Sbjct: 88 NCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Query: 147 VAECGLHRL--SGHKGVITDIRFMS--------QPGHHFVVSSAKDTFVKIWDADTGDCF 196
+ EC H ++ +R+ QP + S D +K+W+ + +
Sbjct: 148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 197 KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
T AH + V + + Y+ +G D +L +W++
Sbjct: 208 -TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 64/120 (53%), Gaps = 9/120 (7%)
Query: 132 LATGSKDTDIVLWDVVAE-----CGL-HR-LSGHKGVITDIRFMSQPGHHFVVSSAKDTF 184
L +GS+D +++W + E G+ H+ L+GH ++D+ + + F +SS+ D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--NCFAISSSWDKT 99
Query: 185 VKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKD 244
+++WD TG +K H +EV+ V ++ ++S + E+K+WN+ + +K+
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKE 159
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 40/258 (15%)
Query: 1051 DSKLLAVSLLDTTVKIFFL---DTFKFF----ISLYGHKLPVLSLDMSYDSTLIATGSGD 1103
DS +L D TV I+ L + +F +L GH V L +S ++ + S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW-----------D 1152
+T+++W L G +K + H+ V V F P + + +K W +
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAE 157
Query: 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1212
+N V+ + + V + A+ D +KVW ++ + A
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPF-----APYFASVGWDGRLKVWNTNF-QIRYTFKA 211
Query: 1213 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF----------ERIVTLHFNPNVYLPL 1262
HE +V ++ P Y T KD ++ WD N I + FNP
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNP------ 265
Query: 1263 QIQVVTGGGDKSVKLWQL 1280
++Q V G D+ VK++ L
Sbjct: 266 KLQWVAVGTDQGVKIFNL 283
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 105/259 (40%), Gaps = 37/259 (14%)
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE-EQVLCARVSP 1050
+++G DK+V +W+L +E+ HK L+ + L Q C +S
Sbjct: 42 LISGSRDKTVMIWKLY-------EEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS- 93
Query: 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
S D T++++ L T + GH+ V S+ S D+ I + +R +K+W
Sbjct: 94 -------SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 1111 LDYGDCHKSLLA---HEDSVTGVTFVPKTH----------YFFTTSKDGRVKQWDADNFE 1157
+ G+C S H D V+ V + P YF + DGR+K W+ NF+
Sbjct: 147 I-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQ 204
Query: 1158 RIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217
T H+ V L +S + IATG D+ + +W + + ++
Sbjct: 205 IRYTFK------AHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTI 258
Query: 1218 TGVTFVPKTHYFFTTSKDG 1236
+ F PK + + G
Sbjct: 259 NQIAFNPKLQWVAVGTDQG 277
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 109/255 (42%), Gaps = 32/255 (12%)
Query: 1183 DSTLIATGSGDRTVKVWGLD-------YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235
DS ++ +GS D+TV +W L +G HK+L H V+ + + + ++S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1236 GRVKQWD---ADNFERIV-------TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSV 1285
++ WD ++R V ++ F+P+ Q+++ G ++ +KLW +
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD-----NRQILSAGAEREIKLWNILGECK 152
Query: 1286 NREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT 1345
A++E + S V + ++ +K +V P + A D +K++ +
Sbjct: 153 FSSAEKE----NHSDWVSCVRYSPIMKS-----ANKVQPFAPYFASVGWDGRLKVWNTN- 202
Query: 1346 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1405
F+ + H+ V L +S + IATG D+ + +W + + ++ +
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 1406 FVPKTHYFFTTSKDG 1420
F PK + + G
Sbjct: 263 FNPKLQWVAVGTDQG 277
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 37/205 (18%)
Query: 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE-EQVLCARVSP 1324
+++G DK+V +W+L +E+ HK L+ + L Q C +S
Sbjct: 42 LISGSRDKTVMIWKLY-------EEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS- 93
Query: 1325 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1384
S D T++++ L T + GH+ V S+ S D+ I + +R +K+W
Sbjct: 94 -------SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Query: 1385 LDYGDCHKSLLA---HEDSVTGVTFVPKTH----------YFFTTSKDGRVKQWDADNFE 1431
+ G+C S H D V+ V + P YF + DGR+K W+ NF+
Sbjct: 147 I-LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQ 204
Query: 1432 RIVTLHICSCSLNSPMNSVHLNSCP 1456
T ++N HL+ P
Sbjct: 205 IRYTFKAHESNVN------HLSISP 223
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 1325 DSKLLAVSLLDTTVKIFFL---DTFKFF----ISLYGHKLPVLSLDMSYDSTLIATGSGD 1377
DS +L D TV I+ L + +F +L GH V L +S ++ + S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1378 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
+T+++W L G +K + H+ V V F P + + +K W+
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
D L + D+ G + H E++SVA PD Q+++ G ++ +KLW
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD----------NRQILSAGAEREIKLWN 146
Query: 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVK 1065
+ A++E + S V + ++ +K +V P + A D +K
Sbjct: 147 ILGECKFSSAEKE----NHSDWVSCVRYSPIMK-----SANKVQPFAPYFASVGWDGRLK 197
Query: 1066 IFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1125
++ + F+ + H+ V L +S + IATG D+ + +W + +
Sbjct: 198 VWNTN-FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS 256
Query: 1126 SVTGVTFVPKTHYFFTTSKDG 1146
++ + F PK + + G
Sbjct: 257 TINQIAFNPKLQWVAVGTDQG 277
Score = 37.7 bits (86), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 1367 DSTLIATGSGDRTVKVWGL-------DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1419
DS ++ +GS D+TV +W L +G HK+L H V+ + + + ++S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 1420 GRVKQWD---ADNFERIV--TLHICSCSLNSPMNSVHLNSCPALEASNDIAELLMECLAT 1474
++ WD ++R V + S + SP N L++ E + +L EC +
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAF-SPDNRQILSA--GAEREIKLWNILGECKFS 154
Query: 1475 MKEYEVECKEMTAMGKPPPSLPPIMKALNVTSP 1507
E E ++ + PIMK+ N P
Sbjct: 155 SAEKENHSDWVSCV-----RYSPIMKSANKVQP 182
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 64/152 (42%), Gaps = 32/152 (21%)
Query: 883 GHHSEVRALAFSSDNLALVSACAS-QVKIWN---------------RPSLSCLRTIDTGS 926
GH SEV ++AFS DN ++SA A ++K+WN +SC+R
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMK 175
Query: 927 YALSV-CFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVY 985
A V F P VG DGRL + + +I AH + +++ P+
Sbjct: 176 SANKVQPFAP--YFASVGW-DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPN------- 224
Query: 986 LPLQIQVVTGGGDKSVKLWQ-LELVSVNREAD 1016
+ TGG DK + +W L L RE D
Sbjct: 225 ---GKYIATGGKDKKLLIWDILNLTYPQREFD 253
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
+G LK ++ + + TF H+S + + P G +ATG KD +++WD++
Sbjct: 193 DGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDIL 243
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH G + C ++ D Q + SSG D +W + + +GHTG VM L + D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDL 255
Query: 478 RKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
R + ++ N +TSV+F+ + +L G D + +WD L GH + V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWD 559
+ L ++ DG + + + D+ ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH +I+ + D + + S+ D ++ IW Y + + + VM ++ G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 418 CHIFTCSTDQTLAVWDL---EKGQRI-KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
++ D ++++L E R+ +++ GH+ +++ C + Q++ +SG D T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCA 167
Query: 474 VWD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+WD + +T V S++ ++G D K+WD+R Q GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+ + P+G+ + + D T R++D+R ++M+ N + ++S S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKS 281
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
G + AG D +WD A L GH+ V+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
R +L ++DG+L+I D + IP S + + A Y P V GG
Sbjct: 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA----------YAPSGNYVACGGL 117
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057
D ++ L+ N E HT L C R D++++
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCRFLDDNQIVTS 160
Query: 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117
S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W + G C
Sbjct: 161 SG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK---LP 1174
++ HE + + F P + F T S D + +D + ++T Y H
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICG 272
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ S+ S L+ G D VW D L H++ V+ + T S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 1235 DGRVKQWD 1242
D +K W+
Sbjct: 333 DSFLKIWN 340
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 9/186 (4%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459
+ GH + + + TD + + S D L +WD ++ + S++V +C G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 460 QLLIASGSDD-CTVKVWDPRKKNQAVS---MNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515
+ G D+ C++ R+ N VS +T ++ F D + V + G D +
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 168
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
WD+ T GH+ V LSL+PD +S A D + ++WD+R + C + +G
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM----CRQTFTG 224
Query: 576 HQHNFE 581
H+ +
Sbjct: 225 HESDIN 230
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
++L H + + + + + S+DG++ WD+ ++ + + Y P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321
V GG D ++ L+ N E HT L C R
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCR 150
Query: 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381
D++++ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K
Sbjct: 151 FLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435
+W + G C ++ HE + + F P + F T S D + +D + ++T
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+V LS D+ + S K + + TFTGH+S I I + P G+ ATGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDC 195
D L+D+ A+ L S H +I I +S ++ + D F +WDA D
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 19/213 (8%)
Query: 39 LATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L AS+D +IIWD K +P L C +P+ + +A +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPS--GNYVACGGLD 118
Query: 97 GSLKTFSLDTTD----VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
++L T + V GH ++ ++ +++ T S DT LWD+
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQT 177
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+GH G + + P VS A D K+WD G C +T H +++ +C
Sbjct: 178 TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
+ +GS+DA +++++R ++ T D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 131 RLATGSKDTDIVLWDVVAECGLHR----LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+A G D ++++ G R L+GH G ++ RF+ + +V+S+ DT
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCA 167
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+WD +TG T H +V + + + +SG+ DA K+W+VR+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y D ++ E V + L GH LS D I T SGD T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSR--ELAGHT-GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTLH- 1253
+W ++ G + H V ++ P T F + + D K WD + T H
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 1254 --FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
N + P TG D + +L+ L AD+E S + + +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLR-------ADQELMTYSHDNIICGITSVS-- 277
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDST 1369
S +LL D ++ D K + L GH V L ++ D
Sbjct: 278 ----------FSKSGRLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 1370 LIATGSGDRTVKVW 1383
+ATGS D +K+W
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 884 HHSEVRALAFSSDNLALVS-ACASQVKIWNRPSLSCLRTIDTG--SYALSVCFVPGDRHV 940
H +V +L+ + D VS AC + K+W+ C +T TG S ++CF P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAF 241
Query: 941 LVGTKDGRLLIVDIGAGEIL 960
G+ D + D+ A + L
Sbjct: 242 ATGSDDATCRLFDLRADQEL 261
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH G + C ++ D Q + SSG D +W + + +GHTG VM L + D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDL 255
Query: 478 RKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
R + ++ N +TSV+F+ + +L G D + +WD L GH + V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWD 559
+ L ++ DG + + + D+ ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH +I+ + D + + S+ D ++ IW Y + + + VM ++ G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 418 CHIFTCSTDQTLAVWDL---EKGQRI-KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
++ D ++++L E R+ +++ GH+ +++ C + Q++ +SG D T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCA 167
Query: 474 VWD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+WD + +T V S++ ++G D K+WD+R Q GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+ + P+G+ + + D T R++D+R ++M+ N + ++S S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKS 281
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
G + AG D +WD A L GH+ V+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
R ++ ++DG+L+I D + IP S + + A Y P V GG
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA----------YAPSGNYVACGGL 117
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057
D ++ L+ N E HT L C R D++++
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCRFLDDNQIVTS 160
Query: 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117
S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W + G C
Sbjct: 161 SG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK---LP 1174
++ HE + + F P + F T S D + +D + ++T Y H
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICG 272
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ S+ S L+ G D VW D L H++ V+ + T S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 1235 DGRVKQWD 1242
D +K W+
Sbjct: 333 DSFLKIWN 340
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 48/327 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRH 939
+GH +++ A+ + +D+ LVSA ++ IW+ + + + I S+ ++ + P +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 940 VLVGTKDGRLLIVDI----GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG 995
V G D I ++ G + ++ H+ L L D Q+VT
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------QIVTS 160
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055
GD + LW +E T D V+SL ++PD++L
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGD------VMSL---------------SLAPDTRLF 199
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
D + K++ + + GH+ + ++ + ATGS D T +++ L D
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RAD 258
Query: 1116 CHKSLLAHEDSVTGVT---FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK 1172
+H++ + G+T F D WDA +R L GH
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA------GHD 312
Query: 1173 LPVLSLDMSYDSTLIATGSGDRTVKVW 1199
V L ++ D +ATGS D +K+W
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
++L H + + + + + S+DG++ WD+ ++ + + Y P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321
V GG D ++ L+ N E HT L C R
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCR 150
Query: 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381
D++++ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K
Sbjct: 151 FLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435
+W + G C ++ HE + + F P + F T S D + +D + ++T
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+V LS D+ + S K + + TFTGH+S I I + P G+ ATGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDC 195
D L+D+ A+ L S H +I I +S ++ + D F +WDA D
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 19/213 (8%)
Query: 39 LATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L AS+D +IIWD K +P L C +P+ + +A +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPS--GNYVACGGLD 118
Query: 97 GSLKTFSLDTTD----VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
++L T + V GH ++ ++ +++ T S DT LWD+
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQT 177
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+GH G + + P VS A D K+WD G C +T H +++ +C
Sbjct: 178 TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
+ +GS+DA +++++R ++ T D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 131 RLATGSKDTDIVLWDVVAECGLHR----LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+A G D ++++ G R L+GH G ++ RF+ + +V+S+ DT
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCA 167
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+WD +TG T H +V + + + +SG+ DA K+W+VR+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y D ++ E V + L GH LS D I T SGD T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSR--ELAGHT-GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTLH- 1253
+W ++ G + H V ++ P T F + + D K WD + T H
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 1254 --FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
N + P TG D + +L+ L AD+E S + + +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLR-------ADQELMTYSHDNIICGITSVS-- 277
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDST 1369
S +LL D ++ D K + L GH V L ++ D
Sbjct: 278 ----------FSKSGRLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 1370 LIATGSGDRTVKVW 1383
+ATGS D +K+W
Sbjct: 326 AVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH G + C ++ D Q + SSG D +W + + +GHTG VM L + D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDL 255
Query: 478 RKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
R + ++ N +TSV+F+ + +L G D + +WD L GH + V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWD 559
+ L ++ DG + + + D+ ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH +I+ + D + + S+ D ++ IW Y + + + VM ++ G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 418 CHIFTCSTDQTLAVWDL---EKGQRI-KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
++ D ++++L E R+ +++ GH+ +++ C + Q++ +SG D T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCA 167
Query: 474 VWD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+WD + +T V S++ ++G D K+WD+R Q GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+ + P+G+ + + D T R++D+R ++M+ N + ++S S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKS 281
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
G + AG D +WD A L GH+ V+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
R +L ++DG+L+I D + IP S + + A Y P V GG
Sbjct: 68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA----------YAPSGNYVACGGL 117
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057
D ++ L+ N E HT L C R D++++
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCRFLDDNQIVTS 160
Query: 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117
S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W + G C
Sbjct: 161 SG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK---LP 1174
++ HE + + F P + F T S D + +D + ++T Y H
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICG 272
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ S+ S L+ G D VW D L H++ V+ + T S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 1235 DGRVKQWD 1242
D +K W+
Sbjct: 333 DSFLKIWN 340
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
++L H + + + + + S+DG++ WD+ ++ + + Y P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321
V GG D ++ L+ N E HT L C R
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCR 150
Query: 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381
D++++ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K
Sbjct: 151 FLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435
+W + G C ++ HE + + F P + F T S D + +D + ++T
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+V LS D+ + S K + + TFTGH+S I I + P G+ ATGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDC 195
D L+D+ A+ L S H +I I +S ++ + D F +WDA D
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 19/213 (8%)
Query: 39 LATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L AS+D +IIWD K +P L C +P+ + +A +
Sbjct: 69 LLLSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPS--GNYVACGGLD 118
Query: 97 GSLKTFSLDTTD----VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
++L T + V GH ++ ++ +++ T S DT LWD+
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQT 177
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+GH G + + P VS A D K+WD G C +T H +++ +C
Sbjct: 178 TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
+ +GS+DA +++++R ++ T D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 131 RLATGSKDTDIVLWDVVAECGLHR----LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+A G D ++++ G R L+GH G ++ RF+ + +V+S+ DT
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCA 167
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+WD +TG T H +V + + + +SG+ DA K+W+VR+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y D ++ E V + L GH LS D I T SGD T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSR--ELAGHT-GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTLH- 1253
+W ++ G + H V ++ P T F + + D K WD + T H
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 1254 --FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
N + P TG D + +L+ L AD+E S + + +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLR-------ADQELMTYSHDNIICGITSVS-- 277
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDST 1369
S +LL D ++ D K + L GH V L ++ D
Sbjct: 278 ----------FSKSGRLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 1370 LIATGSGDRTVKVW 1383
+ATGS D +K+W
Sbjct: 326 AVATGSWDSFLKIW 339
Score = 31.6 bits (70), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 884 HHSEVRALAFSSDNLALVS-ACASQVKIWNRPSLSCLRTIDTG--SYALSVCFVPGDRHV 940
H +V +L+ + D VS AC + K+W+ C +T TG S ++CF P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAF 241
Query: 941 LVGTKDGRLLIVDIGAGEIL 960
G+ D + D+ A + L
Sbjct: 242 ATGSDDATCRLFDLRADQEL 261
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH G + C ++ D Q + SSG D +W + + +GHTG VM L + D
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 196
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDL 255
Query: 478 RKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
R + ++ N +TSV+F+ + +L G D + +WD L GH + V
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 315
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWD 559
+ L ++ DG + + + D+ ++IW+
Sbjct: 316 SCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH +I+ + D + + S+ D ++ IW Y + + + VM ++ G
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 418 CHIFTCSTDQTLAVWDL---EKGQRI-KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
++ D ++++L E R+ +++ GH+ +++ C + Q++ +SG D T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCA 167
Query: 474 VWD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+WD + +T V S++ ++G D K+WD+R Q GH
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+ + P+G+ + + D T R++D+R ++M+ N + ++S S
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKS 281
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
G + AG D +WD A L GH+ V+
Sbjct: 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
R ++ ++DG+L+I D + IP S + + A Y P V GG
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA----------YAPSGNYVACGGL 117
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057
D ++ L+ N E HT L C R D++++
Sbjct: 118 DNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCRFLDDNQIVTS 160
Query: 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117
S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W + G C
Sbjct: 161 SG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK---LP 1174
++ HE + + F P + F T S D + +D + ++T Y H
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICG 272
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ S+ S L+ G D VW D L H++ V+ + T S
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 1235 DGRVKQWD 1242
D +K W+
Sbjct: 333 DSFLKIWN 340
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 48/327 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRH 939
+GH +++ A+ + +D+ LVSA ++ IW+ + + + I S+ ++ + P +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 940 VLVGTKDGRLLIVDI----GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG 995
V G D I ++ G + ++ H+ L L D Q+VT
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------QIVTS 160
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055
GD + LW +E T D V+SL ++PD++L
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGD------VMSL---------------SLAPDTRLF 199
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
D + K++ + + GH+ + ++ + ATGS D T +++ L D
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RAD 258
Query: 1116 CHKSLLAHEDSVTGVT---FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK 1172
+H++ + G+T F D WDA +R L GH
Sbjct: 259 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA------GHD 312
Query: 1173 LPVLSLDMSYDSTLIATGSGDRTVKVW 1199
V L ++ D +ATGS D +K+W
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
++L H + + + + + S+DG++ WD+ ++ + + Y P
Sbjct: 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321
V GG D ++ L+ N E HT L C R
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCR 150
Query: 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381
D++++ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K
Sbjct: 151 FLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435
+W + G C ++ HE + + F P + F T S D + +D + ++T
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+V LS D+ + S K + + TFTGH+S I I + P G+ ATGS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDC 195
D L+D+ A+ L S H +I I +S ++ + D F +WDA D
Sbjct: 246 DDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 305 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 19/213 (8%)
Query: 39 LATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L AS+D +IIWD K +P L C +P+ + +A +
Sbjct: 69 LLVSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPS--GNYVACGGLD 118
Query: 97 GSLKTFSLDTTD----VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
++L T + V GH ++ ++ +++ T S DT LWD+
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQT 177
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+GH G + + P VS A D K+WD G C +T H +++ +C
Sbjct: 178 TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
+ +GS+DA +++++R ++ T D
Sbjct: 236 PNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 131 RLATGSKDTDIVLWDVVAECGLHR----LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+A G D ++++ G R L+GH G ++ RF+ + +V+S+ DT
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCA 167
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+WD +TG T H +V + + + +SG+ DA K+W+VR+
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y D ++ E V + L GH LS D I T SGD T
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSR--ELAGHT-GYLSCCRFLDDNQIVTSSGDTTC 166
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTLH- 1253
+W ++ G + H V ++ P T F + + D K WD + T H
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 1254 --FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
N + P TG D + +L+ L AD+E S + + +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLR-------ADQELMTYSHDNIICGITSVS-- 277
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDST 1369
S +LL D ++ D K + L GH V L ++ D
Sbjct: 278 ----------FSKSGRLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGM 325
Query: 1370 LIATGSGDRTVKVW 1383
+ATGS D +K+W
Sbjct: 326 AVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH G + C ++ D Q + SSG D +W + + +GHTG VM L + D
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDT 207
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D + +WD+ +G + GH + +N+ G A+GSDD T +++D
Sbjct: 208 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF-ATGSDDATCRLFDL 266
Query: 478 RKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
R + ++ N +TSV+F+ + +L G D + +WD L GH + V
Sbjct: 267 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRV 326
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWD 559
+ L ++ DG + + + D+ ++IW+
Sbjct: 327 SCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 120/275 (43%), Gaps = 14/275 (5%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
L GH +I+ + D + + S+ D ++ IW Y + + + VM ++ G
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 418 CHIFTCSTDQTLAVWDL---EKGQRI-KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVK 473
++ D ++++L E R+ +++ GH+ +++ C + Q++ +SG D T
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG--DTTCA 178
Query: 474 VWD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
+WD + +T V S++ ++G D K+WD+R Q GH
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592
+ + P+G+ + + D T R++D+R ++M+ N + ++S S
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSVSFSKS 292
Query: 593 GLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
G + AG D +WD A L GH+ V+
Sbjct: 293 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 327
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 38/308 (12%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
R ++ ++DG+L+I D + IP S + + A Y P V GG
Sbjct: 79 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA----------YAPSGNYVACGGL 128
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057
D ++ L+ N E HT L C R D++++
Sbjct: 129 DNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCRFLDDNQIVTS 171
Query: 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117
S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K+W + G C
Sbjct: 172 SG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK---LP 1174
++ HE + + F P + F T S D + +D + ++T Y H
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT-------YSHDNIICG 283
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+ S+ S L+ G D VW D L H++ V+ + T S
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 1235 DGRVKQWD 1242
D +K W+
Sbjct: 344 DSFLKIWN 351
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/327 (22%), Positives = 129/327 (39%), Gaps = 48/327 (14%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRH 939
+GH +++ A+ + +D+ LVSA ++ IW+ + + + I S+ ++ + P +
Sbjct: 63 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 122
Query: 940 VLVGTKDGRLLIVDI----GAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTG 995
V G D I ++ G + ++ H+ L L D Q+VT
Sbjct: 123 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-----------QIVTS 171
Query: 996 GGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055
GD + LW +E T D V+SL ++PD++L
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGD------VMSL---------------SLAPDTRLF 210
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
D + K++ + + GH+ + ++ + ATGS D T +++ L D
Sbjct: 211 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RAD 269
Query: 1116 CHKSLLAHEDSVTGVT---FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK 1172
+H++ + G+T F D WDA +R L GH
Sbjct: 270 QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA------GHD 323
Query: 1173 LPVLSLDMSYDSTLIATGSGDRTVKVW 1199
V L ++ D +ATGS D +K+W
Sbjct: 324 NRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 23/234 (9%)
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN-----VYLP 1261
++L H + + + + + S+DG++ WD+ ++ + + Y P
Sbjct: 59 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 118
Query: 1262 LQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321
V GG D ++ L+ N E HT L C R
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-----------HTGYLS------CCR 161
Query: 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1381
D++++ S DTT ++ ++T + + GH V+SL ++ D+ L +G+ D + K
Sbjct: 162 FLDDNQIVTSSG-DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 1382 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435
+W + G C ++ HE + + F P + F T S D + +D + ++T
Sbjct: 221 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 274
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+V LS D+ + S K + + TFTGH+S I I + P G+ ATGS
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDC 195
D L+D+ A+ L S H +I I +S ++ + D F +WDA D
Sbjct: 257 DDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR 315
Query: 196 FKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
+A H V + V + + +GS D+ LK+WN
Sbjct: 316 AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 19/213 (8%)
Query: 39 LATGASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN 96
L AS+D +IIWD K +P L C +P+ + +A +
Sbjct: 80 LLVSASQDGKLIIWDSYTTNKVHAIP--------LRSSWVMTCAYAPS--GNYVACGGLD 129
Query: 97 GSLKTFSLDTTD----VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL 152
++L T + V GH ++ ++ +++ T S DT LWD+
Sbjct: 130 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQT 188
Query: 153 HRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM 212
+GH G + + P VS A D K+WD G C +T H +++ +C
Sbjct: 189 TTFTGHTGDVMSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 246
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
+ +GS+DA +++++R ++ T D
Sbjct: 247 PNGNAFATGSDDATCRLFDLRADQELMTYSHDN 279
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%)
Query: 71 LPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGH 130
L G ++ + DS L A +G L + TT+ + S + Y P G+
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 131 RLATGSKDTDIVLWDVVAECGLHR----LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186
+A G D ++++ G R L+GH G ++ RF+ + +V+S+ DT
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCA 178
Query: 187 IWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
+WD +TG T H +V + + + +SG+ DA K+W+VR+
Sbjct: 179 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 112/314 (35%), Gaps = 31/314 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH + ++ DS L+ + S D + +W + ++ V + P
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y D ++ E V + L GH LS D I T SGD T
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSR--ELAGHT-GYLSCCRFLDDNQIVTSSGDTTC 177
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTLH- 1253
+W ++ G + H V ++ P T F + + D K WD + T H
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 1254 --FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
N + P TG D + +L+ L AD+E S + + +
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDLR-------ADQELMTYSHDNIICGITSVS-- 288
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDST 1369
S +LL D ++ D K + L GH V L ++ D
Sbjct: 289 ----------FSKSGRLLLAGYDDFNCNVW--DALKADRAGVLAGHDNRVSCLGVTDDGM 336
Query: 1370 LIATGSGDRTVKVW 1383
+ATGS D +K+W
Sbjct: 337 AVATGSWDSFLKIW 350
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 111/237 (46%), Gaps = 24/237 (10%)
Query: 344 DVGRTSNLFAPIML---------LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSV 391
D+G T NL+ M+ L+GH G +I + PD I S+ D+ I +W +
Sbjct: 12 DLG-TENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPD--MILSASRDKTIIMWKL 68
Query: 392 YGECENIGV----MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS 447
+ N G+ + GH+ V D+ S+DG + S D TL +WDL G ++ GH+
Sbjct: 69 TRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT 128
Query: 448 TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK--KNQAVSMNNTYQVTSVAF--NDTAEC 503
V S I SGS D T+K+W+ K +++ V+ V F N +
Sbjct: 129 KDVLSV-AFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+++ G D +K+W+L + GH+ + +++SPDGS S D +WD+
Sbjct: 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 244
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH 419
GH ++ + D + I S D+ I +W+ G C+ H+ V ++FS + +
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 420 --IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
I +C D+ + VW+L + GH+ ++N+ G L ASG D +WD
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDL 244
Query: 478 RKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLR------- 528
+ +++ + ++ F N C TG IK+WDL +V +L+
Sbjct: 245 NEGKHLYTLDGGDIINALCFSPNRYWLCAATG---PSIKIWDLEGKIIVDELKQEVISTS 301
Query: 529 --GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
T L+ S DG + + DN VR+W +
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 11/213 (5%)
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN------QAVSMNNTYQVTSVA 496
+KGH+ +V + +I S S D T+ +W + Q +++ V+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 497 FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556
+ + L+G D +++WDL T + ++ GH+ V ++ S D I+S + D T++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 557 IWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616
+W+ C + H+ + +R + + S + + DK V +W+ ++
Sbjct: 154 LWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 617 YKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
GH G +N V P + S D L
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 108/274 (39%), Gaps = 41/274 (14%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
+ L G+ DG L + D+ G H++++ SVA D Q+V+G
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR----------QIVSGSR 148
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK--LL 1055
DK++KLW V DE SH E V C R SP+S ++
Sbjct: 149 DKTIKLWNTLGVCKYTVQDE-------SH-------------SEWVSCVRFSPNSSNPII 188
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
D VK++ L K + GH + ++ +S D +L A+G D +W L+ G
Sbjct: 189 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF---FISLYGHK 1172
H L D + + F P Y+ + +K WD + +I+ IS
Sbjct: 249 -HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEG--KIIVDELKQEVISTSSKA 304
Query: 1173 LP--VLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
P SL S D + G D V+VW + G
Sbjct: 305 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 121/310 (39%), Gaps = 41/310 (13%)
Query: 1096 LIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
+I + S D+T+ +W L +YG ++L H V+ V + + S DG ++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
WD T F+ GH VLS+ S D+ I +GS D+T+K+W G C ++
Sbjct: 113 WD---LTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTV 165
Query: 1211 L--AHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL------ 1260
+H + V+ V F P + + D VK W+ N ++ T H YL
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVS 224
Query: 1261 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320
P +GG D LW L N T D +++ LCA
Sbjct: 225 PDGSLCASGGKDGQAMLWDL-----NEGKHLYTLDGG------DIINALCFSPNRYWLCA 273
Query: 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSYDSTLIATGSGDR 1378
P ++ + D KI + + IS P SL S D + G D
Sbjct: 274 ATGP-----SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 328
Query: 1379 TVKVWGLDYG 1388
V+VW + G
Sbjct: 329 LVRVWQVTIG 338
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 22/227 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH V + +S D +GS D T+++W L G + + H V V F
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 140
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST--LIATGSGDR 1194
+ S+D +K W+ + + + H V + S +S+ +I + D+
Sbjct: 141 RQIVSGSRDKTIKLWNT-----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195
Query: 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH- 1253
VKVW L + + H + VT P + KDG+ WD + + + TL
Sbjct: 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Query: 1254 --------FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292
F+PN Y + TG S+K+W LE + E +E
Sbjct: 256 GDIINALCFSPNRYW---LCAATG---PSIKIWDLEGKIIVDELKQE 296
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 13/201 (6%)
Query: 1048 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1107
+S D + D T++++ L T GH VLS+ S D+ I +GS D+T+K
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 1108 VWGLDYGDCHKSLL--AHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLH 1163
+W G C ++ +H + V+ V F P + + D VK W+ N ++ T H
Sbjct: 154 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNH 211
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223
GH + ++ +S D +L A+G D +W L+ G H L D + + F
Sbjct: 212 I-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTLDGGDIINALCFS 265
Query: 1224 PKTHYFFTTSKDGRVKQWDAD 1244
P Y+ + +K WD +
Sbjct: 266 PN-RYWLCAATGPSIKIWDLE 285
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 6/206 (2%)
Query: 38 FLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNG 97
L+ + +I+W L E +P L G H V + + D +G
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 98 SLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH-RLS 156
+L+ + L T F GH + + + ++ +GS+D I LW+ + C +
Sbjct: 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168
Query: 157 GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS 216
H ++ +RF + +VS D VK+W+ H + V V + S
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 217 YLISGSNDAELKVWNVRDRSDIDTED 242
SG D + +W++ + + T D
Sbjct: 229 LCASGGKDGQAMLWDLNEGKHLYTLD 254
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 359 EGHGGEIFCSKYHPDGQ--YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416
E H + C ++ P+ I S G+D+ + +W++ C+ GHTG + + S D
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPD 226
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
G + D +WDL +G+ + + G C R L A+G ++K+WD
Sbjct: 227 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP---SIKIWD 283
Query: 477 PRK-------KNQAVSMNNTY---QVTSVAFNDTAECVLTGGIDNDIKMWDL 518
K + +S ++ Q TS+A++ + + G DN +++W +
Sbjct: 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE---CGLHR--LSGHKGVITDI 165
T GH +T I P + + S+D I++W + + G+ + L GH ++D+
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
S F +S + D +++WD TG + H +V V ++ ++SGS D
Sbjct: 93 VISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 226 ELKVWN 231
+K+WN
Sbjct: 151 TIKLWN 156
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 116/325 (35%), Gaps = 88/325 (27%)
Query: 1186 LIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
+I + S D+T+ +W L +YG ++L H V+ V + + S DG ++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 1241 WD----------ADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREAD 1290
WD + + ++++ F+ + Q+V+G DK++KLW V D
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSD-----NRQIVSGSRDKTIKLWNTLGVCKYTVQD 167
Query: 1291 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1350
E SH E V C R SP+S
Sbjct: 168 E-------SH-------------SEWVSCVRFSPNSS----------------------- 184
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
+ +I + D+ VKVW L + + H + VT P
Sbjct: 185 -----------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 1411 HYFFTTSKDGRVKQWDADNFERIVTL---HICSCSLNSPMNSVHLNSCPALEASNDIAEL 1467
+ KDG+ WD + + + TL I + SP N L C A S I +L
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRYWL--CAATGPSIKIWDL 284
Query: 1468 LMECLATMKEYEVECKEMTAMGKPP 1492
E + E + E ++ +PP
Sbjct: 285 --EGKIIVDELKQEVISTSSKAEPP 307
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + + + +K ++L + + GH + + P G A+G KD
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD 191
+LWD+ L+ L G +I + F P +++ ++ + +KIWD +
Sbjct: 238 QAMLWDLNEGKHLYTLDGGD-IINALCF--SPNRYWLCAATGPS-IKIWDLE 285
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVC---FVPGDR 938
GH +V ++AFSSDN +VS + +K+WN + C T+ S++ V F P
Sbjct: 126 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS 184
Query: 939 HVLVGT--KDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
+ ++ + D + + ++ ++ + H+ L +V + PD +GG
Sbjct: 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS----------LCASGG 234
Query: 997 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056
D LW L N T D +++ LCA P +
Sbjct: 235 KDGQAMLWDL-----NEGKHLYTLDGG------DIINALCFSPNRYWLCAATGP-----S 278
Query: 1057 VSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114
+ + D KI + + IS P SL S D + G D V+VW + G
Sbjct: 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 358 LEGHGG---EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMD 410
L+GH G +I + PD I S+ D+ I +W + + N G+ + GH+ V D
Sbjct: 11 LKGHNGWVTQIATTPQFPD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 411 LKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
+ S+DG + S D TL +WDL G ++ GH+ V S I SGS D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQIVSGSRDK 127
Query: 471 TVKVWDPRK--KNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQK 526
T+K+W+ K +++ V+ V F N + +++ G D +K+W+L +
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
GH+ + +++SPDGS S D +WD+
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDL 221
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 17/214 (7%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCH 419
GH ++ + D + I S D+ I +W+ G C+ H+ V ++FS + +
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 420 --IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
I +C D+ + VW+L + GH+ ++N+ G L ASG D +WD
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL-CASGGKDGQAMLWDL 221
Query: 478 RKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLR------- 528
+ +++ + ++ F N C TG IK+WDL +V +L+
Sbjct: 222 NEGKHLYTLDGGDIINALCFSPNRYWLCAATG---PSIKIWDLEGKIIVDELKQEVISTS 278
Query: 529 --GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
T L+ S DG + + DN VR+W +
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 91/213 (42%), Gaps = 11/213 (5%)
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN------QAVSMNNTYQVTSVA 496
+KGH+ +V + +I S S D T+ +W + Q +++ V+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 497 FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556
+ + L+G D +++WDL T + ++ GH+ V ++ S D I+S + D T++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 557 IWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616
+W+ C + H+ + +R + + S + + DK V +W+ ++
Sbjct: 131 LWNTLGV-----CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 617 YKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
GH G +N V P + S D L
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/274 (25%), Positives = 108/274 (39%), Gaps = 41/274 (14%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
+ L G+ DG L + D+ G H++++ SVA D Q+V+G
Sbjct: 76 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR----------QIVSGSR 125
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK--LL 1055
DK++KLW V DE SH E V C R SP+S ++
Sbjct: 126 DKTIKLWNTLGVCKYTVQDE-------SH-------------SEWVSCVRFSPNSSNPII 165
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
D VK++ L K + GH + ++ +S D +L A+G D +W L+ G
Sbjct: 166 VSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 225
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF---FISLYGHK 1172
H L D + + F P Y+ + +K WD + +I+ IS
Sbjct: 226 -HLYTLDGGDIINALCFSPN-RYWLCAATGPSIKIWDLEG--KIIVDELKQEVISTSSKA 281
Query: 1173 LP--VLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
P SL S D + G D V+VW + G
Sbjct: 282 EPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 121/310 (39%), Gaps = 41/310 (13%)
Query: 1096 LIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150
+I + S D+T+ +W L +YG ++L H V+ V + + S DG ++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1210
WD T F+ GH VLS+ S D+ I +GS D+T+K+W G C ++
Sbjct: 90 WD---LTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT-LGVCKYTV 142
Query: 1211 L--AHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL------ 1260
+H + V+ V F P + + D VK W+ N ++ T H YL
Sbjct: 143 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHTGYLNTVTVS 201
Query: 1261 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320
P +GG D LW L N T D +++ LCA
Sbjct: 202 PDGSLCASGGKDGQAMLWDL-----NEGKHLYTLDGG------DIINALCFSPNRYWLCA 250
Query: 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSYDSTLIATGSGDR 1378
P ++ + D KI + + IS P SL S D + G D
Sbjct: 251 ATGP-----SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN 305
Query: 1379 TVKVWGLDYG 1388
V+VW + G
Sbjct: 306 LVRVWQVTIG 315
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 92/227 (40%), Gaps = 22/227 (9%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH V + +S D +GS D T+++W L G + + H V V F
Sbjct: 58 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN 117
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST--LIATGSGDR 1194
+ S+D +K W+ + + + H V + S +S+ +I + D+
Sbjct: 118 RQIVSGSRDKTIKLWNT-----LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 172
Query: 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH- 1253
VKVW L + + H + VT P + KDG+ WD + + + TL
Sbjct: 173 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Query: 1254 --------FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292
F+PN Y + TG S+K+W LE + E +E
Sbjct: 233 GDIINALCFSPNRYW---LCAATG---PSIKIWDLEGKIIVDELKQE 273
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 13/201 (6%)
Query: 1048 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1107
+S D + D T++++ L T GH VLS+ S D+ I +GS D+T+K
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 1108 VWGLDYGDCHKSLL--AHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNFERIVTLH 1163
+W G C ++ +H + V+ V F P + + D VK W+ N ++ T H
Sbjct: 131 LWNT-LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNH 188
Query: 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223
GH + ++ +S D +L A+G D +W L+ G H L D + + F
Sbjct: 189 I-----GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTLDGGDIINALCFS 242
Query: 1224 PKTHYFFTTSKDGRVKQWDAD 1244
P Y+ + +K WD +
Sbjct: 243 PN-RYWLCAATGPSIKIWDLE 262
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 6/206 (2%)
Query: 38 FLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNG 97
L+ + +I+W L E +P L G H V + + D +G
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRA-----LRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 98 SLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH-RLS 156
+L+ + L T F GH + + + ++ +GS+D I LW+ + C +
Sbjct: 86 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 145
Query: 157 GHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS 216
H ++ +RF + +VS D VK+W+ H + V V + S
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 217 YLISGSNDAELKVWNVRDRSDIDTED 242
SG D + +W++ + + T D
Sbjct: 206 LCASGGKDGQAMLWDLNEGKHLYTLD 231
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 16/172 (9%)
Query: 359 EGHGGEIFCSKYHPDGQ--YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416
E H + C ++ P+ I S G+D+ + +W++ C+ GHTG + + S D
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL-ANCKLKTNHIGHTGYLNTVTVSPD 203
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
G + D +WDL +G+ + + G C R L A+G ++K+WD
Sbjct: 204 GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP---SIKIWD 260
Query: 477 PRK-------KNQAVSMNNTY---QVTSVAFNDTAECVLTGGIDNDIKMWDL 518
K + +S ++ Q TS+A++ + + G DN +++W +
Sbjct: 261 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 312
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 112 TFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE---CGLHR--LSGHKGVITDI 165
T GH +T I P + + S+D I++W + + G+ + L GH ++D+
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225
S F +S + D +++WD TG + H +V V ++ ++SGS D
Sbjct: 70 VISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 226 ELKVWN 231
+K+WN
Sbjct: 128 TIKLWN 133
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 116/325 (35%), Gaps = 88/325 (27%)
Query: 1186 LIATGSGDRTVKVWGL-----DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
+I + S D+T+ +W L +YG ++L H V+ V + + S DG ++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 1241 WD----------ADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREAD 1290
WD + + ++++ F+ + Q+V+G DK++KLW V D
Sbjct: 90 WDLTTGTTTRRFVGHTKDVLSVAFSSD-----NRQIVSGSRDKTIKLWNTLGVCKYTVQD 144
Query: 1291 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1350
E SH E V C R SP+S
Sbjct: 145 E-------SH-------------SEWVSCVRFSPNSS----------------------- 161
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
+ +I + D+ VKVW L + + H + VT P
Sbjct: 162 -----------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 1411 HYFFTTSKDGRVKQWDADNFERIVTL---HICSCSLNSPMNSVHLNSCPALEASNDIAEL 1467
+ KDG+ WD + + + TL I + SP N L C A S I +L
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP-NRYWL--CAATGPSIKIWDL 261
Query: 1468 LMECLATMKEYEVECKEMTAMGKPP 1492
E + E + E ++ +PP
Sbjct: 262 --EGKIIVDELKQEVISTSSKAEPP 284
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDT 139
+ SPN + + + +K ++L + + GH + + P G A+G KD
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 140 DIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD 191
+LWD+ L+ L G +I + F P +++ ++ + +KIWD +
Sbjct: 215 QAMLWDLNEGKHLYTLDGGD-IINALCF--SPNRYWLCAATGPS-IKIWDLE 262
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 35/240 (14%)
Query: 883 GHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGSYALSVC---FVPGDR 938
GH +V ++AFSSDN +VS + +K+WN + C T+ S++ V F P
Sbjct: 103 GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSS 161
Query: 939 HVLVGT--KDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
+ ++ + D + + ++ ++ + H+ L +V + PD +GG
Sbjct: 162 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS----------LCASGG 211
Query: 997 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056
D LW L N T D +++ LCA P +
Sbjct: 212 KDGQAMLWDL-----NEGKHLYTLDGG------DIINALCFSPNRYWLCAATGP-----S 255
Query: 1057 VSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114
+ + D KI + + IS P SL S D + G D V+VW + G
Sbjct: 256 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 19/263 (7%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
S + V + F + T + +W+ E ++ ++ T PVR G+
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTET------PVRAGK 62
Query: 461 LL-----IASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIK 514
+ I GSDD ++V++ + V + + S+A + T VL+G D +K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 515 MWDLRTN-SVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+W+ N ++ Q GH V ++ +P D S S +D TV++W + P +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTL 179
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
+G + N + Y+ S D + IWD T+ L GH +V+ FH
Sbjct: 180 TTGQERGV--NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 633 PKEPIIMSASSDKTIYLGESPLH 655
P PII+S S D T+ + S +
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTY 260
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 118/269 (43%), Gaps = 35/269 (13%)
Query: 900 LVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE 958
L + + +V+IWN + +R+I T + + F+ ++VG+ D R+ + + GE
Sbjct: 29 LTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE 88
Query: 959 ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1018
+ D AH + S+A+ P + P V++G D +VKLW E N A E+
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTK-------PY---VLSGSDDLTVKLWNWE----NNWALEQ 134
Query: 1019 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFL-DTFKFFI 1076
T + H E V+C +P D A LD TVK++ L + F
Sbjct: 135 TFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 1077 SLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP 1134
G + V +D D + T S D T+K+W C +L H +V+ F P
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 1135 KTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
+ S+DG +K W++ ++ TL+
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 110/253 (43%), Gaps = 31/253 (12%)
Query: 1196 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255
V++W + +S+ E V F+ + ++ S D R++ ++ + E++V +
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 1256 PNVYL------PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309
P+ Y+ P + V++G D +VKLW E N A E+T + H
Sbjct: 97 PD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNWALEQTFE---GH--------- 139
Query: 1310 TLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFL-DTFKFFISLYGHKLPVLSLDMSY- 1366
E V+C +P D A LD TVK++ L + F G + V +D
Sbjct: 140 ----EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 1367 -DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425
D + T S D T+K+W C +L H +V+ F P + S+DG +K W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 1426 DADNFERIVTLHI 1438
++ ++ TL++
Sbjct: 256 NSSTYKVEKTLNV 268
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 88/207 (42%), Gaps = 24/207 (11%)
Query: 374 GQYIASSGY------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427
G++IA + D +I +++ Y E + H + + ++ + S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 428 TLAVWDLEKGQRIKK-MKGHSTFV-----NSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481
T+ +W+ E +++ +GH FV N DP ASG D TVKVW +
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST-----FASGCLDRTVKVWSLGQST 174
Query: 482 QAVSMNNTYQVTSVAFNDTAEC-----VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTG 536
++ T Q V + D ++T D IK+WD +T S V L GH V+
Sbjct: 175 PNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233
Query: 537 LSLSPDGSYILSNAMDNTVRIWDIRPY 563
P I+S + D T++IW+ Y
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 84/194 (43%), Gaps = 18/194 (9%)
Query: 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1156
I GS D ++V+ + G+ AH D + + P Y + S D VK W+ +N
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN- 128
Query: 1157 ERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1215
+ GH+ V+ + + D + A+G DRTVKVW L + +L ++
Sbjct: 129 ----NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 1216 SVTGVTFV-----PKTHYFFTTSKDGRVKQWDADNFERIVTL-----HFNPNVYLPLQIQ 1265
GV +V P Y T S D +K WD + TL + + V+ P
Sbjct: 185 R--GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 1266 VVTGGGDKSVKLWQ 1279
+++G D ++K+W
Sbjct: 243 IISGSEDGTLKIWN 256
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRFMS 169
TF GH+ + + ++P A+G D + +W + L+ G + + + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
P ++++++ D +KIWD T C T+ H++ V +ISGS D LK+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 230 WN 231
WN
Sbjct: 255 WN 256
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 10/180 (5%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
++ E H I HP Y+ S D + +W+ GH VM + F+
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 415 TDGCHIFTCS-TDQTLAVWDLEKGQRIKKMK---GHSTFVNSCD--PVRRGQLLIASGSD 468
F D+T+ VW L GQ G VN D P+ +I + SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASD 206
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVA-FNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
D T+K+WD + K+ ++ S A F+ T +++G D +K+W+ T V + L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 26/235 (11%)
Query: 1032 LHTRTLKLEEQ-VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
+ R++++ E V + + V D +++F +T + + H + S+ +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRV 1148
+ +GS D TVK+W + ++ HE V V F PK F + D V
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1149 KQWD----ADNF------ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198
K W NF ER V ++ Y LP D + T S D T+K+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVN---YVDYY--PLP--------DKPYMITASDDLTIKI 212
Query: 1199 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
W C +L H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 64 EKHEALLLPGEKHE---VCQLSPNHDSSQLAVAYTNGSLKTFSL-DTTDVISTFTGHKSA 119
E + AL E HE +C D S A + ++K +SL +T + TG +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 120 ITVIQYDPLGHR--LATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
+ + Y PL + + T S D I +WD + + L GH ++ F P ++
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIII 244
Query: 178 SSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV--MREDSYLISGSNDA 225
S ++D +KIW++ T KT+ L W + +Y+ SG ++
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167
D+ TF+ + I + P + T + +W+ + + + + + +F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKF 63
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAEL 227
+++ ++++ + D +++++ +TG+ AH + + V Y++SGS+D +
Sbjct: 64 IAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 228 KVWN 231
K+WN
Sbjct: 122 KLWN 125
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 25/227 (11%)
Query: 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI--GVMSGHTGAVMDLKFSTDG 417
GH ++ + D + I S+ DR I +W+ GEC+ GH V ++FS +
Sbjct: 470 GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529
Query: 418 CH--IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
I + S D+T+ VW+L + + GH+ +V++ G L ASG D V +W
Sbjct: 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGGKDGVVLLW 588
Query: 476 DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR------- 528
D + + S+ + ++ F+ L ++ IK+WDL + S+V+ L+
Sbjct: 589 DLAEGKKLYSLEANSVIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA 647
Query: 529 ------GHSDT------VTGLSLSPDGSYILSNAMDNTVRIWDIRPY 563
G + T T L+ S DGS + S D +R+W I Y
Sbjct: 648 EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGRY 694
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 377 IASSGYDRQIFIWSVYGECENIGV----MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432
I S+ D+ I +W + + + GV ++GH+ V D+ S+DG + S D L +W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQ 491
DL G ++ GH+ V S I S S D T+K+W+ + +S
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSV-AFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Query: 492 ---VTSVAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI 546
V+ V F N +++ D +K+W+L + L GH+ V+ +++SPDGS
Sbjct: 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLC 576
Query: 547 LSNAMDNTVRIWDI 560
S D V +WD+
Sbjct: 577 ASGGKDGVVLLWDL 590
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 29/260 (11%)
Query: 443 MKGHSTFVNS-CDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------NNTYQVTSV 495
M+ H+ V + P+ +++ S S D ++ +W K ++A + +++ V V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIV-SASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 496 AFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTV 555
+ + L+G D ++++WDL ++ GH+ V ++ S D I+S + D T+
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 556 RIWDIRPYVPGERCVKVMS--GHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613
++W+ GE C +S G H + +R + + + + S DK V +W+ +
Sbjct: 497 KLWNTL----GE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC 551
Query: 614 RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE----SPLHCDKAGSILRSGKGR 669
++ L GH G V+ V P + S D + L + L+ +A S+
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV------- 604
Query: 670 VHTMVNDKHRQILCC---HG 686
+H + +R LC HG
Sbjct: 605 IHALCFSPNRYWLCAATEHG 624
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 25/255 (9%)
Query: 373 DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432
DGQ+ S +D ++ +W + + GHT V+ + FS D I + S D+T+ +W
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 433 DLE---KGQRIKKMKGHSTFVNSCDPVRRG----QLLIASGSDDCTVKVWDPRK-KNQAV 484
+ K + +GH +V SC VR Q I S S D TVKVW+ K ++
Sbjct: 500 NTLGECKYTISEGGEGHRDWV-SC--VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRST 556
Query: 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS 544
+T V++VA + +GG D + +WDL + L +S + L SP+
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPN-R 614
Query: 545 YILSNAMDNTVRIWDIRPYVPGE--------RCVKVMSGHQHNFEKNLLRCA---WSVSG 593
Y L A ++ ++IWD+ E K + ++ ++ C WS G
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674
Query: 594 LYVTAGSADKCVYIW 608
+ +G D + +W
Sbjct: 675 STLFSGYTDGVIRVW 689
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 116/279 (41%), Gaps = 45/279 (16%)
Query: 938 RHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
+ L G+ DG L + D+ AG H++++ SVA D Q+V+
Sbjct: 443 QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR----------QIVSASR 492
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS--KLL 1055
D+++KLW + E + H+ + V C R SP++ +
Sbjct: 493 DRTIKLW-----NTLGECKYTISEGGEGHR-------------DWVSCVRFSPNTLQPTI 534
Query: 1056 AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115
+ D TVK++ L K +L GH V ++ +S D +L A+G D V +W L G
Sbjct: 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK 594
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK--- 1172
SL A+ + + F P ++ ++ G +K WD ++ + L + K
Sbjct: 595 KLYSLEANS-VIHALCFSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADN 652
Query: 1173 ----------LPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201
+ SL+ S D + + +G D ++VWG+
Sbjct: 653 SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 107/256 (41%), Gaps = 32/256 (12%)
Query: 1183 DSTLIATGSGDRTVKVWGLD-----YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237
++ +I + S D+++ +W L YG + L H V V + + S DG
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 1238 VKQWD--ADNFERIVTLHFNPNVYLPLQI---QVVTGGGDKSVKLWQLELVSVNREADEE 1292
++ WD A R H + + + Q+V+ D+++KLW + E
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW-----NTLGECKYT 508
Query: 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS--KLLAVSLLDTTVKIFFLDTFKFFI 1350
+ H+ + V C R SP++ + + D TVK++ L K
Sbjct: 509 ISEGGEGHR-------------DWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRS 555
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1410
+L GH V ++ +S D +L A+G D V +W L G SL A+ + + F P
Sbjct: 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNR 614
Query: 1411 HYFFTTSKDGRVKQWD 1426
++ ++ G +K WD
Sbjct: 615 YWLCAATEHG-IKIWD 629
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L GH V + +S D +GS D +++W L G + + H V V F
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISL--YGHKLPVLSLDMSYDS--TLIATGSGD 1193
+ S+D +K W+ + + IS GH+ V + S ++ I + S D
Sbjct: 486 QIVSASRDRTIKLWNT-----LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540
Query: 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
+TVKVW L +L H V+ V P + KDG V WD +++ +L
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Query: 1254 ---------FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSV 1285
F+PN Y + + +K+W LE S+
Sbjct: 601 ANSVIHALCFSPNRYW------LCAATEHGIKIWDLESKSI 635
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 82/197 (41%), Gaps = 10/197 (5%)
Query: 43 ASED--VIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLK 100
AS D +I+W L +KA + + L G H V + + D +G L+
Sbjct: 401 ASRDKSIILWKLTKDDKAYGVAQRR-----LTGHSHFVEDVVLSSDGQFALSGSWDGELR 455
Query: 101 TFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL---HRLSG 157
+ L F GH + + + ++ + S+D I LW+ + EC G
Sbjct: 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG 515
Query: 158 HKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSY 217
H+ ++ +RF +VS++ D VK+W+ T+A H V V V + S
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 218 LISGSNDAELKVWNVRD 234
SG D + +W++ +
Sbjct: 576 CASGGKDGVVLLWDLAE 592
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 73 GEKHE----VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPL 128
GE H + SPN + A + ++K ++L + ST GH ++ + P
Sbjct: 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD 572
Query: 129 GHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188
G A+G KD ++LWD+ L+ L + VI + F P +++ +A + +KIW
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCF--SPNRYWLC-AATEHGIKIW 628
Query: 189 DADT 192
D ++
Sbjct: 629 DLES 632
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 19/260 (7%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
S + V + F + T + +W+ E ++ ++ T PVR G+
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET------PVRAGK 62
Query: 461 LL-----IASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIK 514
+ I GSDD ++V++ + V + + S+A + T VL+G D +K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 515 MWDLRTN-SVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+W+ N ++ Q GH V ++ +P D S S +D TV++W + P +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTL 179
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
+G + N + Y+ S D + IWD T+ L GH +V+ FH
Sbjct: 180 TTGQERGV--NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 633 PKEPIIMSASSDKTIYLGES 652
P PII+S S D T+ + S
Sbjct: 238 PTLPIIISGSEDGTLKIWNS 257
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 36/282 (12%)
Query: 888 VRALAF-SSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTK 945
V+ + F ++ L + + +V++WN + +R+I T + + F+ ++VG+
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
D R+ + + GE + D AH + S+A+ P + V++G D +VKLW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP----------TKPYVLSGSDDLTVKLWN 125
Query: 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTV 1064
E N A E+T + H E V+C +P D A LD TV
Sbjct: 126 WE----NNWALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1065 KIFFL-DTFKFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121
K++ L + F G + V +D D + T S D T+K+W C +L
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 79/334 (23%)
Query: 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
D K+ D V G+ F P + TT GRV+ W N+E V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW---NYETQVEV------------ 48
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+S+ E V F+ + ++ S
Sbjct: 49 ---------------------------------RSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYL------PLQIQVVTGGGDKSVKLWQLELVSVNRE 1288
D R++ ++ + E++V +P+ Y+ P + V++G D +VKLW E N
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNW 130
Query: 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFL-DTF 1346
A E+T + H E V+C +P D A LD TVK++ L +
Sbjct: 131 ALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 1347 KFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1404
F G + V +D D + T S D T+K+W C +L H +V+
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 1405 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438
F P + S+DG +K W++ ++ TL++
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 374 GQYIASSGY------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427
G++IA + D +I +++ Y E + H + + ++ + S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 428 TLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486
T+ +W+ E +++ +GH FV + ASG D TVKVW + ++
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 487 NNTYQVTSVAFNDTAEC-----VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
T Q V + D ++T D IK+WD +T S V L GH V+ P
Sbjct: 180 T-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 542 DGSYILSNAMDNTVRIWDIRPY 563
I+S + D T++IW+ Y
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTY 260
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRFMS 169
TF GH+ + + ++P A+G D + +W + L+ G + + + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
P ++++++ D +KIWD T C T+ H++ V +ISGS D LK+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 230 WN 231
WN
Sbjct: 255 WN 256
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 9/206 (4%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
++ E H I HP Y+ S D + +W+ GH VM + F+
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 415 TDGCHIFTCS-TDQTLAVWDL-EKGQRIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDC 470
F D+T+ VW L + G VN D P+ +I + SDD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDL 208
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVA-FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
T+K+WD + K+ ++ S A F+ T +++G D +K+W+ T V + L
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 530 HSDTVTGLSLSPDG--SYILSNAMDN 553
+ ++ P G +YI S DN
Sbjct: 269 GLERSWCIATHPTGRKNYIAS-GFDN 293
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 10/227 (4%)
Query: 1032 LHTRTLKLEEQ-VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
+ R++++ E V + + V D +++F +T + + H + S+ +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRV 1148
+ +GS D TVK+W + ++ HE V V F PK F + D V
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDC 1206
K W TL G + V +D D + T S D T+K+W C
Sbjct: 166 KVWSLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
+L H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 64 EKHEALLLPGEKHE---VCQLSPNHDSSQLAVAYTNGSLKTFSL-DTTDVISTFTGHKSA 119
E + AL E HE +C D S A + ++K +SL +T + TG +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 120 ITVIQYDPLGHR--LATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
+ + Y PL + + T S D I +WD + + L GH ++ F P ++
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIII 244
Query: 178 SSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV--MREDSYLISGSNDA 225
S ++D +KIW++ T KT+ L W + +Y+ SG ++
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167
D+ TF+ + I + P + T + LW+ + + + + + +F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAEL 227
+++ ++++ + D +++++ +TG+ AH + + V Y++SGS+D +
Sbjct: 64 IAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 228 KVWN 231
K+WN
Sbjct: 122 KLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 77.4 bits (189), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 19/260 (7%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
S + V + F + T + +W+ E ++ ++ T PVR G+
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET------PVRAGK 62
Query: 461 LL-----IASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIK 514
+ I GSDD ++V++ + V + + S+A + T VL+G D +K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 515 MWDLRTN-SVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+W+ N ++ Q GH V ++ +P D S S +D TV++W + P +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTL 179
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
+G + N + Y+ S D + IWD T+ L GH +V+ FH
Sbjct: 180 TTGQERGV--NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 633 PKEPIIMSASSDKTIYLGES 652
P PII+S S D T+ + S
Sbjct: 238 PTLPIIISGSEDGTLKIWNS 257
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 36/282 (12%)
Query: 888 VRALAF-SSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTK 945
V+ + F ++ L + + +V++WN + +R+I T + + F+ ++VG+
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
D R+ + + GE + D AH + S+A+ P + V++G D +VKLW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP----------TKPYVLSGSDDLTVKLWN 125
Query: 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTV 1064
E N A E+T + H E V+C +P D A LD TV
Sbjct: 126 WE----NNWALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1065 KIFFL-DTFKFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121
K++ L + F G + V +D D + T S D T+K+W C +L
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 79/334 (23%)
Query: 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
D K+ D V G+ F P + TT GRV+ W N+E V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW---NYETQVEV------------ 48
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+S+ E V F+ + ++ S
Sbjct: 49 ---------------------------------RSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYL------PLQIQVVTGGGDKSVKLWQLELVSVNRE 1288
D R++ ++ + E++V +P+ Y+ P + V++G D +VKLW E N
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNW 130
Query: 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFL-DTF 1346
A E+T + H E V+C +P D A LD TVK++ L +
Sbjct: 131 ALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 1347 KFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1404
F G + V +D D + T S D T+K+W C +L H +V+
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 1405 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438
F P + S+DG +K W++ ++ TL++
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 374 GQYIASSGY------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427
G++IA + D +I +++ Y E + H + + ++ + S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 428 TLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486
T+ +W+ E +++ +GH FV + ASG D TVKVW + ++
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 487 NNTYQVTSVAFNDTAEC-----VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
T Q V + D ++T D IK+WD +T S V L GH V+ P
Sbjct: 180 T-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 542 DGSYILSNAMDNTVRIWDIRPY 563
I+S + D T++IW+ Y
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTY 260
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRFMS 169
TF GH+ + + ++P A+G D + +W + L+ G + + + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
P ++++++ D +KIWD T C T+ H++ V +ISGS D LK+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 230 WN 231
WN
Sbjct: 255 WN 256
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 9/206 (4%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
++ E H I HP Y+ S D + +W+ GH VM + F+
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 415 TDGCHIFTCS-TDQTLAVWDL-EKGQRIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDC 470
F D+T+ VW L + G VN D P+ +I + SDD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASDDL 208
Query: 471 TVKVWDPRKKNQAVSMNNTYQVTSVA-FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
T+K+WD + K+ ++ S A F+ T +++G D +K+W+ T V + L
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Query: 530 HSDTVTGLSLSPDG--SYILSNAMDN 553
+ ++ P G +YI S DN
Sbjct: 269 GLERSWCIATHPTGRKNYIAS-GFDN 293
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 92/227 (40%), Gaps = 10/227 (4%)
Query: 1032 LHTRTLKLEEQ-VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
+ R++++ E V + + V D +++F +T + + H + S+ +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRV 1148
+ +GS D TVK+W + ++ HE V V F PK F + D V
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDC 1206
K W TL G + V +D D + T S D T+K+W C
Sbjct: 166 KVWSLGQSTPNFTL-----TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220
Query: 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
+L H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 64 EKHEALLLPGEKHE---VCQLSPNHDSSQLAVAYTNGSLKTFSL-DTTDVISTFTGHKSA 119
E + AL E HE +C D S A + ++K +SL +T + TG +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 120 ITVIQYDPLGHR--LATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
+ + Y PL + + T S D I +WD + + L GH ++ F P ++
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIII 244
Query: 178 SSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV--MREDSYLISGSNDA 225
S ++D +KIW++ T KT+ L W + +Y+ SG ++
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 39.7 bits (91), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167
D+ TF+ + I + P + T + LW+ + + + + + +F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAEL 227
+++ ++++ + D +++++ +TG+ AH + + V Y++SGS+D +
Sbjct: 64 IAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 228 KVWN 231
K+WN
Sbjct: 122 KLWN 125
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 43/314 (13%)
Query: 358 LEGHGGEIF-CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416
L GH + C ++ + Y+ + D+ I ++ + + + +SGH G V LK++
Sbjct: 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK-KFLLQLSGHDGGVWALKYAHG 173
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL-LIASGSDDCTVKVW 475
G + + STD+T+ VWD++KG +GH++ V D V + I +GS D T+ VW
Sbjct: 174 GI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 476 D----------------------PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513
P + V + + + + V++G DN +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTL 292
Query: 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573
+WD+ + L GH+D + + +S +MD T+RIWD+ GE + +
Sbjct: 293 IVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGE-LMYTL 348
Query: 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT--TRRIAYKLPGHNGSVNDVQF 631
GH LLR +S ++ + +AD + WD +R+ +Y H F
Sbjct: 349 QGHTALV--GLLR----LSDKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF 399
Query: 632 HPKEPIIMSASSDK 645
+ + I++S S ++
Sbjct: 400 YVSDNILVSGSENQ 413
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 34/270 (12%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D ++++ KF + L GH V +L ++ L++ GS DRTV+VW + G C
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHVF 199
Query: 1121 LAHEDSVTGVTFV--PKTHYFFTTSKDGRVKQWD----------ADNFERIVTLH----- 1163
H +V + V Y T S+D + W + + + H
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 1164 -FFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1221
+F+ L GH V + +S ++ +GS D T+ VW + C L H D +
Sbjct: 260 PYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTI 317
Query: 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ---VVTGGGDKSVKLW 1278
+ + + S D ++ WD +N E + TL + + L++ +V+ D S++ W
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHT 1308
+A++ ++ S H LS + T
Sbjct: 378 ---------DANDYSRKFSYHHTNLSAITT 398
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 48/308 (15%)
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y T + D ++ +D+ N + F + L GH V +L ++ L++ GS DRTV
Sbjct: 133 NYVITGADDKMIRVYDSINKK------FLLQLSGHDGGVWALKYAHGGILVS-GSTDRTV 185
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFV--PKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254
+VW + G C H +V + V Y T S+D + W
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK------------ 233
Query: 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
LP + V G + LV E + V R H + RT
Sbjct: 234 -----LPKESSVPDHGEEH-----DYPLVFHTPEENPYFVGVLRGH----MASVRT---- 275
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
VS ++ D T+ ++ + K L GH + S ++ +
Sbjct: 276 -------VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D T+++W L+ G+ +L H V + K + + + DG ++ WDA+++ R
Sbjct: 329 SMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKF 386
Query: 1435 TLHICSCS 1442
+ H + S
Sbjct: 387 SYHHTNLS 394
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE 502
++GH T V +C ++ +G+DD ++V+D K + ++
Sbjct: 117 LRGHMTSVITCLQFEDNYVI--TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 503 CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSL--SPDGSYILSNAMDNTVRIWDI 560
+++G D +++WD++ GH+ TV L + + YI++ + DNT+ +W +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 561 RPYVPGERCVKVMSGHQHNF-------EKN-----LLR----CAWSVSGL--YVTAGSAD 602
P E V G +H++ E+N +LR +VSG V +GS D
Sbjct: 235 ----PKESSVP-DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 289
Query: 603 KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+ +WD + Y L GH + + + +SAS D TI
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
+ GH +++ + G+ + +GS D +++WDV L+ LSGH I +
Sbjct: 263 VGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
+ +S++ DT ++IWD + G+ T+ H T + G+ + D +L+S + D ++
Sbjct: 321 ERKR--CISASMDTTIRIWDLENGELMYTLQGH-TALVGLLRL-SDKFLVSAAADGSIRG 376
Query: 230 WNVRDRS 236
W+ D S
Sbjct: 377 WDANDYS 383
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 97/211 (45%), Gaps = 22/211 (10%)
Query: 37 RFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLL---PGEKHEVCQLSPNHDSSQLAV 92
+++ TG+ ++ + +W L E ++ GE+H+ L+ P E + H +S V
Sbjct: 218 KYIVTGSRDNTLHVWKLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 93 AYTNGSLKTFSLDTTDVI---------STFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143
+ + + S D T ++ +GH I YD R + S DT I +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 144 WDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
WD+ ++ L GH ++ +R + F+VS+A D ++ WDA+ D + + H
Sbjct: 337 WDLENGELMYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAN--DYSRKFSYHH 390
Query: 204 TEVWGVCVMR-EDSYLISGSNDAELKVWNVR 233
T + + D+ L+SGS + + ++N+R
Sbjct: 391 TNLSAITTFYVSDNILVSGSEN-QFNIYNLR 420
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 111 STFTGH-KSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
+T GH S IT +Q++ + + TG+ D I ++D + + L +LSGH G + +++ +
Sbjct: 115 TTLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-A 171
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEV--WGVCVMREDSYLISGSNDAEL 227
G +VS + D V++WD G C H + V + + Y+++GS D L
Sbjct: 172 HGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 228 KVWNVRDRSDI 238
VW + S +
Sbjct: 230 HVWKLPKESSV 240
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 141/368 (38%), Gaps = 42/368 (11%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQVKIW---NRPSLSCLRTIDTGSYALSVCFVPGDR 938
+GH + V DN + A ++++ N+ L L D G +AL + G
Sbjct: 118 RGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK--YAHGG- 174
Query: 939 HVLV-GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
+LV G+ D + + DI G H+ + + ++ Y ++ +VTG
Sbjct: 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-------YKNIK-YIVTGSR 225
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK------LEEQVLCAR-VSP 1050
D ++ +W+L + D H + HT L + R VS
Sbjct: 226 DNTLHVWKLP-------KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG 278
Query: 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
++ D T+ ++ + K L GH + S ++ + S D T+++W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Query: 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG 1170
L+ G+ +L H V + K + + + DG ++ WDA+++ R +
Sbjct: 339 LENGELMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSY-------- 388
Query: 1171 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFVPKTHYF 1229
H + ++ Y S I + ++ L G H ++L D + V F KT
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 447
Query: 1230 FTTSKDGR 1237
KDG+
Sbjct: 448 AAVEKDGQ 455
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 36/193 (18%)
Query: 75 KHEVCQLSPNHDSSQLAVAYTNGS-LKTFSLDTTDVI---------STFTGHKSAIT--- 121
K + QLS HD A+ Y +G L + S D T + F GH S +
Sbjct: 152 KKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 122 VIQYDPLGHRLATGSKDTDIVLWDVVAECGL--------HRLSGH------------KGV 161
+++Y + + + TGS+D + +W + E + + L H +G
Sbjct: 211 IVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISG 221
+ +R +S G+ VVS + D + +WD C ++ H ++ E IS
Sbjct: 270 MASVRTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 222 SNDAELKVWNVRD 234
S D +++W++ +
Sbjct: 329 SMDTTIRIWDLEN 341
Score = 32.3 bits (72), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 8/145 (5%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
+ +L GH I+ + Y + + S+ D I IW + E + + GHT V L+ S
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL-ENGELMYTLQGHTALVGLLRLS 361
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
+ + + D ++ WD R K H T +++ ++ SGS++ +
Sbjct: 362 DK--FLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGSEN-QFNI 416
Query: 475 WDPR--KKNQAVSMNNTYQVTSVAF 497
++ R K A + + Q+ SV F
Sbjct: 417 YNLRSGKLVHANILKDADQIWSVNF 441
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 19/263 (7%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
S + V + F + T + +W+ E ++ ++ T PVR G+
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET------PVRAGK 62
Query: 461 LL-----IASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGIDNDIK 514
+ I GSDD ++V++ + V + + S+A + T VL+G D +K
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 515 MWDLRTN-SVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
+W+ N ++ Q GH V ++ +P D S S +D TV++W + P +
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN---FTL 179
Query: 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632
+G + N + Y+ S D + IWD T+ L GH +V+ FH
Sbjct: 180 TTGQERGV--NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 633 PKEPIIMSASSDKTIYLGESPLH 655
P PII+S S D T+ + S +
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTY 260
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 36/282 (12%)
Query: 888 VRALAF-SSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTK 945
V+ + F ++ L + + +V++WN + +R+I T + + F+ ++VG+
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 946 DGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQ 1005
D R+ + + GE + D AH + S+A+ P + V++G D +VKLW
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHP----------TKPYVLSGSDDLTVKLWN 125
Query: 1006 LELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTV 1064
E N A E+T + H E V+C +P D A LD TV
Sbjct: 126 WE----NNWALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1065 KIFFL-DTFKFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121
K++ L + F G + V +D D + T S D T+K+W C +L
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE 225
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 226 GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 127/334 (38%), Gaps = 79/334 (23%)
Query: 1115 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP 1174
D K+ D V G+ F P + TT GRV+ W N+E V +
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW---NYETQVEV------------ 48
Query: 1175 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1234
+S+ E V F+ + ++ S
Sbjct: 49 ---------------------------------RSIQVTETPVRAGKFIARKNWIIVGSD 75
Query: 1235 DGRVKQWDADNFERIVTLHFNPNVYL------PLQIQVVTGGGDKSVKLWQLELVSVNRE 1288
D R++ ++ + E++V +P+ Y+ P + V++G D +VKLW E N
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWE----NNW 130
Query: 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFL-DTF 1346
A E+T + H E V+C +P D A LD TVK++ L +
Sbjct: 131 ALEQTFE---GH-------------EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174
Query: 1347 KFFISLYGHKLPVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1404
F G + V +D D + T S D T+K+W C +L H +V+
Sbjct: 175 PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234
Query: 1405 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438
F P + S+DG +K W++ ++ TL++
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 374 GQYIASSGY------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427
G++IA + D +I +++ Y E + H + + ++ + S D
Sbjct: 61 GKFIARKNWIIVGSDDFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 428 TLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486
T+ +W+ E +++ +GH FV + ASG D TVKVW + ++
Sbjct: 120 TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 487 NNTYQVTSVAFNDTAEC-----VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
T Q V + D ++T D IK+WD +T S V L GH V+ P
Sbjct: 180 T-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 542 DGSYILSNAMDNTVRIWDIRPY 563
I+S + D T++IW+ Y
Sbjct: 239 TLPIIISGSEDGTLKIWNSSTY 260
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 112 TFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVAECGLHRLS-GHKGVITDIRFMS 169
TF GH+ + + ++P A+G D + +W + L+ G + + + +
Sbjct: 135 TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP 194
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
P ++++++ D +KIWD T C T+ H++ V +ISGS D LK+
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKI 254
Query: 230 WN 231
WN
Sbjct: 255 WN 256
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 10/180 (5%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
++ E H I HP Y+ S D + +W+ GH VM + F+
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN 149
Query: 415 TDGCHIFTCS-TDQTLAVWDLEKGQRIKKMK---GHSTFVNSCD--PVRRGQLLIASGSD 468
F D+T+ VW L GQ G VN D P+ +I + SD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TASD 206
Query: 469 DCTVKVWDPRKKNQAVSMNNTYQVTSVA-FNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
D T+K+WD + K+ ++ S A F+ T +++G D +K+W+ T V + L
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 26/235 (11%)
Query: 1032 LHTRTLKLEEQ-VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDM 1090
+ R++++ E V + + V D +++F +T + + H + S+ +
Sbjct: 46 VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV 105
Query: 1091 SYDSTLIATGSGDRTVKVWGLDYG-DCHKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRV 1148
+ +GS D TVK+W + ++ HE V V F PK F + D V
Sbjct: 106 HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165
Query: 1149 KQWD----ADNF------ERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198
K W NF ER V ++ Y LP D + T S D T+K+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVN---YVDYY--PLP--------DKPYMITASDDLTIKI 212
Query: 1199 WGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1253
W C +L H +V+ F P + S+DG +K W++ ++ TL+
Sbjct: 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 10/170 (5%)
Query: 64 EKHEALLLPGEKHE---VCQLSPNHDSSQLAVAYTNGSLKTFSL-DTTDVISTFTGHKSA 119
E + AL E HE +C D S A + ++K +SL +T + TG +
Sbjct: 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG 186
Query: 120 ITVIQYDPLGHR--LATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
+ + Y PL + + T S D I +WD + + L GH ++ F P ++
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF--HPTLPIII 244
Query: 178 SSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCV--MREDSYLISGSNDA 225
S ++D +KIW++ T KT+ L W + +Y+ SG ++
Sbjct: 245 SGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/124 (18%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRF 167
D+ TF+ + I + P + T + LW+ + + + + + +F
Sbjct: 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKF 63
Query: 168 MSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAEL 227
+++ ++++ + D +++++ +TG+ AH + + V Y++SGS+D +
Sbjct: 64 IAR--KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 228 KVWN 231
K+WN
Sbjct: 122 KLWN 125
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 88/319 (27%), Positives = 133/319 (41%), Gaps = 68/319 (21%)
Query: 1113 YGDCHKSLLAHEDSVTGVTF----VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISL 1168
YG K AH+D++ V + + T S D VK W + ER L SL
Sbjct: 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-ER---LDLQWSL 76
Query: 1169 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHY 1228
GH+L V+S+D+S+ + A+ S D +++W L+ G KS+ A
Sbjct: 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA---------------- 120
Query: 1229 FFTTSKDGRVKQWDADNFERIVTLHFNPNV-YLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287
G V W TL F+P+ YL V ++ + V
Sbjct: 121 -------GPVDAW---------TLAFSPDSQYLATGTHVG-----------KVNIFGVES 153
Query: 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK 1347
E + D +R +LS+ + SPD K LA +D + IF + T K
Sbjct: 154 GKKEYSLD-TRGKFILSIAY---------------SPDGKYLASGAIDGIINIFDIATGK 197
Query: 1348 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1407
+L GH +P+ SL S DS L+ T S D +K++ + + + +L H V V F
Sbjct: 198 LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 1408 PKTHYFFTTSKDGRVKQWD 1426
P +F ++S D VK WD
Sbjct: 258 PDDTHFVSSSSDKSVKVWD 276
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 123/286 (43%), Gaps = 31/286 (10%)
Query: 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREAD 1016
G + + AH +WSVA ++ + VVTG D VK+W+
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSE------TVVTGSLDDLVKVWKWR--------- 66
Query: 1017 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1076
+E D+ S + L V+ +S + A S LD ++++ L+ K
Sbjct: 67 DERLDLQWSLEGHQL----------GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK 116
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
S+ + +L S DS +ATG+ V ++G++ G SL + + + P
Sbjct: 117 SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG 176
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
Y + + DG + +D I T +L GH +P+ SL S DS L+ T S D +
Sbjct: 177 KYLASGAIDGIINIFD------IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYI 230
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1242
K++ + + + +L H V V F P +F ++S D VK WD
Sbjct: 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 117/255 (45%), Gaps = 10/255 (3%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
+ GH V+ + S + S D + +WDLE G++IK + + Q
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ-VTSVAFNDTAECVLTGGIDNDIKMWDLR 519
L A+G+ V ++ + S++ + + S+A++ + + +G ID I ++D+
Sbjct: 136 YL-ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
T ++ L GH+ + L+ SPD +++ + D ++I+D++ +SGH
Sbjct: 195 TGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH----ANLAGTLSGH--- 247
Query: 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIM 639
+L A+ + + S+DK V +WD TR + H V V+++ I+
Sbjct: 248 -ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIV 306
Query: 640 SASSDKTIYLGESPL 654
S D+ I++ + P+
Sbjct: 307 SVGDDQEIHIYDCPI 321
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 12/203 (5%)
Query: 463 IASGSDDCTVKVW---DPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519
+ +GS D VKVW D R Q + V SV + T + +D I++WDL
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
++ + L+ SPD Y+ + V I+ + G++ + +
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES---GKKEYSLDTR---- 163
Query: 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIM 639
K +L A+S G Y+ +G+ D + I+D T ++ + L GH + + F P +++
Sbjct: 164 -GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 640 SASSDKTIYLGESPLHCDKAGSI 662
+AS D I + + H + AG++
Sbjct: 223 TASDDGYIKIYDVQ-HANLAGTL 244
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 2/164 (1%)
Query: 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGS 136
+ L+ + DS LA G + F +++ + I I Y P G LA+G+
Sbjct: 124 DAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183
Query: 137 KDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCF 196
D I ++D+ LH L GH I + F P +V+++ D ++KI+D +
Sbjct: 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTF--SPDSQLLVTASDDGYIKIYDVQHANLA 241
Query: 197 KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDT 240
T++ H + V V +D++ +S S+D +KVW+V R+ + T
Sbjct: 242 GTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHT 285
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 63 GEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITV 122
G+K +L G+ SP D LA +G + F + T ++ T GH I
Sbjct: 154 GKKEYSLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRS 211
Query: 123 IQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKD 182
+ + P L T S D I ++DV LSGH + ++ F H VSS+ D
Sbjct: 212 LTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH--FVSSSSD 269
Query: 183 TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
VK+WD T C T H +VWGV S ++S +D E+ +++
Sbjct: 270 KSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 378 ASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG 437
ASS D I +W + + + +G A L FS D ++ T + + ++ +E G
Sbjct: 96 ASSSLDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHVGKVNIFGVESG 154
Query: 438 QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVA 496
++ + F+ S G+ L ASG+ D + ++D ++ + + S+
Sbjct: 155 KKEYSLDTRGKFILSIAYSPDGKYL-ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 497 FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556
F+ ++ ++T D IK++D++ ++ L GH+ V ++ PD ++ +S++ D +V+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273
Query: 557 IWDIRPYVPGER-CVKVMSGHQ 577
+WD+ G R CV HQ
Sbjct: 274 VWDV-----GTRTCVHTFFDHQ 290
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 38/239 (15%)
Query: 898 LALVSACASQVKIWNRPSLSCLRTIDTGSY-ALSVCFVPGDRHVLVGTKDGRLLIVDIGA 956
+A S+ + +++W+ + +++ID G A ++ F P +++ GT G++ I + +
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREAD 1016
G+ + + + S+A PD YL +G D + ++ +
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPD----GKYL------ASGAIDGIINIFDI---------- 193
Query: 1017 EETKDVSRSHKVLSLLHTRTLKLEEQVLCAR---VSPDSKLLAVSLLDTTVKIFFLDTFK 1073
LLHT LE + R SPDS+LL + D +KI+ +
Sbjct: 194 ----------ATGKLLHT----LEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239
Query: 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132
+L GH VL++ D T + S D++VKVW + C + H+D V GV +
Sbjct: 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKY 298
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 91/256 (35%), Gaps = 60/256 (23%)
Query: 1183 DSTLIATGSGDRTVKVWGL--DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
+S + TGS D VKVW + D SL H+ V V ++S D ++
Sbjct: 47 NSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106
Query: 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
WD +N ++I ++ P V W L
Sbjct: 107 WDLENGKQIKSIDAGP------------------VDAWTLAF------------------ 130
Query: 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVL 1360
SPDS+ LA V IF +++ K SL +L
Sbjct: 131 ----------------------SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 1361 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1420
S+ S D +A+G+ D + ++ + G +L H + +TF P + T S DG
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 1421 RVKQWDADNFERIVTL 1436
+K +D + TL
Sbjct: 229 YIKIYDVQHANLAGTL 244
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 35 EGRFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVA 93
+G++LA+GA + +I I+D+ A LL E H +P + L+ + DS L A
Sbjct: 175 DGKYLASGAIDGIINIFDI--ATGKLLHTLEGHA---MP-----IRSLTFSPDSQLLVTA 224
Query: 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLH 153
+G +K + + ++ T +GH S + + + P + S D + +WDV +H
Sbjct: 225 SDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284
Query: 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
H+ + +++ +VS D + I+D
Sbjct: 285 TFFDHQDQVWGVKYNGNGSK--IVSVGDDQEIHIYD 318
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 882 QGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLRTIDT-GSYALSVCFVPGDRH 939
+GH +R+L FS D+ LV+A +KI++ + T+ S+ L+V F P D H
Sbjct: 203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Query: 940 VLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDK 999
+ + D + + D+G + H ++W V ++N N ++V+ G D+
Sbjct: 263 FVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV-----KYNGN-----GSKIVSVGDDQ 312
Query: 1000 SVKLW 1004
+ ++
Sbjct: 313 EIHIY 317
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 116/284 (40%), Gaps = 46/284 (16%)
Query: 155 LSGHK-GVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213
L GH+ GV++ + P SS+ D +++WD + G K++ A + W +
Sbjct: 76 LEGHQLGVVSVDISHTLP---IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSP 132
Query: 214 EDSYLISGSNDAELKVWNV---RDRSDIDTEDKDKXXXXXXXXXXXXDEPDLTVSKIEVQ 270
+ YL +G++ ++ ++ V + +DT K D L I+
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK-----FILSIAYSPDGKYLASGAID-G 186
Query: 271 IINELKNLSTGKKKWLQVFR-LALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTV 329
IIN + +++TGK L A+ I S+T + D +Q L T S + + +
Sbjct: 187 IIN-IFDIATGKL--LHTLEGHAMPIRSLTFSPD--------SQLLVTAS---DDGYIKI 232
Query: 330 YDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389
YD + +NL L GH + + PD + SS D+ + +W
Sbjct: 233 YDVQH--------------ANLAGT---LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
Query: 390 SVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433
V G + H V +K++ +G I + DQ + ++D
Sbjct: 276 DV-GTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 43/314 (13%)
Query: 358 LEGHGGEIF-CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD 416
L GH + C ++ + Y+ + D+ I ++ + + + +SGH G V LK++
Sbjct: 117 LRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINK-KFLLQLSGHDGGVWALKYAHG 173
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL-LIASGSDDCTVKVW 475
G + + STD+T+ VWD++KG +GH++ V D V + I +GS D T+ VW
Sbjct: 174 GI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 476 D----------------------PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513
P + V + + + + V++G DN +
Sbjct: 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTL 292
Query: 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573
+WD+ + L GH+D + + +S + D T+RIWD+ GE +
Sbjct: 293 IVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELXYTLQ 349
Query: 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT--TRRIAYKLPGHNGSVNDVQF 631
H LLR +S ++ + +AD + WD +R+ +Y H F
Sbjct: 350 G---HTALVGLLR----LSDKFLVSAAADGSIRGWDANDYSRKFSYH---HTNLSAITTF 399
Query: 632 HPKEPIIMSASSDK 645
+ + I++S S ++
Sbjct: 400 YVSDNILVSGSENQ 413
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/270 (23%), Positives = 112/270 (41%), Gaps = 34/270 (12%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120
D ++++ KF + L GH V +L ++ L++ GS DRTV+VW + G C
Sbjct: 141 DKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHVF 199
Query: 1121 LAHEDSVTGVTFV--PKTHYFFTTSKDGRVKQWD----------ADNFERIVTLH----- 1163
H +V + V Y T S+D + W + + + H
Sbjct: 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEEN 259
Query: 1164 -FFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1221
+F+ L GH V + +S ++ +GS D T+ VW + C L H D +
Sbjct: 260 PYFVGVLRGHXASVRT--VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTI 317
Query: 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ---VVTGGGDKSVKLW 1278
+ + + S D ++ WD +N E TL + + L++ +V+ D S++ W
Sbjct: 318 YDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 377
Query: 1279 QLELVSVNREADEETKDVSRSHKVLSLLHT 1308
+A++ ++ S H LS + T
Sbjct: 378 ---------DANDYSRKFSYHHTNLSAITT 398
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 27/225 (12%)
Query: 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE 502
++GH T V +C ++ +G+DD ++V+D K + ++
Sbjct: 117 LRGHXTSVITCLQFEDNYVI--TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 503 CVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSL--SPDGSYILSNAMDNTVRIWDI 560
+++G D +++WD++ GH+ TV L + + YI++ + DNT+ +W +
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 561 RPYVPGERCVKVMSGHQHNF-------EKN-----LLR----CAWSVSGL--YVTAGSAD 602
P E V G +H++ E+N +LR +VSG V +GS D
Sbjct: 235 ----PKESSVP-DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYD 289
Query: 603 KCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+ +WD + Y L GH + + + +SAS D TI
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 118/308 (38%), Gaps = 48/308 (15%)
Query: 1137 HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196
+Y T + D ++ +D+ N + F + L GH V +L ++ L++ GS DRTV
Sbjct: 133 NYVITGADDKXIRVYDSINKK------FLLQLSGHDGGVWALKYAHGGILVS-GSTDRTV 185
Query: 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFV--PKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254
+VW + G C H +V + V Y T S+D + W
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK------------ 233
Query: 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
LP + V G + LV E + V R H RT
Sbjct: 234 -----LPKESSVPDHGEEH-----DYPLVFHTPEENPYFVGVLRGHXA----SVRT---- 275
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG 1374
VS ++ D T+ ++ + K L GH + S ++ +
Sbjct: 276 -------VSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
S D T+++W L+ G+ +L H V + K + + + DG ++ WDA+++ R
Sbjct: 329 SXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKF 386
Query: 1435 TLHICSCS 1442
+ H + S
Sbjct: 387 SYHHTNLS 394
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
+ GH +++ + G+ + +GS D +++WDV L+ LSGH I +
Sbjct: 263 VGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH 320
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKV 229
+ +S++ DT ++IWD + G+ T+ H T + G+ + D +L+S + D ++
Sbjct: 321 ERKR--CISASXDTTIRIWDLENGELXYTLQGH-TALVGLLRL-SDKFLVSAAADGSIRG 376
Query: 230 WNVRDRS 236
W+ D S
Sbjct: 377 WDANDYS 383
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 111 STFTGHK-SAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMS 169
+T GH S IT +Q++ + + TG+ D I ++D + + L +LSGH G + +++ +
Sbjct: 115 TTLRGHXTSVITCLQFED--NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-A 171
Query: 170 QPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEV--WGVCVMREDSYLISGSNDAEL 227
G +VS + D V++WD G C H + V + + Y+++GS D L
Sbjct: 172 HGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL 229
Query: 228 KVWNVRDRSDI 238
VW + S +
Sbjct: 230 HVWKLPKESSV 240
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 22/211 (10%)
Query: 37 RFLATGASEDVI-IWDLRLAEKALLLPGEKHEALLL---PGEKHEVCQLSPNHDSSQLAV 92
+++ TG+ ++ + +W L E ++ GE+H+ L+ P E + H +S V
Sbjct: 218 KYIVTGSRDNTLHVWKLP-KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 93 AYTNGSLKTFSLDTTDVI---------STFTGHKSAITVIQYDPLGHRLATGSKDTDIVL 143
+ + + S D T ++ +GH I YD R + S DT I +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 144 WDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHL 203
WD+ + L GH ++ +R + F+VS+A D ++ WDA+ D + + H
Sbjct: 337 WDLENGELXYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAN--DYSRKFSYHH 390
Query: 204 TEVWGVCVMR-EDSYLISGSNDAELKVWNVR 233
T + + D+ L+SGS + + ++N+R
Sbjct: 391 TNLSAITTFYVSDNILVSGSEN-QFNIYNLR 420
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 140/368 (38%), Gaps = 42/368 (11%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQVKIW---NRPSLSCLRTIDTGSYALSVCFVPGDR 938
+GH + V DN + A ++++ N+ L L D G +AL + G
Sbjct: 118 RGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK--YAHGG- 174
Query: 939 HVLV-GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG 997
+LV G+ D + + DI G H+ + + ++ Y ++ +VTG
Sbjct: 175 -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-------YKNIK-YIVTGSR 225
Query: 998 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK------LEEQVLCAR-VSP 1050
D ++ +W+L + D H + HT L R VS
Sbjct: 226 DNTLHVWKLP-------KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSG 278
Query: 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1110
++ D T+ ++ + K L GH + S ++ + S D T+++W
Sbjct: 279 HGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Query: 1111 LDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG 1170
L+ G+ +L H V + K + + + DG ++ WDA+++ R +
Sbjct: 339 LENGELXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGWDANDYSRKFSY-------- 388
Query: 1171 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFVPKTHYF 1229
H + ++ Y S I + ++ L G H ++L D + V F KT
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 447
Query: 1230 FTTSKDGR 1237
KDG+
Sbjct: 448 AAVEKDGQ 455
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 36/193 (18%)
Query: 75 KHEVCQLSPNHDSSQLAVAYTNGS-LKTFSLDTTDVI---------STFTGHKSAIT--- 121
K + QLS HD A+ Y +G L + S D T + F GH S +
Sbjct: 152 KKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLD 210
Query: 122 VIQYDPLGHRLATGSKDTDIVLWDVVAECGL--------HRLSGH------------KGV 161
+++Y + + + TGS+D + +W + E + + L H +G
Sbjct: 211 IVEYKNIKY-IVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269
Query: 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISG 221
+R +S G+ VVS + D + +WD C ++ H ++ E IS
Sbjct: 270 XASVRTVSGHGN-IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 222 SNDAELKVWNVRD 234
S D +++W++ +
Sbjct: 329 SXDTTIRIWDLEN 341
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 47/171 (27%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
+ +L GH I+ + Y + + S+ D I IW
Sbjct: 303 LYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW------------------------- 337
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DLE G+ ++GH+ V +R + S + D +++
Sbjct: 338 ------------------DLENGELXYTLQGHTALVG---LLRLSDKFLVSAAADGSIRG 376
Query: 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQ 525
WD ++ S ++T ++++ ++ +L G +N +++LR+ +V
Sbjct: 377 WDANDYSRKFSYHHT-NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 97/236 (41%), Gaps = 12/236 (5%)
Query: 369 KYHPDGQYIASSGYDRQIFIWSVYGECENIGV-MSGHTGAVMDLKFSTDGCHIFTCSTDQ 427
K PDG + G + IW + I ++ A L S D F+C +D
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487
+AVWDL +++ +GH+ + D G L G D+ TV+ WD R+ Q +
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHD 222
Query: 488 NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYIL 547
T Q+ S+ + T E + G +++++ + Q L H V L + G + +
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFV 281
Query: 548 SNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK 603
S DN + W PY S Q ++L C SV Y+ GS DK
Sbjct: 282 STGKDNLLNAWRT-PYG--------ASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 90/204 (44%), Gaps = 19/204 (9%)
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK-----GHSTFVNSCDPVRR 458
H V + S H++T + VWD+ + ++ SC +
Sbjct: 50 HGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 459 GQLLIASGSDDCTVKVWD---PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515
G LI G + T+ +WD P + +A ++ ++A + ++ + D +I +
Sbjct: 109 GCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 516 WDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSG 575
WDL ++V++ +GH+D + + +S DG+ + + +DNTVR WD+R +
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR---------EGRQL 218
Query: 576 HQHNFEKNLLRCAWSVSGLYVTAG 599
QH+F + + +G ++ G
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVG 242
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 130/342 (38%), Gaps = 56/342 (16%)
Query: 874 RHLRSIHAQGHHSEVRALAFSSDNLALVSACASQVKIW------NRPSLSCLRTIDTGSY 927
RH R I+ H V A+ S+ + + VK+W N+ +S L ++ +Y
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 928 ALSVCFVPGDRHVLVGTKDGRLLIVDIGAG--EILEDIPAHSQELWSVAMLPDQFNPNVY 985
S +P ++VG + L I D+ A I ++ + + +++A+ PD
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS------ 153
Query: 986 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045
+ D ++ +W L ++ R+ T S C
Sbjct: 154 ----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS---------------------C 188
Query: 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--VLSLDMSYDSTLIATGSGD 1103
+S D L LD TV+ + L + L H + SL +A G
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGR---QLQQHDFTSQIFSLGYCPTGEWLAVGMES 245
Query: 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1163
V+V ++ D ++ L HE V + F +F +T KD + W
Sbjct: 246 SNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP--------- 295
Query: 1164 FFISLYGHK--LPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203
+ S++ K VLS D+S D I TGSGD+ V+ + Y
Sbjct: 296 YGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
Query: 372 PDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431
PD + S D I +W ++ + + GHT + S DG ++T D T+
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ 491
WDL +G+++++ ++ + S G+ L A G + V+V K ++ +
Sbjct: 210 WDLREGRQLQQHD-FTSQIFSLGYCPTGEWL-AVGMESSNVEVLHVNKPDKYQLHLHESC 267
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551
V S+ F + ++ G DN + W + + + + S +V +S D YI++ +
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSG 326
Query: 552 DNTVRIWDI 560
D ++++
Sbjct: 327 DKKATVYEV 335
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 101/287 (35%), Gaps = 56/287 (19%)
Query: 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD- 1179
L H + V VT T + +T K G VK WD IS G+K PV LD
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGK-GCVKVWD-------------ISHPGNKSPVSQLDC 93
Query: 1180 -----------MSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKT 1226
+ D + G T+ +W L L + + + P +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 1227 HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQI-----QVVTGGGDKSVKLWQLE 1281
F+ DG + WD N + + + + I ++ TGG D +V+ W L
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL- 212
Query: 1282 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIF 1341
RE + + H S Q+ P + LAV + + V++
Sbjct: 213 -----REGRQL-----QQHDFTS-----------QIFSLGYCPTGEWLAVGMESSNVEVL 251
Query: 1342 FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388
++ + L+ H+ VLSL +Y + D + W YG
Sbjct: 252 HVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 297
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 84/272 (30%), Gaps = 84/272 (30%)
Query: 1211 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA-----------------DNFERIVTLH 1253
L H + V VT T + +T K G VK WD DN+ R L
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL- 105
Query: 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1313
LP ++ GG ++ +W L + +A E T + +
Sbjct: 106 ------LPDGCTLIVGGEASTLSIWDLAAPTPRIKA-ELTSSAPACYAL----------- 147
Query: 1314 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1373
+SPDSK+ D + ++ L GH +D+S D T + T
Sbjct: 148 -------AISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200
Query: 1374 GSGDRTVKVWGL----------------DYGDCHKS------------------------ 1393
G D TV+ W L G C
Sbjct: 201 GGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260
Query: 1394 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1425
L HE V + F +F +T KD + W
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
GQ+ D + PR Q ++N+ V +V ++ V TGG +K+WD+
Sbjct: 21 GQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79
Query: 519 R---TNSVVQKLR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565
S V +L + + L PDG ++ +T+ IWD+ P
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 118 SAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVV 177
S I + Y P G LA G + +++ + V + ++L H+ + ++F + G FV
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHV-NKPDKYQLHLHESCVLSLKF-AYCGKWFV- 281
Query: 178 SSAKDTFVKIWDADTG-DCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNV 232
S+ KD + W G F++ + + V + +D Y+++GS D + V+ V
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKES--SSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG-------QRIKKMKGHSTF 449
++ +SGH+ V L+++ DG H+ + D + VW G Q + +G
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG- 508
V C P + L G+ D +++W+ +++ QV S+ ++ + +++G
Sbjct: 282 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340
Query: 509 -IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE 567
N + +W T + V +L+GH+ V L++SPDG+ + S A D T+R+W P
Sbjct: 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400
Query: 568 R 568
R
Sbjct: 401 R 401
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 12/196 (6%)
Query: 420 IFTCSTDQTLAVWDLEKGQ--RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D ++ +W G ++ +M+ +++S ++ G L A G+ V++WD
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDV 176
Query: 478 RKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTVT 535
+++ + +M +++ +V S+++N + + +G I D+R V L GHS V
Sbjct: 177 QQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234
Query: 536 GLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE-RCVKVMSGHQHNFE-KNLLRCAWSVSG 593
GL +PDG ++ S DN V +W P PGE V + + QH K + C W +
Sbjct: 235 GLRWAPDGRHLASGGNDNLVNVW---PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291
Query: 594 LYVTAGSADKCVYIWD 609
L G++D+ + IW+
Sbjct: 292 LATGGGTSDRHIRIWN 307
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 132/324 (40%), Gaps = 62/324 (19%)
Query: 893 FSSDNLALVSACASQVKIWNRPS---LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRL 949
+SS N+ L A + V +W+ S L L+ G Y SV ++ ++ VGT +
Sbjct: 113 WSSGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 171
Query: 950 LIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1009
+ D+ + L ++ +HS + S++ N Y+ L
Sbjct: 172 QLWDVQQQKRLRNMTSHSARVGSLSW-------NSYI---------------------LS 203
Query: 1010 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA-RVSPDSKLLAVSLLDTTVKIFF 1068
S +R DV ++ H TL Q +C R +PD + LA D V ++
Sbjct: 204 SGSRSGHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258
Query: 1069 ----------LDTFKFFISLYGHKLPVLSLDM-SYDSTLIATGSG--DRTVKVWGLDYGD 1115
L TF H+ V ++ + S ++ATG G DR +++W + G
Sbjct: 259 SAPGEGGWVPLQTFT------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175
C ++ AH V + + P HY S G + + + T+ L GH V
Sbjct: 313 CLSAVDAHSQ-VCSILWSP--HYKELISGHGFAQ--NQLVIWKYPTMAKVAELKGHTSRV 367
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVW 1199
LSL MS D +A+ + D T+++W
Sbjct: 368 LSLTMSPDGATVASAAADETLRLW 391
Score = 53.9 bits (128), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 47/298 (15%)
Query: 1103 DRTVKVWGLDYGDCHKSLLAHE--DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
D +V +W GD + L + + ++ V ++ + +Y + V+ WD +R+
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTG 1219
+ + G +S++S ++++GS + + + H +L H V G
Sbjct: 184 NMTSHSARVG--------SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 235
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFE------RIVTLH---FNPNVYLPLQIQVV-TG 1269
+ + P + + D V W + E + T H + P Q V+ TG
Sbjct: 236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295
Query: 1270 GG--DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327
GG D+ +++W V S + QV SP K
Sbjct: 296 GGTSDRHIRIW----------------------NVCSGACLSAVDAHSQVCSILWSPHYK 333
Query: 1328 LL--AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
L + I+ T L GH VLSL MS D +A+ + D T+++W
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 34 QEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAV 92
+EG +LA G +S +V +WD++ ++ L H A V LS N S L+
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSA--------RVGSLSWN--SYILSS 204
Query: 93 AYTNGSLKTFSLDTTDV-ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151
+G + + + ++T +GH + +++ P G LA+G D + +W G
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264
Query: 152 ----LHRLSGHKGVITDIRFMSQPGHHFVVSSA---KDTFVKIWDADTGDCFKTMAAHLT 204
L + H+G + + + P V+++ D ++IW+ +G C + AH +
Sbjct: 265 GWVPLQTFTQHQGAVKAVAWC--PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-S 321
Query: 205 EVWGVCVMREDSYLISGSNDA--ELKVW 230
+V + LISG A +L +W
Sbjct: 322 QVCSILWSPHYKELISGHGFAQNQLVIW 349
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 375 QYIASSGYDR-QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW- 432
+ I+ G+ + Q+ IW Y + + GHT V+ L S DG + + + D+TL +W
Sbjct: 334 ELISGHGFAQNQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Query: 433 --DLEKGQRIKKMKG 445
+L+ +R ++ K
Sbjct: 393 CFELDPARRREREKA 407
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 176 VVSSAKDTFVKIWDADTGDCFK--TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233
V++ A D V +W A +GD + M + V ++E +YL G++ AE+++W+V+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 234 DRSDI 238
+ +
Sbjct: 178 QQKRL 182
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 86/181 (47%), Gaps = 10/181 (5%)
Query: 397 NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG-------QRIKKMKGHSTF 449
++ +SGH+ V L+++ DG H+ + D + VW G Q + +G
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG- 508
V C P + L G+ D +++W+ +++ QV S+ ++ + +++G
Sbjct: 293 VAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 351
Query: 509 -IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE 567
N + +W T + V +L+GH+ V L++SPDG+ + S A D T+R+W P
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Query: 568 R 568
R
Sbjct: 412 R 412
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 12/197 (6%)
Query: 419 HIFTCSTDQTLAVWDLEKGQ--RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWD 476
++ + D ++ +W G ++ +M+ +++S ++ G L A G+ V++WD
Sbjct: 128 NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWD 186
Query: 477 PRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTV 534
+++ + +M +++ +V S+++N + + +G I D+R V L GHS V
Sbjct: 187 VQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 244
Query: 535 TGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE-RCVKVMSGHQHNFE-KNLLRCAWSVS 592
GL +PDG ++ S DN V +W P PGE V + + QH K + C W +
Sbjct: 245 CGLRWAPDGRHLASGGNDNLVNVW---PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 301
Query: 593 GLYVTAGSADKCVYIWD 609
L G++D+ + IW+
Sbjct: 302 VLATGGGTSDRHIRIWN 318
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 132/324 (40%), Gaps = 62/324 (19%)
Query: 893 FSSDNLALVSACASQVKIWNRPS---LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRL 949
+SS N+ L A + V +W+ S L L+ G Y SV ++ ++ VGT +
Sbjct: 124 WSSGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 182
Query: 950 LIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1009
+ D+ + L ++ +HS + S++ N Y+ L
Sbjct: 183 QLWDVQQQKRLRNMTSHSARVGSLSW-------NSYI---------------------LS 214
Query: 1010 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA-RVSPDSKLLAVSLLDTTVKIFF 1068
S +R DV ++ H TL Q +C R +PD + LA D V ++
Sbjct: 215 SGSRSGHIHHHDVR-----VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 269
Query: 1069 ----------LDTFKFFISLYGHKLPVLSLDM-SYDSTLIATGSG--DRTVKVWGLDYGD 1115
L TF H+ V ++ + S ++ATG G DR +++W + G
Sbjct: 270 SAPGEGGWVPLQTFT------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 323
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175
C ++ AH V + + P HY S G + + + T+ L GH V
Sbjct: 324 CLSAVDAHSQ-VCSILWSP--HYKELISGHGFAQ--NQLVIWKYPTMAKVAELKGHTSRV 378
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVW 1199
LSL MS D +A+ + D T+++W
Sbjct: 379 LSLTMSPDGATVASAAADETLRLW 402
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 111/298 (37%), Gaps = 47/298 (15%)
Query: 1103 DRTVKVWGLDYGDCHKSLLAHE--DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
D +V +W GD + L + + ++ V ++ + +Y + V+ WD +R+
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTG 1219
+ + G +S++S ++++GS + + + H +L H V G
Sbjct: 195 NMTSHSARVG--------SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 246
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFE------RIVTLH---FNPNVYLPLQIQVV-TG 1269
+ + P + + D V W + E + T H + P Q V+ TG
Sbjct: 247 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 306
Query: 1270 GG--DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327
GG D+ +++W V S + QV SP K
Sbjct: 307 GGTSDRHIRIW----------------------NVCSGACLSAVDAHSQVCSILWSPHYK 344
Query: 1328 LL--AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
L + I+ T L GH VLSL MS D +A+ + D T+++W
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 34 QEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAV 92
+EG +LA G +S +V +WD++ ++ L H A V LS N S L+
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSA--------RVGSLSWN--SYILSS 215
Query: 93 AYTNGSLKTFSLDTTDV-ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151
+G + + + ++T +GH + +++ P G LA+G D + +W G
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 275
Query: 152 ----LHRLSGHKGVITDIRFMSQPGHHFVVSSA---KDTFVKIWDADTGDCFKTMAAHLT 204
L + H+G + + + P V+++ D ++IW+ +G C + AH +
Sbjct: 276 GWVPLQTFTQHQGAVKAVAWC--PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-S 332
Query: 205 EVWGVCVMREDSYLISGSNDA--ELKVW 230
+V + LISG A +L +W
Sbjct: 333 QVCSILWSPHYKELISGHGFAQNQLVIW 360
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 375 QYIASSGYDR-QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW- 432
+ I+ G+ + Q+ IW Y + + GHT V+ L S DG + + + D+TL +W
Sbjct: 345 ELISGHGFAQNQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Query: 433 --DLEKGQRIKKMKG 445
+L+ +R ++ K
Sbjct: 404 CFELDPARRREREKA 418
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 176 VVSSAKDTFVKIWDADTGDCFK--TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233
V++ A D V +W A +GD + M + V ++E +YL G++ AE+++W+V+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 234 DRSDI 238
+ +
Sbjct: 189 QQKRL 193
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2
Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 60/140 (42%), Gaps = 40/140 (28%)
Query: 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERT 2230
D +P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 61 DLKLPASFDAREQWPQCP-TIKEIRDQGSCGSCW-------------------------- 93
Query: 2231 LSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA 2290
A A +SDRICI + V +S + L+ T C M C GG A
Sbjct: 94 ------AFGAVEAISDRICIHTNAHVSVEVSAEDLL---TCCGSMCGDG----CNGGYPA 140
Query: 2291 AAWMYWINAGLVDGGDYGTH 2310
AW +W GLV GG Y +H
Sbjct: 141 EAWNFWTRKGLVSGGLYESH 160
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 262 HAIRILGWGVEN-GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 312
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 60/141 (42%), Gaps = 42/141 (29%)
Query: 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERT 2230
D +PE+FDARE+W C I ++ DQG+C SCW
Sbjct: 4 DINLPESFDAREQWSNCP-TIAQIRDQGSCGSCW-------------------------- 36
Query: 2231 LSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSC-TNCTRMHTKTPMSMCMGGDS 2289
A A MSDRICI + G+V +S + L+ C C C GG
Sbjct: 37 ------AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCG--------DGCNGGYP 82
Query: 2290 AAAWMYWINAGLVDGGDYGTH 2310
+ AW +W GLV GG Y +H
Sbjct: 83 SGAWNFWTRKGLVSGGVYNSH 103
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG N C IE ++AG
Sbjct: 205 HAIRILGWGIEN-GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 255
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 10/172 (5%)
Query: 396 ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG-------QRIKKMKGHST 448
++ +SGH+ V L+++ DG H+ + D + VW G Q + +G
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 449 FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG 508
V C P + L G+ D +++W+ +++ QV S+ ++ + +++G
Sbjct: 201 AVAWC-PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 259
Query: 509 --IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIW 558
N + +W T + V +L+GH+ V L++SPDG+ + S A D T+R+W
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 96/197 (48%), Gaps = 8/197 (4%)
Query: 420 IFTCSTDQTLAVWDLEKGQ--RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+ + D ++ +W G ++ +M+ +++S ++ G L A G+ V++WD
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL-AVGTSSAEVQLWDV 96
Query: 478 RKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTVT 535
+++ + +M +++ +V S+++N + + +G I D+R V L GHS V
Sbjct: 97 QQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 154
Query: 536 GLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLY 595
GL +PDG ++ S DN V +W P G ++ + HQ K + C W + L
Sbjct: 155 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLA 213
Query: 596 VTAGSADKCVYIWDTTT 612
G++D+ + IW+ +
Sbjct: 214 TGGGTSDRHIRIWNVCS 230
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 131/324 (40%), Gaps = 62/324 (19%)
Query: 893 FSSDNLALVSACASQVKIWNRPS---LSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRL 949
+SS N+ L A + V +W+ S L L+ G Y SV ++ ++ VGT +
Sbjct: 33 WSSGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEV 91
Query: 950 LIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1009
+ D+ + L ++ +HS + S++ N Y+ L
Sbjct: 92 QLWDVQQQKRLRNMTSHSARVGSLSW-------NSYI---------------------LS 123
Query: 1010 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA-RVSPDSKLLAVSLLDTTVKIFF 1068
S +R DV + H TL Q +C R +PD + LA D V ++
Sbjct: 124 SGSRSGHIHHHDVRVAEH-----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 178
Query: 1069 ----------LDTFKFFISLYGHKLPVLSLDM-SYDSTLIATGSG--DRTVKVWGLDYGD 1115
L TF H+ V ++ + S ++ATG G DR +++W + G
Sbjct: 179 SAPGEGGWVPLQTFT------QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 232
Query: 1116 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175
C ++ AH V + + P HY S G + + + T+ L GH V
Sbjct: 233 CLSAVDAHSQ-VCSILWSP--HYKELISGHGFAQ--NQLVIWKYPTMAKVAELKGHTSRV 287
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVW 1199
LSL MS D +A+ + D T+++W
Sbjct: 288 LSLTMSPDGATVASAAADETLRLW 311
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 111/288 (38%), Gaps = 27/288 (9%)
Query: 1103 DRTVKVWGLDYGDCHKSLLAHE--DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160
D +V +W GD + L + + ++ V ++ + +Y + V+ WD +R+
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTG 1219
++ H V SL S++S ++++GS + + + H +L H V G
Sbjct: 104 ------NMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155
Query: 1220 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKL-- 1277
+ + P + + D V W + E ++PLQ G K+V
Sbjct: 156 LRWAPDGRHLASGGNDNLVNVWPSAPGE---------GGWVPLQTFTQHQGAVKAVAWCP 206
Query: 1278 WQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL--AVSLLD 1335
WQ +++ + R V S + QV SP K L
Sbjct: 207 WQSNVLATGGGTSDRHI---RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 1336 TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW 1383
+ I+ T L GH VLSL MS D +A+ + D T+++W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 92/208 (44%), Gaps = 26/208 (12%)
Query: 34 QEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAV 92
+EG +LA G +S +V +WD++ ++ L H A V LS N S L+
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQ--QQKRLRNMTSHSA--------RVGSLSWN--SYILSS 124
Query: 93 AYTNGSLKTFSLDTTDV-ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151
+G + + + ++T +GH + +++ P G LA+G D + +W G
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 184
Query: 152 ----LHRLSGHKGVITDIRFMSQPGHHFVVSSA---KDTFVKIWDADTGDCFKTMAAHLT 204
L + H+G + + + P V+++ D ++IW+ +G C + AH +
Sbjct: 185 GWVPLQTFTQHQGAVKAVAWC--PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-S 241
Query: 205 EVWGVCVMREDSYLISGSNDA--ELKVW 230
+V + LISG A +L +W
Sbjct: 242 QVCSILWSPHYKELISGHGFAQNQLVIW 269
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 375 QYIASSGYDR-QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432
+ I+ G+ + Q+ IW Y + + GHT V+ L S DG + + + D+TL +W
Sbjct: 254 ELISGHGFAQNQLVIWK-YPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 176 VVSSAKDTFVKIWDADTGDCFK--TMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233
V++ A D V +W A +GD + M + V ++E +YL G++ AE+++W+V+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 234 DR 235
+
Sbjct: 98 QQ 99
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 59/138 (42%), Gaps = 42/138 (30%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FDARE+W C I ++ DQG+C SCW
Sbjct: 1 LPESFDAREQWSNCP-TIAQIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSC-TNCTRMHTKTPMSMCMGGDSAAA 2292
A A MSDRICI + G+V +S + L+ C C C GG + A
Sbjct: 31 ---AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCG--------DGCNGGYPSGA 79
Query: 2293 WMYWINAGLVDGGDYGTH 2310
W +W GLV GG Y +H
Sbjct: 80 WNFWTRKGLVSGGVYNSH 97
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG N C IE ++AG
Sbjct: 199 HAIRILGWGIEN-GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 249
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 361 HGGEIFCSKYHPDGQYIASS---GYDRQIFIWSVY-------GECENIGVMSGHTGAVMD 410
H GE+ ++Y P +I ++ D +F ++ + GEC + GH
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 411 LKFSTD-GCHIFTCSTDQTLAVWDLEKGQRIKKM-------KGHSTFVNSCDPVRRGQLL 462
L ++++ H+ + S D T+ +WD+ G + K+ GHS V + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAFNDTAECVL-TGGIDNDIKMWD 517
S +DD + +WD R + + +T +V ++FN +E +L TG D + +WD
Sbjct: 245 FGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 518 LRTNSV-VQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDI 560
LR + + H D + + SP IL S+ D + +WD+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R++ P L++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ + +S I S TD+ L VWDL K
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHKS---LLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQ 1150
+L + + D+ + +W K + AH V ++F P + + T S D V
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD N + + LH F S HK + + S ++ T++A+ DR + VW L +S
Sbjct: 303 WDLRNLK--LKLHTFES---HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 1210 LLAHEDSVTGVTFVPKTH 1227
ED + F+ H
Sbjct: 358 AEDAEDGPPELLFIHGGH 375
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTL---IATGSGDRTVKVWGLDYG-------DCHKSLLAHED 1125
+ L GH+ L S++S L + + S D TV +W ++ G D H
Sbjct: 173 LRLRGHQKEGYGL--SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
Query: 1126 SVTGVTF-VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
V V + + F + + D ++ WD + H + + ++ LS + Y
Sbjct: 231 VVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLSFN-PYSE 288
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
++ATGS D+TV +W L + +H+D + V + P +S D R+ WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 115 GHKSAITVIQYDPLGHR-LATGSKDTDIVLWDVVA-ECGLHRLSGHKGVITDIRFMSQPG 172
H + + + ++P LATGS D + LWD+ + LH HK I + + S
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW-SPHN 331
Query: 173 HHFVVSSAKDTFVKIWD 189
+ SS D + +WD
Sbjct: 332 ETILASSGTDRRLNVWD 348
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1042 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMS-YDSTLIA 1098
+V C +P S+ +LA D TV ++ L K + + HK + + S ++ T++A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
+ DR + VW L +S ED + F+ H
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1316 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMS-YDSTLIA 1372
+V C +P S+ +LA D TV ++ L K + + HK + + S ++ T++A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
+ DR + VW L +S ED + F+ H
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 1366 YDSTLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVK 1423
Y ++ATGS D+TV +W L + +H+D + V + P +S D R+
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 1424 QWD 1426
WD
Sbjct: 346 VWD 348
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 54/137 (39%), Gaps = 41/137 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
IP +FD+R++WP+CK I + DQ C SCW
Sbjct: 3 IPSSFDSRKKWPRCKS-IATIRDQSRCGSCW----------------------------- 32
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A MSDR CIQS G+ LS L+ C +C C GG AW
Sbjct: 33 ---AFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGL--------GCEGGILGPAW 81
Query: 2294 MYWINAGLVDGGDYGTH 2310
YW+ G+V G H
Sbjct: 82 DYWVKEGIVTGSSKENH 98
Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/52 (53%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++IIGWG ++ PYWL NS+N+ WGE G F+I RG + CSIE V AG
Sbjct: 201 HAIRIIGWGVENK-APYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAG 251
Score = 34.7 bits (78), Expect = 0.73, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 1548 ERGQKKLIASDCPNGSKVYYVNNSTTDIQKEIMQHGPVQAKF 1589
++ K D G Y V N IQKEIM++GPV+A F
Sbjct: 135 QKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGF 176
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 361 HGGEIFCSKYHPDGQYIASS---GYDRQIFIWSVY-------GECENIGVMSGHTGAVMD 410
H GE+ ++Y P +I ++ D +F ++ + GEC + GH
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYG 184
Query: 411 LKFSTD-GCHIFTCSTDQTLAVWDLEKGQRIKKM-------KGHSTFVNSCDPVRRGQLL 462
L ++++ H+ + S D T+ +WD+ G + K+ GHS V + L
Sbjct: 185 LSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESL 244
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAFNDTAECVL-TGGIDNDIKMWD 517
S +DD + +WD R + + +T +V ++FN +E +L TG D + +WD
Sbjct: 245 FGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 518 LRTNSV-VQKLRGHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDI 560
LR + + H D + + SP IL S+ D + +WD+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R++ P L++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ + +S I S TD+ L VWDL K
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 17/180 (9%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTL---IATGSGDRTVKVWGLDYG-------DCHKSLLAHED 1125
+ L GH+ L S++S L + + S D TV +W ++ G D H
Sbjct: 173 LRLRGHQKEGYGL--SWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
Query: 1126 SVTGVTF-VPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
V V + + F + + D ++ WD + H + + ++ LS + Y
Sbjct: 231 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLSFN-PYSE 288
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
++ATGS D+TV +W L + +H+D + V + P +S D R+ WD
Sbjct: 289 FILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHKS---LLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQ 1150
+L + + D+ + +W K + AH V ++F P + + T S D V
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 302
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD N + + LH F S HK + + S ++ T++A+ DR + VW L +S
Sbjct: 303 WDLRNLK--LKLHTFES---HKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQS 357
Query: 1210 LLAHEDSVTGVTFVPKTH 1227
ED + F+ H
Sbjct: 358 AEDAEDGPPELLFIHGGH 375
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 115 GHKSAITVIQYDPLGHR-LATGSKDTDIVLWDVVA-ECGLHRLSGHKGVITDIRFMSQPG 172
H + + + ++P LATGS D + LWD+ + LH HK I + + S
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW-SPHN 331
Query: 173 HHFVVSSAKDTFVKIWD 189
+ SS D + +WD
Sbjct: 332 ETILASSGTDRRLNVWD 348
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1042 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMS-YDSTLIA 1098
+V C +P S+ +LA D TV ++ L K + + HK + + S ++ T++A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
+ DR + VW L +S ED + F+ H
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1316 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFISLY-GHKLPVLSLDMS-YDSTLIA 1372
+V C +P S+ +LA D TV ++ L K + + HK + + S ++ T++A
Sbjct: 277 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILA 336
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
+ DR + VW L +S ED + F+ H
Sbjct: 337 SSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 375
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 1366 YDSTLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVK 1423
Y ++ATGS D+TV +W L + +H+D + V + P +S D R+
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 1424 QWD 1426
WD
Sbjct: 346 VWD 348
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 40/137 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 3 LPASFDAREQWPQCP-TIKEIRDQGSCGSCW----------------------------- 32
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A +SDRICI + V +S + L+ T C M C GG A AW
Sbjct: 33 ---AFGAVEAISDRICIHTNAHVSVEVSAEDLL---TCCGSMCGDG----CNGGYPAEAW 82
Query: 2294 MYWINAGLVDGGDYGTH 2310
+W GLV GG Y +H
Sbjct: 83 NFWTRKGLVSGGLYESH 99
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 201 HAIRILGWGVEN-GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 251
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 40/137 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 1 LPASFDAREQWPQCP-TIKEIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A +SDRICI + V +S + L+ T C M C GG A AW
Sbjct: 31 ---AFGAVEAISDRICIHTNAHVSVEVSAEDLL---TCCGSMCGDG----CNGGYPAEAW 80
Query: 2294 MYWINAGLVDGGDYGTH 2310
+W GLV GG Y +H
Sbjct: 81 NFWTRKGLVSGGLYESH 97
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 199 HAIRILGWGVEN-GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 249
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 59/137 (43%), Gaps = 40/137 (29%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 2 LPASFDAREQWPQCP-TIKEIRDQGSCGSCW----------------------------- 31
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A +SDRICI + V +S + L+ T C M C GG A AW
Sbjct: 32 ---AFGAVEAISDRICIHTNAHVSVEVSAEDLL---TCCGSMCGDG----CNGGYPAEAW 81
Query: 2294 MYWINAGLVDGGDYGTH 2310
+W GLV GG Y +H
Sbjct: 82 NFWTRKGLVSGGLYESH 98
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 200 HAIRILGWGVEN-GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 250
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 374 GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLA 430
G+ +A+ D+ I I+ V GE I ++GH G V +D G + +CS D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 431 VWDLEKGQ--RIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKKN----- 481
+W E G+ +I HS VNS P G LL+ + SD V K+N
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV--EFKENGTTSP 138
Query: 482 -----QAVSMNNTYQVTSV-----AFNDTAEC--VLTGGIDNDIKMW----DLRTNSVVQ 525
A+ +N+ + N T E +TGG DN +K+W D +T +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 526 KLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIW-DIRPYVPGERCVKVMSGHQHNFE 581
L GHSD V ++ SP SY+ S + D T IW P ++ + + F
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL----KEEKFP 254
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIW 608
L R +WS+SG + D V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL--EKGQRIKKMKGHSTFVNSCDPVR 457
+ + H + D G + TCS+D+T+ ++++ E + I + GH V D
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 458 -RGQLLIASGSDDCTVKVW---DPRKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDN 511
+ ++AS S D V +W + R AV ++ V SV + ++ +L D
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 512 DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSP-----DGSY--------ILSNAMDNTVR 556
+ + + + N + H+ V S +P DG + ++ DN V+
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 557 IW----DIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGL---YVTAGSADKCVYIW 608
IW D + YV + GH + +R AWS + L Y+ + S D+ IW
Sbjct: 184 IWKYNSDAQTYV----LESTLEGHS-----DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Query: 609 DTTTRRIAYK 618
+ +K
Sbjct: 235 TQDNEQGPWK 244
Score = 38.1 bits (87), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 81/190 (42%), Gaps = 31/190 (16%)
Query: 529 GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE--RCVKVMSGHQHNFEKNLLR 586
H++ + L G + + + D T++I++ V GE + + ++GH E + R
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFE----VEGETHKLIDTLTGH----EGPVWR 58
Query: 587 CAWSVS--GLYVTAGSADKCVYIWDTTTRR---IAYKLPGHNGSVNDVQFHPKE--PIIM 639
W+ G + + S D V IW R IA H+ SVN VQ+ P E P+++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLL 117
Query: 640 SASSDKTIYLGE-------SPLHCDKAGSILRSGKGRVHTMVND------KHRQILCCHG 686
ASSD + + E SP+ D + S T+ D K + G
Sbjct: 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 687 NDNVVDLFYF 696
DN+V ++ +
Sbjct: 178 ADNLVKIWKY 187
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFV-PKTHYFFTT-SK 1418
+ Y +AT S D+T+K++ ++ G+ HK +L HE V V + PK + S
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
Query: 1419 DGRVKQWDADN--FERIVTLHICSCSLNSPMNSVHLNSCPALEASND 1463
DG+V W +N + +I + S S+NS + H L AS+D
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 26/139 (18%)
Query: 1167 SLYGHKLPVLSLDMSYDS--TLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTF 1222
+L GH+ PV +D ++ T++A+ S D V +W + G + + H SV V +
Sbjct: 48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 107
Query: 1223 VPKTH--YFFTTSKDGRVK----QWDADNFERIVTLH---FNPNVYLPLQIQ-------- 1265
P + S DG+V + + I+ H N + P I+
Sbjct: 108 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167
Query: 1266 -----VVTGGGDKSVKLWQ 1279
VTGG D VK+W+
Sbjct: 168 KESRKFVTGGADNLVKIWK 186
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG--LHRLSGHKGVITDIRFMSQPG 172
H I D G RLAT S D I +++V E + L+GH+G + + +
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 173 HHFVVSSAKDTFVKIWDADTGDCFKTMAAH 202
+ S + D V IW + G + +A H
Sbjct: 67 GTILASCSYDGKVLIWKEENGR-WSQIAVH 95
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 42/141 (29%)
Query: 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERT 2230
D +PE+FDARE+W C I ++ DQG+C S W
Sbjct: 60 DINLPESFDAREQWSNCP-TIAQIRDQGSCGSSW-------------------------- 92
Query: 2231 LSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSC-TNCTRMHTKTPMSMCMGGDS 2289
A A MSDRICI + G+V +S + L+ C C C GG
Sbjct: 93 ------AFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCG--------DGCNGGYP 138
Query: 2290 AAAWMYWINAGLVDGGDYGTH 2310
+ AW +W GLV GG Y +H
Sbjct: 139 SGAWNFWTRKGLVSGGVYNSH 159
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG N C IE ++AG
Sbjct: 261 HAIRILGWGIEN-GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIVAG 311
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 374 GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLA 430
G+ +A+ D+ I I+ V GE I ++GH G V +D G + +CS D +
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 431 VWDLEKGQ--RIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKKN----- 481
+W E G+ +I HS VNS P G LL+ + SD V K+N
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV--EFKENGTTSP 140
Query: 482 -----QAVSMNNTYQVTSV-----AFNDTAEC--VLTGGIDNDIKMW----DLRTNSVVQ 525
A+ +N+ + N T E +TGG DN +K+W D +T +
Sbjct: 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200
Query: 526 KLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIW-DIRPYVPGERCVKVMSGHQHNFE 581
L GHSD V ++ SP SY+ S + D T IW P ++ + + F
Sbjct: 201 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL----KEEKFP 256
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIW 608
L R +WS+SG + D V +W
Sbjct: 257 DVLWRASWSLSGNVLALSGGDNKVTLW 283
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 31/197 (15%)
Query: 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE--RCVKVMSGHQHN 579
S+V H++ + L G + + + D T++I+++ GE + + ++GH
Sbjct: 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLIDTLTGH--- 54
Query: 580 FEKNLLRCAWSVS--GLYVTAGSADKCVYIWDTTTRR---IAYKLPGHNGSVNDVQFHPK 634
E + R W+ G + + S D V IW R IA H+ SVN VQ+ P
Sbjct: 55 -EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPH 112
Query: 635 E--PIIMSASSDKTIYLGE-------SPLHCDKAGSILRSGKGRVHTMVND------KHR 679
E P+++ ASSD + + E SP+ D + S T+ D K
Sbjct: 113 EYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172
Query: 680 QILCCHGNDNVVDLFYF 696
+ G DN+V ++ +
Sbjct: 173 RKFVTGGADNLVKIWKY 189
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL--EKGQRIKKMKGHSTFVNSCDPVR 457
+ + H + D G + TCS+D+T+ ++++ E + I + GH V D
Sbjct: 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 458 -RGQLLIASGSDDCTVKVW---DPRKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDN 511
+ ++AS S D V +W + R AV ++ V SV + ++ +L D
Sbjct: 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125
Query: 512 DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSP-----DGSY--------ILSNAMDNTVR 556
+ + + + N + H+ V S +P DG + ++ DN V+
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 557 IW----DIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGL---YVTAGSADKCVYIW 608
IW D + YV + GH + +R AWS + L Y+ + S D+ IW
Sbjct: 186 IWKYNSDAQTYV----LESTLEGHS-----DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Query: 609 DTTTRRIAYK 618
+ +K
Sbjct: 237 TQDNEQGPWK 246
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFV-PKTHYFFTT-SK 1418
+ Y +AT S D+T+K++ ++ G+ HK +L HE V V + PK + S
Sbjct: 19 LDYYGKRLATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77
Query: 1419 DGRVKQWDADN--FERIVTLHICSCSLNSPMNSVHLNSCPALEASND 1463
DG+V W +N + +I + S S+NS + H L AS+D
Sbjct: 78 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 26/139 (18%)
Query: 1167 SLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTF 1222
+L GH+ PV +D ++ T++A+ S D V +W + G + + H SV V +
Sbjct: 50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQW 109
Query: 1223 VPKTH--YFFTTSKDGRVK----QWDADNFERIVTLH---FNPNVYLPLQIQ-------- 1265
P + S DG+V + + I+ H N + P I+
Sbjct: 110 APHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169
Query: 1266 -----VVTGGGDKSVKLWQ 1279
VTGG D VK+W+
Sbjct: 170 KESRKFVTGGADNLVKIWK 188
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 374 GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLA 430
G+ +A+ D+ I I+ V GE I ++GH G V +D G + +CS D +
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 431 VWDLEKGQ--RIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKKN----- 481
+W E G+ +I HS VNS P G LL+ + SD V K+N
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV--EFKENGTTSP 138
Query: 482 -----QAVSMNNTYQVTSV-----AFNDTAEC--VLTGGIDNDIKMW----DLRTNSVVQ 525
A+ +N+ + N T E +TGG DN +K+W D +T +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 526 KLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIW-DIRPYVPGERCVKVMSGHQHNFE 581
L GHSD V ++ SP SY+ S + D T IW P ++ + + F
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL----KEEKFP 254
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIW 608
L R +WS+SG + D V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL--EKGQRIKKMKGHSTFVNSCDPVR 457
+ + H + D G + TCS+D+T+ ++++ E + I + GH V D
Sbjct: 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 458 -RGQLLIASGSDDCTVKVW---DPRKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDN 511
+ ++AS S D V +W + R AV ++ V SV + ++ +L D
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123
Query: 512 DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSP-----DGSY--------ILSNAMDNTVR 556
+ + + + N + H+ V S +P DG + ++ DN V+
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 557 IW----DIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGL---YVTAGSADKCVYIW 608
IW D + YV + GH + +R AWS + L Y+ + S D+ IW
Sbjct: 184 IWKYNSDAQTYV----LESTLEGHS-----DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Query: 609 DTTTRRIAYK 618
+ +K
Sbjct: 235 TQDNEQGPWK 244
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 31/190 (16%)
Query: 529 GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE--RCVKVMSGHQHNFEKNLLR 586
H++ + L G + + + D T++I+++ GE + + ++GH E + R
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE----GETHKLIDTLTGH----EGPVWR 58
Query: 587 CAWSVS--GLYVTAGSADKCVYIWDTTTRR---IAYKLPGHNGSVNDVQFHPKE--PIIM 639
W+ G + + S D V IW R IA H+ SVN VQ+ P E P+++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPLLL 117
Query: 640 SASSDKTIYLGE-------SPLHCDKAGSILRSGKGRVHTMVND------KHRQILCCHG 686
ASSD + + E SP+ D + S T+ D K + G
Sbjct: 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 687 NDNVVDLFYF 696
DN+V ++ +
Sbjct: 178 ADNLVKIWKY 187
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFV-PKTHYFFTT-SK 1418
+ Y +AT S D+T+K++ ++ G+ HK +L HE V V + PK + S
Sbjct: 17 LDYYGKRLATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
Query: 1419 DGRVKQWDADN--FERIVTLHICSCSLNSPMNSVHLNSCPALEASND 1463
DG+V W +N + +I + S S+NS + H L AS+D
Sbjct: 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 1156 FERIVTLHFFI-SLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLL- 1211
FE H I +L GH+ PV +D ++ T++A+ S D V +W + G + +
Sbjct: 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH 95
Query: 1212 -AHEDSVTGVTFVPKTH--YFFTTSKDGRVK----QWDADNFERIVTLH---FNPNVYLP 1261
H SV V + P + S DG+V + + I+ H N + P
Sbjct: 96 AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 1262 LQIQ-------------VVTGGGDKSVKLWQ 1279
I+ VTGG D VK+W+
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 59/140 (42%), Gaps = 40/140 (28%)
Query: 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERT 2230
D +P +FDARE+WPQC I ++ DQG+C S W
Sbjct: 4 DLKLPASFDAREQWPQCP-TIKEIRDQGSCGSAW-------------------------- 36
Query: 2231 LSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA 2290
A A +SDRICI + V +S + L+ T C M C GG A
Sbjct: 37 ------AFGAVEAISDRICIHTNAHVSVEVSAEDLL---TCCGSMCGDG----CNGGYPA 83
Query: 2291 AAWMYWINAGLVDGGDYGTH 2310
AW +W GLV GG Y +H
Sbjct: 84 EAWNFWTRKGLVSGGLYESH 103
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 205 HAIRILGWGVEN-GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 255
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 114/267 (42%), Gaps = 38/267 (14%)
Query: 374 GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLA 430
G+ +A+ D+ I I+ V GE I ++GH G V +D G + +CS D +
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 431 VWDLEKGQ--RIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKKN----- 481
+W E G+ +I HS VNS P G +L+ + SD V K+N
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV--EFKENGTTSP 138
Query: 482 -----QAVSMNNTYQVTSV-----AFNDTAEC--VLTGGIDNDIKMW----DLRTNSVVQ 525
A+ +N+ + N T E +TGG DN +K+W D +T +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 526 KLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIW-DIRPYVPGERCVKVMSGHQHNFE 581
L GHSD V ++ SP SY+ S + D T IW P ++ + + F
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL----KEEKFP 254
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIW 608
L R +WS+SG + D V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 101/250 (40%), Gaps = 40/250 (16%)
Query: 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL--EKGQRIKKMKGHSTFVNSCDPVR 457
+ + H + D G + TCS+D+T+ ++++ E + I + GH V D
Sbjct: 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 458 -RGQLLIASGSDDCTVKVW---DPRKKNQAVSMNNTYQVTSVAF--NDTAECVLTGGIDN 511
+ ++AS S D V +W + R AV ++ V SV + ++ +L D
Sbjct: 64 PKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG 123
Query: 512 DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSP-----DGSY--------ILSNAMDNTVR 556
+ + + + N + H+ V S +P DG + ++ DN V+
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 557 IW----DIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGL---YVTAGSADKCVYIW 608
IW D + YV + GH + +R AWS + L Y+ + S D+ IW
Sbjct: 184 IWKYNSDAQTYV----LESTLEGHS-----DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Query: 609 DTTTRRIAYK 618
+ +K
Sbjct: 235 TQDNEQGPWK 244
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFV-PKTHYFFTT-SK 1418
M Y +AT S D+T+K++ ++ G+ HK +L HE V V + PK + S
Sbjct: 17 MDYYGKRMATCSSDKTIKIFEVE-GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75
Query: 1419 DGRVKQWDADN--FERIVTLHICSCSLNSPMNSVHLNSCPALEASND 1463
DG+V W +N + +I + S S+NS + H L AS+D
Sbjct: 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 31/190 (16%)
Query: 529 GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE--RCVKVMSGHQHNFEKNLLR 586
H++ + + G + + + D T++I+++ GE + + ++GH E + R
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVE----GETHKLIDTLTGH----EGPVWR 58
Query: 587 CAWSVS--GLYVTAGSADKCVYIWDTTTRR---IAYKLPGHNGSVNDVQFHPKE--PIIM 639
W+ G + + S D V IW R IA H+ SVN VQ+ P E P+++
Sbjct: 59 VDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPMLL 117
Query: 640 SASSDKTIYLGE-------SPLHCDKAGSILRSGKGRVHTMVND------KHRQILCCHG 686
ASSD + + E SP+ D + S T+ D K + G
Sbjct: 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 177
Query: 687 NDNVVDLFYF 696
DN+V ++ +
Sbjct: 178 ADNLVKIWKY 187
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 1156 FERIVTLHFFI-SLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLL- 1211
FE H I +L GH+ PV +D ++ T++A+ S D V +W + G + +
Sbjct: 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVH 95
Query: 1212 -AHEDSVTGVTFVPKTH--YFFTTSKDGRVK----QWDADNFERIVTLH---FNPNVYLP 1261
H SV V + P + S DG+V + + I+ H N + P
Sbjct: 96 AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 1262 LQIQ-------------VVTGGGDKSVKLWQ 1279
I+ VTGG D VK+W+
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 51/299 (17%)
Query: 390 SVYGECENIGVMSGHTGAVMDLKF-STDGCHIFTCSTDQTLAVWDLEKG----------Q 438
SV G+ E I + H G V ++ + C I T + + V+D K Q
Sbjct: 114 SVCGKIE-IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ 172
Query: 439 RIKKMKGHST--FVNSCDPVRRGQLLIASGSDDCTVKVWD---PRKKNQAVSMNNTYQVT 493
+++GH + S +P G LL S SDD T+ +WD K+++ + N +
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLL--SASDDHTICLWDINATPKEHRVIDAKNIFTGH 230
Query: 494 SVAFNDTAECVLT----GGIDNDIKM--WDLRTNSVVQK---LRGHSDTVTGLSLSPDGS 544
+ D A +L G + +D K+ WD R N+ + + H+ V LS +P
Sbjct: 231 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 545 YILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-D 602
+IL+ + D TV +WD+R +K+ S H E + + WS + A S D
Sbjct: 291 FILATGSADKTVALWDLR-----NLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTD 343
Query: 603 KCVYIWDTTT--------------RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+ +++WD + + + GH ++D ++P EP I+ + S+ I
Sbjct: 344 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 402
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 354 PIMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTG 406
P + L GH E + ++P+ Y+ S+ D I +W + + + +GHT
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKK---MKGHSTFVNSCDPVRRGQLL 462
V D+ + +F + + DQ L +WD K + H+ VN + +
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTY--QVTSVAFNDTAECVL-TGGIDNDIKMWDLR 519
+A+GS D TV +WD R + ++ ++ V ++ E +L + G D + +WDL
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 352
Query: 520 TNSVVQKLR--------------GHSDTVTGLSLSPDGSYIL-SNAMDNTVRIW------ 558
Q GH+ ++ S +P+ +I+ S + DN +++W
Sbjct: 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412
Query: 559 --DIRPYVPG 566
D P +P
Sbjct: 413 YNDEEPEIPA 422
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R +N P ++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ +++S I S TD+ L VWDL K
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 115 GHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRL-------SGHKGVITDIR 166
GH+ + ++P L L + S D I LWD+ A HR+ +GH V+ D+
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 167 FMSQPGHHFVVSS-----AKDTFVKIWDADTGDCFK---TMAAHLTEVWGVCVMREDSYL 218
+ H + S A D + IWD + K T+ AH EV + ++
Sbjct: 239 W------HLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 219 IS-GSNDAELKVWNVRD 234
++ GS D + +W++R+
Sbjct: 293 LATGSADKTVALWDLRN 309
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQ 1150
+L + + D+ + +W + K ++ AH V ++F P + + T S D V
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 304
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD N + + LH F S HK + + S ++ T++A+ DR + VW L +S
Sbjct: 305 WDLRNLK--LKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Query: 1210 LLAHEDSVTGVTFVPKTH 1227
ED + F+ H
Sbjct: 360 TEDAEDGPPELLFIHGGH 377
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTL---IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132
+ L GH+ L S++ L + + S D T+ +W ++ ++ ++ TG T
Sbjct: 175 LRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 1133 VPK--------THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
V + F + + D ++ WD N H + + ++ LS + Y
Sbjct: 233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFN-PYSE 290
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
++ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 291 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 1252 LHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
L +NPN L +++ D ++ LW + + K++ H +++
Sbjct: 187 LSWNPN----LNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHT--AVVEDVAW 239
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTL 1370
L + L V+ D KL+ + DT +T K ++ H V L + Y +
Sbjct: 240 HLLHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 1371 IATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1426
+ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039
+NPN L +++ D ++ LW + + K++ H +++ L
Sbjct: 189 WNPN----LNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHT--AVVEDVAWHL 241
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTLIA 1098
+ L V+ D KL+ + DT +T K ++ H V L + Y ++A
Sbjct: 242 LHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFILA 294
Query: 1099 TGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1152
TGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 295 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1042 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1098
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
+ DR + VW L +S ED + F+ H
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1316 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1372
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
+ DR + VW L +S ED + F+ H
Sbjct: 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 51/299 (17%)
Query: 390 SVYGECENIGVMSGHTGAVMDLKF-STDGCHIFTCSTDQTLAVWDLEKG----------Q 438
SV G+ E I + H G V ++ + C I T + + V+D K Q
Sbjct: 116 SVCGKIE-IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ 174
Query: 439 RIKKMKGHST--FVNSCDPVRRGQLLIASGSDDCTVKVWD---PRKKNQAVSMNNTYQVT 493
+++GH + S +P G LL S SDD T+ +WD K+++ + N +
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLL--SASDDHTICLWDINATPKEHRVIDAKNIFTGH 232
Query: 494 SVAFNDTAECVLT----GGIDNDIKM--WDLRTNSVVQK---LRGHSDTVTGLSLSPDGS 544
+ D A +L G + +D K+ WD R N+ + + H+ V LS +P
Sbjct: 233 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 545 YILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-D 602
+IL+ + D TV +WD+R +K+ S H E + + WS + A S D
Sbjct: 293 FILATGSADKTVALWDLR-----NLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTD 345
Query: 603 KCVYIWDTTT--------------RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+ +++WD + + + GH ++D ++P EP I+ + S+ I
Sbjct: 346 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 404
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 37/250 (14%)
Query: 354 PIMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTG 406
P + L GH E + ++P+ Y+ S+ D I +W + + + +GHT
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKK---MKGHSTFVNSCDPVRRGQLL 462
V D+ + +F + + DQ L +WD K + H+ VN + +
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTY--QVTSVAFNDTAECVL-TGGIDNDIKMWDLR 519
+A+GS D TV +WD R + ++ ++ V ++ E +L + G D + +WDL
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 354
Query: 520 TNSVVQKLR--------------GHSDTVTGLSLSPDGSYIL-SNAMDNTVRIW------ 558
Q GH+ ++ S +P+ +I+ S + DN +++W
Sbjct: 355 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 414
Query: 559 --DIRPYVPG 566
D P +P
Sbjct: 415 YNDEEPEIPA 424
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R +N P ++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ +++S I S TD+ L VWDL K
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 30/219 (13%)
Query: 33 NQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAV 92
N++G F G+ I ++++ + GE + A +P + +P+ D L
Sbjct: 106 NEKGEFGGFGSVCGKIEIEIKINHE-----GEVNRARYMPQNACVIATKTPSSDV--LVF 158
Query: 93 AYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECG 151
YT K GH+ + ++P L L + S D I LWD+ A
Sbjct: 159 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 218
Query: 152 LHRL-------SGHKGVITDIRFMSQPGHHFVVSS-----AKDTFVKIWDADTGDCFK-- 197
HR+ +GH V+ D+ + H + S A D + IWD + K
Sbjct: 219 EHRVIDAKNIFTGHTAVVEDVAW------HLLHESLFGSVADDQKLMIWDTRNNNTSKPS 272
Query: 198 -TMAAHLTEVWGVCVMREDSYLIS-GSNDAELKVWNVRD 234
T+ AH EV + ++++ GS D + +W++R+
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
Score = 38.9 bits (89), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQ 1150
+L + + D+ + +W + K ++ AH V ++F P + + T S D V
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 306
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD N + + LH F S HK + + S ++ T++A+ DR + VW L +S
Sbjct: 307 WDLRNLK--LKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 361
Query: 1210 LLAHEDSVTGVTFVPKTH 1227
ED + F+ H
Sbjct: 362 TEDAEDGPPELLFIHGGH 379
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTL---IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132
+ L GH+ L S++ L + + S D T+ +W ++ ++ ++ TG T
Sbjct: 177 LRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 1133 VPK--------THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
V + F + + D ++ WD N H + + ++ LS + Y
Sbjct: 235 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFN-PYSE 292
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
++ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 293 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 1252 LHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
L +NPN L +++ D ++ LW + + K++ H +++
Sbjct: 189 LSWNPN----LNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHT--AVVEDVAW 241
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTL 1370
L + L V+ D KL+ + DT +T K ++ H V L + Y +
Sbjct: 242 HLLHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFI 294
Query: 1371 IATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1426
+ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 295 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039
+NPN L +++ D ++ LW + + K++ H +++ L
Sbjct: 191 WNPN----LNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFTGHT--AVVEDVAWHL 243
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTLIA 1098
+ L V+ D KL+ + DT +T K ++ H V L + Y ++A
Sbjct: 244 LHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFILA 296
Query: 1099 TGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1152
TGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 297 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1042 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1098
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
+ DR + VW L +S ED + F+ H
Sbjct: 341 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1316 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1372
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 281 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 340
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
+ DR + VW L +S ED + F+ H
Sbjct: 341 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 379
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 128/299 (42%), Gaps = 51/299 (17%)
Query: 390 SVYGECENIGVMSGHTGAVMDLKF-STDGCHIFTCSTDQTLAVWDLEKG----------Q 438
SV G+ E I + H G V ++ + C I T + + V+D K Q
Sbjct: 118 SVCGKIE-IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQ 176
Query: 439 RIKKMKGHST--FVNSCDPVRRGQLLIASGSDDCTVKVWD---PRKKNQAVSMNNTYQVT 493
+++GH + S +P G LL S SDD T+ +WD K+++ + N +
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLL--SASDDHTICLWDINATPKEHRVIDAKNIFTGH 234
Query: 494 SVAFNDTAECVLT----GGIDNDIKM--WDLRTNSVVQK---LRGHSDTVTGLSLSPDGS 544
+ D A +L G + +D K+ WD R N+ + + H+ V LS +P
Sbjct: 235 TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 545 YILS-NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-D 602
+IL+ + D TV +WD+R +K+ S H E + + WS + A S D
Sbjct: 295 FILATGSADKTVALWDLR-----NLKLKLHSFESHKDE--IFQVQWSPHNETILASSGTD 347
Query: 603 KCVYIWDTTT--------------RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTI 647
+ +++WD + + + GH ++D ++P EP I+ + S+ I
Sbjct: 348 RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNI 406
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 354 PIMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTG 406
P + L GH E + ++P+ Y+ S+ D I +W + + + +GHT
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKK---MKGHSTFVNSCDPVRRGQLL 462
V D+ + +F + + DQ L +WD K + H+ VN + +
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTY--QVTSVAFNDTAECVL-TGGIDNDIKMWDLR 519
+A+GS D TV +WD R + ++ ++ V ++ E +L + G D + +WDL
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS 356
Query: 520 TNSVVQKLR--------------GHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDI 560
Q GH+ ++ S +P+ +I+ S + DN +++W +
Sbjct: 357 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R +N P ++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ +++S I S TD+ L VWDL K
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 20/214 (9%)
Query: 33 NQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAV 92
N++G F G+ I ++++ + GE + A +P + +P+ D L
Sbjct: 108 NEKGEFGGFGSVCGKIEIEIKINHE-----GEVNRARYMPQNACVIATKTPSSDV--LVF 160
Query: 93 AYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECG 151
YT K GH+ + ++P L L + S D I LWD+ A
Sbjct: 161 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 220
Query: 152 LHR-------LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK---TMAA 201
HR +GH V+ D+ + F S A D + IWD + K T+ A
Sbjct: 221 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 202 HLTEVWGVCVMREDSYLIS-GSNDAELKVWNVRD 234
H EV + ++++ GS D + +W++R+
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 1095 TLIATGSGDRTVKVWGLDYGDCHK---SLLAHEDSVTGVTFVPKTHYFFTT-SKDGRVKQ 1150
+L + + D+ + +W + K ++ AH V ++F P + + T S D V
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVAL 308
Query: 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYGDCHKS 1209
WD N + + LH F S HK + + S ++ T++A+ DR + VW L +S
Sbjct: 309 WDLRNLK--LKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 363
Query: 1210 LLAHEDSVTGVTFVPKTH 1227
ED + F+ H
Sbjct: 364 TEDAEDGPPELLFIHGGH 381
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 1076 ISLYGHKLPVLSLDMSYDSTL---IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132
+ L GH+ L S++ L + + S D T+ +W ++ ++ ++ TG T
Sbjct: 179 LRLRGHQKEGYGL--SWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 1133 VPK--------THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
V + F + + D ++ WD N H + + ++ LS + Y
Sbjct: 237 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLSFN-PYSE 294
Query: 1185 TLIATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
++ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 295 FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 1252 LHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
L +NPN L +++ D ++ LW + + K++ H +++
Sbjct: 191 LSWNPN----LNGYLLSASDDHTICLWDINATPKEHRV-IDAKNIFTGHT--AVVEDVAW 243
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTL 1370
L + L V+ D KL+ + DT +T K ++ H V L + Y +
Sbjct: 244 HLLHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFI 296
Query: 1371 IATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1426
+ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 297 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 17/176 (9%)
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039
+NPN L +++ D ++ LW + + K++ H +++ L
Sbjct: 193 WNPN----LNGYLLSASDDHTICLWDINATPKEHRV-IDAKNIFTGHT--AVVEDVAWHL 245
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTLIA 1098
+ L V+ D KL+ + DT +T K ++ H V L + Y ++A
Sbjct: 246 LHESLFGSVADDQKLM---IWDTRNN----NTSKPSHTVDAHTAEVNCLSFNPYSEFILA 298
Query: 1099 TGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1152
TGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 299 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1042 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1098
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
+ DR + VW L +S ED + F+ H
Sbjct: 343 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 381
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 1316 QVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMS-YDSTLIA 1372
+V C +P S+ +LA D TV ++ L K + S HK + + S ++ T++A
Sbjct: 283 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 342
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
+ DR + VW L +S ED + F+ H
Sbjct: 343 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 381
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex
Length = 253
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 72/182 (39%), Gaps = 42/182 (23%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FDARE+WP C I ++ DQG+C SCW
Sbjct: 1 LPESFDAREQWPNCP-TIKEIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A +SDRICI S G+V +S + ++ C GG+ + AW
Sbjct: 31 ---AFGAVEAISDRICIHSNGRVNVEVSAEDML-------TCCGGECGDGCNGGEPSGAW 80
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINP 2353
+W GLV GG Y +H I H V GS P + +CE +P
Sbjct: 81 NFWTKKGLVSGGLYNSHVGCRPYSIPPCEH--HVNGSRPPCTGEGDTPKCSKTCEPGYSP 138
Query: 2354 RY 2355
Y
Sbjct: 139 SY 140
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG PYWL NS+N WG+ G FKI RG + C IE ++AG
Sbjct: 199 HAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEIVAG 249
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 111/267 (41%), Gaps = 38/267 (14%)
Query: 374 GQYIASSGYDRQIFIWSVYGECEN-IGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQTLA 430
G+ A+ D+ I I+ V GE I ++GH G V +D G + +CS D +
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 431 VWDLEKGQ--RIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCTVKVWDPRKKN----- 481
+W E G+ +I HS VNS P G L+ + SD V K+N
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVV--EFKENGTTSP 138
Query: 482 -----QAVSMNNTYQVTSV-----AFNDTAEC--VLTGGIDNDIKMW----DLRTNSVVQ 525
A+ +N+ + N T E +TGG DN +K+W D +T +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 526 KLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIW-DIRPYVPGERCVKVMSGHQHNFE 581
L GHSD V ++ SP SY S + D T IW P ++ + + F
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLL----KEEKFP 254
Query: 582 KNLLRCAWSVSGLYVTAGSADKCVYIW 608
L R +WS+SG + D V +W
Sbjct: 255 DVLWRASWSLSGNVLALSGGDNKVTLW 281
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 552 DNTVRIWDIRPYVPGE--RCVKVMSGHQHNFEKNLLRCAWSVS--GLYVTAGSADKCVYI 607
D T++I+++ GE + + ++GH E + R W+ G + + S D V I
Sbjct: 30 DKTIKIFEVE----GETHKLIDTLTGH----EGPVWRVDWAHPKFGTILASCSYDGKVXI 81
Query: 608 WDTTTRR---IAYKLPGHNGSVNDVQFHPKE--PIIMSASSDKTIYLGE-------SPLH 655
W R IA H+ SVN VQ+ P E P ++ ASSD + + E SP+
Sbjct: 82 WKEENGRWSQIAVHAV-HSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 656 CDKAGSILRSGKGRVHTMVND------KHRQILCCHGNDNVVDLFYF 696
D + S T+ D K + G DN+V ++ +
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 27/151 (17%)
Query: 1156 FERIVTLHFFI-SLYGHKLPVLSLDMSYD--STLIATGSGDRTVKVWGLDYGDCHKSLL- 1211
FE H I +L GH+ PV +D ++ T++A+ S D V +W + G + +
Sbjct: 36 FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVH 95
Query: 1212 -AHEDSVTGVTFVPKTH--YFFTTSKDGRVK----QWDADNFERIVTLH---FNPNVYLP 1261
H SV V + P + S DG+V + + I+ H N + P
Sbjct: 96 AVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 1262 LQIQ-------------VVTGGGDKSVKLWQ 1279
I+ VTGG D VK+W+
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen Cathepsin
B-Ca078 Complex
Length = 256
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 69/182 (37%), Gaps = 42/182 (23%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FDARE+WP C I ++ DQG+C SCW
Sbjct: 1 LPESFDAREQWPNCP-TIKEIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A A +SDRICI S G+V +S + ++ C + AW
Sbjct: 31 ---AFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFP-------SGAW 80
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGSSNPEVNNFEKVIRLYSCEGSINP 2353
+W GLV GG Y +H I H V GS P + +CE +P
Sbjct: 81 NFWTKKGLVSGGLYNSHVGCRPYSIPPCEH--HVNGSRPPCTGEGDTPKCSKTCEPGYSP 138
Query: 2354 RY 2355
Y
Sbjct: 139 SY 140
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG + PYWL NS+N WG+ G FKI RG + C IE ++AG
Sbjct: 199 HAIRILGWGVEN-GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAG 249
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 99/260 (38%), Gaps = 54/260 (20%)
Query: 401 MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460
++GH + +K++ +G +F+CS D + +VW G+R+ + GH+ + S D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV----- 82
Query: 461 LLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520
DC K CV TG D IK+WD+
Sbjct: 83 --------DCFTKY----------------------------CV-TGSADYSIKLWDVSN 105
Query: 521 NSVVQKLRGHSDTVTGLSLSPDGSY---ILSNAMDN--TVRIWDIRPYVPGERCVKVMSG 575
V + V + SP G+Y IL N M N ++ I++I KV
Sbjct: 106 GQCVATWKSPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164
Query: 576 HQHNFEKN-----LLRCAWSVSGLYVTAGSADKCVYIWDTTTR-RIAYKLPGHNGSVNDV 629
H + WS G Y+ AG D + +D + + H S++D+
Sbjct: 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224
Query: 630 QFHPKEPIIMSASSDKTIYL 649
QF P +++S D +L
Sbjct: 225 QFSPDLTYFITSSRDTNSFL 244
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 91/231 (39%), Gaps = 39/231 (16%)
Query: 358 LEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW-SVYGECENIGVMSGHTGAVMDLKFSTD 416
L GH + KY+ +G + S D +W S+ GE +G + GHTG + +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGHTGTIWSIDVDCF 85
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR------GQLLIA------ 464
+ T S D ++ +WD+ GQ + K S PV+R G +A
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVM 138
Query: 465 --------------SGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID 510
S + + T +P K ++ T ++ + ++ G D
Sbjct: 139 KNPGSINIYEIERDSATHELTKVSEEPIHK--IITHEGLDAATVAGWSTKGKYIIAGHKD 196
Query: 511 NDIKMWDLRTN-SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
I +D+ N V + H +++ + SPD +Y ++++ D + D+
Sbjct: 197 GKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV 247
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 113 FTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVI--TDIRFMSQ 170
TGH+ +T ++Y+ G L + SKD+ +W + L L GH G I D+ ++
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 171 PGHHFVVSSAKDTFVKIWDADTGDCFKT 198
+ V+ + D +K+WD G C T
Sbjct: 88 ----YCVTGSADYSIKLWDVSNGQCVAT 111
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 23/263 (8%)
Query: 1033 HTRTLKL---EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1089
H + +KL E + + + + LL D++ +++ + +L GH + S+D
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81
Query: 1090 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1149
+ + TGS D ++K+W + G C + + V V F P +YF D +K
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAI-LDNVMK 139
Query: 1150 QWDADN---FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS--------GDRTVKV 1198
+ N ER H + + + D+ +A S G + K+
Sbjct: 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKI 199
Query: 1199 WGLDYGDCHK---SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH-- 1253
D + ++ S+ HE S++ + F P YF T+S+D D + +
Sbjct: 200 SKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD 259
Query: 1254 --FNPNVYLPLQIQVVTGGGDKS 1274
N V PL+ ++ GGG ++
Sbjct: 260 CPLNTAVITPLKEFIILGGGQEA 282
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213
+L+GH+ +T +++ + + S +KD+ +W + G+ T+ H +W + V
Sbjct: 27 KLTGHERPLTQVKYNKEG--DLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 214 EDSYLISGSNDAELKVWNVRD 234
Y ++GS D +K+W+V +
Sbjct: 85 FTKYCVTGSADYSIKLWDVSN 105
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 112/293 (38%), Gaps = 63/293 (21%)
Query: 1166 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK 1225
I L GH+ P+ + + + L+ + S D + VW G+ +L H ++ +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 1226 THYFFTTSKDGRVKQWDADNFERIVT---------LHFNP--NVYLPLQIQVVTGGGDKS 1274
T Y T S D +K WD N + + T + F+P N +L + V+ G S
Sbjct: 86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG--S 143
Query: 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1334
+ ++++E S E K+ E+ P K++ L
Sbjct: 144 INIYEIERDSATHE---------------------LTKVSEE-------PIHKIITHEGL 175
Query: 1335 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1394
D + K+ I+ GHK +S YD + +Y D S+
Sbjct: 176 DAATVAGWSTKGKYIIA--GHKDGKIS---KYDVSN-------------NYEYVD---SI 214
Query: 1395 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPM 1447
HE S++ + F P YF T+S+D D + ++ + C LN+ +
Sbjct: 215 DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYETDCPLNTAV 266
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 11/157 (7%)
Query: 1340 IFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1399
++F + I L GH+ P+ + + + L+ + S D + VW G+ +L H
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG 75
Query: 1400 SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLNSCPALE 1459
++ + T Y T S D +K WD N + C + SP+ + P
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ-------CVATWKSPVPVKRVEFSPCGN 128
Query: 1460 ASNDIAELLMECLATMKEYEVE----CKEMTAMGKPP 1492
I + +M+ ++ YE+E E+T + + P
Sbjct: 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 88/210 (41%), Gaps = 30/210 (14%)
Query: 1066 IFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED 1125
++F + I L GH+ P+ + + + L+ + S D + VW G+ +L H
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG 75
Query: 1126 SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS---- 1181
++ + T Y T S D +K WD N + + T + +PV ++ S
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT-------WKSPVPVKRVEFSPCGN 128
Query: 1182 -----YDSTLIATGS--------GDRTVKVWGLDYGDCHKSLLAHE--DSVTGVTFVPKT 1226
D+ + GS T ++ + HK ++ HE D+ T + K
Sbjct: 129 YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHK-IITHEGLDAATVAGWSTKG 187
Query: 1227 HYFFTTSKDGRVKQWD-ADNFERI--VTLH 1253
Y KDG++ ++D ++N+E + + LH
Sbjct: 188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLH 217
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 34/88 (38%)
Query: 59 LLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKS 118
L G +A+ L G + + Q+ N + L + S + + + T GH
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTG 75
Query: 119 AITVIQYDPLGHRLATGSKDTDIVLWDV 146
I I D TGS D I LWDV
Sbjct: 76 TIWSIDVDCFTKYCVTGSADYSIKLWDV 103
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Query: 1307 HTRTLKL---EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363
H + +KL E + + + + LL D++ +++ + +L GH + S+D
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSID 81
Query: 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1414
+ + TGS D ++K+W + G C + + V V F P +YF
Sbjct: 82 VDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFL 131
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 21/114 (18%)
Query: 526 KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLL 585
KL GH +T + + +G + S + D++ +W + GER + + GH
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW---YSLNGER-LGTLDGHTGTI----- 77
Query: 586 RCAWSVS----GLYVTAGSADKCVYIWDTTTRR--IAYKLPGHNGSVNDVQFHP 633
WS+ Y GSAD + +WD + + +K P V V+F P
Sbjct: 78 ---WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSP---VPVKRVEFSP 125
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human
Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human
Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At 2.1
Angstroms Resolution: A Basis For The Design Of Specific
Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At 2.1
Angstroms Resolution: A Basis For The Design Of Specific
Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG PYWL NS+N WG+ G FKI RG + C IE V+AG
Sbjct: 150 HAIRILGWG-VENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAG 200
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 2284 CMGGDSAAAWMYWINAGLVDGGDYGTH 2310
C GG A AW +W GLV GG Y +H
Sbjct: 22 CNGGYPAEAWNFWTRKGLVSGGLYESH 48
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 137/333 (41%), Gaps = 37/333 (11%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL------AHEDSVTGV 1130
SL +K + S D S ++ATGS DR +K+ + Y D +L+ AH+ ++ V
Sbjct: 9 SLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDF--TLIDVLDETAHKKAIRSV 64
Query: 1131 TFVPKTHYFFTTSKDGRVKQW-DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189
+ P T S D V W ++ +R + + GH+ V + S D +AT
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT 124
Query: 1190 GSGDRTVKVWGLDYG----DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD--A 1243
S D++V +W D +C L H V V + P ++S D V+ W
Sbjct: 125 CSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Query: 1244 DNFERIVTLHFNPNVYLPLQ-------IQVVTGGGDKSVKLWQLELVSVNREADEETKDV 1296
D++E + L+ + ++ +G D +V++W+ + + D++ + V
Sbjct: 185 DDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY----MGDDEDDQQEWV 240
Query: 1297 SRSHKVLSLLHTR---TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY 1353
+ +L +H R + L A V D L +D K+F +
Sbjct: 241 CEA--ILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGV--- 295
Query: 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1386
+++ V+ T++ATG D V W L+
Sbjct: 296 -YEINVVKWLELNGKTILATGGDDGIVNFWSLE 327
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSV---YGECENIGVMSGHTGAVMDL 411
+ ++EGH E+ + DG Y+A+ D+ ++IW E E I V+ H+ V +
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV 159
Query: 412 KFSTDGCHIFTCSTDQTLAVW-DLEKGQR-IKKMKGHSTFVNSCDPVR-RGQLLIASGSD 468
+ + + S D T+ +W D + + + GH V S D + G + SGSD
Sbjct: 160 IWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD 219
Query: 469 DCTVKVW 475
D TV+VW
Sbjct: 220 DSTVRVW 226
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNS-------VVQKLRGHSDTVTGLSLSPDGS 544
+ SVA+ + G D+ + +W ++ ++ + GH + V G++ S DG
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 545 YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKC 604
Y+ + + D +V IW+ C+ V+ H + + W S + + S D
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK----HVIWHPSEALLASSSYDDT 176
Query: 605 VYIW---DTTTRRIAYKLPGHNGSVNDVQFHPKEPI--IMSASSDKTI----YLGE 651
V IW D +A L GH G+V F E + + S S D T+ Y+G+
Sbjct: 177 VRIWKDYDDDWECVAV-LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 352 FAPIMLLE--GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG------ECENIGVMSG 403
F I +L+ H I + P +A+ +D + IW+ E + + ++ G
Sbjct: 46 FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG 105
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL-EKGQR---IKKMKGHSTFVNSCDPVRRG 459
H V + +S DG ++ TCS D+++ +W+ E G+ I ++ HS V
Sbjct: 106 HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHV-IWHPS 164
Query: 460 QLLIASGSDDCTVKVW-DPRKKNQAVSMNNTYQVTSVAFN-DTAECVL---TGGIDNDIK 514
+ L+AS S D TV++W D + V++ N ++ T + + D E V +G D+ ++
Sbjct: 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224
Query: 515 MW 516
+W
Sbjct: 225 VW 226
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 25/174 (14%)
Query: 66 HEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQY 125
H +LL G + DS+ A + +TF +D +++ GH++ + + +
Sbjct: 69 HTSLLAAG----------SFDSTVSIWAKEESADRTFEMD---LLAIIEGHENEVKGVAW 115
Query: 126 DPLGHRLATGSKDTDIVLWDV-----VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSA 180
G+ LAT S+D + +W+ EC + L H + + + P + SS+
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYEC-ISVLQEHSQDVKHV--IWHPSEALLASSS 172
Query: 181 KDTFVKIWD--ADTGDCFKTMAAHLTEVWGVCVMREDSY--LISGSNDAELKVW 230
D V+IW D +C + H VW + + L SGS+D+ ++VW
Sbjct: 173 YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 90 LAVAYTNGSLKTFSLDTTDV----ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW- 144
LA T+ +K S+ D + T HK AI + + P LA GS D+ + +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86
Query: 145 -----DVVAECGLHR-LSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG----D 194
D E L + GH+ + + + S G +++ + ++D V IW+ D +
Sbjct: 87 KEESADRTFEMDLLAIIEGHENEVKGVAW-SNDG-YYLATCSRDKSVWIWETDESGEEYE 144
Query: 195 CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
C + H +V V ++ L S S D +++W D
Sbjct: 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD 184
Score = 37.7 bits (86), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG-------DCHKSLLAHEDSVTGVTF 1406
HK + S+ ++L+A GS D TV +W + D + HE+ V GV +
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 1407 VPKTHYFFTTSKDGRVKQWDADN 1429
+Y T S+D V W+ D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDE 138
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Query: 420 IFTCSTDQTLAVWDLEKGQRIKK----MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
I S V L K R+ K + GH+ V +IASGS+DCTV VW
Sbjct: 50 IXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVW 109
Query: 476 D--------PRKKNQAVSMNNTYQVTSVAFNDTAECV-LTGGIDNDIKMWDLRTNSVVQK 526
+ P ++ +T +V VA++ TA+ V L+ G DN I +WD+ T + V
Sbjct: 110 EIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLT 169
Query: 527 LRG--HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
L H DT+ + S DG+ I ++ D VR+ + R
Sbjct: 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMS 402
D G L P++ LEGH + +HP Q + S+G D I +W V G + +
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV-GTGAAVLTLG 171
Query: 403 G--HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG----QRIKKMKG----HSTFVNS 452
H + + +S DG I T D+ + V + KG ++ + +G H+ FV+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS- 230
Query: 453 CDPVRRGQLLIASGS--DDCTVKVWDPRKKNQAVSMNNTYQVTSVAF----NDTAECVLT 506
G++L S + V +WD + + +S+ + V DT L
Sbjct: 231 -----EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285
Query: 507 GGIDNDIKMWDLRTNS 522
G D+ I+ +++ + +
Sbjct: 286 GKGDSSIRYFEITSEA 301
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 1080 GHKLPVLSLD-MSYDSTLIATGSGDRTVKVWGLDYG-------DCHKSLLAHEDSVTGVT 1131
GH PVL + ++ +IA+GS D TV VW + G + +L H V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 1132 FVPKTH-YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
+ P + D + WD ++TL + H + S+D S D LI T
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV----HPDTIYSVDWSRDGALICTS 194
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHED------SVTGVTFVPKTHYF---FTTSKDGRVKQW 1241
D+ V+V G +++A +D FV + F+ + +V W
Sbjct: 195 CRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 1242 DADNFERIVTLH---FNPNVYLPL-----QIQVVTGGGDKSVKLWQL 1280
D + E ++L + V LP I + G GD S++ +++
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 110 ISTFTGHKSAITVIQYDPLGHR-LATGSKDTDIVLWDVVAECGLH--------RLSGHKG 160
+ GH + + I + P +A+GS+D +++W+ + + GL L GH
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE-IPDGGLVLPLREPVITLEGHTK 132
Query: 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA--HLTEVWGVCVMREDSYL 218
+ + + + ++S+ D + +WD TG T+ H ++ V R+ + +
Sbjct: 133 RVGIVAWHPT-AQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 219 ISGSNDAELKVWNVRDRSDIDTEDK 243
+ D ++V R + + +D+
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDR 216
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 11/111 (9%)
Query: 462 LIASGSDDCTVKVWD--------PRKKNQAVSMNNTYQVTSVAFNDTAECV-LTGGIDND 512
+IASGS+DCTV VW+ P ++ +T +V VA++ TA+ V L+ G DN
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155
Query: 513 IKMWDLRTNSVVQKLRG--HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
I +WD+ T + V L H DT+ + S DG+ I ++ D VR+ + R
Sbjct: 156 ILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMS 402
D G L P++ LEGH + +HP Q + S+G D I +W V G + +
Sbjct: 113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV-GTGAAVLTLG 171
Query: 403 G--HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG----QRIKKMKG----HSTFVNS 452
H + + +S DG I T D+ + V + KG ++ + +G H+ FV+
Sbjct: 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS- 230
Query: 453 CDPVRRGQLLIASGS--DDCTVKVWDPRKKNQAVSMNNTYQVTSVAF----NDTAECVLT 506
G++L S + V +WD + + +S+ + V DT L
Sbjct: 231 -----EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC 285
Query: 507 GGIDNDIKMWDLRTNS 522
G D+ I+ +++ + +
Sbjct: 286 GKGDSSIRYFEITSEA 301
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 34/227 (14%)
Query: 1080 GHKLPVLSLDM-SYDSTLIATGSGDRTVKVWGLDYG-------DCHKSLLAHEDSVTGVT 1131
GH PVL + ++ +IA+GS D TV VW + G + +L H V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 1132 FVPKTH-YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG 1190
+ P + D + WD ++TL + H + S+D S D LI T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV----HPDTIYSVDWSRDGALICTS 194
Query: 1191 SGDRTVKVWGLDYGDCHKSLLAHED------SVTGVTFVPKTHYF---FTTSKDGRVKQW 1241
D+ V+V G +++A +D FV + F+ + +V W
Sbjct: 195 CRDKRVRVIEPRKG----TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Query: 1242 DADNFERIVTLH---FNPNVYLPL-----QIQVVTGGGDKSVKLWQL 1280
D + E ++L + V LP I + G GD S++ +++
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 13/145 (8%)
Query: 110 ISTFTGHKSAITVIQYDPLGHR-LATGSKDTDIVLWDVVAECGLH--------RLSGHKG 160
+ GH + + I + P +A+GS+D +++W+ + + GL L GH
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE-IPDGGLVLPLREPVITLEGHTK 132
Query: 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMA--AHLTEVWGVCVMREDSYL 218
+ + + + ++S+ D + +WD TG T+ H ++ V R+ + +
Sbjct: 133 RVGIVAWHPT-AQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 219 ISGSNDAELKVWNVRDRSDIDTEDK 243
+ D ++V R + + +D+
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDR 216
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin
B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The
Whole Active Site Cleft
Length = 205
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+++I+GWG PYWL NS+N WG+ G FKI RG + C IE ++AG
Sbjct: 151 HAIRILGWG-VENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAG 201
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 139/331 (41%), Gaps = 68/331 (20%)
Query: 390 SVYGECENIGVMSGHTGAVMDLKF-STDGCHIFTCSTDQTLAVWDLEKGQRIK------- 441
SV G+ E I + H G V ++ + C I T + + V+D K
Sbjct: 110 SVSGKIE-IEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECN 168
Query: 442 ---KMKGHST--FVNSCDPVRRGQLLIASGSDDCTVKVWD----PRKKN----QAVSMNN 488
+++GH + S +P G LL S SDD T+ +WD P++ + + +
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLL--SASDDHTICLWDISAVPKEGKVVDAKTIFTGH 226
Query: 489 TYQVTSVAFNDTAECVLTGGIDNDIKM--WDLRTNSVVQ---KLRGHSDTVTGLSLSPDG 543
T V V+++ E L G + +D K+ WD R+N+ + + H+ V LS +P
Sbjct: 227 TAVVEDVSWHLLHES-LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYS 285
Query: 544 SYILS-NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA- 601
+IL+ + D TV +WD+R +K+ S H E + + WS + A S
Sbjct: 286 EFILATGSADKTVALWDLR-----NLKLKLHSFESHKDE--IFQVQWSPHNETILASSGT 338
Query: 602 DKCVYIWDTT--------------TRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSD-- 644
D+ + +WD + + + GH ++D ++P EP +I S S D
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Query: 645 -------KTIYLGESPLHCDKAGSILRSGKG 668
+ IY E P GS+ G+G
Sbjct: 399 MQVWQMAENIYNDEDP-----EGSVDPEGQG 424
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 102/236 (43%), Gaps = 29/236 (12%)
Query: 354 PIMLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGECENIGVM------SGHTG 406
P + L GH E + ++P+ ++ S+ D I +W + + V+ +GHT
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIK---KMKGHSTFVNSCDPVRRGQLL 462
V D+ + +F + + DQ L +WD K + H+ VN + +
Sbjct: 229 VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTY--QVTSVAFNDTAECVL-TGGIDNDIKMWDLR 519
+A+GS D TV +WD R + ++ ++ V ++ E +L + G D + +WDL
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Query: 520 TNSVVQKLR--------------GHSDTVTGLSLSPDGSYIL-SNAMDNTVRIWDI 560
Q GH+ ++ S +P+ +++ S + DN +++W +
Sbjct: 349 KIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 347 RTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405
R++N P ++ H E+ C ++P ++I ++G D+ + +W + + H
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 406 GAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK 436
+ +++S I S TD+ L VWDL K
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSK 349
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 17/178 (9%)
Query: 1252 LHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311
L +NPN L +++ D ++ LW + V + + K + H +++ +
Sbjct: 183 LSWNPN----LSGHLLSASDDHTICLWDISAVPKEGKV-VDAKTIFTGHT--AVVEDVSW 235
Query: 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTL 1370
L + L V+ D KL+ + DT +T K S+ H V L + Y +
Sbjct: 236 HLLHESLFGSVADDQKLM---IWDTRSN----NTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 1371 IATGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1426
+ATGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 289 LATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 101 TFSLDTTDVISTFTGHKSAITVIQYDPLGHR-LATGSKDTDIVLWDVVA-ECGLHRLSGH 158
T S +T+ + H + + + ++P LATGS D + LWD+ + LH H
Sbjct: 257 TRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH 316
Query: 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
K I +++ S + SS D + +WD
Sbjct: 317 KDEIFQVQW-SPHNETILASSGTDRRLNVWD 346
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039
+NPN L +++ D ++ LW + V + + K + H +++ + L
Sbjct: 185 WNPN----LSGHLLSASDDHTICLWDISAVPKEGKV-VDAKTIFTGHT--AVVEDVSWHL 237
Query: 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS-YDSTLIA 1098
+ L V+ D KL+ + DT +T K S+ H V L + Y ++A
Sbjct: 238 LHESLFGSVADDQKLM---IWDTRSN----NTSKPSHSVDAHTAEVNCLSFNPYSEFILA 290
Query: 1099 TGSGDRTVKVWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1152
TGS D+TV +W L S +H+D + V + P +S D R+ WD
Sbjct: 291 TGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 1139 FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS-YDSTLIATGSGDRTVK 1197
F + + D ++ WD + H S+ H V L + Y ++ATGS D+TV
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSH---SVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 1198 VWGLDYGDCH-KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWD 1242
+W L S +H+D + V + P +S D R+ WD
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+V+++GWG +S PYW NS+N WG G F IRRG + C IED AG
Sbjct: 260 HAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAG 310
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 44/130 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FD+ E WP C I ++ DQ AC SCW
Sbjct: 72 LPSSFDSAEAWPNCP-TIPQIADQSACGSCW----------------------------- 101
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPI-LSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292
A++AAS MSDR C + G V+ + +S L+ C++C C GGD A
Sbjct: 102 ---AVAAASAMSDRFC--TMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRA 148
Query: 2293 WMYWINAGLV 2302
W Y+ + GLV
Sbjct: 149 WAYFSSTGLV 158
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 148/362 (40%), Gaps = 40/362 (11%)
Query: 300 LNIDDFAFGIDTTQ-----ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAP 354
LN AF +D + +LRT+ + + VT R N ++V L AP
Sbjct: 38 LNTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVVTPAKRRFNTTPERV---------LDAP 88
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFS 414
++ + + + S + + + +R +++W+ + + + V +K+S
Sbjct: 89 GIIDDYYLNLLDWSNLN-----VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWS 143
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DG + + + ++D+E +++ M GH V R +++SGS +
Sbjct: 144 HDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHH 200
Query: 475 WDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSD 532
D R N + ++ +V +A+ + +GG DN +++WD R++ H+
Sbjct: 201 HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA 260
Query: 533 TVTGLSLSPDGSYILSNA---MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589
V ++ P S +L+ MD + W+ G R V +G Q + W
Sbjct: 261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNA---ATGARVNTVDAGSQ------VTSLIW 311
Query: 590 SVSG--LYVTAGSADKCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEPIIMSASSDK 645
S + T G D + IW ++ + + +P H+ V P I+ +A+SD+
Sbjct: 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371
Query: 646 TI 647
+
Sbjct: 372 NL 373
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 93/213 (43%), Gaps = 10/213 (4%)
Query: 355 IMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHTGAVMDLKF 413
+ + GH + C ++ +++ SSG I V IG + GH+ V L +
Sbjct: 169 LRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 414 STDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCD--PVRRGQLLIASGSDDCT 471
+DG + + D + +WD H+ V + P + L G+ D
Sbjct: 226 RSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLT--GGIDNDIKMWDLRTNSVVQK--L 527
+ W+ + +++ QVTS+ ++ ++ +++ G DN++ +W ++ + ++ +
Sbjct: 286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
H V +LSPDG + + A D ++ W +
Sbjct: 346 PAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/266 (19%), Positives = 106/266 (39%), Gaps = 35/266 (13%)
Query: 1085 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK 1144
V S+ S+D + ++ G G+ V ++ ++ +++ H+ V +++ H + S+
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR 194
Query: 1145 DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204
G + D RI H +L GH V L D +A+G D V++W
Sbjct: 195 SGAIHHHDV----RIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSS 249
Query: 1205 DCHKSLLAHEDSVTGVTFVPKTHYFFTT---SKDGRVKQWDADNFERIVTLHFNPNV--- 1258
+ H +V V + P T + D ++ W+A R+ T+ V
Sbjct: 250 IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSL 309
Query: 1259 -YLPLQIQVVTGGG--DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315
+ P ++++ G D ++ +W + ++ D D
Sbjct: 310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT------------------- 350
Query: 1316 QVLCARVSPDSKLLAVSLLDTTVKIF 1341
+VL + +SPD ++L+ + D +K +
Sbjct: 351 RVLYSALSPDGRILSTAASDENLKFW 376
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 97/231 (41%), Gaps = 29/231 (12%)
Query: 16 FNIIASPNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEK 75
N++ N NVV V L+ +V +W+ A+ + AL E
Sbjct: 96 LNLLDWSNLNVVAVALE------------RNVYVWN---ADSGSV------SALAETDES 134
Query: 76 HEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATG 135
V + +HD S L+V NG + + +++ + T GH++ + + ++ H L++G
Sbjct: 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSG 192
Query: 136 SKDTDIVLWDV-VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD 194
S+ I DV +A + L GH + + + S + S D V+IWDA +
Sbjct: 193 SRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQ--LASGGNDNVVQIWDARSSI 250
Query: 195 CFKTMAAHLTEVWGVCVMREDSYLIS---GSNDAELKVWNVRDRSDIDTED 242
T H V V S L++ G+ D ++ WN + ++T D
Sbjct: 251 PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD 301
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 37/193 (19%)
Query: 882 QGHHSEVRALAFSSDNLALVSACASQ-VKIWN-RPSLSCLRTIDTGSYALSVCFVPGDRH 939
QGH SEV LA+ SD L L S V+IW+ R S+ + + +V + P +
Sbjct: 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 940 VLV---GTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
+L GT D ++ + G + + A SQ V L ++ P ++++
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQ----VTSL-------IWSPHSKEIMSTH 322
Query: 997 G--DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054
G D ++ +W + ++ D D +VL + +SPD ++
Sbjct: 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDT-------------------RVLYSALSPDGRI 363
Query: 1055 LAVSLLDTTVKIF 1067
L+ + D +K +
Sbjct: 364 LSTAASDENLKFW 376
Score = 37.7 bits (86), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 10/177 (5%)
Query: 65 KHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQ 124
H+ L G EVC L+ D QLA + ++ + ++ T T H +A+ +
Sbjct: 207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266
Query: 125 YDPL-GHRLAT--GSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSA- 180
+ P + LAT G+ D I W+ ++ + V + + P ++S+
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTS---LIWSPHSKEIMSTHG 323
Query: 181 -KDTFVKIWDADTGDCFKT--MAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD 234
D + IW + K + AH T V + + L + ++D LK W V D
Sbjct: 324 FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 13/195 (6%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT 1136
+L GH V L D +A+G D V++W + H +V V + P
Sbjct: 212 TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271
Query: 1137 HYFFTT---SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193
T + D ++ W+A R+ T+ G ++ L + G D
Sbjct: 272 SNLLATGGGTMDKQIHFWNAATGARVNTVD-----AGSQVTSLIWSPHSKEIMSTHGFPD 326
Query: 1194 RTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW---DADNFER 1248
+ +W K + AH+ V P T + D +K W D D+ +R
Sbjct: 327 NNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 386
Query: 1249 IVTLHFNPNVYLPLQ 1263
+ + P+ + ++
Sbjct: 387 PIPITKTPSSSITIR 401
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN-A 550
V SV ++ + G + + ++D+ + + ++ + GH V LS + ++LS+ +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 551 MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610
+ D+R + + GH + AW GL + +G D V IWD
Sbjct: 194 RSGAIHHHDVRI---ANHQIGTLQGH----SSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
Query: 611 TTRRIAYKLPGHNGSVNDVQFHPKEPIIMS---ASSDKTIYLGESP----LHCDKAGSIL 663
+ + HN +V V + P + +++ + DK I+ + ++ AGS
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS-- 304
Query: 664 RSGKGRVHTMVNDKH-RQILCCHG-NDNVVDLFYFCT 698
+V +++ H ++I+ HG DN + ++ + +
Sbjct: 305 -----QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+V+++GWG +S PYW NS+N WG G F IRRG + C IED AG
Sbjct: 259 HAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAG 309
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 44/130 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FD+ E WP C I ++ DQ AC SCW
Sbjct: 71 LPSSFDSAEAWPNCP-TIPQIADQSACGSCW----------------------------- 100
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPI-LSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292
A++AAS MSDR C + G V+ + +S L+ C++C C GGD A
Sbjct: 101 ---AVAAASAMSDRFC--TMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRA 147
Query: 2293 WMYWINAGLV 2302
W Y+ + GLV
Sbjct: 148 WAYFSSTGLV 157
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+V+++GWG +S PYW NS+N WG G F IRRG + C IED AG
Sbjct: 282 HAVRLVGWG-TSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAG 332
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 44/130 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FD+ E WP C I ++ DQ AC SCW
Sbjct: 94 LPSSFDSAEAWPNCP-TIPQIADQSACGSCW----------------------------- 123
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPI-LSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292
A++AAS MSDR C + G V+ + +S L+ C++C C GGD A
Sbjct: 124 ---AVAAASAMSDRFC--TMGGVQDVHISAGDLLACCSDCG--------DGCNGGDPDRA 170
Query: 2293 WMYWINAGLV 2302
W Y+ + GLV
Sbjct: 171 WAYFSSTGLV 180
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 17/214 (7%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE----NIGVMSGHTGAVMDLKFSTD 416
H + +K P G Y AS + IW I V SG V D+ + ++
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---PVKDISWDSE 114
Query: 417 GCHIFTCST--DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
I ++ V+ + G + G + +NS D I SGSDD TV +
Sbjct: 115 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174
Query: 475 WD-PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMW---DLRTNSVVQ----K 526
++ P K ++ +T V SV +N + G D I ++ D V + K
Sbjct: 175 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLK 234
Query: 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
HS +V GL+ SPDG+ I S + D T++IW++
Sbjct: 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/391 (20%), Positives = 146/391 (37%), Gaps = 54/391 (13%)
Query: 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVW-GLD------Y 1113
D TV IF FKF + H V S+ + D +L A+ GD T+ ++ G+D +
Sbjct: 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 228
Query: 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL 1173
D +AH SV G+T+ P + S D +K W+ + T+ G ++
Sbjct: 229 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV-----GTRI 283
Query: 1174 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233
L + + + + S + + + G + H ++T ++ F+
Sbjct: 284 EDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD 343
Query: 1234 KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQV-VTGGGDKSVKLW--QLELVSVNREAD 1290
+G + WD ++ P+V+ + + T GD W L++V
Sbjct: 344 AEGHINSWD---ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400
Query: 1291 EETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1350
+ +K V+ KL Q L VS D + + I
Sbjct: 401 DSSKAVAN-------------KLSSQPLGLAVSADGDIAVAACYK-------------HI 434
Query: 1351 SLYGH----KLPV----LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK-SLLAHEDSV 1401
++Y H ++P+ + +S D +A G D V V+ L + + H +
Sbjct: 435 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 494
Query: 1402 TGVTFVPKTHYFFTTSKDGRVKQWD-ADNFE 1431
T V F + T + +V + A+NFE
Sbjct: 495 TSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 91/421 (21%), Positives = 159/421 (37%), Gaps = 80/421 (19%)
Query: 868 GSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACASQ-VKIWNRPSLSCLRTIDTGS 926
G+ V S+ H V L +S D + SA A + +KIWN +L +TI G+
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 927 ----YALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPAHSQEL----------- 970
L + + + LV + +G + V+ G I + H++ +
Sbjct: 282 RIEDQQLGIIWT---KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338
Query: 971 ------------WSVAM-LPDQFNPNVYLPLQIQV-VTGGGDKSVKLW--QLELVSVNRE 1014
W ++ + ++ P+V+ + + T GD W L++V
Sbjct: 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGS 398
Query: 1015 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF 1074
+ +K V+ KL Q L VS D + +
Sbjct: 399 GVDSSKAVAN-------------KLSSQPLGLAVSADGDIAVAACYK------------- 432
Query: 1075 FISLYGH----KLPVL----SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK-SLLAHED 1125
I++Y H ++P+ + +S D +A G D V V+ L + + H
Sbjct: 433 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 492
Query: 1126 SVTGVTFVPKTHYFFTTSKDGRVKQWD-ADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184
+T V F + T + +V + A+NFE L S H V + S D+
Sbjct: 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFE----LAHTNSWTFHTAKVACVSWSPDN 548
Query: 1185 TLIATGSGDRTVKVWGLDYGDCHKSLL--AHE-DSVTGVTFVPKTHYFFTTSKDGRVKQW 1241
+ATGS D +V VW ++ H ++ AH SV V ++ +T + +D +K W
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFW 607
Query: 1242 D 1242
+
Sbjct: 608 N 608
Score = 38.1 bits (87), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 367 CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426
C D Q++A G D ++ ++ + G + H + + FS +G F +TD
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA--FLVATD 510
Query: 427 QTLAVWDLEKGQRIKKMKGHS----TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-KN 481
Q+ V + +S T +C + +A+GS D +V VW+ K +
Sbjct: 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570
Query: 482 QAVSMNNTYQVTSVA----FNDTAECVLTGGIDNDIKMWDL 518
+ + + ++SV N+T +++ G D++IK W++
Sbjct: 571 HPIIIKGAHAMSSVNSVIWLNET--TIVSAGQDSNIKFWNV 609
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 20/208 (9%)
Query: 1043 VLCARVSPDSKLLAVSLLDTTVKIF-FLDTFKFFI----SL--YGHKLPVLSLDMSYDST 1095
V R +PD L A + D T+ ++ +D K + SL H V L S D T
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 1096 LIATGSGDRTVKVWGLDYGDCHKSLLAH---EDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152
IA+ S D+T+K+W + K++ ED G+ + + + S +G +
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA--LVSISANGFI---- 306
Query: 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL- 1211
NF YGH + +L S D + + + + W + G ++
Sbjct: 307 --NFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 364
Query: 1212 AHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239
H +TG+ K FT S D +K
Sbjct: 365 VHATMITGIKTTSKGD-LFTVSWDDHLK 391
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 9/122 (7%)
Query: 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFSTDGC 418
H EI + +G ++ ++ R++ +SV E + + HT V + +S D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 419 HIFTCSTDQTLAVWDLEKGQR----IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
+ T S D ++ VW++ K IK S+ VNS + + I S D +K
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSS-VNSV--IWLNETTIVSAGQDSNIKF 606
Query: 475 WD 476
W+
Sbjct: 607 WN 608
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQ 170
+++T H + + + + P RLATGS D +++W+ +++ S H +I MS
Sbjct: 530 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN------MNKPSDHPIIIKGAHAMSS 583
Query: 171 P------GHHFVVSSAKDTFVKIWD 189
+VS+ +D+ +K W+
Sbjct: 584 VNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 102 FSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRLSGHKG 160
F DT TG A+ + + P R+ +GS D + +++ H
Sbjct: 132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 191
Query: 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG--------DCFKTMAAHLTEVWGVCVM 212
+ +R+ P S+ D + +++ G D K +A H V+G+
Sbjct: 192 FVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA-HSGSVFGLTWS 248
Query: 213 REDSYLISGSNDAELKVWNV 232
+ + + S S D +K+WNV
Sbjct: 249 PDGTKIASASADKTIKIWNV 268
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 448 TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY----QVTSVAFNDTAEC 503
++ +SC + + +A G D V V+ + +VS T ++TSVAF++
Sbjct: 448 SYNSSCVALSNDKQFVAVGGQDSKVHVY--KLSGASVSEVKTIVHPAEITSVAFSNNGAF 505
Query: 504 VLTGGIDNDIKMWDLRTNSVVQKLRG---HSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
++ + + + N + H+ V +S SPD + + ++DN+V +W++
Sbjct: 506 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565
Query: 561 RPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609
P + + + H + +++ W V+AG D + W+
Sbjct: 566 NK--PSDHPIIIKGAHAMSSVNSVI---WLNETTIVSAGQ-DSNIKFWN 608
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin
C): Exclusion Domain Added To An Endopeptidase Framework
Creates The Machine For Activation Of Granular Serine
Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin
C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human Dipeptidyl
Peptidase I (cathepsin C)
Length = 69
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 2357 HSVKIIGWGK-SSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+V ++G+G S+ YW+ NS+ GWGE G F+IRRG + C+IE +A
Sbjct: 11 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 6/122 (4%)
Query: 365 IFCSKYHPD---GQYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFSTDGCHI 420
I C + P G ++ + + + W V + I HTG V+D+ +S DG +
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKV 101
Query: 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL-LIASGSDDCTVKVWDPRK 479
FT S D+T +WDL Q I ++ H V + ++ + +GS D T+K WD R
Sbjct: 102 FTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS 160
Query: 480 KN 481
N
Sbjct: 161 SN 162
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 72/169 (42%), Gaps = 17/169 (10%)
Query: 413 FSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT 471
F T G +F + +TD + D+E G +F P G LIA GS
Sbjct: 10 FGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSF---SPPTLPGNFLIA-GSWAND 65
Query: 472 VKVWDPRKKNQAV---SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR 528
V+ W+ + Q + +T V V ++D V T D KMWDL +N +Q +
Sbjct: 66 VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IA 124
Query: 529 GHSDTVTGLSL--SPDGSYILSNAMDNTVRIWDIRPYVP------GERC 569
H V + +P+ S +++ + D T++ WD R P ERC
Sbjct: 125 QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 173
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 12/121 (9%)
Query: 532 DTVTGLSLSPD---GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588
D++ LS SP G+++++ + N VR W+++ G+ K H +L
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--GQTIPKAQQMH----TGPVLDVC 93
Query: 589 WSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQF--HPKEPIIMSASSDKT 646
WS G V S DK +WD ++ + A ++ H+ V + + P +M+ S DKT
Sbjct: 94 WSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152
Query: 647 I 647
+
Sbjct: 153 L 153
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 504 VLTGGIDNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
++ G ND++ W+++ + ++ + + H+ V + S DGS + + + D T ++WD+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
Query: 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610
+ +++ QH+ + + + V GS DK + WDT
Sbjct: 117 ----SNQAIQIA---QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Score = 37.7 bits (86), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 92/354 (25%)
Query: 1124 EDSVTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM 1180
+DS+ ++F P T ++ S V+ W+ + + + + H PVL +
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK----AQQMHTGPVLDVCW 94
Query: 1181 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240
S D + + T S D+T K+W L ++++ ++ Q
Sbjct: 95 SDDGSKVFTASCDKTAKMWDL-----------------------------SSNQAIQIAQ 125
Query: 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300
DA + T+H+ + P V+TG DK++K W D S+
Sbjct: 126 HDAP----VKTIHW---IKAPNYSCVMTGSWDKTLKFW----------------DTRSSN 162
Query: 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT----FKFFISLYGHK 1356
++ L+L E+ CA V + V+ + + ++ L+ F+ S H+
Sbjct: 163 PMM------VLQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQ 214
Query: 1357 LPVLSL--DMSYDSTLIATGSGDRTVKVWGLDYGD---------CHKS----LLAHED-- 1399
+++ D T A GS + V + ++ + CH+S A +D
Sbjct: 215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIY 274
Query: 1400 SVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHICSCSLNSPMNSVHLN 1453
+V G+ F P T DGR WD D ++ T S L+ P+++ N
Sbjct: 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT----SEQLDQPISACCFN 324
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHY-- 1138
H PVL + S D + + T S D+T K+W L + + H+ V + ++ +Y
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143
Query: 1139 FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198
T S D +K WD + ++ L Y D+ Y ++AT +R + V
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCY-------CADVIYPMAVVAT--AERGLIV 194
Query: 1199 WGLD 1202
+ L+
Sbjct: 195 YQLE 198
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 483 AVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPD 542
A S T QVT +A++ ++TG + ++++W+ +T +++ L H + + + D
Sbjct: 102 ASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKD 160
Query: 543 GSYILSNAMDNTVRIWDI------RPYVPGERCVKVMSGHQHNFEKNL-LRCAWSVSGLY 595
G++I+S ++N +W++ + + E ++ H+ + +L + W +
Sbjct: 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220
Query: 596 VTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYL 649
V G ++++ T + KL GH+G ++ ++F+ +++SAS D T+ +
Sbjct: 221 VIPGPK-GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 94/214 (43%), Gaps = 21/214 (9%)
Query: 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423
++ C + DG I + + ++ +W+ G N V++ H ++ +K++ DG HI +
Sbjct: 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLN--VLNFHRAPIVSVKWNKDGTHIISM 167
Query: 424 STDQTLAVWDLEKGQ-----RIKKMKGHSTFVNSCDPVRRGQLLI-ASGSDDCTVKVWDP 477
+ +W++ G +K+ G S +N+ + G L + DD + P
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSS--INAENHSGDGSLGVDVEWVDDDKFVIPGP 225
Query: 478 R----------KKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL 527
+ K + + ++ + FNDT + +L+ D +++W +
Sbjct: 226 KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF 285
Query: 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
GHS ++ S D ++S +MD +VR+W ++
Sbjct: 286 YGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLK 318
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 31/249 (12%)
Query: 1014 EADEETKDVSRSHKVLSLLHTRTL-----KLEEQVLCARVSPDSKLLAVSLLDTTVKIF- 1067
E D+E K + + L H L K QV C S D + + + ++++
Sbjct: 77 ETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN 136
Query: 1068 ----FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1123
L+ F H+ P++S+ + D T I + + +W + G +
Sbjct: 137 KTGALLNVLNF------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELK 190
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF----ERIVTLHFFIS-------LYGHK 1172
E TG + + ++ S V+ D D F + + I+ L GH
Sbjct: 191 E---TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHH 247
Query: 1173 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232
P+ L+ + + L+ + S D T+++W G+ H S+ ++V +
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISC 306
Query: 1233 SKDGRVKQW 1241
S DG V+ W
Sbjct: 307 SMDGSVRLW 315
Score = 37.7 bits (86), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 386 IFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG 445
IF++ + E G + GH G + L+F+ + + S D TL +W G G
Sbjct: 229 IFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSMNNTYQVTSVAFNDTAECV 504
HS + S V G + S S D +V++W ++ A+S+ + + + + +
Sbjct: 288 HSQSIVSASWV--GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKY 345
Query: 505 LTGGIDNDIKMWDLRT-NSVVQKLRGHSDTV 534
+D + ++DL+ NS + L G+ D +
Sbjct: 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGI 376
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 16/223 (7%)
Query: 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVY--------------GECENI 398
A + +L H I K++ DG +I S + +W+V G N
Sbjct: 140 ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINA 199
Query: 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458
SG +D+++ D + + V+ + + K+ GH ++ +
Sbjct: 200 ENHSGDGSLGVDVEWVDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT 258
Query: 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDL 518
+LL+ S SDD T+++W N Q A + V++ +D +++W L
Sbjct: 259 NKLLL-SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSL 317
Query: 519 RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561
+ N+++ + +S DG MD V ++D++
Sbjct: 318 KQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137
L GH P+ L+ + + L+ + S D T+++W G+ H S+ ++V
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
+ S DG V+ W + ++ L I +P+ + +S D A D V
Sbjct: 303 -VISCSMDGSVRLW---SLKQNTLLALSIV---DGVPIFAGRISQDGQKYAVAFMDGQVN 355
Query: 1198 VWGL-DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235
V+ L +SL + D + +P + + +S+D
Sbjct: 356 VYDLKKLNSKSRSLYGNRDGILNPLPIP-LYASYQSSQD 393
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 1352 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1411
L GH P+ L+ + + L+ + S D T+++W G+ H S+ ++V
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 1412 YFFTTSKDGRVKQW 1425
+ S DG V+ W
Sbjct: 303 -VISCSMDGSVRLW 315
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C
Length = 441
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2357 HSVKIIGWGK-SSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMA 2407
H+V ++G+G S+ YW+ NS+ GWGE G F+IRRG + C+IE +A
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVA 432
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 134/323 (41%), Gaps = 42/323 (13%)
Query: 361 HGGEIFCSKYHP-DGQYIASSGYDRQIFIWSV-------YGECENIGVMSG-----HTGA 407
HGG I P +G+Y+ S G D I ++ + Y C+ + + H +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 408 VMDLKFSTDGCHIFTCST-DQTLAVWDLEKGQRIKKMKGHST-FVNSCDPVRRGQLLIAS 465
V +++ +FT S+ D+TL VWD Q T + + PV L+A
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 466 GSDDCTVKVWDPRKKNQA-VSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLR---- 519
G+ V++ D + + + + + ++ +V+++ + +L T D+ +K+WD+R
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 520 ------------TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE 567
+ +V H+ V GL + DG ++L+ DN +R+W+ GE
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS---NGE 278
Query: 568 RCVKVMSGHQHNFEKNL---LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG 624
+ +N +K L + C S ++V GS + ++ + L GH
Sbjct: 279 NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST---IAVYTVYSGEQITMLKGHYK 335
Query: 625 SVNDVQFHPKEPIIMSASSDKTI 647
+V+ F + S S D I
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNI 358
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 1110 GLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISL 1168
G D+ D H+ SV V + P FT+S D +K WD + + +F ++
Sbjct: 91 GRDHPDVHRY------SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV 144
Query: 1169 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHY 1228
Y H + +S L+A G+ V++ L G C L H + V++ P+ Y
Sbjct: 145 YSHHMSPVSTKH----CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY 200
Query: 1229 FF-TTSKDGRVKQWD 1242
T S D RVK WD
Sbjct: 201 ILATASADSRVKLWD 215
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 101/269 (37%), Gaps = 56/269 (20%)
Query: 992 VVTGGGDKSVKLWQLELVSVNREADEETKDV---SRSHKVLSLLHTRTLKLEEQVLCARV 1048
+++GG D + L+ LE + +R++ K V R H + T++
Sbjct: 59 MLSGGSDGVIVLYDLE--NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH------ 110
Query: 1049 SPDSKLLAVSLLDTTVKIF------FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1102
D+ + S D T+K++ D F F ++Y H + +S L+A G+
Sbjct: 111 --DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKH----CLVAVGTR 164
Query: 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVT 1161
V++ L G C L H + V++ P+ Y T S D RVK WD +
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCL- 223
Query: 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1221
I+L H +G ++ V + AH V G+
Sbjct: 224 ----ITLDQH-------------------NGKKSQAV--------ESANTAHNGKVNGLC 252
Query: 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIV 1250
F + T D R++ W++ N E +
Sbjct: 253 FTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 101/253 (39%), Gaps = 35/253 (13%)
Query: 1027 KVLSLLHTRTLK------LEEQVLCARVSPDSK---LLAVSLLDTTVKIFFLDTFKFFIS 1077
K L + T TL+ EE V +SP S L+AV V++ L +
Sbjct: 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181
Query: 1078 LYGHKLPVLSLDMS--YDSTLIATGSGDRTVKVWG----------LDYGDCHKSLL---- 1121
L GH+ +L++ S YD ++AT S D VK+W LD + KS
Sbjct: 182 LQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 1122 --AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI---SLYGHKLPVL 1176
AH V G+ F + T D R++ W++ N E + + + S G K V
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV- 299
Query: 1177 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG 1236
S S + + GS T+ V+ + G+ L H +V F ++ S+D
Sbjct: 300 SCGCSSEFVFVPYGS---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDC 356
Query: 1237 RVKQWDADNFERI 1249
+ W +E +
Sbjct: 357 NILAWVPSLYEPV 369
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDV---SRSHKVLSLLHTRTLKLEEQVLCARV 1322
+++GG D + L+ LE + +R++ K V R H + T++
Sbjct: 59 MLSGGSDGVIVLYDLE--NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH------ 110
Query: 1323 SPDSKLLAVSLLDTTVKIF------FLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG 1376
D+ + S D T+K++ D F F ++Y H + +S L+A G+
Sbjct: 111 --DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKH----CLVAVGTR 164
Query: 1377 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF-TTSKDGRVKQWD 1426
V++ L G C L H + V++ P+ Y T S D RVK WD
Sbjct: 165 GPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 35 EGRFLATGASEDVII-WDLRLAEKALLLPGEKHEALLLPGEKH--------EVCQLSPNH 85
EGR++ +G S+ VI+ +DL + + + A+ G H E Q P H
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCK---AVCSIGRDHPDVHRYSVETVQWYP-H 110
Query: 86 DSSQLAVAYTNGSLK---TFSLDTTDVI----STFTGHKSAITVIQYDPLGHRLATGSKD 138
D+ + + +LK T +L T DV + ++ H S ++ +A G++
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC-----LVAVGTRG 165
Query: 139 TDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAK-DTFVKIWDADTGD-CF 196
+ L D+ + H L GH+ I + + P + +++++A D+ VK+WD C
Sbjct: 166 PKVQLCDLKSGSCSHILQGHRQEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCL 223
Query: 197 KTM---------------AAHLTEVWGVCVMREDSYLISGSNDAELKVWN 231
T+ AH +V G+C + +L++ D +++WN
Sbjct: 224 ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 28/161 (17%)
Query: 1301 KVLSLLHTRTLK------LEEQVLCARVSPDSK---LLAVSLLDTTVKIFFLDTFKFFIS 1351
K L + T TL+ EE V +SP S L+AV V++ L +
Sbjct: 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHI 181
Query: 1352 LYGHKLPVLSLDMS--YDSTLIATGSGDRTVKVWG----------LDYGDCHKSLL---- 1395
L GH+ +L++ S YD ++AT S D VK+W LD + KS
Sbjct: 182 LQGHRQEILAVSWSPRYD-YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 1396 --AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434
AH V G+ F + T D R++ W++ N E +
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 40/214 (18%)
Query: 357 LLEGHGGEIFCSKYHPDGQYI-ASSGYDRQIFIWSVYGECENIGVM-------------- 401
+L+GH EI + P YI A++ D ++ +W V + +
Sbjct: 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 402 -SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNS---CDPVR 457
+ H G V L F++DG H+ T TD + +W+ G+ +T VN C+ +
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE--------NTLVNYGKVCNNSK 292
Query: 458 RG-QLLIASGSDD--------CTVKVWDPRKKNQAVSMNNTYQ-VTSVAFNDTAECVLTG 507
+G + ++ G T+ V+ Q + Y+ V F + + +G
Sbjct: 293 KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352
Query: 508 GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP 541
D +I W S+ + + +T T L+P
Sbjct: 353 SRDCNILAW---VPSLYEPVPDDDETTTKSQLNP 383
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin
B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The
Whole Active Site Cleft
Length = 48
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 33/81 (40%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE+FDARE+WP C I ++ DQG+C SCW
Sbjct: 1 LPESFDAREQWPNCP-TIKEIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQSKG 2254
A A +SDRICI S G
Sbjct: 31 ---AFGAVEAISDRICIHSNG 48
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine
Protease Of The Papain Family
Length = 438
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2357 HSVKIIGWGKSS-QNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAG 2408
H+V ++G+GK YW+ NS+ WGE G F+IRRG + C+IE MA
Sbjct: 380 HAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAA 432
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 38/269 (14%)
Query: 374 GQYIASSGYDRQIFIWSVY-GECENIGVMSGHTGAVMDLKFSTD--GCHIFTCSTDQTLA 430
G +A+ DR + I+ V G I + GH G V + ++ G + +CS D+ +
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 431 VWDLEKG--QRIKKMKGHSTFVNS-CDPVRRGQLLIASGSDDCTVKV--------WDPRK 479
+W E G ++ + GH + VNS C L++A GS D + + W+ +K
Sbjct: 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK 144
Query: 480 KNQA--VSMNNTYQVTSVAFN-----------DTAECVLTGGIDNDIKMWDLRTNSVV-- 524
N A + N +V + + +GG DN IK+W +
Sbjct: 145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE 204
Query: 525 -QKLRGHSDTVTGLSLSPD----GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579
QKL HSD V ++ +P S I S + D V IW K++ H
Sbjct: 205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL----HK 260
Query: 580 FEKNLLRCAWSVSGLYVTAGSADKCVYIW 608
F + +WS++ + D V +W
Sbjct: 261 FNDVVWHVSWSITANILAVSGGDNKVTLW 289
Score = 38.5 bits (88), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 109 VISTF-TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV--AECGLHRLSGHKGVITDI 165
VI+T T H+ I Q D G RLAT S D + ++DV + + L GH+G + +
Sbjct: 4 VINTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV 63
Query: 166 RFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKT--MAAHLTEVWGVCVMREDSYLI--SG 221
+ + + S + D V IW + G K+ A H + V VC D LI G
Sbjct: 64 AWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACG 123
Query: 222 SNDAELKV 229
S+D + +
Sbjct: 124 SSDGAISL 131
Score = 37.4 bits (85), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 16/139 (11%)
Query: 530 HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589
H D + + G+ + + + D +V+I+D+R G+ + + GH E + + AW
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN--GGQILIADLRGH----EGPVWQVAW 65
Query: 590 S--VSGLYVTAGSADKCVYIW--DTTTRRIAYKLPGHNGSVNDVQFHPKEP--IIMSASS 643
+ + G + + S D+ V IW + T +++ GH+ SVN V + P + I+ SS
Sbjct: 66 AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSS 125
Query: 644 DKTI----YLGESPLHCDK 658
D I Y GE K
Sbjct: 126 DGAISLLTYTGEGQWEVKK 144
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 40/208 (19%)
Query: 429 LAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRGQLL-----IASGSDDCTVKVWDPRKKN- 481
L +W+LE + + +KGH +N+ D + + I +GS D TVKVWDPR+K+
Sbjct: 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151
Query: 482 -----QAVSMNNTYQVTSVAFNDT---AECVLTGGIDN-DIKMWDLRTNSVVQKLRGHSD 532
+ V N +VAF + E V+ G DN DIK++DLR + LR ++
Sbjct: 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA----LRWETN 207
Query: 533 TVTGL-SLSPDGSYI-----LSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586
G+ SL D I ++ +++ ++D+R P + V EK
Sbjct: 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS-------EKAHKS 260
Query: 587 CAWSV------SGLYVTAGSADKCVYIW 608
W V L++TAG A +++W
Sbjct: 261 TVWQVRHLPQNRELFLTAGGAGG-LHLW 287
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes From
Xenopus Laevis
Length = 357
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 76/195 (38%), Gaps = 42/195 (21%)
Query: 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTH 1137
Y H V +L + D T +G D +VKVW L KS AH V V P K
Sbjct: 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195
Query: 1138 YFFTTSKDGRVKQWD--------------ADNFERIVTLH-------------FFISLYG 1170
F + +DGR+ WD +D VT H +SL
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVN 255
Query: 1171 HKLP------------VLSLDMSYDST-LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217
K P + L SY S+ +A+ S D TV V D+ + + L+H D V
Sbjct: 256 IKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFV 314
Query: 1218 TGVTFVPKTHYFFTT 1232
TGV + P H FTT
Sbjct: 315 TGVAWSPLDHSKFTT 329
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 4/142 (2%)
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183
E VT V +V + S G V+ W+ E ++ F + Y H V +L + D
Sbjct: 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKF--AKYEHDDIVKTLSVFSD 150
Query: 1184 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWD 1242
T +G D +VKVW L KS AH V V P K F + +DGR+ WD
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 1243 ADNFERIVTLHFNPNVYLPLQI 1264
+ + F + +P +
Sbjct: 211 TRKPKPATRIDFCASDTIPTSV 232
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 11/164 (6%)
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463
H V L +DG + D ++ VWDL + +K HS+ VN +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 464 ASGSDDCTVKVWDPRKKNQAVSMN---NTYQVTSVAF----NDTAECVLTGGIDNDIKMW 516
S +D + +WD RK A ++ + TSV + +DT C G ++ +
Sbjct: 198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC---GDETGNVSLV 254
Query: 517 DLRTNSVVQKLRGHSDTVTGLSLSPDGS-YILSNAMDNTVRIWD 559
+++ Q HS +TGL+ S S ++ S + D TV + D
Sbjct: 255 NIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 1353 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTH 1411
Y H V +L + D T +G D +VKVW L KS AH V V P K
Sbjct: 136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195
Query: 1412 YFFTTSKDGRVKQWDADNFERIVTLHICS 1440
F + +DGR+ WD + + C+
Sbjct: 196 IFLSCGEDGRILLWDTRKPKPATRIDFCA 224
Score = 34.7 bits (78), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 96/242 (39%), Gaps = 45/242 (18%)
Query: 1214 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF----NPNVYLPLQI----- 1264
E VT V +V + S G V+ W+ E ++ F + ++ L +
Sbjct: 94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT 152
Query: 1265 QVVTGGGDKSVKLWQLELVSVNREADEETKDVS----------------RSHKVLSLLHT 1308
Q V+GG D SVK+W L +V + + + +V+ ++L L T
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL-LWDT 211
Query: 1309 RTLKLEEQV-LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP--------- 1358
R K ++ CA D+ +V+ F +SL K P
Sbjct: 212 RKPKPATRIDFCAS---DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH 268
Query: 1359 ---VLSLDMSYDST-LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1414
+ L SY S+ +A+ S D TV V D+ + + L +H D VTGV + P H F
Sbjct: 269 SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKF 327
Query: 1415 TT 1416
TT
Sbjct: 328 TT 329
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDL--RTNSVVQKLRG--HSDTVTGLSLSPDGSYIL 547
VT VA+ + + +L +++W++ + + +V K H D V LS+ DG+ +
Sbjct: 97 VTDVAWV-SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAV 155
Query: 548 SNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607
S D +V++WD+ ++ V + S + H+ E N + ++++ G D + +
Sbjct: 156 SGGKDFSVKVWDLS-----QKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGE-DGRILL 208
Query: 608 WDTTTRRIAYKL 619
WDT + A ++
Sbjct: 209 WDTRKPKPATRI 220
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 176 VVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMR---EDSYLISGSNDAELKVWNV 232
VS KD VK+WD K+ AH +EV CV +D+ +S D + +W+
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEV--NCVAACPGKDTIFLSCGEDGRILLWDT 211
Query: 233 R 233
R
Sbjct: 212 R 212
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 6/156 (3%)
Query: 403 GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462
GH G V L F DG + + S D+T VW ++G + ++ H+ V V +
Sbjct: 102 GHQGNVCSLSFQ-DGV-VISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 463 IASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS 522
+ S D T+K+W K + S + V +A D + D IK+ D T
Sbjct: 158 FLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIKLVDXHTGD 216
Query: 523 VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIW 558
V++ GH V + L P+G I+S D TVRIW
Sbjct: 217 VLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIW 251
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-K 1135
+L GH+ V SL S+ ++ +GS D+T KVW G +L AH SV V
Sbjct: 99 TLIGHQGNVCSL--SFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFS 154
Query: 1136 THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1195
+ F T S D +K W D + F + H V L + D I+ S D
Sbjct: 155 ENKFLTASADKTIKLWQNDK-----VIKTFSGI--HNDVVRHLAVVDDGHFISC-SNDGL 206
Query: 1196 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN--FERIVTL 1252
+K+ GD ++ HE V + +P + +D V+ W +N ++++TL
Sbjct: 207 IKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITL 264
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 129/331 (38%), Gaps = 79/331 (23%)
Query: 1097 IATGSGDRTVKVWGLDYG------------------DCHKSLLAHEDSVTGVTFVPKTHY 1138
+A+ S D TV++W D D K LL T + VP
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVP---L 88
Query: 1139 FFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198
F T+ +D +L GH+ V SL S+ ++ +GS D+T KV
Sbjct: 89 FATSGEDP------------------LYTLIGHQGNVCSL--SFQDGVVISGSWDKTAKV 128
Query: 1199 WGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVT-LHFNP 1256
W G +L AH SV V + F T S D +K W D + + +H +
Sbjct: 129 W--KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDV 186
Query: 1257 NVYLPL--QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314
+L + ++ D +KL D T DV R+++ E
Sbjct: 187 VRHLAVVDDGHFISCSNDGLIKL-----------VDXHTGDVLRTYE----------GHE 225
Query: 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLD--TFKFFISLYGHKLPVLSLDMSYDSTLIA 1372
V C ++ P+ +++ D TV+I+ + + K I+L + + S+D + +I
Sbjct: 226 SFVYCIKLLPNGDIVSCG-EDRTVRIWSKENGSLKQVITL--PAISIWSVDCXSNGDIIV 282
Query: 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403
GS D V+++ + KS A ED + G
Sbjct: 283 -GSSDNLVRIFSQE-----KSRWASEDEIKG 307
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 14/163 (8%)
Query: 358 LEGHGGEIFCSKY--HPDGQYIASSGYDRQIFIWSVYGECENIGVMSG-HTGAVMDLKFS 414
L+ H ++ +K + +++ +S D+ I +W + I SG H V L
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASA-DKTIKLWQ---NDKVIKTFSGIHNDVVRHLAVV 193
Query: 415 TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKV 474
DG H +CS D + + D G ++ +GH +FV + G I S +D TV++
Sbjct: 194 DDG-HFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD--IVSCGEDRTVRI 250
Query: 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAEC--VLTGGIDNDIKM 515
W K+N ++ T S+ D ++ G DN +++
Sbjct: 251 W--SKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRI 291
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-K 1409
+L GH+ V SL S+ ++ +GS D+T KVW G +L AH SV V
Sbjct: 99 TLIGHQGNVCSL--SFQDGVVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFS 154
Query: 1410 THYFFTTSKDGRVKQWDAD 1428
+ F T S D +K W D
Sbjct: 155 ENKFLTASADKTIKLWQND 173
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 882 QGHHSEV---RALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSV--CFVPG 936
Q H++ V + ++FS +N L ++ +K+W + ++T +G + V V
Sbjct: 139 QAHNASVWDAKVVSFS-ENKFLTASADKTIKLWQNDKV--IKTF-SGIHNDVVRHLAVVD 194
Query: 937 DRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGG 996
D H + + DG + +VD G++L H ++ + +LP+ +V+ G
Sbjct: 195 DGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG-----------DIVSCG 243
Query: 997 GDKSVKLWQLE 1007
D++V++W E
Sbjct: 244 EDRTVRIWSKE 254
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 22/218 (10%)
Query: 30 TLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQ 89
+L Q+G ++ + +W E +L+ + H A + + V S N +
Sbjct: 109 SLSFQDGVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAK---VVSFSEN----K 157
Query: 90 LAVAYTNGSLKTFSLDTTDVISTFTG-HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA 148
A + ++K + D VI TF+G H + + GH ++ S D I L D
Sbjct: 158 FLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISC-SNDGLIKLVDXHT 214
Query: 149 ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWG 208
L GH+ + I+ + +VS +D V+IW + G + + +W
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGD---IVSCGEDRTVRIWSKENGSLKQVITLPAISIWS 271
Query: 209 V-CVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDK 245
V C D +I GS+D +++++ +++S +ED+ K
Sbjct: 272 VDCXSNGD--IIVGSSDNLVRIFS-QEKSRWASEDEIK 306
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human
Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human
Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At 2.1
Angstroms Resolution: A Basis For The Design Of Specific
Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At 2.1
Angstroms Resolution: A Basis For The Design Of Specific
Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 49.3 bits (116), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 33/79 (41%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+P +FDARE+WPQC I ++ DQG+C SCW
Sbjct: 1 LPASFDAREQWPQCP-TIKEIRDQGSCGSCW----------------------------- 30
Query: 2234 WDKAISAASVMSDRICIQS 2252
A A +SDRICI +
Sbjct: 31 ---AFGAVEAISDRICIHT 46
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 48.9 bits (115), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSV 2405
H V ++G+ +S N PYW+ NS++ WGE G +I +G N C + +V
Sbjct: 162 HGVLLVGYNDAS-NPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAV 209
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 413 FSTDGCHIFTCSTDQTLAVWD--LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
F G H++ D +++ + G ++ K ++ + +RR L G+ +
Sbjct: 61 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFIL----GTTEG 116
Query: 471 TVKVWDPRKKNQ-AVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+KV D Q + + ++T + F + E +++ D +K+W ++ S + L G
Sbjct: 117 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 176
Query: 530 HSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
H TVT +++ G +LS ++D T+R+W+
Sbjct: 177 HRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGC 418
+ H EI K+ P G+ + SS D Q+ IWSV + N + GH V D+ G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 419 HIFTCSTDQTLAVWDLEKGQRI 440
++ + S D T+ +W+ G I
Sbjct: 192 NVLSASLDGTIRLWECGTGTTI 213
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHH 174
H S IT +++ P G L + S+D + +W V L GH+ +TDI + + +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN- 192
Query: 175 FVVSSAKDTFVKIWDADTGDCFKTM 199
V+S++ D +++W+ TG T
Sbjct: 193 -VLSASLDGTIRLWECGTGTTIHTF 216
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA 190
R G+ + DI + D H IT ++F P ++SS++D +KIW
Sbjct: 108 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSV 165
Query: 191 DTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVW 230
G +T+ H V + ++ ++S S D +++W
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 19/187 (10%)
Query: 1067 FFLDTFKFFISLYGHKLPVLS----LDMSYDSTLIATGSGDRTVKVWGLDY------GDC 1116
F+++ K + HK+ VL +D +T GS ++ G D+ D
Sbjct: 28 FYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG 87
Query: 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFISLYGHKLPV 1175
K +L D T + F + +G +K D++ N +R + H +
Sbjct: 88 SK-MLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-------QAHVSEI 139
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235
L + + S D +K+W + G ++L+ H +VT + + + + S D
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 1236 GRVKQWD 1242
G ++ W+
Sbjct: 200 GTIRLWE 206
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 1371 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
+ + S D +K+W + G ++L+ H +VT + + + + S DG ++ W+
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564
+ G + DIK+ D N + + H +T L P G ++S++ D ++IW ++
Sbjct: 110 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-- 167
Query: 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD----TTTRRIAYKLP 620
+ + GH+ + A G V + S D + +W+ TT K
Sbjct: 168 --GSNPRTLIGHR----ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 221
Query: 621 GHNG 624
H+G
Sbjct: 222 PHDG 225
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 413 FSTDGCHIFTCSTDQTLAVWD--LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470
F G H++ D +++ + G ++ K ++ + +RR L G+ +
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFIL----GTTEG 119
Query: 471 TVKVWDPRKKNQ-AVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529
+KV D Q + + ++T + F + E +++ D +K+W ++ S + L G
Sbjct: 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG 179
Query: 530 HSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559
H TVT +++ G +LS ++D T+R+W+
Sbjct: 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGC 418
+ H EI K+ P G+ + SS D Q+ IWSV + N + GH V D+ G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 419 HIFTCSTDQTLAVWDLEKGQRI 440
++ + S D T+ +W+ G I
Sbjct: 195 NVLSASLDGTIRLWECGTGTTI 216
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHH 174
H S IT +++ P G L + S+D + +W V L GH+ +TDI + + +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN- 195
Query: 175 FVVSSAKDTFVKIWDADTGDCFKTM 199
V+S++ D +++W+ TG T
Sbjct: 196 -VLSASLDGTIRLWECGTGTTIHTF 219
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA 190
R G+ + DI + D H IT ++F P ++SS++D +KIW
Sbjct: 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSV 168
Query: 191 DTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVW 230
G +T+ H V + ++ ++S S D +++W
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 74/187 (39%), Gaps = 19/187 (10%)
Query: 1067 FFLDTFKFFISLYGHKLPVLS----LDMSYDSTLIATGSGDRTVKVWGLDY------GDC 1116
F+++ K + HK+ VL +D +T GS ++ G D+ D
Sbjct: 31 FYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDG 90
Query: 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFISLYGHKLPV 1175
K +L D T + F + +G +K D++ N +R + H +
Sbjct: 91 SK-MLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-------QAHVSEI 142
Query: 1176 LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235
L + + S D +K+W + G ++L+ H +VT + + + + S D
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 1236 GRVKQWD 1242
G ++ W+
Sbjct: 203 GTIRLWE 209
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%)
Query: 1371 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426
+ + S D +K+W + G ++L+ H +VT + + + + S DG ++ W+
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 12/124 (9%)
Query: 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564
+ G + DIK+ D N + + H +T L P G ++S++ D ++IW ++
Sbjct: 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-- 170
Query: 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD----TTTRRIAYKLP 620
+ + GH+ + A G V + S D + +W+ TT K
Sbjct: 171 --GSNPRTLIGHR----ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN 224
Query: 621 GHNG 624
H+G
Sbjct: 225 PHDG 228
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Query: 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMS 1181
A ++ VTF+ +T T + G++K WD + +SL G ++P+ +D
Sbjct: 189 ADSSTLHAVTFL-RTPEILTVNSIGQLKIWDFRQQGNEPSQ--ILSLTGDRVPLHCVDRH 245
Query: 1182 YDST-LIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKT-HYFFTTSKDGRV 1238
+ ++ATG D + +W + G SLL AHE + V F P + FT S+DG +
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 1239 KQWDA 1243
WDA
Sbjct: 306 WHWDA 310
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYI-ASSGYDRQIFIWSVYGECENIGVMS 402
D + N + I+ L G + C HP+ Q++ A+ G D + IW V + ++
Sbjct: 218 DFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLK 277
Query: 403 GHTGAVMDLKF-STDGCHIFTCSTDQTLAVWDL-----EKGQRIKKMKGHSTFVN 451
H + ++ F ++ H+FTCS D +L WD EK + STF++
Sbjct: 278 AHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLS 332
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1075 FISLYGHKLPVLSLDMSYDST-LIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTF 1132
+SL G ++P+ +D + ++ATG D + +W + G SLL AHE + V F
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
Query: 1133 VPKT-HYFFTTSKDGRVKQWDA 1153
P + FT S+DG + WDA
Sbjct: 289 HPSNPEHLFTCSEDGSLWHWDA 310
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1349 FISLYGHKLPVLSLDMSYDST-LIATGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTF 1406
+SL G ++P+ +D + ++ATG D + +W + G SLL AHE + V F
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
Query: 1407 VPKT-HYFFTTSKDGRVKQWDA 1427
P + FT S+DG + WDA
Sbjct: 289 HPSNPEHLFTCSEDGSLWHWDA 310
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
Query: 420 IFTCSTDQTLAVWDLEK----GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475
I T ++ L +WD + +I + G ++ D Q ++A+G D + +W
Sbjct: 205 ILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
Query: 476 DPRKKNQAVSMNNTYQVT--SVAFNDT-AECVLTGGIDNDIKMWDLRTN 521
D R+ VS+ ++ V F+ + E + T D + WD T+
Sbjct: 265 DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTD 313
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 472 VKVWDPRKKNQAVSMNNTYQVTSVAFN------DTAECVLTGGIDNDIKMWDLRTNSV-V 524
+K+WD R++ S + V + + V TGG D + +WD+R ++ V
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 525 QKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF 580
L+ H + + P + ++ + + D ++ WD VP + + G F
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTF 330
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/320 (21%), Positives = 126/320 (39%), Gaps = 41/320 (12%)
Query: 354 PIMLLEGHGGEIFCS-KYHP--DGQYIASSGYDRQIFIWSVYGECEN----IGVMSGH-- 404
P++ GHG + + K+ P QY+ S ++ +W + E+ + V S
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 114
Query: 405 -TGAVMDLKFSTDGCHIFTCSTDQ----TLAVWDLEKGQRIKKMKGHSTFVNSCD----- 454
G + D+ + +G + + WD G + ++ GHS +N+C
Sbjct: 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR 172
Query: 455 PVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQ---VTSVAFN-DTAECVLTGGID 510
P R + G D V P K A + Q V V F+ D+ E V+T G D
Sbjct: 173 PXRSXTV----GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228
Query: 511 NDIKMWDLRTNSVVQKLRGHSDTVTG--LSLS-PDGSYILSNAMDNTVRIWDIRPYVPGE 567
I +D ++ ++ + + V G +LS D + D T+R+WD V
Sbjct: 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWD----VTTS 284
Query: 568 RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVN 627
+CV+ + + + + +G ++ S D + ++ + + GHN +
Sbjct: 285 KCVQKWTLDKQQLGNQQVGVVATGNGRIISL-SLDGTLNFYELGHDEVLKTISGHNKGIT 343
Query: 628 DVQFHPKEPIIMSASSDKTI 647
+ +P ++S S D I
Sbjct: 344 ALTVNP----LISGSYDGRI 359
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 46/158 (29%)
Query: 2 GLTKQYLRYVHEGSFNIIASPNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLL 61
G + ++L+Y+ + P +F +F GA + +WD+ ++
Sbjct: 236 GKSGEFLKYIEDDQ-----EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK----- 285
Query: 62 PGEKHEALLLPGEKHEVCQLSPNHDSSQLA------VAYTNGSLKTFSLDTT-------- 107
C D QL VA NG + + SLD T
Sbjct: 286 -----------------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 108 -DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW 144
+V+ T +GH IT + +P L +GS D I W
Sbjct: 329 DEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
++ H+V I+G+G + + YWL NS+ GWG G FKI R N C I
Sbjct: 275 KFTHAVLIVGYGNENGQD-YWLVKNSWGDGWGLDGYFKIARNANNHCGI 322
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 50/198 (25%)
Query: 2232 SVWDKAISAASVMSDRICIQSKGQ-VKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA 2290
S W A ++ S M+DRI I+ KG +LS Q++I C N C GG+
Sbjct: 65 SCW--AHASTSAMADRINIKRKGAWPSTLLSVQNVI-DCGNA---------GSCEGGNDL 112
Query: 2291 AAWMYWINAGLVDG--GDYGTHDVSMGRY-------------------IEGIGHAASVMG 2329
+ W Y G+ D +Y D ++ + +G S+ G
Sbjct: 113 SVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSG 172
Query: 2330 ---------SSNPEVNNFEKVIRLYSCEGSINPRYI------HSVKIIGWGKSSQNEPYW 2374
++ P RL + G I Y H V + GWG S E YW
Sbjct: 173 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTE-YW 231
Query: 2375 LCTNSYNQGWGEQGLFKI 2392
+ NS+ + WGE+G +I
Sbjct: 232 IVRNSWGEPWGERGWLRI 249
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 459 GQLLIASGSDDCTVKVWD-PRKKNQAVSMNNTYQ----VTSVAFNDTAECVLTGGIDNDI 513
G+ I SD V++W+ + VS Y+ V++V+ + ++G D I
Sbjct: 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572
K+WDL V+ R H+ VT ++ SP S LS + DN + +WD R P +
Sbjct: 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS 211
Query: 573 MSGHQHNFEKNLLRCAW--SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQ 630
G+ +L AW S ++V G + V + DT + H+ V +
Sbjct: 212 APGY---LPTSL---AWHPQQSEVFVF-GDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264
Query: 631 FHPKE-PIIMSASSDKTIYLGESPL 654
F P P + S S D ++ + +S L
Sbjct: 265 FSPHSVPFLASLSEDCSLAVLDSSL 289
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 4/142 (2%)
Query: 1124 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183
E V +T+V S G V+ W+ D E ++ F Y H V ++ +
Sbjct: 82 EAGVADLTWV-GERGILVASDSGAVELWELDENETLIVSKF--CKYEHDDIVSTVSVLSS 138
Query: 1184 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWD 1242
T +GS D +KVW L S AH VT V P K F + S+D R+ WD
Sbjct: 139 GTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
Query: 1243 ADNFERIVTLHFNPNVYLPLQI 1264
+ + + YLP +
Sbjct: 199 TRCPKPASQIGCSAPGYLPTSL 220
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 4/150 (2%)
Query: 404 HTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463
H V + + G + S D + VWDL + + + H+ V +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 464 ASGSDDCTVKVWD---PRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDND-IKMWDLR 519
S S+D + +WD P+ +Q Y TS+A++ V G +N + + D +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245
Query: 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549
+ S V HS VTGL SP L++
Sbjct: 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 57/155 (36%), Gaps = 4/155 (2%)
Query: 1079 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTH 1137
Y H V ++ + T +GS D +KVW L S AH VT V P K
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1197
F + S+D R+ WD + + Y LP S + G + TV
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGY---LPTSLAWHPQQSEVFVFGDENGTVS 240
Query: 1198 VWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTT 1232
+ C S H VTG+ F P + F +
Sbjct: 241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLAS 275
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 1353 YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTH 1411
Y H V ++ + T +GS D +KVW L S AH VT V P K
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 1412 YFFTTSKDGRVKQWD 1426
F + S+D R+ WD
Sbjct: 184 VFLSCSEDNRILLWD 198
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 92 VAYTNGSLKTFSLDTTD--VISTFTG--HKSAITVIQYDPLGHRLATGSKDTDIVLWDVV 147
VA +G+++ + LD + ++S F H ++ + G + +GSKD I +WD+
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
Query: 148 AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189
+ L H +T + F +S ++D + +WD
Sbjct: 158 QQVVLSSYRAHAAQVTCVAASPHKDSVF-LSCSEDNRILLWD 198
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 158 HKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVM---RE 214
H +++ + +S VS +KD +K+WD + AH +V CV +
Sbjct: 126 HDDIVSTVSVLSSGTQ--AVSGSKDICIKVWDLAQQVVLSSYRAHAAQV--TCVAASPHK 181
Query: 215 DSYLISGSNDAELKVWNVR 233
DS +S S D + +W+ R
Sbjct: 182 DSVFLSCSEDNRILLWDTR 200
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 50/198 (25%)
Query: 2232 SVWDKAISAASVMSDRICIQSKGQ-VKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA 2290
S W A ++ S M+DRI I+ KG +LS Q++I C N C GG+
Sbjct: 30 SCW--AHASTSAMADRINIKRKGAWPSTLLSVQNVI-DCGNA---------GSCEGGNDL 77
Query: 2291 AAWMYWINAGLVDG--GDYGTHDVSMGRY-------------------IEGIGHAASVMG 2329
+ W Y G+ D +Y D ++ + +G S+ G
Sbjct: 78 SVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSG 137
Query: 2330 ---------SSNPEVNNFEKVIRLYSCEGSINPRYI------HSVKIIGWGKSSQNEPYW 2374
++ P RL + G I Y H V + GWG S E YW
Sbjct: 138 REKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTE-YW 196
Query: 2375 LCTNSYNQGWGEQGLFKI 2392
+ NS+ + WGE+G +I
Sbjct: 197 IVRNSWGEPWGERGWLRI 214
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The Active
Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The Active
Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The Active
Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The Active
Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSI 2401
H+V +G+G+ + PYW+ NS+ WG G F I RG NMC +
Sbjct: 166 HAVLAVGYGEEN-GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGL 209
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl Sulfone
Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl Sulfone
Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor (Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl Sulfone
Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl Sulfone
Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl Sulfone
Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl Sulfone
Derived Inhibitor (Wrr483)
Length = 215
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
H V ++G+ S+ PYW+ NS+ WGE+G +I +G N C +++
Sbjct: 162 HGVLLVGYNDSAA-VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 44.7 bits (104), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
H V ++G+ S+ PYW+ NS+ WGE+G +I +G N C +++
Sbjct: 162 HGVLLVGYNDSAA-VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 2353 PRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIE 2402
P Y H+V I+G+G S+Q + YW+ NS++ WG+ G + G N+ IE
Sbjct: 168 PNY-HAVNIVGYG-STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus
Sativus At 1.3 A Resolution
Length = 222
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN----MCSIE 2402
H+V I+G+G + N YW+ NS+ WG G IRR N +C+I+
Sbjct: 162 HTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAID 211
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
H V ++G+ + PYW+ NS+ WGE+G +I +G N C +++
Sbjct: 162 HGVLLVGYNDGAA-VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
H V ++G+ + PYW+ NS+ WGE+G +I +G N C +++
Sbjct: 162 HGVLLVGYNDGAA-VPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 42.7 bits (99), Expect = 0.002, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR--GVNMCSI 2401
H V I+G+GK YW+ NS+ + WGEQG +++R G +C I
Sbjct: 157 HGVVIVGYGKD-----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGI 198
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 2349 GSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN----MCSI 2401
GS H V I+G+G + YW NS+ WGE+G ++ RG++ +C I
Sbjct: 154 GSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR---GVNMCSI 2401
H+V I+G+G + YW+ NS+ WGE+G +I+R GV C I
Sbjct: 162 HAVTIVGYGTEGGID-YWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR---GVNMCSI 2401
H+V I+G+G + YW+ NS+ WGE+G +I+R GV C I
Sbjct: 162 HAVTIVGYGTEGGID-YWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 28/226 (12%)
Query: 440 IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV----------SMNNT 489
+ + HS+ V + + ++ASG ++ + +WD K ++ SM++
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 490 YQVTSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVVQKL------RGHSDTVTGLSLSPD 542
+V S+A+N + A + G N +WDL+ V L G ++ + P
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 543 GSYILSNAM----DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598
S ++ A D ++ IWD+R + GHQ K +L W ++
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNA--NTPLQTLNQGHQ----KGILSLDWCHQDEHLLL 279
Query: 599 GSA-DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS 643
S D V +W+ + + P +F P+ P + + +S
Sbjct: 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 48/197 (24%)
Query: 377 IASSGYDRQIFIWSVYGECEN--------IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT 428
+AS G + +IFIW + E+ G V+ L ++ H+F +
Sbjct: 129 LASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188
Query: 429 LA-VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487
A +WDL + KK H ++ + +++ +V W P+ N
Sbjct: 189 FASIWDL----KAKKEVIHLSYTSPNSGIKQ----------QLSVVEWHPK--------N 226
Query: 488 NTYQVTSVAFNDTAECVLTGGIDND--IKMWDLR-TNSVVQKL-RGHSDTVTGLSL-SPD 542
+T T+ G DND I +WDLR N+ +Q L +GH + L D
Sbjct: 227 STRVATAT------------GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274
Query: 543 GSYILSNAMDNTVRIWD 559
+LS+ DNTV +W+
Sbjct: 275 EHLLLSSGRDNTVLLWN 291
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSI 2401
H+V ++G+G+ S + P+W NS+ WGE+G + + RG C +
Sbjct: 161 HAVLLVGYGQRS-DVPFWAIKNSWGTDWGEKGYYYLHRGSGACGV 204
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR 2394
H V ++G+G + + YW NS+ WGEQG ++ +
Sbjct: 167 HGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEK 204
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 40.4 bits (93), Expect = 0.012, Method: Composition-based stats.
Identities = 55/255 (21%), Positives = 90/255 (35%), Gaps = 84/255 (32%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE D R+ K + V +QG C SCW
Sbjct: 1 LPEQIDWRK-----KGAVTPVKNQGKCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S S + I++ + LS Q L+ +C + + C GG A+
Sbjct: 27 ---AFSTVSTVESINQIRTGNLIS--LSEQQLV----DCNKKNHG-----CKGGAFVYAY 72
Query: 2294 MYWINAGLVD-----------------------GGDYGTHDVSMGRYIEGIGHAASVMG- 2329
Y I+ G +D G G + + + SV+
Sbjct: 73 QYIIDNGGIDTEANYPYKAVQGPCRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAI 132
Query: 2330 -SSNPEVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388
+S+ + +++ I C +N H V I+G+ K YW+ NS+ + WGEQG
Sbjct: 133 DASSKQFQHYKSGIFSGPCGTKLN----HGVVIVGYWKD-----YWIVRNSWGRYWGEQG 183
Query: 2389 LFKIRR--GVNMCSI 2401
+++R G +C I
Sbjct: 184 YIRMKRVGGCGLCGI 198
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor
Larval Midgut
Length = 329
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFK-IRRGVNMCSI 2401
H V ++G+G S + YW+ NS+ GWGE G ++ +R N C I
Sbjct: 276 HGVLVVGYG-SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGI 320
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 39.7 bits (91), Expect = 0.023, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR---GVNMCSI 2401
H+V I+G+G + YW+ NS++ WGE+G +I R G C I
Sbjct: 162 HAVTIVGYGTEGGID-YWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability And
Substrate Specificity
Length = 215
Score = 39.3 bits (90), Expect = 0.025, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396
H V I+G+G S + YW+ NS+ Q WG QG + R V
Sbjct: 158 HGVVIVGYGTQS-GKNYWIVRNSWGQNWGNQGYIWMERNV 196
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Query: 402 SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM----KGHSTFVNSCDPV- 456
SGH V D+ + G H+ TCS+DQ + V+ L+K ++ + H + + + D
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 457 -RRGQLLIASGSDDCTVKVW--DP-------RKKNQAVSMNNT 489
G+ +IAS S D TVK+W DP R+ N+ ++N++
Sbjct: 66 PEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 107
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 114 TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS----GHKGVITDIRFMS 169
+GH + + YD G +AT S D I ++ + + LS H I I + S
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 170 QPGHHFVVSSAKDTFVKIWDAD 191
+ S++ D VK+W+ D
Sbjct: 66 PEYGRIIASASYDKTVKLWEED 87
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 16/103 (15%)
Query: 402 SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM----KGHSTFVNSCDPV- 456
SGH V D+ + G H+ TCS+DQ + V+ L+K ++ + H + + + D
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 457 -RRGQLLIASGSDDCTVKVW--DP-------RKKNQAVSMNNT 489
G+ +IAS S D TVK+W DP R+ N+ ++N++
Sbjct: 68 PEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 114 TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS----GHKGVITDIRFMS 169
+GH + + YD G +AT S D I ++ + + LS H I I + S
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 170 QPGHHFVVSSAKDTFVKIWDAD 191
+ S++ D VK+W+ D
Sbjct: 68 PEYGRIIASASYDKTVKLWEED 89
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 67/244 (27%)
Query: 360 GHGGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
G GG I K++P Q+ ASS E + G ++ + S+D
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASS--------------MEGTTRLQDFKGNILRVFASSDT 207
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+I+ CS D + S V + D V LL G + +W+
Sbjct: 208 INIWFCSLD----------------VSASSRMVVTGDNVGNVILLNMDGKE-----LWNL 246
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKLRG------- 529
R + +VT VA N + L T +D +K+WDLR ++RG
Sbjct: 247 RMHKK--------KVTHVALNPCCDWFLATASVDQTVKIWDLR------QVRGKASFLYS 292
Query: 530 --HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL--L 585
H V SPDG+ +L+ + +R++ + C + H H ++L +
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW----DCPLGLIPHPHRHFQHLTPI 348
Query: 586 RCAW 589
+ AW
Sbjct: 349 KAAW 352
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 44/193 (22%)
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429
HP + S G D ++ + + + I G+ +G G++ LKF+ + F S+
Sbjct: 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASS---- 184
Query: 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489
+E R++ KG+ L + + SD T+ +W S++ +
Sbjct: 185 ----MEGTTRLQDFKGNI-------------LRVFASSD--TINIW-------FCSLDVS 218
Query: 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549
V D V+ +D ++W+LR H VT ++L+P + L+
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRM---------HKKKVTHVALNPCCDWFLAT 268
Query: 550 A-MDNTVRIWDIR 561
A +D TV+IWD+R
Sbjct: 269 ASVDQTVKIWDLR 281
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 16/103 (15%)
Query: 402 SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPV- 456
SGH V D+ + G H+ TCS+DQ + V+ L+K + + H + + + D
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 457 -RRGQLLIASGSDDCTVKVW--DP-------RKKNQAVSMNNT 489
G+ +IAS S D TVK+W DP R+ N+ ++N++
Sbjct: 68 PEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS 109
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 114 TGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLS----GHKGVITDIRFMS 169
+GH + + YD G +AT S D I ++ + + LS H I I + S
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 170 QPGHHFVVSSAKDTFVKIWDAD 191
+ S++ D VK+W+ D
Sbjct: 68 PEYGRIIASASYDKTVKLWEED 89
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.9 bits (89), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 67/244 (27%)
Query: 360 GHGGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
G GG I K++P Q+ ASS E + G ++ + S+D
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASS--------------MEGTTRLQDFKGNILRVFASSDT 207
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+I+ CS D + S V + D V LL G + +W+
Sbjct: 208 INIWFCSLD----------------VSASSRMVVTGDNVGNVILLNMDGKE-----LWNL 246
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKLRG------- 529
R + +VT VA N + L T +D +K+WDLR ++RG
Sbjct: 247 RMHKK--------KVTHVALNPCCDWFLATASVDQTVKIWDLR------QVRGKASFLYS 292
Query: 530 --HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL--L 585
H V SPDG+ +L+ + +R++ + C + H H ++L +
Sbjct: 293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW----DCPLGLIPHPHRHFQHLTPI 348
Query: 586 RCAW 589
+ AW
Sbjct: 349 KAAW 352
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 44/193 (22%)
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429
HP + S G D ++ + + + I G+ +G G++ LKF+ + F S+
Sbjct: 131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASS---- 184
Query: 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489
+E R++ KG+ L + + SD T+ +W S++ +
Sbjct: 185 ----MEGTTRLQDFKGNI-------------LRVFASSD--TINIW-------FCSLDVS 218
Query: 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549
V D V+ +D ++W+LR H VT ++L+P + L+
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRM---------HKKKVTHVALNPCCDWFLAT 268
Query: 550 A-MDNTVRIWDIR 561
A +D TV+IWD+R
Sbjct: 269 ASVDQTVKIWDLR 281
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.9 bits (89), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 92/244 (37%), Gaps = 67/244 (27%)
Query: 360 GHGGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417
G GG I K++P Q+ ASS E + G ++ + S+D
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASS--------------MEGTTRLQDFKGNILRVFASSDT 208
Query: 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477
+I+ CS D + S V + D V LL G + +W+
Sbjct: 209 INIWFCSLD----------------VSASSRMVVTGDNVGNVILLNMDGKE-----LWNL 247
Query: 478 RKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKLRG------- 529
R + +VT VA N + L T +D +K+WDLR ++RG
Sbjct: 248 RMHKK--------KVTHVALNPCCDWFLATASVDQTVKIWDLR------QVRGKASFLYS 293
Query: 530 --HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL--L 585
H V SPDG+ +L+ + +R++ + C + H H ++L +
Sbjct: 294 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW----DCPLGLIPHPHRHFQHLTPI 349
Query: 586 RCAW 589
+ AW
Sbjct: 350 KAAW 353
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 44/193 (22%)
Query: 371 HPDGQYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429
HP + S G D ++ + + + I G+ +G G++ LKF+ + F S+
Sbjct: 132 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG--GSITGLKFNPLNTNQFYASS---- 185
Query: 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489
+E R++ KG+ L + + SD T+ +W S++ +
Sbjct: 186 ----MEGTTRLQDFKGNI-------------LRVFASSD--TINIW-------FCSLDVS 219
Query: 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN 549
V D V+ +D ++W+LR H VT ++L+P + L+
Sbjct: 220 ASSRMVVTGDNVGNVILLNMDGK-ELWNLRM---------HKKKVTHVALNPCCDWFLAT 269
Query: 550 A-MDNTVRIWDIR 561
A +D TV+IWD+R
Sbjct: 270 ASVDQTVKIWDLR 282
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At
1.7 Angstroms Resolution By Fast Fourier Least-Squares
Methods
Length = 220
Score = 38.5 bits (88), Expect = 0.048, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR---GVNMCSI 2401
H++ I+G+G + YW+ NS++ WGE+G +I R G C I
Sbjct: 162 HAIVIVGYGTEGGVD-YWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 38.5 bits (88), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSIEDSV 2405
H++ ++G+G S N+ YWL NS+ + WG G K+ RR N C I +
Sbjct: 163 HAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGIASAA 212
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease
Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease
Ervatamin C
Length = 208
Score = 38.1 bits (87), Expect = 0.063, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 90/256 (35%), Gaps = 86/256 (33%)
Query: 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSV 2233
+PE D R+ K + V +QG+C SCW
Sbjct: 1 LPEQIDWRK-----KGAVTPVKNQGSCGSCW----------------------------- 26
Query: 2234 WDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293
A S S + I++ + LS Q L+ +C + + C+GG A+
Sbjct: 27 ---AFSTVSTVESINQIRTGNLIS--LSEQELV----DCDKKNHG-----CLGGAFVFAY 72
Query: 2294 MYWINAGLVDGGDYGTHDVSMGRYIEGIGHAASVMGS----------------------- 2330
Y IN G +D T + ++G AAS + S
Sbjct: 73 QYIINNGGID-----TQANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQP 127
Query: 2331 SNPEVNNFEKVIRLYSC---EGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQ 2387
S ++ + YS G + H V I+G+ + YW+ NS+ + WGE+
Sbjct: 128 STVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGYQAN-----YWIVRNSWGRYWGEK 182
Query: 2388 GLFKIRR--GVNMCSI 2401
G ++ R G +C I
Sbjct: 183 GYIRMLRVGGCGLCGI 198
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.7 bits (86), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTD 416
GHG I K+HP D + S D + +W++ + G + GH V+ +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMK 444
G I +C D +L +W + + + +K
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 581 EKNLLRCAWSVSG-----LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
++N CAW+ L AGS + I + T + GH ++N+++FHP++
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 163
Query: 636 P-IIMSASSDKTIYL 649
P +++S S D + L
Sbjct: 164 PNLLLSVSKDHALRL 178
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 1091 SYDST----LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKD 1145
+YDS L+A +++ C K + H +++ + F P+ + + SKD
Sbjct: 114 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 173
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ W N + + F + GH+ VLS D I + D ++K+W ++
Sbjct: 174 HALRLW---NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 504 VLTGGIDNDIKMWDLRTNSVVQ---KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+L+ D+ +++W+++T+++V + GH D V G I+S MD+++++W I
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 90 LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-HRLATGSKDTDIVLWDVVA 148
LAVA + G ++ + T I + GH +AI +++ P + L + SKD + LW++
Sbjct: 124 LAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Query: 149 ECGLHRLSGHKG 160
+ + G +G
Sbjct: 184 DTLVAIFGGVEG 195
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 37.7 bits (86), Expect = 0.071, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN 2397
H V ++G+G +S N YWL NS+ WG G KI + N
Sbjct: 164 HGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 37.7 bits (86), Expect = 0.071, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN 2397
H V ++G+G +S N YWL NS+ WG G KI + N
Sbjct: 164 HGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 37.7 bits (86), Expect = 0.082, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 2357 HSVKIIGWGKSSQNE----PYWLCTNSYNQGWGEQGLFKI 2392
H+V I+G+G +E YW+ NS+ WG++G FK+
Sbjct: 200 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 37.7 bits (86), Expect = 0.083, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 2357 HSVKIIGWGKSSQNE----PYWLCTNSYNQGWGEQGLFKI 2392
H+V I+G+G +E YW+ NS+ WG++G FK+
Sbjct: 199 HAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.7 bits (86), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTD 416
GHG I K+HP D + S D + +W++ + G + GH V+ +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMK 444
G I +C D +L +W + + + +K
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 581 EKNLLRCAWSVSG-----LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
++N CAW+ L AGS + I + T + GH ++N+++FHP++
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 122
Query: 636 P-IIMSASSDKTIYL 649
P +++S S D + L
Sbjct: 123 PNLLLSVSKDHALRL 137
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 1091 SYDST----LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKD 1145
+YDS L+A +++ C K + H +++ + F P+ + + SKD
Sbjct: 73 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 132
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ W N + + F + GH+ VLS D I + D ++K+W ++
Sbjct: 133 HALRLW---NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 504 VLTGGIDNDIKMWDLRTNSVVQ---KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+L+ D+ +++W+++T+++V + GH D V G I+S MD+++++W I
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 74 EKHEVCQLSPNHDSSQ--LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-H 130
E C + + ++S LAVA + G ++ + T I + GH +AI +++ P +
Sbjct: 65 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 124
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKG 160
L + SKD + LW++ + + G +G
Sbjct: 125 LLLSVSKDHALRLWNIQTDTLVAIFGGVEG 154
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTD 416
GHG I K+HP D + S D + +W++ + G + GH V+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMK 444
G I +C D +L +W + + + +K
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 581 EKNLLRCAWSVSG-----LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
++N CAW+ L AGS + I + T + GH ++N+++FHP++
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 126
Query: 636 P-IIMSASSDKTIYL 649
P +++S S D + L
Sbjct: 127 PNLLLSVSKDHALRL 141
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 1091 SYDST----LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKD 1145
+YDS L+A +++ C K + H +++ + F P+ + + SKD
Sbjct: 77 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 136
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ W N + + F + GH+ VLS D I + D ++K+W ++
Sbjct: 137 HALRLW---NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 504 VLTGGIDNDIKMWDLRTNSVVQ---KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+L+ D+ +++W+++T+++V + GH D V G I+S MD+++++W I
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 74 EKHEVCQLSPNHDSSQ--LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-H 130
E C + + ++S LAVA + G ++ + T I + GH +AI +++ P +
Sbjct: 69 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 128
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKG 160
L + SKD + LW++ + + G +G
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTD 416
GHG I K+HP D + S D + +W++ + G + GH V+ +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMK 444
G I +C D +L +W + + + +K
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 581 EKNLLRCAWSVSG-----LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
++N CAW+ L AGS + I + T + GH ++N+++FHP++
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 127
Query: 636 P-IIMSASSDKTIYL 649
P +++S S D + L
Sbjct: 128 PNLLLSVSKDHALRL 142
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 504 VLTGGIDNDIKMWDLRTNSVVQ---KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+L+ D+ +++W+++T+++V + GH D V G I+S MD+++++W I
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 1091 SYDST----LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKD 1145
+YDS L+A +++ C K + H +++ + F P+ + + SKD
Sbjct: 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 137
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ W N + + F + GH+ VLS D I + D ++K+W ++
Sbjct: 138 HALRLW---NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 74 EKHEVCQLSPNHDSSQ--LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-H 130
E C + + ++S LAVA + G ++ + T I + GH +AI +++ P +
Sbjct: 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 129
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKG 160
L + SKD + LW++ + + G +G
Sbjct: 130 LLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 360 GHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGE--CENIGVMSGHTGAVMDLKFSTD 416
GHG I K+HP D + S D + +W++ + G + GH V+ +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 417 GCHIFTCSTDQTLAVWDLEKGQRIKKMK 444
G I +C D +L +W + + + +K
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 581 EKNLLRCAWSVSG-----LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKE 635
++N CAW+ L AGS + I + T + GH ++N+++FHP++
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSR-GIIRIINPITMQCIKHYVGHGNAINELKFHPRD 126
Query: 636 P-IIMSASSDKTIYL 649
P +++S S D + L
Sbjct: 127 PNLLLSVSKDHALRL 141
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 1091 SYDST----LIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKD 1145
+YDS L+A +++ C K + H +++ + F P+ + + SKD
Sbjct: 77 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD 136
Query: 1146 GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202
++ W N + + F + GH+ VLS D I + D ++K+W ++
Sbjct: 137 HALRLW---NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 504 VLTGGIDNDIKMWDLRTNSVVQ---KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560
+L+ D+ +++W+++T+++V + GH D V G I+S MD+++++W I
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 74 EKHEVCQLSPNHDSSQ--LAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLG-H 130
E C + + ++S LAVA + G ++ + T I + GH +AI +++ P +
Sbjct: 69 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPN 128
Query: 131 RLATGSKDTDIVLWDVVAECGLHRLSGHKG 160
L + SKD + LW++ + + G +G
Sbjct: 129 LLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
V S++FND+ E + + G D ++ WD++T + L H D +
Sbjct: 304 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-------KNQAVSMNNTYQVTSVAFND 499
S F S D RG LIA+G ++ TV++ + ++Q +NN+ + SV F+
Sbjct: 196 SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 253
Query: 500 TAECVLTGGIDND---IKMWDLRTNSVVQKLR-------------GHSDTVTGLSLSPDG 543
+ N I +++ + L HS V LS + G
Sbjct: 254 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 313
Query: 544 SYILSNAMDNTVRIWDIR 561
+ S D +R WD++
Sbjct: 314 ETLCSAGWDGKLRFWDVK 331
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity
Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With
Fragments Of The Trypanosoma Brucei Cysteine Protease
Inhibitor Icp
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P-
Nitroanilide Complex At 1.7 Angstroms Resolution:
Noncovalent Binding Mode Of A Common Sequence Of
Endogenous Thiol Protease Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With Clik148(Cathepsin
L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 159 HAVAAVGYGPN-----YILIKNSWGTGWGENGYIRIKRG 192
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 492 VTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV 534
V S++FND+ E + + G D ++ WD++T + L H D +
Sbjct: 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 447 STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-------KNQAVSMNNTYQVTSVAFND 499
S F S D RG LIA+G ++ TV++ + ++Q +NN+ + SV F+
Sbjct: 186 SQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 243
Query: 500 TAECVLTGGIDND---IKMWDLRTNSVVQKLR-------------GHSDTVTGLSLSPDG 543
+ N I +++ + L HS V LS + G
Sbjct: 244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303
Query: 544 SYILSNAMDNTVRIWDIR 561
+ S D +R WD++
Sbjct: 304 ETLCSAGWDGKLRFWDVK 321
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl
Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In Compl
Chondroitin-4-Sulfate
Length = 215
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIED 2403
H+V +G+G+S N+ +W+ NS+ + WG G K+ R N C I +
Sbjct: 162 HAVLAVGYGESKGNK-HWIIKNSWGENWGMGGYIKMARNKNNACGIAN 208
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 2347 CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
C SI+ H+V +G+G Y L NS+ GWGE G +I+RG
Sbjct: 153 CGTSID----HAVAAVGYGND-----YILIKNSWGTGWGEGGYIRIKRG 192
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 2353 PRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
P Y H+V I+G+ ++Q YW+ NS++ WG+ G +++ IE+
Sbjct: 167 PNY-HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 215
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 36.6 bits (83), Expect = 0.18, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 2353 PRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
P Y H+V I+G+ ++Q YW+ NS++ WG+ G +++ IE+
Sbjct: 167 PNY-HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 215
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 36.6 bits (83), Expect = 0.19, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 2353 PRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
P Y H+V I+G+ ++Q YW+ NS++ WG+ G +++ IE+
Sbjct: 167 PNY-HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 215
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica
Length = 310
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFK-IRRGVNMCSI 2401
R H+V +G+G + YW+ NS+ WGE+G + +R NMC I
Sbjct: 250 RVNHAVLAVGYGTQGGTD-YWIVKNSWGLSWGERGYIRMVRNRGNMCGI 297
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 201 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 249
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 36.2 bits (82), Expect = 0.23, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 2348 EGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395
EG H+V +G+GK+ Y L NS+ WGE+G +I+R
Sbjct: 150 EGPCGTNTDHAVTAVGYGKT-----YLLLKNSWGPNWGEKGYIRIKRA 192
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 2349 GSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396
GS N H++ ++G+G + ++ +W+ NS+ + WGE G + R +
Sbjct: 153 GSCNISANHALTVVGYG-TENDKDFWIVKNSWGKNWGESGYIRAERNI 199
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 157 GHKGVITDIRFMSQP-GHHFVVSSAKDTFVKIWDADTGDCF---KTMAAHLTEVWGVCVM 212
GH ++TD+ + GH F+++S +D +KI + CF K + H V +C
Sbjct: 193 GHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI--SHYPQCFIVDKWLFGHKHFVSSICCG 250
Query: 213 REDSYLISGSNDAELKVWNVRDRSDIDTED 242
+ D L+S D ++ W+ + ++ T D
Sbjct: 251 K-DYLLLSAGGDDKIFAWDWKTGKNLSTFD 279
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 35.4 bits (80), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396
H+V +G+G + Y L NS+ GWGE G +I+RG
Sbjct: 310 HAVAAVGYGPN-----YILIRNSWGTGWGENGYIRIKRGT 344
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der
P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 2353 PRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403
P Y H+V I+G+ ++Q YW+ NS++ WG+ G +++ IE+
Sbjct: 247 PNY-HAVNIVGY-SNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEE 295
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 255 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 306
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 35.0 bits (79), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG------- 437
Q+F+ S+ G + +G+V+ + TD + C D +++ L G
Sbjct: 132 QLFVSSIRGAT----TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 187
Query: 438 ------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR----KKNQAVSMN 487
I K K H V + R L+A+ S D TVK+WD R K + M
Sbjct: 188 LLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP 247
Query: 488 NTYQVTSVAFNDT-AECVLTGGIDNDIKMW 516
+ V + FN T + +LT N+I+++
Sbjct: 248 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 277
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 491 QVTSVAFNDTAECVL-TGGIDNDIKMWDLRT----NSVVQKLRGHSDTVTGLSLSP-DGS 544
+VT FN + ++ T +D +K+WDLR NS + ++ H V +P D +
Sbjct: 205 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 263
Query: 545 YILSNAMDNTVRIW 558
+L+ N +R++
Sbjct: 264 KLLTTDQRNEIRVY 277
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 35.0 bits (79), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 22/150 (14%)
Query: 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKG------- 437
Q+F+ S+ G + +G+V+ + TD + C D +++ L G
Sbjct: 133 QLFVSSIRGAT----TLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188
Query: 438 ------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR----KKNQAVSMN 487
I K K H V + R L+A+ S D TVK+WD R K + M
Sbjct: 189 LLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP 248
Query: 488 NTYQVTSVAFNDT-AECVLTGGIDNDIKMW 516
+ V + FN T + +LT N+I+++
Sbjct: 249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVY 278
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 491 QVTSVAFNDTAECVL-TGGIDNDIKMWDLRT----NSVVQKLRGHSDTVTGLSLSP-DGS 544
+VT FN + ++ T +D +K+WDLR NS + ++ H V +P D +
Sbjct: 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDST 264
Query: 545 YILSNAMDNTVRIW 558
+L+ N +R++
Sbjct: 265 KLLTTDQRNEIRVY 278
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 158 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1
Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1
Binding Elements
Length = 222
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 159 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 210
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 158 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 160 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 211
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 158 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
N EV +Y++ N VQ + L+ H G++ + PD I + G D
Sbjct: 29 NHEVHIYEKSGNKWVQ---------------VHELKEHNGQVTGVDWAPDSNRIVTCGTD 73
Query: 384 RQIFIWSVYGE 394
R ++W++ G
Sbjct: 74 RNAYVWTLKGR 84
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423
I C ++ D IA + ++ I+ G + + + H G V + ++ D I TC
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 424 STDQTLAVWDLEKGQRIK 441
TD+ VW L KG+ K
Sbjct: 71 GTDRNAYVWTL-KGRTWK 87
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 34.7 bits (78), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSI 2401
SC ++N H V ++G+G + E YWL NS+ +GE+G ++ R N C I
Sbjct: 157 SCTQNVN----HGVLVVGYGDLNGKE-YWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.3 bits (77), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYD 383
N EV +Y++ N VQ + L+ H G++ + PD I + G D
Sbjct: 29 NHEVHIYEKSGNKWVQ---------------VHELKEHNGQVTGIDWAPDSNRIVTCGTD 73
Query: 384 RQIFIWSVYGE 394
R ++W++ G
Sbjct: 74 RNAYVWTLKGR 84
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTC 423
I C ++ D IA + ++ I+ G + + + H G V + ++ D I TC
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 424 STDQTLAVWDLEKGQRIK 441
TD+ VW L KG+ K
Sbjct: 71 GTDRNAYVWTL-KGRTWK 87
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 34.3 bits (77), Expect = 0.89, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 2348 EGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR 2394
+G + H+V +G+G +S + Y + NS+ WGE+G +++R
Sbjct: 150 DGPCGTKLDHAVTAVGYG-TSDGKNYIIIKNSWGPNWGEKGYMRLKR 195
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 211
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin,
In Complex With Human Cathepsin L
Length = 221
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 164 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 212
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 211
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition
Of Human Cathepsin L By Their Respective Dipeptidyl
Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 164 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 212
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 211
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study Of
Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 163 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 211
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S N YWL NS+ + WG G K+ RR N C I
Sbjct: 259 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 307
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 164 HAVLAVGYGIQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIAN 210
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 162 HAVLAVGYGIQKGNK-HWIIKNSWGESWGNKGYILMARNKNNACGIAN 208
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine
Aldehyde
Length = 214
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 161 HAVLAVGYGIQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIAN 207
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 160 HAVLAVGYGIQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIAN 206
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K
In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K In
Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K In
Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K In
Complex With A Covalent Benzyloxybenzoylcarbohydrazide
Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K In
Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine Inhibitor
With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 162 HAVLAVGYGIQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIAN 208
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound
To Cathepsin K
Length = 215
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G + N+ +W+ NS+ + WG G + R N C I +
Sbjct: 162 HAVLAVGYGIQAGNK-HWIIKNSWGESWGNAGYILMARNKNNACGIAN 208
>pdb|4H5I|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5I|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P1 Form)
pdb|4H5J|A Chain A, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
pdb|4H5J|B Chain B, Crystal Structure Of The Guanine Nucleotide Exchange
Factor Sec12 (P64 Form)
Length = 365
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 492 VTSVAFNDTAECVLTGGIDNDI---KMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS 548
+TS + E + DN I K+ DL + + + + HS +T +++SPD +Y+ S
Sbjct: 272 ITSXDVDXKGELAVLASNDNSIALVKLKDLSXSKIFK--QAHSFAITEVTISPDSTYVAS 329
Query: 549 NAMDNTVRI 557
+ NT+ I
Sbjct: 330 VSAANTIHI 338
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR 2394
H V I+G+G S YW+ NS+ + WG G +I+R
Sbjct: 168 HFVLIVGYG-SEDGVDYWIAKNSWGEDWGIDGYIRIQR 204
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S + YWL NS+ + WG G K+ RR N C I
Sbjct: 163 HGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 211
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 46/158 (29%)
Query: 2 GLTKQYLRYVHEGSFNIIASPNCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLL 61
G + ++L+Y+ + P +F +F GA + +WD+ ++
Sbjct: 236 GKSGEFLKYIEDDQ-----EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK----- 285
Query: 62 PGEKHEALLLPGEKHEVCQLSPNHDSSQLA------VAYTNGSLKTFSLDTT-------- 107
C D QL VA NG + + SLD T
Sbjct: 286 -----------------CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328
Query: 108 -DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLW 144
+V+ T +GH IT + +P L +GS D I+ W
Sbjct: 329 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 60/280 (21%)
Query: 354 PIMLLEGHGGEIFCS-KYHP--DGQYIASSGYDRQIFIWSVYGECEN----IGVMSGH-- 404
P++ GHG + + K+ P QY+ S ++ +W + E+ + V S
Sbjct: 55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV 114
Query: 405 -TGAVMDLKFSTDGCHIFTCSTDQ----TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459
G + D+ + +G + + WD G + ++ GHS +N+C +
Sbjct: 115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSR 172
Query: 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519
+ + DD +V YQ F+ + R
Sbjct: 173 PMRSMTVGDDGSVVF---------------YQGPPFKFSASD-----------------R 200
Query: 520 TNSVVQKLRGHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578
T+ V + SPD G ++++ D + +D + GE +K + Q
Sbjct: 201 TH------HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS---GE-FLKYIEDDQE 250
Query: 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYK 618
+ + +W S + T G AD + +WD TT + K
Sbjct: 251 PVQGGIFALSWLDSQKFATVG-ADATIRVWDVTTSKCVQK 289
>pdb|2QE7|A Chain A, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|B Chain B, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|C Chain C, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 502
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 2207 HQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQ 2255
H+P G+K + S I G+GQ R L + D+ ++ D I I KGQ
Sbjct: 143 HEPLQTGIKAIDSMIPIGRGQ-RELIIGDRQTGKTTIAIDTI-INQKGQ 189
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 2357 HSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKI---RRGVNMCSI 2401
H V ++G+G S YWL NS+ + WG G K+ RR N C I
Sbjct: 255 HGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI 303
>pdb|2OAJ|A Chain A, Crystal Structure Of Sro7 From S. Cerevisiae
Length = 902
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 19/162 (11%)
Query: 309 IDTTQELRTRSMKRKNDEVTVYDREKN----YKVQKVQKDVGRTSNLFAPIMLLEGHG-- 362
IDT L + +N + VYD +++ +K+ +QK + +PI+ ++ +
Sbjct: 104 IDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD 163
Query: 363 -GEIFCSKYHPDGQYIASSGYDRQIFIWSV--------YGECENIGVMSGHTGAVMDLKF 413
G + S + Y +Q FI+ + + E N T V+ +
Sbjct: 164 IGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTN----EKRTPKVIQSLY 219
Query: 414 STDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDP 455
+ HI T D +L WD G I T +N P
Sbjct: 220 HPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQP 261
>pdb|2J9O|A Chain A, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|B Chain B, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|C Chain C, Structure Of Pbp-A, L158e Mutant
pdb|2J9O|D Chain D, Structure Of Pbp-A, L158e Mutant
pdb|2JBF|A Chain A, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|B Chain B, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|C Chain C, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
pdb|2JBF|D Chain D, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G
Length = 298
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 20/120 (16%)
Query: 1460 ASNDIAELLMECLATMKEYEVECKEMTAMGKPPPSLPPIMKALNVTSPRDYLMTVLSRIR 1519
A+N I + L ++++ E T + P P MK N TSPRD L T++ +I
Sbjct: 126 ATNMIIDRLGGAAELNQQFQEWGLENTVINNPEPD----MKGTNTTSPRD-LATLMLKIG 180
Query: 1520 STDLLRHCQRFLVTGVLRKAYSTRLSKFERGQKKLIAS---------------DCPNGSK 1564
++L R + ++R+ + L G+ IA D PNG +
Sbjct: 181 QGEILSPRSRDRLLDIMRRTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQR 240
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 2348 EGSINPRYIHSVKIIGWG---------KSSQNEPYWLCTNSYNQGWGEQGLFKIR 2393
+G + H+V ++G+G K + Y++ NS+ Q WGE+G I
Sbjct: 164 DGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 218
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 2357 HSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG-LFKIRRGVNMCSIED 2403
H+V +G+G N+ +W+ NS+ + WG +G + R N C I +
Sbjct: 261 HAVLAVGYGIQKGNK-HWIIKNSWGENWGNKGYILMARNKNNACGIAN 307
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 31.2 bits (69), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 2348 EGSINPRYIHSVKIIGWG---------KSSQNEPYWLCTNSYNQGWGEQGLFKIR 2393
+G + H+V ++G+G K + Y++ NS+ Q WGE+G I
Sbjct: 165 DGECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIE 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,972,661
Number of Sequences: 62578
Number of extensions: 2617294
Number of successful extensions: 10568
Number of sequences better than 100.0: 217
Number of HSP's better than 100.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 6007
Number of HSP's gapped (non-prelim): 1736
length of query: 2435
length of database: 14,973,337
effective HSP length: 115
effective length of query: 2320
effective length of database: 7,776,867
effective search space: 18042331440
effective search space used: 18042331440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)