Query psy4869
Match_columns 2435
No_of_seqs 1763 out of 9808
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:49:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4869.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4869hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 1.2E-58 4E-63 633.0 85.4 568 355-1242 9-577 (577)
2 2ymu_A WD-40 repeat protein; u 100.0 2.4E-58 8.3E-63 629.9 86.1 570 522-1426 7-577 (577)
3 1nr0_A Actin interacting prote 100.0 9E-57 3.1E-61 617.8 75.2 561 77-1006 20-609 (611)
4 1nr0_A Actin interacting prote 100.0 9.7E-57 3.3E-61 617.5 74.5 534 357-1154 54-610 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 3.8E-54 1.3E-58 642.6 70.3 623 487-1428 613-1248(1249)
6 3sfz_A APAF-1, apoptotic pepti 100.0 5.1E-54 1.7E-58 641.3 69.2 621 355-1244 608-1248(1249)
7 1pgu_A Actin interacting prote 100.0 1.4E-51 4.8E-56 567.0 70.9 521 357-1155 58-614 (615)
8 1pgu_A Actin interacting prote 100.0 3.4E-51 1.2E-55 563.1 68.2 550 73-1007 16-613 (615)
9 2oaj_A Protein SNI1; WD40 repe 100.0 6.6E-47 2.2E-51 538.2 62.6 611 400-1256 12-794 (902)
10 2oaj_A Protein SNI1; WD40 repe 100.0 2.1E-46 7.3E-51 532.9 62.1 556 21-701 15-786 (902)
11 3hhi_A Cathepsin B-like cystei 100.0 7.7E-46 2.6E-50 453.9 6.2 230 2139-2415 33-317 (325)
12 3mkq_A Coatomer beta'-subunit; 100.0 4E-40 1.4E-44 469.2 49.4 438 70-651 8-502 (814)
13 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-38 5.4E-43 452.8 64.4 563 354-1202 5-600 (814)
14 3tnx_A Papain; hydrolase, cyto 100.0 4.2E-43 1.4E-47 430.6 13.8 215 2136-2407 110-359 (363)
15 3pbh_A Procathepsin B; thiol p 100.0 3.2E-44 1.1E-48 439.4 3.0 198 2172-2413 62-317 (317)
16 3pdf_A Cathepsin C, dipeptidyl 100.0 7.3E-43 2.5E-47 440.2 7.9 234 2137-2413 166-438 (441)
17 3qt4_A Cathepsin-L-like midgut 100.0 3.2E-42 1.1E-46 421.2 12.9 221 2135-2408 74-327 (329)
18 3qj3_A Cathepsin L-like protei 100.0 3.5E-42 1.2E-46 422.6 12.8 222 2136-2408 70-329 (331)
19 1cs8_A Human procathepsin L; p 100.0 5.2E-42 1.8E-46 419.7 11.2 223 2136-2407 59-313 (316)
20 1by8_A Protein (procathepsin K 100.0 2.3E-42 7.7E-47 422.5 7.4 221 2136-2408 59-312 (314)
21 2c0y_A Procathepsin S; proenzy 100.0 8.6E-42 2.9E-46 417.6 11.4 223 2136-2408 60-313 (315)
22 1pci_A Procaricain; zymogen, h 100.0 1.4E-41 4.7E-46 416.4 12.7 218 2136-2407 66-318 (322)
23 1xkg_A DER P I, major mite fec 100.0 1.4E-42 4.8E-47 421.9 3.2 227 2136-2413 45-305 (312)
24 2o6x_A Procathepsin L1, secret 100.0 1.3E-41 4.5E-46 415.0 10.6 222 2136-2408 52-304 (310)
25 3cbj_A Cathepsin B; cathepsin 100.0 1.9E-41 6.4E-46 407.8 7.7 200 2172-2415 5-262 (266)
26 3qsd_A Cathepsin B-like peptid 100.0 3.3E-41 1.1E-45 403.3 8.2 193 2173-2410 2-253 (254)
27 1m6d_A Cathepsin F, catsf; pap 100.0 2E-40 6.9E-45 385.9 9.2 188 2174-2410 1-213 (214)
28 8pch_A Cathepsin H; hydrolase, 100.0 7.3E-40 2.5E-44 384.2 10.5 190 2174-2411 1-219 (220)
29 3i06_A Cruzipain; autocatalyti 100.0 1E-39 3.4E-44 380.3 11.2 183 2174-2409 1-213 (215)
30 3p5u_A Actinidin; SAD, cystein 100.0 1.4E-39 4.9E-44 380.9 12.3 185 2174-2410 1-217 (220)
31 3ow8_A WD repeat-containing pr 100.0 4E-36 1.4E-40 377.9 44.3 289 356-653 26-320 (321)
32 3u8e_A Papain-like cysteine pr 100.0 6E-40 2E-44 384.2 8.6 185 2174-2408 1-217 (222)
33 3kwz_A Cathepsin K; enzyme inh 100.0 1.3E-39 4.4E-44 380.7 10.9 183 2174-2407 1-212 (215)
34 2xu3_A Cathepsin L1; hydrolase 100.0 5.3E-40 1.8E-44 384.5 7.4 186 2174-2408 1-218 (220)
35 3f5v_A DER P 1 allergen; aller 100.0 4.3E-40 1.5E-44 386.2 5.2 187 2172-2408 8-220 (222)
36 1s4v_A Cysteine endopeptidase; 100.0 3.2E-39 1.1E-43 379.0 12.0 184 2173-2408 1-217 (229)
37 3ovx_A Cathepsin S; hydrolase, 100.0 6.4E-40 2.2E-44 384.1 5.9 186 2174-2408 2-216 (218)
38 1ppo_A Protease omega; hydrola 100.0 5.1E-39 1.8E-43 374.2 12.9 181 2174-2408 1-213 (216)
39 2fo5_A Cysteine proteinase EP- 100.0 4.4E-39 1.5E-43 382.0 12.4 189 2173-2415 3-227 (262)
40 1yal_A Chymopapain; hydrolase, 100.0 4.4E-39 1.5E-43 375.3 12.0 181 2174-2408 1-213 (218)
41 1iwd_A Ervatamin B; cysteine p 100.0 5.7E-39 1.9E-43 373.1 12.7 181 2174-2408 1-212 (215)
42 1cqd_A Protein (protease II); 100.0 4.8E-39 1.7E-43 375.8 11.9 182 2173-2408 2-215 (221)
43 1got_B GT-beta; complex (GTP-b 100.0 1.3E-35 4.6E-40 376.6 44.5 290 353-651 46-340 (340)
44 1vyh_C Platelet-activating fac 100.0 4E-36 1.4E-40 391.7 40.3 288 355-652 101-409 (410)
45 2b1m_A SPE31; papain-like, sug 100.0 1.2E-38 4.1E-43 377.4 13.6 186 2173-2409 1-223 (246)
46 3ioq_A CMS1MS2; caricaceae, cy 100.0 9.8E-39 3.3E-43 371.4 12.4 177 2174-2407 1-208 (213)
47 3f75_A Toxopain-2, cathepsin L 100.0 5E-39 1.7E-43 378.5 9.7 186 2172-2408 5-222 (224)
48 1deu_A Procathepsin X; cystein 100.0 1.6E-39 5.3E-44 391.4 5.4 195 2170-2412 32-277 (277)
49 2cio_A Papain; hydrolase/inhib 100.0 2.6E-38 8.8E-43 367.2 13.6 177 2174-2408 1-209 (212)
50 1o0e_A Ervatamin C; plant cyst 100.0 2.9E-38 9.9E-43 365.2 13.1 177 2174-2408 1-205 (208)
51 1vyh_C Platelet-activating fac 100.0 2.2E-35 7.7E-40 384.6 41.5 289 1076-1428 102-410 (410)
52 2bdz_A Mexicain; cysteine prot 100.0 2.1E-38 7.1E-43 368.1 11.3 177 2174-2408 1-209 (214)
53 3bwk_A Cysteine protease falci 100.0 2.5E-38 8.4E-43 375.0 11.1 184 2171-2409 17-241 (243)
54 2oul_A Falcipain 2; cysteine p 100.0 2.8E-38 9.7E-43 374.0 11.4 184 2171-2409 15-239 (241)
55 2ynn_A Coatomer subunit beta'; 100.0 7E-35 2.4E-39 363.8 42.3 293 108-561 4-301 (304)
56 3iz6_a 40S ribosomal protein R 100.0 1.8E-35 6.1E-40 381.5 36.7 295 354-653 58-374 (380)
57 2pbi_B Guanine nucleotide-bind 100.0 1.4E-34 4.9E-39 369.2 43.9 291 353-651 55-354 (354)
58 3ow8_A WD repeat-containing pr 100.0 1.5E-34 5E-39 363.7 42.7 291 1074-1428 24-320 (321)
59 1got_B GT-beta; complex (GTP-b 100.0 3.7E-34 1.3E-38 363.3 45.4 294 1072-1426 45-340 (340)
60 3iz6_a 40S ribosomal protein R 100.0 3E-35 1E-39 379.5 35.3 315 99-562 48-375 (380)
61 1r5m_A SIR4-interacting protei 100.0 2.5E-34 8.5E-39 375.0 41.8 357 183-653 25-424 (425)
62 3frx_A Guanine nucleotide-bind 100.0 6.9E-34 2.4E-38 357.4 43.1 288 355-653 10-316 (319)
63 2ynn_A Coatomer subunit beta'; 100.0 1.2E-33 4.1E-38 352.6 43.1 294 1073-1430 4-303 (304)
64 4ery_A WD repeat-containing pr 100.0 3.7E-33 1.3E-37 349.2 45.9 294 353-653 14-311 (312)
65 2pbi_B Guanine nucleotide-bind 100.0 1.3E-33 4.4E-38 360.3 42.4 296 1073-1426 55-354 (354)
66 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.1E-33 3.7E-38 359.8 40.8 296 355-654 8-335 (345)
67 1r5m_A SIR4-interacting protei 100.0 1.6E-33 5.4E-38 367.4 43.0 325 1038-1429 43-425 (425)
68 4g56_B MGC81050 protein; prote 100.0 2.4E-34 8.2E-39 367.5 34.3 324 1046-1434 11-348 (357)
69 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-33 9.7E-38 355.9 43.8 307 1071-1437 4-343 (345)
70 4g56_B MGC81050 protein; prote 100.0 2.2E-34 7.5E-39 367.8 32.4 318 81-523 11-346 (357)
71 4gqb_B Methylosome protein 50; 100.0 9.6E-34 3.3E-38 359.3 37.8 291 1080-1431 28-333 (344)
72 4ery_A WD repeat-containing pr 100.0 7.7E-33 2.6E-37 346.4 45.4 295 1071-1428 12-311 (312)
73 2xzm_R RACK1; ribosome, transl 100.0 3E-33 1E-37 355.4 41.9 288 355-653 14-339 (343)
74 2pm9_A Protein WEB1, protein t 100.0 3.4E-35 1.2E-39 382.9 23.6 364 77-562 14-414 (416)
75 1erj_A Transcriptional repress 100.0 2.8E-33 9.5E-38 362.8 40.9 288 359-653 61-388 (393)
76 3frx_A Guanine nucleotide-bind 100.0 3.3E-33 1.1E-37 351.2 40.2 290 150-561 8-316 (319)
77 1gxr_A ESG1, transducin-like e 100.0 5.6E-33 1.9E-37 350.2 39.8 322 1040-1427 9-335 (337)
78 4gqb_B Methylosome protein 50; 100.0 2.1E-33 7.3E-38 356.1 34.9 284 359-654 27-331 (344)
79 2xzm_R RACK1; ribosome, transl 100.0 7.7E-33 2.6E-37 351.7 37.4 291 109-521 13-341 (343)
80 1gxr_A ESG1, transducin-like e 100.0 1.6E-32 5.4E-37 346.0 40.0 324 116-561 8-336 (337)
81 1erj_A Transcriptional repress 100.0 2.9E-32 1E-36 353.2 42.7 297 1037-1429 61-389 (393)
82 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3E-32 1E-36 359.4 43.1 321 107-562 108-442 (445)
83 2hes_X YDR267CP; beta-propelle 100.0 2.9E-32 1E-36 344.3 40.3 292 354-653 6-327 (330)
84 2j04_B YDR362CP, TAU91; beta p 100.0 4E-34 1.4E-38 380.9 23.8 358 116-653 132-516 (524)
85 3v7d_B Cell division control p 100.0 9.6E-32 3.3E-36 356.4 44.2 346 108-560 112-461 (464)
86 4aow_A Guanine nucleotide-bind 100.0 1.7E-31 5.7E-36 337.6 44.4 287 356-653 32-336 (340)
87 2hes_X YDR267CP; beta-propelle 100.0 9.8E-32 3.3E-36 339.5 42.1 300 1071-1429 3-328 (330)
88 2wbf_X Serine-repeat antigen p 100.0 4E-35 1.4E-39 354.2 10.2 190 2177-2414 10-262 (265)
89 4aow_A Guanine nucleotide-bind 100.0 1.1E-31 3.9E-36 339.1 41.6 311 132-562 7-337 (340)
90 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-33 7.8E-38 373.6 27.0 340 76-561 134-516 (524)
91 2pm9_A Protein WEB1, protein t 100.0 8E-34 2.7E-38 369.9 22.0 329 1041-1430 13-415 (416)
92 3gre_A Serine/threonine-protei 100.0 9.4E-33 3.2E-37 363.1 31.4 368 82-651 34-437 (437)
93 3vl1_A 26S proteasome regulato 100.0 1.3E-32 4.4E-37 359.4 32.1 344 79-520 60-419 (420)
94 3zwl_B Eukaryotic translation 100.0 9.9E-31 3.4E-35 333.9 43.8 287 355-653 25-345 (369)
95 3vl1_A 26S proteasome regulato 100.0 8.3E-32 2.8E-36 351.7 33.4 344 1042-1429 58-419 (420)
96 3dm0_A Maltose-binding peripla 100.0 7.7E-31 2.6E-35 366.1 42.2 287 356-653 376-692 (694)
97 1sq9_A Antiviral protein SKI8; 100.0 4E-31 1.4E-35 342.3 36.1 288 355-653 9-394 (397)
98 2ovr_B FBW7, F-BOX/WD repeat p 100.0 6.5E-30 2.2E-34 337.0 48.0 311 1042-1430 121-443 (445)
99 3zwl_B Eukaryotic translation 100.0 4.2E-30 1.4E-34 328.1 44.1 297 1073-1435 23-352 (369)
100 3v7d_B Cell division control p 100.0 6.2E-30 2.1E-34 339.0 46.4 320 68-516 114-459 (464)
101 1sq9_A Antiviral protein SKI8; 100.0 2.2E-30 7.6E-35 335.3 38.9 293 1074-1430 8-396 (397)
102 4a11_B DNA excision repair pro 100.0 3.7E-31 1.3E-35 343.2 31.3 350 96-612 22-405 (408)
103 3dm0_A Maltose-binding peripla 100.0 1.7E-30 5.7E-35 362.8 40.0 291 151-561 374-692 (694)
104 1k32_A Tricorn protease; prote 100.0 8.5E-29 2.9E-33 360.8 59.6 442 78-653 17-501 (1045)
105 3ei3_B DNA damage-binding prot 100.0 3.2E-30 1.1E-34 332.6 37.3 289 354-653 65-381 (383)
106 3ei3_B DNA damage-binding prot 100.0 3.3E-30 1.1E-34 332.5 37.0 299 1068-1429 59-382 (383)
107 3odt_A Protein DOA1; ubiquitin 100.0 1.7E-29 5.7E-34 314.9 42.0 296 1071-1436 7-303 (313)
108 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-30 1.2E-34 329.8 36.4 287 357-653 3-360 (372)
109 3i2n_A WD repeat-containing pr 100.0 3.5E-30 1.2E-34 327.6 34.5 292 356-653 12-352 (357)
110 4e54_B DNA damage-binding prot 100.0 4E-31 1.4E-35 347.5 26.1 304 108-562 110-430 (435)
111 1k8k_C P40, ARP2/3 complex 41 100.0 6.9E-30 2.4E-34 327.1 36.9 310 1078-1432 4-364 (372)
112 3k26_A Polycomb protein EED; W 100.0 3.7E-30 1.3E-34 328.4 32.3 292 356-653 12-365 (366)
113 3i2n_A WD repeat-containing pr 100.0 1.2E-29 3.9E-34 322.9 36.1 291 1077-1432 13-356 (357)
114 3k26_A Polycomb protein EED; W 100.0 1.1E-29 3.9E-34 323.9 35.9 308 16-435 11-365 (366)
115 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-29 1.2E-33 312.1 39.4 282 353-654 9-296 (313)
116 3dwl_C Actin-related protein 2 100.0 4.3E-31 1.5E-35 339.7 22.7 323 112-560 6-377 (377)
117 3ois_A Cysteine protease; alph 100.0 8.2E-33 2.8E-37 336.8 5.9 208 2138-2396 19-273 (291)
118 3gre_A Serine/threonine-protei 100.0 9.5E-30 3.3E-34 334.4 35.0 314 1047-1426 34-437 (437)
119 4e54_B DNA damage-binding prot 100.0 4.6E-30 1.6E-34 337.4 31.9 292 356-653 113-429 (435)
120 4h5i_A Guanine nucleotide-exch 100.0 3.7E-30 1.3E-34 329.7 29.7 288 362-656 14-345 (365)
121 3dwl_C Actin-related protein 2 100.0 7.4E-31 2.5E-35 337.5 23.1 289 357-652 6-377 (377)
122 4a11_B DNA excision repair pro 100.0 2.7E-29 9.2E-34 325.6 37.6 336 354-698 35-405 (408)
123 2pm7_B Protein transport prote 100.0 2.1E-29 7.3E-34 313.0 32.7 252 111-478 3-284 (297)
124 4aez_A CDC20, WD repeat-contai 100.0 4.3E-29 1.5E-33 324.4 36.0 287 153-562 85-380 (401)
125 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-31 1.8E-35 339.2 17.7 315 115-600 13-349 (588)
126 4gga_A P55CDC, cell division c 100.0 1E-28 3.5E-33 322.9 37.9 280 161-563 107-396 (420)
127 4aez_A CDC20, WD repeat-contai 100.0 6.6E-29 2.3E-33 322.7 35.8 281 359-653 88-379 (401)
128 2pm7_B Protein transport prote 100.0 8.6E-29 3E-33 307.5 34.3 253 356-611 3-284 (297)
129 1k32_A Tricorn protease; prote 100.0 2E-27 6.7E-32 346.4 54.2 511 25-698 16-637 (1045)
130 1yfq_A Cell cycle arrest prote 100.0 9.3E-29 3.2E-33 312.8 34.0 289 357-652 6-322 (342)
131 3dw8_B Serine/threonine-protei 100.0 1.2E-28 4.2E-33 324.4 35.5 285 360-652 26-444 (447)
132 4ggc_A P55CDC, cell division c 100.0 3.3E-28 1.1E-32 304.2 36.6 279 162-563 28-316 (318)
133 3bg1_A Protein SEC13 homolog; 100.0 3.3E-29 1.1E-33 314.2 27.3 252 70-435 8-292 (316)
134 2j04_A TAU60, YPL007P, hypothe 100.0 5.4E-30 1.8E-34 330.0 19.9 314 156-642 12-349 (588)
135 3f3f_A Nucleoporin SEH1; struc 100.0 2.2E-28 7.4E-33 308.7 34.2 310 111-562 5-337 (351)
136 4gga_A P55CDC, cell division c 100.0 2.1E-27 7.2E-32 310.5 44.2 299 1041-1407 106-415 (420)
137 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-28 5.7E-33 309.7 32.6 290 356-653 5-336 (351)
138 3mmy_A MRNA export factor; mRN 100.0 7E-28 2.4E-32 307.3 38.1 296 352-652 29-344 (368)
139 1p22_A F-BOX/WD-repeat protein 100.0 4.4E-28 1.5E-32 318.5 36.8 292 72-498 130-433 (435)
140 3bg1_A Protein SEC13 homolog; 100.0 7.2E-29 2.4E-33 311.2 27.5 252 356-611 7-292 (316)
141 4ggc_A P55CDC, cell division c 100.0 1.7E-27 5.9E-32 297.6 38.9 275 365-653 28-314 (318)
142 1yfq_A Cell cycle arrest prote 100.0 9.3E-28 3.2E-32 303.7 36.7 282 1077-1427 6-322 (342)
143 4h5i_A Guanine nucleotide-exch 100.0 3E-27 1E-31 302.7 41.6 309 920-1245 9-343 (365)
144 3dw8_B Serine/threonine-protei 100.0 4.7E-28 1.6E-32 318.8 35.1 330 74-519 27-445 (447)
145 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-27 5.5E-32 313.2 36.9 274 357-654 128-414 (435)
146 3mmy_A MRNA export factor; mRN 100.0 1.1E-27 3.8E-32 305.5 34.0 296 1068-1429 25-346 (368)
147 3jrp_A Fusion protein of prote 100.0 2E-27 6.8E-32 304.7 33.6 258 70-440 6-291 (379)
148 3jrp_A Fusion protein of prote 100.0 2E-26 6.8E-31 295.4 34.5 257 355-614 4-289 (379)
149 2aq5_A Coronin-1A; WD40 repeat 99.9 5.8E-27 2E-31 304.4 26.8 282 79-481 38-344 (402)
150 2aq5_A Coronin-1A; WD40 repeat 99.9 6E-27 2.1E-31 304.2 26.9 280 366-653 38-341 (402)
151 4gq1_A NUP37; propeller, trans 99.9 2.7E-26 9.3E-31 297.0 30.0 361 18-561 10-388 (393)
152 2xyi_A Probable histone-bindin 99.9 9.6E-26 3.3E-30 295.7 34.0 248 399-653 122-409 (430)
153 3bws_A Protein LP49; two-domai 99.9 9.1E-25 3.1E-29 286.4 41.7 304 134-561 94-431 (433)
154 3vu4_A KMHSV2; beta-propeller 99.9 3E-25 1E-29 283.1 34.1 279 354-653 11-335 (355)
155 3jro_A Fusion protein of prote 99.9 1.5E-26 5.3E-31 324.6 22.9 256 110-481 2-287 (753)
156 3jro_A Fusion protein of prote 99.9 3E-26 1E-30 321.7 25.3 256 70-438 4-287 (753)
157 1l0q_A Surface layer protein; 99.9 4.1E-24 1.4E-28 276.0 42.8 335 174-641 3-365 (391)
158 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.3E-24 4.3E-29 287.0 38.0 308 1041-1387 5-391 (450)
159 3bws_A Protein LP49; two-domai 99.9 4.1E-24 1.4E-28 280.1 41.8 319 1042-1429 62-432 (433)
160 1l0q_A Surface layer protein; 99.9 5.6E-24 1.9E-28 274.7 42.2 310 1053-1432 3-345 (391)
161 2vdu_B TRNA (guanine-N(7)-)-me 99.9 3.5E-24 1.2E-28 282.7 39.5 282 1083-1429 5-391 (450)
162 2xyi_A Probable histone-bindin 99.9 5E-25 1.7E-29 288.9 29.4 267 99-480 109-411 (430)
163 2w18_A PALB2, fancn, partner a 99.9 3.2E-24 1.1E-28 260.8 33.4 281 119-560 41-355 (356)
164 3vu4_A KMHSV2; beta-propeller 99.9 3.6E-24 1.2E-28 273.1 33.6 284 881-1205 15-338 (355)
165 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-25 1.2E-29 281.0 23.8 269 369-652 43-331 (343)
166 4gq1_A NUP37; propeller, trans 99.9 1.9E-24 6.5E-29 279.7 28.8 338 1037-1432 12-392 (393)
167 2cb5_A Protein (bleomycin hydr 99.9 1.2E-26 4.1E-31 288.8 6.2 96 2173-2311 47-168 (453)
168 3lrv_A PRE-mRNA-splicing facto 99.9 1.5E-24 5.3E-29 275.1 25.9 272 172-561 47-332 (343)
169 2w18_A PALB2, fancn, partner a 99.9 3.6E-23 1.2E-27 251.6 34.5 281 1042-1427 41-355 (356)
170 2e01_A Cysteine proteinase 1; 99.9 1.8E-25 6.2E-30 278.6 8.2 94 2173-2309 52-169 (457)
171 1nir_A Nitrite reductase; hemo 99.9 5E-22 1.7E-26 266.7 40.2 333 1047-1437 144-522 (543)
172 1nir_A Nitrite reductase; hemo 99.9 4.2E-22 1.5E-26 267.4 36.6 337 124-576 144-524 (543)
173 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.2E-22 1.8E-26 258.6 26.8 304 116-543 61-409 (415)
174 3pw3_A Aminopeptidase C; bleom 99.9 3.1E-24 1.1E-28 261.7 2.1 80 2191-2308 22-108 (383)
175 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-20 3.5E-25 246.3 33.0 300 1041-1411 63-410 (415)
176 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-20 9.2E-25 261.9 34.6 325 1040-1429 36-459 (741)
177 2ecf_A Dipeptidyl peptidase IV 99.9 3.9E-20 1.3E-24 260.3 32.1 353 77-521 38-460 (741)
178 1ri6_A Putative isomerase YBHE 99.8 4.4E-19 1.5E-23 223.7 33.7 276 376-653 7-307 (343)
179 2z3z_A Dipeptidyl aminopeptida 99.8 4.5E-19 1.5E-23 247.9 35.0 385 80-561 30-475 (706)
180 1xfd_A DIP, dipeptidyl aminope 99.8 1.3E-19 4.5E-24 254.1 23.4 341 78-550 19-428 (723)
181 3u4y_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 214.7 34.3 276 369-653 4-303 (331)
182 2z3z_A Dipeptidyl aminopeptida 99.8 2E-18 6.7E-23 241.5 34.4 318 1045-1431 30-437 (706)
183 3vgz_A Uncharacterized protein 99.8 1E-17 3.5E-22 212.4 36.5 272 361-645 39-335 (353)
184 1xfd_A DIP, dipeptidyl aminope 99.8 6.7E-19 2.3E-23 246.9 27.3 329 1041-1431 17-445 (723)
185 2ojh_A Uncharacterized protein 99.8 3.1E-18 1.1E-22 210.3 28.9 256 379-645 17-293 (297)
186 1ri6_A Putative isomerase YBHE 99.8 2E-17 6.9E-22 208.5 35.5 269 360-636 35-335 (343)
187 3vgz_A Uncharacterized protein 99.8 2.7E-17 9.4E-22 208.4 35.9 279 886-1237 41-336 (353)
188 3u4y_A Uncharacterized protein 99.8 2.3E-17 7.8E-22 207.4 34.5 277 1047-1390 4-307 (331)
189 1pby_B Quinohemoprotein amine 99.8 1.8E-17 6.2E-22 208.3 31.0 278 1095-1438 2-319 (337)
190 1pby_B Quinohemoprotein amine 99.8 1.9E-17 6.5E-22 208.1 29.3 298 1053-1398 2-321 (337)
191 3hfq_A Uncharacterized protein 99.8 9.3E-17 3.2E-21 203.6 33.8 271 382-653 14-316 (347)
192 2ojh_A Uncharacterized protein 99.8 2.7E-17 9.3E-22 201.9 27.6 255 94-470 19-294 (297)
193 3o4h_A Acylamino-acid-releasin 99.7 1.7E-17 5.8E-22 226.3 22.5 274 361-653 20-314 (582)
194 1z68_A Fibroblast activation p 99.7 4.8E-17 1.7E-21 227.9 24.1 324 122-561 20-442 (719)
195 3hfq_A Uncharacterized protein 99.7 2.8E-15 9.7E-20 189.9 36.4 289 1054-1392 4-324 (347)
196 1jmx_B Amine dehydrogenase; ox 99.7 9.4E-16 3.2E-20 193.8 31.3 262 368-653 5-324 (349)
197 3scy_A Hypothetical bacterial 99.7 5.6E-15 1.9E-19 188.4 38.3 300 1052-1407 13-360 (361)
198 3scy_A Hypothetical bacterial 99.7 2.1E-15 7.1E-20 192.3 34.3 265 361-632 48-360 (361)
199 1z68_A Fibroblast activation p 99.7 1.2E-16 4.2E-21 223.7 24.1 335 890-1249 20-447 (719)
200 3o4h_A Acylamino-acid-releasin 99.7 2.6E-16 8.8E-21 214.7 26.5 270 1082-1429 21-315 (582)
201 1jof_A Carboxy-CIS,CIS-muconat 99.7 3E-15 1E-19 191.3 34.6 275 376-653 4-340 (365)
202 1jmx_B Amine dehydrogenase; ox 99.7 1.1E-15 3.6E-20 193.3 30.1 296 1087-1437 4-333 (349)
203 2oit_A Nucleoporin 214KDA; NH2 99.7 1.5E-15 5.2E-20 198.2 29.3 246 363-610 37-331 (434)
204 3pe7_A Oligogalacturonate lyas 99.7 8.3E-16 2.8E-20 197.9 24.6 292 356-653 24-381 (388)
205 4a5s_A Dipeptidyl peptidase 4 99.7 8E-15 2.7E-19 205.6 35.5 370 31-528 23-457 (740)
206 4a5s_A Dipeptidyl peptidase 4 99.7 6.4E-15 2.2E-19 206.6 32.4 351 80-561 21-448 (740)
207 2oiz_A Aromatic amine dehydrog 99.7 2.3E-14 7.9E-19 182.5 32.8 301 1051-1411 14-360 (361)
208 3pe7_A Oligogalacturonate lyas 99.6 1.7E-14 5.7E-19 185.7 29.9 298 1066-1428 14-381 (388)
209 2oit_A Nucleoporin 214KDA; NH2 99.6 8.9E-15 3E-19 191.0 26.9 198 1041-1246 37-279 (434)
210 1jof_A Carboxy-CIS,CIS-muconat 99.6 1.3E-13 4.4E-18 176.2 31.3 275 1096-1430 4-342 (365)
211 3c5m_A Oligogalacturonate lyas 99.6 1.6E-14 5.5E-19 186.0 22.4 274 365-653 38-381 (396)
212 2oiz_A Aromatic amine dehydrog 99.6 3.7E-13 1.3E-17 171.3 29.7 280 324-636 30-360 (361)
213 3azo_A Aminopeptidase; POP fam 99.6 1.2E-13 4.1E-18 191.4 26.2 336 111-561 17-410 (662)
214 3azo_A Aminopeptidase; POP fam 99.6 1.6E-13 5.4E-18 190.2 26.9 290 357-653 18-366 (662)
215 3c5m_A Oligogalacturonate lyas 99.5 1.1E-13 3.6E-18 178.4 21.3 301 1066-1428 14-381 (396)
216 1qks_A Cytochrome CD1 nitrite 99.5 2.3E-11 7.8E-16 162.6 43.3 331 1050-1437 165-546 (567)
217 1q7f_A NHL, brain tumor CG1071 99.5 3.1E-12 1.1E-16 157.0 32.2 239 403-653 27-279 (286)
218 2dg1_A DRP35, lactonase; beta 99.5 2.5E-12 8.7E-17 161.6 28.9 272 364-645 7-301 (333)
219 1q7f_A NHL, brain tumor CG1071 99.5 7.1E-12 2.4E-16 153.8 32.0 241 360-614 27-282 (286)
220 1qks_A Cytochrome CD1 nitrite 99.5 6.9E-11 2.4E-15 158.0 43.9 330 897-1253 167-546 (567)
221 3fvz_A Peptidyl-glycine alpha- 99.5 3.1E-12 1.1E-16 160.7 29.1 241 405-653 23-321 (329)
222 3fvz_A Peptidyl-glycine alpha- 99.5 7.6E-12 2.6E-16 157.2 29.5 252 1124-1429 23-322 (329)
223 2gop_A Trilobed protease; beta 99.5 4.8E-12 1.6E-16 159.9 27.1 256 364-653 16-330 (347)
224 2gop_A Trilobed protease; beta 99.5 1.3E-11 4.4E-16 156.0 30.7 264 1084-1428 16-330 (347)
225 2z2n_A Virginiamycin B lyase; 99.4 5.7E-10 1.9E-14 137.2 38.8 278 359-653 11-294 (299)
226 2dg1_A DRP35, lactonase; beta 99.4 4.8E-11 1.6E-15 149.9 29.5 267 1083-1419 6-300 (333)
227 3dsm_A Uncharacterized protein 99.4 1.1E-10 3.7E-15 146.5 30.7 263 1102-1437 15-309 (328)
228 3e5z_A Putative gluconolactona 99.4 9.1E-11 3.1E-15 144.8 29.0 232 400-647 22-280 (296)
229 3e5z_A Putative gluconolactona 99.4 1.7E-10 5.7E-15 142.4 30.5 241 357-615 22-289 (296)
230 2z2n_A Virginiamycin B lyase; 99.3 1.8E-09 6.3E-14 132.6 39.1 281 1080-1430 12-296 (299)
231 2xdw_A Prolyl endopeptidase; a 99.3 1.6E-10 5.6E-15 161.1 32.8 280 1050-1389 81-416 (710)
232 3dsm_A Uncharacterized protein 99.3 4.3E-10 1.5E-14 141.1 32.1 283 322-631 14-319 (328)
233 2mad_H Methylamine dehydrogena 99.3 4.3E-09 1.5E-13 133.9 40.7 286 1048-1394 28-357 (373)
234 3no2_A Uncharacterized protein 99.3 2E-10 7E-15 139.9 27.2 212 416-642 4-231 (276)
235 2xdw_A Prolyl endopeptidase; a 99.3 1.9E-10 6.5E-15 160.4 30.5 244 404-654 123-414 (710)
236 1rwi_B Serine/threonine-protei 99.3 2.2E-10 7.5E-15 139.0 26.8 238 407-654 25-264 (270)
237 4a2l_A BT_4663, two-component 99.3 1.6E-07 5.6E-12 132.5 60.2 481 886-1431 88-616 (795)
238 2mad_H Methylamine dehydrogena 99.3 3E-09 1E-13 135.4 36.7 285 1091-1436 29-357 (373)
239 2bkl_A Prolyl endopeptidase; m 99.3 7.1E-11 2.4E-15 164.3 23.6 278 1049-1390 76-400 (695)
240 4a2l_A BT_4663, two-component 99.3 3.4E-07 1.2E-11 129.2 60.6 525 23-649 86-655 (795)
241 3sjl_D Methylamine dehydrogena 99.3 1E-09 3.5E-14 137.6 30.6 303 1047-1409 39-384 (386)
242 2bkl_A Prolyl endopeptidase; m 99.3 4.9E-11 1.7E-15 165.9 19.9 246 359-615 117-400 (695)
243 1rwi_B Serine/threonine-protei 99.2 2.4E-10 8.3E-15 138.6 23.3 243 1126-1434 25-269 (270)
244 2qc5_A Streptogramin B lactona 99.2 1E-08 3.5E-13 126.0 37.2 276 361-652 18-298 (300)
245 3no2_A Uncharacterized protein 99.2 1.1E-09 3.8E-14 133.5 27.9 197 1050-1252 3-202 (276)
246 2qc5_A Streptogramin B lactona 99.2 2.3E-08 7.9E-13 122.8 36.6 278 1081-1428 18-299 (300)
247 3sjl_D Methylamine dehydrogena 99.2 3E-09 1E-13 133.4 28.3 282 1130-1437 38-371 (386)
248 3c75_H MADH, methylamine dehyd 99.2 5.1E-09 1.8E-13 133.8 30.5 286 1050-1394 82-409 (426)
249 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 5.1E-09 1.7E-13 129.9 27.6 240 404-653 16-298 (314)
250 3c75_H MADH, methylamine dehyd 99.1 6.7E-09 2.3E-13 132.7 29.0 285 1092-1436 82-409 (426)
251 1yr2_A Prolyl oligopeptidase; 99.1 2.5E-09 8.5E-14 149.8 27.4 273 372-654 116-441 (741)
252 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.2E-08 4.2E-13 126.5 30.4 239 362-612 17-299 (314)
253 3v9f_A Two-component system se 99.1 4.3E-06 1.5E-10 117.7 59.8 491 886-1431 66-613 (781)
254 3v9f_A Two-component system se 99.1 4.7E-06 1.6E-10 117.3 56.4 489 885-1431 18-570 (781)
255 3hrp_A Uncharacterized protein 99.1 2.3E-08 7.9E-13 129.1 29.3 238 406-652 131-408 (409)
256 1xip_A Nucleoporin NUP159; bet 99.0 2.1E-09 7.3E-14 135.4 18.4 170 887-1099 39-230 (388)
257 3q7m_A Lipoprotein YFGL, BAMB; 99.0 6.7E-08 2.3E-12 123.5 32.7 305 1051-1426 52-375 (376)
258 1xip_A Nucleoporin NUP159; bet 99.0 1.6E-09 5.3E-14 136.6 16.7 171 364-548 39-230 (388)
259 3q7m_A Lipoprotein YFGL, BAMB; 99.0 1.5E-07 5.2E-12 120.2 35.4 305 896-1243 53-376 (376)
260 1yr2_A Prolyl oligopeptidase; 99.0 7.4E-09 2.5E-13 145.0 25.0 246 359-615 159-444 (741)
261 2qe8_A Uncharacterized protein 99.0 4.1E-09 1.4E-13 133.0 20.2 271 1083-1426 17-318 (343)
262 3hrp_A Uncharacterized protein 99.0 6.7E-08 2.3E-12 124.7 31.7 237 363-610 131-408 (409)
263 1kb0_A Quinohemoprotein alcoho 99.0 2.2E-08 7.5E-13 137.6 28.5 317 896-1232 77-537 (677)
264 3g4e_A Regucalcin; six bladed 99.0 9.7E-08 3.3E-12 117.7 31.5 232 403-644 10-262 (297)
265 3g4e_A Regucalcin; six bladed 99.0 2.7E-07 9.3E-12 113.7 34.9 230 970-1234 15-261 (297)
266 1yiq_A Quinohemoprotein alcoho 99.0 3.6E-08 1.2E-12 135.7 28.7 339 1052-1414 70-533 (689)
267 1kb0_A Quinohemoprotein alcoho 99.0 7.1E-08 2.4E-12 132.5 31.0 337 1052-1415 77-536 (677)
268 3dr2_A Exported gluconolactona 99.0 4.8E-08 1.6E-12 121.0 26.5 232 402-648 41-301 (305)
269 1yiq_A Quinohemoprotein alcoho 99.0 4.3E-08 1.5E-12 134.9 28.2 319 896-1231 70-534 (689)
270 2qe8_A Uncharacterized protein 99.0 1.4E-08 4.8E-13 128.1 20.9 267 363-650 17-317 (343)
271 1mda_H Methylamine dehydrogena 98.9 3.3E-08 1.1E-12 124.4 21.4 290 1051-1408 30-366 (368)
272 3dr2_A Exported gluconolactona 98.9 2E-07 6.9E-12 115.3 27.0 230 358-605 40-300 (305)
273 2ghs_A AGR_C_1268P; regucalcin 98.9 9.3E-07 3.2E-11 110.5 32.2 226 407-645 50-293 (326)
274 2ghs_A AGR_C_1268P; regucalcin 98.8 9.5E-07 3.3E-11 110.4 32.2 222 364-601 50-291 (326)
275 3iuj_A Prolyl endopeptidase; h 98.8 6.2E-08 2.1E-12 134.4 22.6 243 359-615 125-408 (693)
276 1mda_H Methylamine dehydrogena 98.8 1.2E-07 4.2E-12 119.2 22.6 257 1147-1438 47-355 (368)
277 3hxj_A Pyrrolo-quinoline quino 98.8 3.4E-08 1.2E-12 123.4 16.9 301 1047-1431 26-326 (330)
278 3hxj_A Pyrrolo-quinoline quino 98.8 1E-07 3.6E-12 118.9 20.4 300 891-1246 25-325 (330)
279 3iuj_A Prolyl endopeptidase; h 98.8 2.5E-07 8.6E-12 128.2 25.6 239 403-653 126-404 (693)
280 2ece_A 462AA long hypothetical 98.7 2.9E-06 9.9E-11 106.7 28.1 224 415-642 93-399 (462)
281 1npe_A Nidogen, entactin; glyc 98.6 1.4E-05 4.7E-10 96.6 32.4 249 375-635 2-262 (267)
282 1fwx_A Nitrous oxide reductase 98.6 4.3E-07 1.5E-11 118.0 18.4 311 991-1376 17-407 (595)
283 1kv9_A Type II quinohemoprotei 98.6 2.2E-06 7.7E-11 117.5 26.4 301 896-1213 66-498 (668)
284 2hz6_A Endoplasmic reticulum t 98.6 4.8E-08 1.6E-12 124.4 8.9 187 416-620 8-200 (369)
285 2ad6_A Methanol dehydrogenase 98.6 6.5E-06 2.2E-10 110.6 29.4 314 896-1231 62-523 (571)
286 1w6s_A Methanol dehydrogenase 98.6 7.9E-06 2.7E-10 109.5 29.6 315 896-1230 62-531 (599)
287 3ei3_A DNA damage-binding prot 98.6 0.02 6.8E-07 82.4 92.8 464 899-1429 485-999 (1158)
288 1kv9_A Type II quinohemoprotei 98.5 6.9E-06 2.4E-10 112.7 28.5 290 1094-1439 66-498 (668)
289 2hz6_A Endoplasmic reticulum t 98.5 2.8E-08 9.4E-13 126.6 3.5 190 1051-1255 8-202 (369)
290 2ece_A 462AA long hypothetical 98.5 1.6E-05 5.5E-10 100.0 27.4 227 372-600 93-399 (462)
291 3s94_A LRP-6, low-density lipo 98.5 0.02 6.8E-07 77.3 60.7 466 18-561 34-509 (619)
292 1flg_A Protein (quinoprotein e 98.5 2.3E-05 7.8E-10 105.4 29.4 319 896-1231 68-545 (582)
293 3s94_A LRP-6, low-density lipo 98.4 0.022 7.4E-07 76.9 64.2 229 382-619 16-250 (619)
294 1fwx_A Nitrous oxide reductase 98.4 3.1E-06 1.1E-10 110.0 18.9 249 895-1157 99-433 (595)
295 2ad6_A Methanol dehydrogenase 98.4 0.00011 3.9E-09 98.5 34.3 331 1052-1414 62-522 (571)
296 1w6s_A Methanol dehydrogenase 98.3 3.9E-05 1.3E-09 102.8 27.8 292 1094-1439 62-513 (599)
297 4a0p_A LRP6, LRP-6, low-densit 98.3 0.036 1.2E-06 74.9 65.2 479 899-1434 8-554 (628)
298 3ei3_A DNA damage-binding prot 98.3 0.063 2.2E-06 77.2 87.1 485 885-1434 326-918 (1158)
299 1npe_A Nidogen, entactin; glyc 98.3 0.00039 1.3E-08 83.7 33.4 250 898-1185 2-263 (267)
300 1flg_A Protein (quinoprotein e 98.3 0.00019 6.3E-09 96.5 32.7 343 1052-1414 68-544 (582)
301 4a0p_A LRP6, LRP-6, low-densit 98.3 0.049 1.7E-06 73.5 69.9 229 382-621 13-246 (628)
302 2iwa_A Glutamine cyclotransfer 98.3 2.6E-05 8.9E-10 92.8 20.6 198 407-613 22-238 (266)
303 3ott_A Two-component system se 98.3 0.037 1.3E-06 77.2 56.2 482 885-1430 21-546 (758)
304 3nol_A Glutamine cyclotransfer 98.3 4.9E-05 1.7E-09 89.2 22.0 183 451-643 46-244 (262)
305 2fp8_A Strictosidine synthase; 98.2 0.00015 5E-09 90.2 27.3 239 365-611 21-312 (322)
306 2iwa_A Glutamine cyclotransfer 98.2 0.00021 7.1E-09 85.0 26.8 193 364-562 22-237 (266)
307 3nol_A Glutamine cyclotransfer 98.2 0.00011 3.9E-09 86.1 23.0 184 1043-1234 45-244 (262)
308 2fp8_A Strictosidine synthase; 98.1 0.00045 1.5E-08 85.8 26.7 236 406-653 19-312 (322)
309 3mbr_X Glutamine cyclotransfer 98.0 0.00038 1.3E-08 81.1 23.6 183 450-642 23-222 (243)
310 3nok_A Glutaminyl cyclase; bet 98.0 0.00017 5.7E-09 84.6 20.1 179 451-642 58-253 (268)
311 1k3i_A Galactose oxidase precu 98.0 9E-05 3.1E-09 101.8 21.1 271 367-643 190-530 (656)
312 3nok_A Glutaminyl cyclase; bet 98.0 0.00015 5E-09 85.1 18.8 184 407-600 56-254 (268)
313 2p4o_A Hypothetical protein; p 98.0 0.003 1E-07 77.7 31.4 229 406-645 32-279 (306)
314 3mbr_X Glutamine cyclotransfer 97.9 0.0013 4.5E-08 76.6 25.5 184 1041-1233 21-222 (243)
315 3v64_C Agrin; beta propeller, 97.9 0.01 3.4E-07 74.4 35.1 245 886-1162 34-282 (349)
316 3v65_B Low-density lipoprotein 97.9 0.0043 1.5E-07 79.0 31.7 252 367-631 81-337 (386)
317 3v65_B Low-density lipoprotein 97.9 0.0075 2.6E-07 76.7 33.8 244 887-1162 78-325 (386)
318 3v64_C Agrin; beta propeller, 97.9 0.0064 2.2E-07 76.2 32.3 253 365-630 36-293 (349)
319 1k3i_A Galactose oxidase precu 97.8 0.00031 1.1E-08 96.4 20.5 274 927-1234 187-530 (656)
320 2p4o_A Hypothetical protein; p 97.8 0.0071 2.4E-07 74.3 30.5 239 1073-1378 23-279 (306)
321 3ott_A Two-component system se 97.8 0.41 1.4E-05 66.6 60.1 488 886-1431 63-588 (758)
322 1ijq_A LDL receptor, low-densi 97.7 0.029 9.8E-07 69.2 34.9 228 383-620 9-246 (316)
323 1ijq_A LDL receptor, low-densi 97.7 0.028 9.7E-07 69.3 34.7 231 899-1161 3-244 (316)
324 3tc9_A Hypothetical hydrolase; 97.7 0.0023 7.9E-08 82.7 25.5 243 406-652 137-428 (430)
325 2xbg_A YCF48-like protein; pho 97.7 0.022 7.4E-07 70.7 32.8 273 363-652 36-320 (327)
326 3qqz_A Putative uncharacterize 97.7 0.017 5.9E-07 68.1 29.3 167 1077-1244 21-203 (255)
327 3h0g_A DNA-directed RNA polyme 97.6 7.1E-06 2.4E-10 118.0 0.0 33 1625-1657 1330-1363(1752)
328 4hw6_A Hypothetical protein, I 97.6 0.0051 1.8E-07 79.4 26.2 243 406-652 139-431 (433)
329 3p5b_L Low density lipoprotein 97.6 0.036 1.2E-06 70.7 33.9 239 383-630 91-338 (400)
330 3h0g_A DNA-directed RNA polyme 97.6 9E-06 3.1E-10 117.0 0.0 28 1711-1738 1309-1338(1752)
331 3p5b_L Low density lipoprotein 97.6 0.13 4.4E-06 65.6 38.1 251 898-1222 84-339 (400)
332 2xbg_A YCF48-like protein; pho 97.5 0.071 2.4E-06 66.0 34.1 271 885-1201 35-320 (327)
333 3qqz_A Putative uncharacterize 97.5 0.01 3.4E-07 70.2 24.5 206 442-651 21-250 (255)
334 3tc9_A Hypothetical hydrolase; 97.5 0.013 4.6E-07 75.5 27.7 236 366-611 140-429 (430)
335 3sov_A LRP-6, low-density lipo 97.5 0.021 7.2E-07 70.4 28.2 230 383-621 12-247 (318)
336 4hw6_A Hypothetical protein, I 97.4 0.026 8.9E-07 72.8 29.1 236 366-611 142-432 (433)
337 3kya_A Putative phosphatase; s 97.4 0.013 4.3E-07 75.8 24.9 242 407-653 140-474 (496)
338 2xe4_A Oligopeptidase B; hydro 97.4 0.0024 8.3E-08 88.8 19.6 197 491-697 175-397 (751)
339 3m0c_C LDL receptor, low-densi 97.3 0.087 3E-06 72.7 33.3 231 382-621 402-641 (791)
340 3sov_A LRP-6, low-density lipo 97.2 0.11 3.8E-06 63.9 30.7 233 899-1162 6-245 (318)
341 3kya_A Putative phosphatase; s 97.2 0.06 2.1E-06 69.5 28.6 247 364-617 140-480 (496)
342 3amr_A 3-phytase; beta-propell 97.2 0.029 1E-06 68.5 23.8 198 416-620 39-272 (355)
343 2xe4_A Oligopeptidase B; hydro 97.1 0.0096 3.3E-07 82.8 21.5 188 28-231 177-395 (751)
344 3amr_A 3-phytase; beta-propell 97.1 0.065 2.2E-06 65.5 25.7 199 1051-1254 39-273 (355)
345 2p9w_A MAL S 1 allergenic prot 97.1 0.069 2.3E-06 64.7 25.6 203 1043-1247 15-267 (334)
346 2xzh_A Clathrin heavy chain 1; 97.1 0.42 1.4E-05 57.2 31.1 253 383-646 48-324 (365)
347 3m0c_C LDL receptor, low-densi 97.0 0.21 7.2E-06 68.9 32.7 241 889-1162 388-639 (791)
348 2xzh_A Clathrin heavy chain 1; 96.9 0.81 2.8E-05 54.8 31.4 263 1104-1390 49-335 (365)
349 2p9w_A MAL S 1 allergenic prot 96.8 0.087 3E-06 63.9 23.0 204 444-653 9-264 (334)
350 2ism_A Putative oxidoreductase 96.8 0.26 8.9E-06 61.5 28.6 227 364-599 32-332 (352)
351 1bpo_A Protein (clathrin); cla 96.7 1.4 4.8E-05 54.7 32.3 259 383-652 47-329 (494)
352 1n7d_A LDL receptor, low-densi 96.6 0.0065 2.2E-07 83.4 12.9 240 382-630 384-632 (699)
353 1bpo_A Protein (clathrin); cla 96.6 1.8 6.2E-05 53.8 32.1 240 1103-1366 47-310 (494)
354 3a9g_A Putative uncharacterize 96.5 0.75 2.6E-05 57.3 30.1 228 364-600 30-330 (354)
355 2ism_A Putative oxidoreductase 96.4 0.35 1.2E-05 60.4 25.7 235 886-1143 31-333 (352)
356 1n7d_A LDL receptor, low-densi 95.9 0.012 4.1E-07 80.7 9.4 231 900-1161 380-620 (699)
357 3a9g_A Putative uncharacterize 95.8 2.2 7.5E-05 53.1 28.7 105 1125-1233 29-153 (354)
358 3sre_A PON1, serum paraoxonase 95.4 4.4 0.00015 50.1 28.9 192 366-561 53-297 (355)
359 3das_A Putative oxidoreductase 95.2 4.4 0.00015 49.8 27.7 115 1120-1235 27-160 (347)
360 2g8s_A Glucose/sorbosone dehyd 95.1 0.82 2.8E-05 57.0 21.4 235 406-647 18-347 (353)
361 2be1_A Serine/threonine-protei 95.1 0.35 1.2E-05 59.4 17.4 196 418-617 11-236 (339)
362 3das_A Putative oxidoreductase 95.1 7.5 0.00026 47.8 29.4 232 362-599 31-325 (347)
363 2vpj_A Kelch-like protein 12; 95.0 1.3 4.3E-05 53.6 22.4 212 427-653 31-277 (301)
364 3sre_A PON1, serum paraoxonase 94.9 1.1 3.8E-05 55.4 21.4 157 491-653 51-251 (355)
365 2g8s_A Glucose/sorbosone dehyd 94.9 3.8 0.00013 50.8 26.8 233 364-605 19-347 (353)
366 2vpj_A Kelch-like protein 12; 94.5 2.5 8.7E-05 50.9 23.3 213 906-1156 31-279 (301)
367 2xn4_A Kelch-like protein 2; s 94.4 1.6 5.6E-05 52.7 21.3 102 1325-1430 155-277 (302)
368 2xn4_A Kelch-like protein 2; s 94.3 2.5 8.4E-05 51.1 22.6 212 427-653 30-275 (302)
369 1twf_A B220, DNA-directed RNA 94.1 0.0088 3E-07 86.8 0.0 47 1625-1672 1324-1377(1733)
370 3ii7_A Kelch-like protein 7; p 93.6 3.5 0.00012 49.8 22.3 220 419-653 14-271 (306)
371 3ii7_A Kelch-like protein 7; p 93.4 4 0.00014 49.3 22.3 212 906-1156 24-273 (306)
372 1cru_A Protein (soluble quinop 93.4 15 0.0005 47.3 28.3 155 406-561 27-258 (454)
373 3pbp_A Nucleoporin NUP82; beta 93.3 2.2 7.5E-05 53.1 18.9 158 891-1067 26-208 (452)
374 4asc_A Kelch repeat and BTB do 93.2 4.1 0.00014 49.4 21.9 179 377-562 8-221 (315)
375 3pbp_A Nucleoporin NUP82; beta 93.1 2 7E-05 53.4 18.2 104 491-598 67-196 (452)
376 2be1_A Serine/threonine-protei 93.0 1.1 3.8E-05 54.9 16.0 189 1095-1287 11-236 (339)
377 4asc_A Kelch repeat and BTB do 92.2 3 0.0001 50.8 18.7 202 427-644 13-253 (315)
378 3sbq_A Nitrous-oxide reductase 92.2 24 0.00081 45.4 26.2 90 1055-1144 73-196 (638)
379 1zgk_A Kelch-like ECH-associat 92.0 4.6 0.00016 48.8 20.1 203 428-645 40-273 (308)
380 3s25_A Hypothetical 7-bladed b 91.9 27 0.00091 42.1 26.5 208 372-611 23-254 (302)
381 1cru_A Protein (soluble quinop 91.7 38 0.0013 43.3 33.5 108 1084-1191 28-162 (454)
382 1zgk_A Kelch-like ECH-associat 91.2 4.5 0.00015 49.0 18.6 223 896-1156 24-288 (308)
383 1tl2_A L10, protein (tachylect 90.9 4 0.00014 46.3 15.8 148 490-649 41-205 (236)
384 1xi4_A Clathrin heavy chain; a 90.8 5.1 0.00018 57.0 20.0 239 383-632 47-309 (1630)
385 2woz_A Kelch repeat and BTB do 90.8 6.9 0.00024 47.5 19.9 172 386-562 26-231 (318)
386 2woz_A Kelch repeat and BTB do 90.3 12 0.00043 45.2 21.6 202 428-644 25-263 (318)
387 1xi4_A Clathrin heavy chain; a 90.1 6.9 0.00024 55.8 20.3 235 1103-1361 47-305 (1630)
388 2uvk_A YJHT; unknown function, 88.8 6.1 0.00021 48.9 17.4 219 416-645 19-327 (357)
389 2uvk_A YJHT; unknown function, 88.5 5.2 0.00018 49.5 16.5 62 896-958 19-97 (357)
390 3s25_A Hypothetical 7-bladed b 87.4 20 0.0007 43.1 20.2 158 470-653 88-254 (302)
391 3b7f_A Glycosyl hydrolase, BNR 84.8 87 0.003 38.9 26.2 175 375-553 23-254 (394)
392 2zwa_A Leucine carboxyl methyl 84.7 12 0.00041 51.0 18.0 201 415-616 396-639 (695)
393 2wg3_C Hedgehog-interacting pr 83.9 1.1E+02 0.0036 39.2 29.2 52 927-978 15-79 (463)
394 1tl2_A L10, protein (tachylect 83.5 42 0.0014 38.2 18.2 145 406-561 41-207 (236)
395 2wg3_C Hedgehog-interacting pr 80.7 1.4E+02 0.0047 38.2 27.2 233 365-600 16-354 (463)
396 3uc1_A DNA gyrase subunit A; D 79.3 84 0.0029 38.1 20.9 234 375-611 4-278 (327)
397 3b7f_A Glycosyl hydrolase, BNR 78.3 1.4E+02 0.0048 37.0 24.1 261 363-632 55-391 (394)
398 3sbq_A Nitrous-oxide reductase 76.4 7.3 0.00025 50.0 10.1 83 887-969 324-431 (638)
399 2zwa_A Leucine carboxyl methyl 75.1 36 0.0012 46.2 17.7 189 372-562 396-635 (695)
400 1suu_A DNA gyrase subunit A; t 74.7 1.5E+02 0.0052 35.6 28.2 108 500-611 113-230 (312)
401 1zi0_A DNA gyrase subunit A; b 73.1 1.6E+02 0.0056 35.2 25.0 149 500-652 108-275 (307)
402 3no0_A DNA gyrase subunit A; D 69.5 1.1E+02 0.0036 36.3 17.8 145 461-611 81-245 (276)
403 3uc1_A DNA gyrase subunit A; D 68.0 2.1E+02 0.0073 34.5 20.6 188 372-562 51-279 (327)
404 3qhy_B Beta-lactamase inhibito 65.3 2E+02 0.007 33.8 19.4 220 406-653 24-245 (282)
405 3qhy_B Beta-lactamase inhibito 64.0 1.6E+02 0.0055 34.7 18.1 166 1061-1245 80-246 (282)
406 3q6k_A 43.2 kDa salivary prote 59.9 3.2E+02 0.011 33.7 23.4 182 904-1142 121-341 (381)
407 1wp5_A Topoisomerase IV; broke 57.9 3.1E+02 0.011 33.0 22.9 161 488-652 90-275 (323)
408 3l6v_A GYRA, DNA gyrase subuni 56.9 3.5E+02 0.012 33.2 26.9 148 500-651 112-313 (370)
409 4hvt_A Ritya.17583.B, post-pro 53.2 5.6E+02 0.019 34.5 23.6 238 409-653 132-429 (711)
410 1pxv_A Cysteine protease; hydr 52.8 19 0.00065 38.6 6.1 36 2354-2395 127-162 (183)
411 3q6k_A 43.2 kDa salivary prote 50.7 4.4E+02 0.015 32.5 22.5 181 1195-1417 124-342 (381)
412 3no0_A DNA gyrase subunit A; D 50.1 3.7E+02 0.013 31.5 21.1 200 887-1112 25-245 (276)
413 1cv8_A Staphopain; cysteine pr 47.5 20 0.00068 38.4 5.3 36 2354-2394 117-152 (174)
414 1x9y_A Cysteine proteinase; ha 45.1 23 0.0008 42.0 5.8 36 2354-2395 303-338 (367)
415 4gq2_M Nucleoporin NUP120; bet 36.4 2.4E+02 0.0081 39.6 15.3 155 1265-1427 128-315 (950)
416 4hvt_A Ritya.17583.B, post-pro 35.7 9.5E+02 0.033 32.2 22.5 95 1102-1202 318-429 (711)
417 1suu_A DNA gyrase subunit A; t 29.9 7.6E+02 0.026 29.3 27.1 198 989-1203 8-231 (312)
418 3kci_A Probable E3 ubiquitin-p 22.8 1.1E+03 0.037 28.7 30.2 241 1174-1429 54-345 (389)
419 3kci_A Probable E3 ubiquitin-p 22.7 1.1E+03 0.037 28.7 28.5 156 1042-1203 160-345 (389)
420 1zi0_A DNA gyrase subunit A; b 21.7 1E+03 0.035 28.0 27.8 148 1093-1243 2-174 (307)
421 1sqj_A OXG-RCBH, oligoxylogluc 21.3 1.6E+03 0.056 30.2 22.2 198 362-559 14-266 (789)
422 3zwu_A Alkaline phosphatase PH 20.0 2.1E+02 0.0071 37.6 9.2 59 491-549 477-548 (592)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.2e-58 Score=633.04 Aligned_cols=568 Identities=32% Similarity=0.520 Sum_probs=491.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...|+||.+.|++++|+|||++||+|+.|+.|+|||..+ +.+..+.+|.+.|.+++|+||+++|++++.|+.|++||+
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~--~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~ 86 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 86 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCC--CEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 356899999999999999999999999999999999654 456778999999999999999999999999999999996
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+++.+..+.+|...|.+++|+|++ .++++++.|+.+++|+...........+...+.++.++|+++.++.++.++.++
T Consensus 87 -~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (577)
T 2ymu_A 87 -NGQLLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred -CCCEEEEEECCCCCEEEEEECCCC-CEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceeccccccee
Confidence 688999999999999999999987 567899999999999988776666667888999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+|+.. .........|...|.++.|+|++++|++++.|+.|++||.. .+.+..+.+|. ..+.+++|+|+|+
T Consensus 165 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-----~~~~~~~~~~~----~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 165 LWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVRGVAFSPDGQ 234 (577)
T ss_dssp EECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEEEECCS----SCEEEEEECTTSS
T ss_pred ccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-----CcEEEEEecCC----CCEEEEEECCCCC
Confidence 99964 45666778899999999999999999999999999999964 46777787775 4789999999999
Q ss_pred EEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEe
Q psy4869 595 YVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMV 674 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~ 674 (2435)
+|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++|+.+. .
T Consensus 235 ~l~~~~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~------~------------- 294 (577)
T 2ymu_A 235 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG------Q------------- 294 (577)
T ss_dssp CEEEEETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS------C-------------
T ss_pred EEEEEeCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC------c-------------
Confidence 9999999999999995 5788889999999999999999999999999999999998530 0
Q ss_pred cCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeee
Q psy4869 675 NDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCH 754 (2435)
Q Consensus 675 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 754 (2435)
.
T Consensus 295 --------------------------------------------------------------~----------------- 295 (577)
T 2ymu_A 295 --------------------------------------------------------------L----------------- 295 (577)
T ss_dssp --------------------------------------------------------------E-----------------
T ss_pred --------------------------------------------------------------E-----------------
Confidence 0
Q ss_pred cCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccc
Q psy4869 755 GNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGK 834 (2435)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (2435)
+
T Consensus 296 ----~--------------------------------------------------------------------------- 296 (577)
T 2ymu_A 296 ----L--------------------------------------------------------------------------- 296 (577)
T ss_dssp ----E---------------------------------------------------------------------------
T ss_pred ----E---------------------------------------------------------------------------
Confidence 0
Q ss_pred eeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeC
Q psy4869 835 IKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNR 913 (2435)
Q Consensus 835 ~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~ 913 (2435)
..+.||...|.+++|+|++++|+++. ++.|++||.
T Consensus 297 --------------------------------------------~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~ 332 (577)
T 2ymu_A 297 --------------------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 332 (577)
T ss_dssp --------------------------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred --------------------------------------------EEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 00235777899999999999999886 589999998
Q ss_pred CCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEE
Q psy4869 914 PSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVV 993 (2435)
Q Consensus 914 ~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~ 993 (2435)
...+......+...+.+++|+|++++|++|..||.|.+||. +++++..+.+|.
T Consensus 333 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~-------------------------- 385 (577)
T 2ymu_A 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-------------------------- 385 (577)
T ss_dssp TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS--------------------------
T ss_pred CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC--------------------------
Confidence 76544433336778889999999999999999999999884 344444333333
Q ss_pred EEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe
Q psy4869 994 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK 1073 (2435)
Q Consensus 994 sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~ 1073 (2435)
..|.+++|+|||++|++++.|+.|++|+. +++
T Consensus 386 -----------------------------------------------~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 386 -----------------------------------------------SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp -----------------------------------------------SCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred -----------------------------------------------CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 34556666677777777777777777774 446
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1153 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~ 1153 (2435)
.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus 418 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~ 496 (577)
T 2ymu_A 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 496 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence 66778889999999999999999999999999999996 57788899999999999999999999999999999999995
Q ss_pred CCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1154 DNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1154 ~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+++.+.. +.+|...|++++|+|++++|++++.||.|++||. +++++..+.+|.+.|.+++|+||+++|++++
T Consensus 497 -~~~~~~~------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 497 -NGQLLQT------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp -TSCEEEE------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -CCCEEEE------EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 4444443 3589999999999999999999999999999996 5788899999999999999999999999999
Q ss_pred CCCcEEEEE
Q psy4869 1234 KDGRVKQWD 1242 (2435)
Q Consensus 1234 ~Dg~I~vwD 1242 (2435)
.|+.|++||
T Consensus 569 ~D~~i~~Wd 577 (577)
T 2ymu_A 569 SDKTVKLWN 577 (577)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEeC
Confidence 999999997
No 2
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-58 Score=629.89 Aligned_cols=570 Identities=32% Similarity=0.486 Sum_probs=495.5
Q ss_pred cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 522 SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 522 ~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
+..+.|++|.+.|++|+|+|||++||+++.|++|+|||.. .+++..+.+|. ..|.+++|+|||++|++++.
T Consensus 7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-----~~~~~~l~gh~----~~V~~l~fspdg~~las~~~ 77 (577)
T 2ymu_A 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-----GQLLQTLTGHS----SSVWGVAFSPDGQTIASASD 77 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-----SCEEEEEECCS----SCEEEEEECTTSSEEEEEET
T ss_pred EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-----CCEEEEEeCCC----CCEEEEEECCCCCEEEEEeC
Confidence 3456789999999999999999999999999999999953 57888899886 47999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeE
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQI 681 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (2435)
|+.|+|||. +++++..+.+|.+.|.+++|+|++++|++++.|+.+++|+.....
T Consensus 78 d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~------------------------- 131 (577)
T 2ymu_A 78 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL------------------------- 131 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE-------------------------
T ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce-------------------------
Confidence 999999995 678899999999999999999999999999999999999863000
Q ss_pred EEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEE
Q psy4869 682 LCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVD 761 (2435)
Q Consensus 682 l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (2435)
.
T Consensus 132 -----------------------------------------------------------------------------~-- 132 (577)
T 2ymu_A 132 -----------------------------------------------------------------------------L-- 132 (577)
T ss_dssp -----------------------------------------------------------------------------E--
T ss_pred -----------------------------------------------------------------------------e--
Confidence 0
Q ss_pred EEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEE
Q psy4869 762 LFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVI 841 (2435)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 841 (2435)
T Consensus 133 -------------------------------------------------------------------------------- 132 (577)
T 2ymu_A 133 -------------------------------------------------------------------------------- 132 (577)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecC-CcEEEEeCCCCceeE
Q psy4869 842 LGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACA-SQVKIWNRPSLSCLR 920 (2435)
Q Consensus 842 ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~-~~V~Iwd~~~~~~~~ 920 (2435)
....+|...|.++.+++++..++.+.. +.+++|+........
T Consensus 133 -------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (577)
T 2ymu_A 133 -------------------------------------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT 175 (577)
T ss_dssp -------------------------------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEE
T ss_pred -------------------------------------eeccCCCCceeeeeeecCCccceecccccceeccccceeeeee
Confidence 001124456677888888888888764 788888876665555
Q ss_pred EEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCe
Q psy4869 921 TIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKS 1000 (2435)
Q Consensus 921 ~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~ 1000 (2435)
.......+.+++|+|++++|++|+.|+.|.+||. +++.+..+.+|...|.+++|+|++ ..|++++.|+.
T Consensus 176 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg----------~~l~~~~~d~~ 244 (577)
T 2ymu_A 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG----------QTIASASDDKT 244 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS----------SCEEEEETTSC
T ss_pred ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCC----------CEEEEEeCCCE
Confidence 5567888999999999999999999999999995 678888899999999999999986 58999999999
Q ss_pred EEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec
Q psy4869 1001 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1080 (2435)
Q Consensus 1001 V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~ 1080 (2435)
|++|+.+... +. ....+...|.+++|+|++++|++++.|+.|++|+.. ++.+..+.+
T Consensus 245 i~~w~~~~~~------------------~~----~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~ 301 (577)
T 2ymu_A 245 VKLWNRNGQL------------------LQ----TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTG 301 (577)
T ss_dssp EEEECTTSCE------------------EE----EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECC
T ss_pred EEEEeCCCCE------------------EE----EEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEec
Confidence 9999864210 00 112356789999999999999999999999999964 577788999
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeE
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1160 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~ 1160 (2435)
|...|.+++|+|++++|++++.|+.|++||+. +..+..+..|...|.+++|+|++++|++++.|+.|++||.. ++.+.
T Consensus 302 h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~ 379 (577)
T 2ymu_A 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQ 379 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEE
Confidence 99999999999999999999999999999975 45667788899999999999999999999999999999964 33333
Q ss_pred EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEE
Q psy4869 1161 TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1240 (2435)
Q Consensus 1161 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~v 1240 (2435)
. +..|...|.+++|+|++++|++++.|+.|++||. +++.+..+..|...|.+++|+|+++.|++++.|+.|++
T Consensus 380 ~------~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~ 452 (577)
T 2ymu_A 380 T------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452 (577)
T ss_dssp E------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E------ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEE
Confidence 3 3479999999999999999999999999999996 47778889999999999999999999999999999999
Q ss_pred EECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE
Q psy4869 1241 WDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1320 (2435)
Q Consensus 1241 wD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 1320 (2435)
||... +.+..+ ..+...+.++
T Consensus 453 w~~~~-~~~~~~----------------------------------------------------------~~~~~~v~~~ 473 (577)
T 2ymu_A 453 WNRNG-QLLQTL----------------------------------------------------------TGHSSSVRGV 473 (577)
T ss_dssp EETTS-CEEEEE----------------------------------------------------------ECCSSCEEEE
T ss_pred EECCC-CEEEEE----------------------------------------------------------cCCCCCEEEE
Confidence 99642 221111 0134578999
Q ss_pred EecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccc
Q psy4869 1321 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1400 (2435)
Q Consensus 1321 a~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~ 1400 (2435)
+|+||+++||+++.|+.|++||. +++.+..+.+|...|.+++|+|||++|++|+.|+.|++||. +++++..+.+|.+.
T Consensus 474 ~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~ 551 (577)
T 2ymu_A 474 AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS 551 (577)
T ss_dssp EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSC
T ss_pred EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCC
Confidence 99999999999999999999995 67889999999999999999999999999999999999996 68889999999999
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1401 VTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1401 V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
|++|+|+|++++|+|+|.||.|++||
T Consensus 552 v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 552 VWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 99999999999999999999999997
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9e-57 Score=617.81 Aligned_cols=561 Identities=18% Similarity=0.266 Sum_probs=464.0
Q ss_pred ceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEE
Q psy4869 77 EVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHR 154 (2435)
Q Consensus 77 ~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~ 154 (2435)
.+.+++++|||++||++. ++.+++|++.+++.+..|.||.+.|++++|+|+|++||||+.|++|+|||+.+. .....
T Consensus 20 ~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~ 98 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT 98 (611)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred ceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEe
Confidence 345789999999999986 569999999999999999999999999999999999999999999999998653 34567
Q ss_pred EecCCCcEEEEEEeecCCCcEEEEEeCC----CcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEE
Q psy4869 155 LSGHKGVITDIRFMSQPGHHFVVSSAKD----TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKV 229 (2435)
Q Consensus 155 l~gH~~~V~~v~~~~~~~~~~l~S~s~D----g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~v 229 (2435)
+.+|.++|.+++|+| ++.+|++++.| +.|++|| +|+++.++.+|...|++++|+|++. .|++|+.|++|++
T Consensus 99 ~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 99 IPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp EECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred ecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 899999999999985 45678887765 3566666 6788889999999999999999987 5999999999999
Q ss_pred EEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccccc
Q psy4869 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309 (2435)
Q Consensus 230 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2435)
||.+..+
T Consensus 175 wd~~~~~------------------------------------------------------------------------- 181 (611)
T 1nr0_A 175 FEGPPFK------------------------------------------------------------------------- 181 (611)
T ss_dssp EETTTBE-------------------------------------------------------------------------
T ss_pred EECCCCe-------------------------------------------------------------------------
Confidence 9965310
Q ss_pred chhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy4869 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389 (2435)
Q Consensus 310 ~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iw 389 (2435)
....+.+|.+.|.+++|+|+|++||+|+.|+.|++|
T Consensus 182 --------------------------------------------~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lw 217 (611)
T 1nr0_A 182 --------------------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217 (611)
T ss_dssp --------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred --------------------------------------------EeeeeccccCceEEEEECCCCCEEEEEECCCcEEEE
Confidence 012356899999999999999999999999999999
Q ss_pred ecCCceeeEEEe-e------CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccC---ccccccCcccCC
Q psy4869 390 SVYGECENIGVM-S------GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS---TFVNSCDPVRRG 459 (2435)
Q Consensus 390 d~~~~~~~~~~l-~------~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~---~~v~sv~~~~~~ 459 (2435)
|+..+.. ...+ . +|.+.|.+++|+||+++|++++.|++|++||+++++.+..+..+. .....+.| .
T Consensus 218 d~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~---~ 293 (611)
T 1nr0_A 218 NGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW---T 293 (611)
T ss_dssp ETTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE---C
T ss_pred ECCCCcE-eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE---c
Confidence 9876533 3344 2 799999999999999999999999999999999999988887542 22333444 2
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE-ecCCCCEEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL-RGHSDTVTGL 537 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l-~~h~~~V~~i 537 (2435)
...+++++.|+.+++||...+.....+ .|...|.+++|+|+|++|++|+.||.|++||+.+++....+ .+|...|.++
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~ 373 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEE
Confidence 356889999999999999888765555 57889999999999999999999999999999999887766 6799999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCCCCCce--EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 538 SLSPDGSYILSNAMDNTVRIWDIRPYVPGERC--VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 538 ~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~--v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
+|++++ .+++++.|+++++|++......... ...+ ......++|+|+|++++++ .++.+++|+ .++
T Consensus 374 ~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~- 441 (611)
T 1nr0_A 374 KTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKL-------SSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK- 441 (611)
T ss_dssp EECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEEC-------SSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-
T ss_pred EECCCC-cEEEEEcCCceEEeecCCccccccceeeeec-------CCCCcEEEEeCCCcEEEEE-eCceEEEEe--CCc-
Confidence 999776 6889999999999998753221111 1111 1245678999999888777 567899999 344
Q ss_pred EEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeee
Q psy4869 616 AYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFY 695 (2435)
Q Consensus 616 ~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 695 (2435)
+..+. |...+.+++|+||+++|++|+.|++|++|++..
T Consensus 442 ~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~----------------------------------------- 479 (611)
T 1nr0_A 442 LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG----------------------------------------- 479 (611)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEET-----------------------------------------
T ss_pred eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC-----------------------------------------
Confidence 45554 888999999999999999999999999998730
Q ss_pred eccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHH
Q psy4869 696 FCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRC 775 (2435)
Q Consensus 696 ~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (2435)
+ . +
T Consensus 480 ---------------------------------------~-~---------------------~---------------- 482 (611)
T 1nr0_A 480 ---------------------------------------A-S---------------------V---------------- 482 (611)
T ss_dssp ---------------------------------------T-E---------------------E----------------
T ss_pred ---------------------------------------C-c---------------------e----------------
Confidence 0 0 0
Q ss_pred HHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEec
Q psy4869 776 RKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLN 855 (2435)
Q Consensus 776 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~ 855 (2435)
T Consensus 483 -------------------------------------------------------------------------------- 482 (611)
T 1nr0_A 483 -------------------------------------------------------------------------------- 482 (611)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCC-CceeEE--Ee-CCCeEEE
Q psy4869 856 NNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPS-LSCLRT--ID-TGSYALS 930 (2435)
Q Consensus 856 p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~-~~~~~~--l~-~~~~v~~ 930 (2435)
......+|...|++|+|+|||++||++. ++.|++||+.+ ++.+.. +. +...+.+
T Consensus 483 ---------------------~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 483 ---------------------SEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVAC 541 (611)
T ss_dssp ---------------------EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEE
T ss_pred ---------------------eeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeE
Confidence 0000024677899999999999999987 58999999987 554433 23 6778999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEccCCc-ee-eccccc-ccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEc
Q psy4869 931 VCFVPGDRHVLVGTKDGRLLIVDIGAGE-IL-EDIPAH-SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQL 1006 (2435)
Q Consensus 931 vafspdg~~Lavg~~dg~V~vwd~~sg~-~v-~~~~~h-~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l 1006 (2435)
++|+||+++|++|+.|+.|+|||+++++ .+ ..+.+| ...|.+++|+|++ .|++++.|+.|++|++
T Consensus 542 v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~-----------~l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 542 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-----------TIVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETT-----------EEEEEETTSCEEEEEC
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCC-----------EEEEecCCCCEEEEec
Confidence 9999999999999999999999999876 33 567789 8899999999986 4999999999999996
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.7e-57 Score=617.48 Aligned_cols=534 Identities=21% Similarity=0.286 Sum_probs=448.6
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC----CeEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD----QTLAV 431 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I~v 431 (2435)
.+.+|.+.|++++|+|+|++||+|+.||.|+|||+.. .......+.+|.+.|.+++|+||+++|++++.+ +.|++
T Consensus 54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence 4668999999999999999999999999999999854 333445778999999999999999999999875 36777
Q ss_pred EECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecC
Q psy4869 432 WDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
|| .++....+.+|...|.+++|+|+++.+|++++.|++|++||...++....+ .|...|.+++|+|+|++|++|+.|
T Consensus 134 wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D 211 (611)
T 1nr0_A 134 FD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211 (611)
T ss_dssp TT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence 76 677778889999999999999999888999999999999999888777766 578899999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEe-------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 511 NDIKMWDLRTNSVVQKLR-------GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~-------~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
+.|++||+.+++.+..+. +|.+.|.+++|+|||++|++++.|++|++||++. .+++..+..+. .....
T Consensus 212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~----~~~~~~~~~~~-~~~~~ 286 (611)
T 1nr0_A 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT----LKVEKTIPVGT-RIEDQ 286 (611)
T ss_dssp SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----TEEEEEEECCS-SGGGC
T ss_pred CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC----CceeeeecCCC-Cccce
Confidence 999999999999998884 7999999999999999999999999999999983 56666665432 22345
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCccccCccee
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDKAGSIL 663 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~ 663 (2435)
+..+.| ++++|++++.|+.+++||...+++...+.+|...|++++|+|++++|++++.||+|++||+..
T Consensus 287 ~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~--------- 355 (611)
T 1nr0_A 287 QLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST--------- 355 (611)
T ss_dssp EEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred eEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---------
Confidence 667777 688999999999999999999999899999999999999999999999999999999999840
Q ss_pred ecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeee
Q psy4869 664 RSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMV 743 (2435)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~ 743 (2435)
+..
T Consensus 356 -----------------------------------------------------------------------~~~------ 358 (611)
T 1nr0_A 356 -----------------------------------------------------------------------GIS------ 358 (611)
T ss_dssp -----------------------------------------------------------------------CCE------
T ss_pred -----------------------------------------------------------------------Cce------
Confidence 000
Q ss_pred ccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhccc
Q psy4869 744 NDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRL 823 (2435)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (2435)
. .
T Consensus 359 ---------------~-------------------------------------------------------------~-- 360 (611)
T 1nr0_A 359 ---------------N-------------------------------------------------------------R-- 360 (611)
T ss_dssp ---------------E-------------------------------------------------------------E--
T ss_pred ---------------e-------------------------------------------------------------e--
Confidence 0 0
Q ss_pred ccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEe
Q psy4869 824 PTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSA 903 (2435)
Q Consensus 824 ~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g 903 (2435)
....+|...|.+++|++++.++.++
T Consensus 361 -------------------------------------------------------~~~~~h~~~v~~~~~s~~~~l~s~s 385 (611)
T 1nr0_A 361 -------------------------------------------------------VFPDVHATMITGIKTTSKGDLFTVS 385 (611)
T ss_dssp -------------------------------------------------------CSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred -------------------------------------------------------ecccCCcceEEEEEECCCCcEEEEE
Confidence 0012466788999999988777777
Q ss_pred cCCcEEEEeCCCCcee----EEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCC
Q psy4869 904 CASQVKIWNRPSLSCL----RTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQ 979 (2435)
Q Consensus 904 ~~~~V~Iwd~~~~~~~----~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~ 979 (2435)
.++.+++|+..+.... ..........+++|+|+++.++++ .++.+.+|+ .++ +..+. |...+.+++|+|++
T Consensus 386 ~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg 460 (611)
T 1nr0_A 386 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDK 460 (611)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTS
T ss_pred cCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCC
Confidence 7899999998865432 122334556789999999888877 467899998 454 44443 77789999999997
Q ss_pred CCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE
Q psy4869 980 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1059 (2435)
Q Consensus 980 ~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~ 1059 (2435)
..|++|+.|+.|++|++..... .. .....+...|.+++|+|||++|++++
T Consensus 461 ----------~~lasgs~D~~v~lwd~~~~~~------------------~~--~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 461 ----------QFVAVGGQDSKVHVYKLSGASV------------------SE--VKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp ----------CEEEEEETTSEEEEEEEETTEE------------------EE--EEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred ----------CEEEEeCCCCeEEEEEccCCce------------------ee--eeccCCCCceEEEEECCCCCEEEEEc
Confidence 6999999999999999853211 00 01134678899999999999999999
Q ss_pred CCCcEEEEEcCC-CeEEEE--EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc-ee-EEEecc-CCCEEEEEEc
Q psy4869 1060 LDTTVKIFFLDT-FKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CH-KSLLAH-EDSVTGVTFV 1133 (2435)
Q Consensus 1060 ~dg~V~i~d~~~-~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~-~~-~~l~~h-~~~V~~v~fs 1133 (2435)
.|+.|++|++.+ ++.... +.+|...|.+++|+||+++|++|+.|++|++||++.+. .. ..+.+| ...|.+++|+
T Consensus 511 ~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs 590 (611)
T 1nr0_A 511 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590 (611)
T ss_dssp TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE
T ss_pred CCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEc
Confidence 999999999987 665443 33499999999999999999999999999999998765 33 566789 8999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCC
Q psy4869 1134 PKTHYFFTTSKDGRVKQWDAD 1154 (2435)
Q Consensus 1134 p~~~~l~s~s~Dg~V~iwD~~ 1154 (2435)
|++. |++++.|+.|++||+.
T Consensus 591 ~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 591 NETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTE-EEEEETTSCEEEEECC
T ss_pred CCCE-EEEecCCCCEEEEecc
Confidence 9998 9999999999999973
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.8e-54 Score=642.65 Aligned_cols=623 Identities=20% Similarity=0.285 Sum_probs=533.8
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|+|++|++++.|++|++||+. .
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~----~ 688 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA----T 688 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT----T
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC----C
Confidence 588899999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CceEEEEeCcccccccCeEEEEEcC--CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSV--SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~sp--dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
++++..+.+|. ..+.++.|+| ++.++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|
T Consensus 689 ~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKLVHTYDEHS----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCEEEEEECCS----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CceEEEEcCCC----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 67888888875 4789999999 55689999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCccc
Q psy4869 645 KTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLH 724 (2435)
Q Consensus 645 g~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~ 724 (2435)
|.|++||+..... .... ..
T Consensus 765 g~v~vwd~~~~~~------------~~~~---------------------~~---------------------------- 783 (1249)
T 3sfz_A 765 GTLRLWDVRSANE------------RKSI---------------------NV---------------------------- 783 (1249)
T ss_dssp SEEEEEEGGGTEE------------EEEE---------------------EC----------------------------
T ss_pred CeEEEEeCCCCcc------------ccee---------------------cc----------------------------
Confidence 9999999851000 0000 00
Q ss_pred ccccccccccCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCC
Q psy4869 725 CDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDP 804 (2435)
Q Consensus 725 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 804 (2435)
.. . . ..
T Consensus 784 ---------~~-~---------------------~------~~------------------------------------- 789 (1249)
T 3sfz_A 784 ---------KR-F---------------------F------LS------------------------------------- 789 (1249)
T ss_dssp ---------CC-C---------------------C---------------------------------------------
T ss_pred ---------cc-c---------------------c------cc-------------------------------------
Confidence 00 0 0 00
Q ss_pred CCCCCCCCCcchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCC
Q psy4869 805 DDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGH 884 (2435)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH 884 (2435)
.. . ....+
T Consensus 790 ---------------------------------~~---------------~------------------------~~~~~ 797 (1249)
T 3sfz_A 790 ---------------------------------SE---------------D------------------------PPEDV 797 (1249)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ---------------------------------cC---------------C------------------------ccccc
Confidence 00 0 00012
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe--CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeec
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID--TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~--~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~ 962 (2435)
...|.+++|+|+|.+++++.++.|.+||..++..+..+. +...+.+++|+|+++++++|+.+|.|.+||+.++..+..
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~ 877 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEE
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeee
Confidence 235677999999999999999999999999999887775 667888999999999999999999999999999999999
Q ss_pred ccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCC
Q psy4869 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042 (2435)
Q Consensus 963 ~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1042 (2435)
+.+|...|.+++|+|++ ..|++++.||.|++|++........ . ....
T Consensus 878 ~~~h~~~v~~v~~spdg----------~~l~s~s~dg~v~vw~~~~~~~~~~----------------------~-~~~~ 924 (1249)
T 3sfz_A 878 CRGHLSWVHGVMFSPDG----------SSFLTASDDQTIRVWETKKVCKNSA----------------------I-VLKQ 924 (1249)
T ss_dssp ECCCSSCEEEEEECTTS----------SEEEEEETTSCEEEEEHHHHHSCCS----------------------S-SEEE
T ss_pred cCCCccceEEEEECCCC----------CEEEEEeCCCeEEEEEccccceeee----------------------e-cccc
Confidence 99999999999999986 6899999999999999753221000 0 0112
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
...+.+.+++..++.....+.+.++....+.... .+...+.+++|+|+++++++|+.||.|++||+.+++.+..+.+
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~ 1001 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDY---LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEE---ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCC
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEE---cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeeccc
Confidence 2345677777778888878888888877665432 2456899999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
|...|.+++|+|++++|++++.|+.|++||+.++.... ...|...|.+++|++++ .+++++.||.|++||+.
T Consensus 1002 h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-------~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp CSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-------CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETT
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-------EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECC
Confidence 99999999999999999999999999999999876442 34789999999999865 67889999999999999
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
+++.+..+..|...|.+++|+|+++.|++++.||.|++||+...+.+..+
T Consensus 1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l------------------------------ 1123 (1249)
T 3sfz_A 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL------------------------------ 1123 (1249)
T ss_dssp TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC------------------------------
T ss_pred CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee------------------------------
Confidence 99999999999999999999999999999999999999998764432110
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe---------c
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL---------Y 1353 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~---------~ 1353 (2435)
..+...|.+++|+|||++||+|+.||.|++||+.+++.+..+ .
T Consensus 1124 ----------------------------~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1124 ----------------------------KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp ----------------------------CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------
T ss_pred ----------------------------ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccc
Confidence 123467899999999999999999999999999998876665 6
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1354 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
.|.+.|.+++|+|||++|++++ |.|++||+.+++++..+..|...|++++|+|++.+|++++.||.|.+|++.
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred ccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 7899999999999999999986 899999999999999999999999999999999999999999999999975
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.1e-54 Score=641.31 Aligned_cols=621 Identities=22% Similarity=0.342 Sum_probs=521.1
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+.... .+..+.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE-KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 45788999999999999999999999999999999997653 45678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccC-CCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRR-GQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~-~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
.+++.+..+.+|...|.++.|.++ +..++++|+.|+.|++||+++++....+ .|...|.+++|+|++++|++|+.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999999986 3468899999999999999999888776 57889999999999999999999999
Q ss_pred EEEEECCCCcEEEEEec-------------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe-Cccc
Q psy4869 513 IKMWDLRTNSVVQKLRG-------------HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS-GHQH 578 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~-------------h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~-~h~~ 578 (2435)
|++||+++++....+.. +...+.+++|+|+|+.+++++ ++.+.+||+.. ...+..+. +|.
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~----~~~~~~~~~~~~- 840 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT----SGLLAEIHTGHH- 840 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT----CCEEEEEECSSS-
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC----CCceeEEcCCCC-
Confidence 99999999988776642 233788999999999999987 78999999984 44454444 443
Q ss_pred ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCCcccc
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPLHCDK 658 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~~~~~ 658 (2435)
..+..++|+|+++++++|+.||.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|++|++......
T Consensus 841 ---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~ 917 (1249)
T 3sfz_A 841 ---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917 (1249)
T ss_dssp ---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSC
T ss_pred ---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcccccee
Confidence 47889999999999999999999999999999999999999999999999999999999999999999997410000
Q ss_pred CcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCe
Q psy4869 659 AGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGR 738 (2435)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~ 738 (2435)
... . . .
T Consensus 918 ~~~----------------------------------------------------------~--------------~-~- 923 (1249)
T 3sfz_A 918 SAI----------------------------------------------------------V--------------L-K- 923 (1249)
T ss_dssp CSS----------------------------------------------------------S--------------E-E-
T ss_pred eee----------------------------------------------------------c--------------c-c-
Confidence 000 0 0 0
Q ss_pred eeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhh
Q psy4869 739 VHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVD 818 (2435)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (2435)
... .
T Consensus 924 ---------~~~----------~--------------------------------------------------------- 927 (1249)
T 3sfz_A 924 ---------QEI----------D--------------------------------------------------------- 927 (1249)
T ss_dssp ---------EEE----------E---------------------------------------------------------
T ss_pred ---------cee----------e---------------------------------------------------------
Confidence 000 0
Q ss_pred hhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCc
Q psy4869 819 VVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNL 898 (2435)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~ 898 (2435)
+.+.+++.
T Consensus 928 ------------------------------------------------------------------------~~~~~~~~ 935 (1249)
T 3sfz_A 928 ------------------------------------------------------------------------VVFQENET 935 (1249)
T ss_dssp ------------------------------------------------------------------------EEEETTEE
T ss_pred ------------------------------------------------------------------------EEEcCCCc
Confidence 00000000
Q ss_pred E-EEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEec
Q psy4869 899 A-LVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 899 ~-la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~ 977 (2435)
. ++......+.+|+...+.... .....+.+++|+|+++++++|..+|.|.+||+.+++.+..+.+|...|.+++|+|
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~ 1013 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDY--LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEE--ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS
T ss_pred EEEEecCCcceEEEecCcceEEE--cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC
Confidence 0 001111223333333332221 1345577889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEE
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV 1057 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lav 1057 (2435)
++ ..|++++.||.|++|++..+... ....+...|.+++|++++. +++
T Consensus 1014 dg----------~~l~s~~~dg~i~vwd~~~~~~~----------------------~~~~~~~~v~~~~~~~~~~-l~~ 1060 (1249)
T 3sfz_A 1014 DG----------KTLISSSEDSVIQVWNWQTGDYV----------------------FLQAHQETVKDFRLLQDSR-LLS 1060 (1249)
T ss_dssp SS----------SCEEEECSSSBEEEEETTTTEEE----------------------CCBCCSSCEEEEEECSSSE-EEE
T ss_pred CC----------CEEEEEcCCCEEEEEECCCCceE----------------------EEecCCCcEEEEEEcCCCc-EEE
Confidence 86 58999999999999998643210 1234678899999999664 677
Q ss_pred EECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1058 SLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1058 g~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
++.||.|++||+.+++....+.+|...|.+++|+|++++|++++.||.|++||+.+++++..+.+|...|.+++|+|+++
T Consensus 1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A 1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEE---EEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHF---FISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1214 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~---~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~ 1214 (2435)
+|++++.||.|++||+.+++....+.. ......|...|.+++|+|++.++++++ |.|++||+.+++.+..+..|.
T Consensus 1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~ 1218 (1249)
T 3sfz_A 1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNG 1218 (1249)
T ss_dssp EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSS
T ss_pred EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccC
Confidence 999999999999999998776554311 111246889999999999999999885 899999999999999999999
Q ss_pred CCEEEEEEeeCCCEEEEEECCCcEEEEECC
Q psy4869 1215 DSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1244 (2435)
Q Consensus 1215 ~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~ 1244 (2435)
..|.+++|+|+++.|++++.||.|.+|++.
T Consensus 1219 ~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1219 TNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred CcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence 999999999999999999999999999874
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.4e-51 Score=566.97 Aligned_cols=521 Identities=18% Similarity=0.280 Sum_probs=454.4
Q ss_pred EecccCCc-EEEEEECC--CCCEEEEEeCCCeEEEEecCCc-------eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC
Q psy4869 357 LLEGHGGE-IFCSKYHP--DGQYIASSGYDRQIFIWSVYGE-------CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 357 ~l~gH~~~-V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
.+.+|.+. |++++|+| ++++|++|+.||.|++||+... ......+..|...|.+++|+|++++|++++.+
T Consensus 58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 137 (615)
T 1pgu_A 58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 137 (615)
T ss_dssp EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccC
Confidence 46789999 99999999 9999999999999999999532 34566778899999999999999999999988
Q ss_pred ----CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-Ccc---cEEEEEEC
Q psy4869 427 ----QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTY---QVTSVAFN 498 (2435)
Q Consensus 427 ----g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~---~v~sv~~s 498 (2435)
+.|++|| .++.+..+.+|...|.++.|+|+++.++++++.|+.|++||+..++.+..+. +.. .|.+++|+
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 215 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS 215 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC
T ss_pred CCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC
Confidence 6788888 7788999999999999999999998899999999999999999998888775 666 79999999
Q ss_pred CC-CCEEEEEecCCeEEEEECCCCcEEEEE-e---cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 499 DT-AECVLTGGIDNDIKMWDLRTNSVVQKL-R---GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 499 p~-g~~l~sgs~dg~V~lwD~~s~~~v~~l-~---~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
|+ +++|++|+.||.|++||+++++.+..+ . +|...|.+++|+ ++++|++++.|+.|++||++ ..+.+..+
T Consensus 216 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~----~~~~~~~~ 290 (615)
T 1pgu_A 216 PDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVT----TSKCVQKW 290 (615)
T ss_dssp STTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETT----TTEEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECC----CCcEEEEE
Confidence 99 999999999999999999999999999 6 899999999999 99999999999999999998 45677777
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
..+.......+..+.|+ ++++|++|+.||.|++||+.+++++..+.+|.+.|++++| |+ |++++.||.|++|++.
T Consensus 291 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 291 TLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp ECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred cCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 77654445678888886 8999999999999999999999999999999999999999 88 9999999999999862
Q ss_pred CccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccc
Q psy4869 654 LHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILR 733 (2435)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~ 733 (2435)
.
T Consensus 366 --------~----------------------------------------------------------------------- 366 (615)
T 1pgu_A 366 --------S----------------------------------------------------------------------- 366 (615)
T ss_dssp --------E-----------------------------------------------------------------------
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCeeeeeeccccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCC
Q psy4869 734 SGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGK 813 (2435)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (2435)
+
T Consensus 367 -------------------------~------------------------------------------------------ 367 (615)
T 1pgu_A 367 -------------------------M------------------------------------------------------ 367 (615)
T ss_dssp -------------------------E------------------------------------------------------
T ss_pred -------------------------h------------------------------------------------------
Confidence 0
Q ss_pred cchhhhhcccccccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEe
Q psy4869 814 PELVDVVKRLPTIKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAF 893 (2435)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~ 893 (2435)
. .+|...|.+++|
T Consensus 368 ------------------------------------------------------------------~-~~~~~~v~~~~~ 380 (615)
T 1pgu_A 368 ------------------------------------------------------------------H-QDHSNLIVSLDN 380 (615)
T ss_dssp ------------------------------------------------------------------E-CCCCSCEEEEEC
T ss_pred ------------------------------------------------------------------c-CcccCceEEEEE
Confidence 0 124456777888
Q ss_pred cCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEE
Q psy4869 894 SSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSV 973 (2435)
Q Consensus 894 s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv 973 (2435)
++++.+++++.++.|++||+.+++... .+.+++|+|++++++++ .++.+.+|++.+++.+..+. |...+.++
T Consensus 381 ~~~~~l~~~~~d~~i~~~~~~~~~~~~------~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 452 (615)
T 1pgu_A 381 SKAQEYSSISWDDTLKVNGITKHEFGS------QPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAV 452 (615)
T ss_dssp CSTTCCEEEETTTEEEETTEEEEECSS------CEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred CCCcEEEEEeCCCCEEEEEcccCcccC------CceEEEEcCCCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEE
Confidence 444444444557999999987654332 56789999999888887 88999999999999888775 77899999
Q ss_pred EEecCCCCCCCcCCcceEEEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCC
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1052 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg 1052 (2435)
+|+ . ..|++++. ||.|++|++...... ......+...|.+++|+|+|
T Consensus 453 ~~~-~-----------~~l~~~~~~d~~i~~~~~~~~~~~--------------------~~~~~~~~~~v~~~~~s~~g 500 (615)
T 1pgu_A 453 SLS-Q-----------NYVAVGLEEGNTIQVFKLSDLEVS--------------------FDLKTPLRAKPSYISISPSE 500 (615)
T ss_dssp EEC-S-----------SEEEEEETTTSCEEEEETTEEEEE--------------------EECSSCCSSCEEEEEECTTS
T ss_pred EEc-C-----------CEEEEeecCCCeEEEEECCCcccc--------------------ccccCCccCceEEEEECCCC
Confidence 999 3 38999999 999999998642210 01123457889999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEec-CCcCEEEEEEcC----------CCCEEEEEECCCcEEEEEccCC-ceeEEE
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYG-HKLPVLSLDMSY----------DSTLIATGSGDRTVKVWGLDYG-DCHKSL 1120 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~-h~~~V~sl~~sp----------dg~~L~Sgs~Dg~I~vWd~~t~-~~~~~l 1120 (2435)
++|++++.||.|++|++.+++.+..+.+ |...|.+++|+| ++++|++|+.||.|++||++++ +++..+
T Consensus 501 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 580 (615)
T 1pgu_A 501 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL 580 (615)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred CEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhh
Confidence 9999999999999999999999999988 999999999999 9999999999999999999988 788889
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1121 ~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
.+|...|.+++|+|++. |++++.|+.|++||+..
T Consensus 581 ~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 581 NAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 99999999999999999 99999999999999864
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.4e-51 Score=563.15 Aligned_cols=550 Identities=16% Similarity=0.224 Sum_probs=477.6
Q ss_pred CCccceEEEeecCCCCeEEEEEcCCeEEEEECCCC----CeEEEecCCCCC-EEEEEEcC--CCCEEEEEeCCCCEEEEE
Q psy4869 73 GEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTT----DVISTFTGHKSA-ITVIQYDP--LGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 73 g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~----~~~~~l~gH~~~-V~~l~f~p--~g~~laSgs~Dg~I~iWd 145 (2435)
.+...+.+++|+||+++||+++ ++.|++||++++ +.+..+.+|.+. |++++|+| ++++||+|+.||.|+|||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 4566788999999999999997 889999999999 899999999999 99999999 999999999999999999
Q ss_pred ccCC--------eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCC----CcEEEEeccCCccccccccccceEEEEEEEe
Q psy4869 146 VVAE--------CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKD----TFVKIWDADTGDCFKTMAAHLTEVWGVCVMR 213 (2435)
Q Consensus 146 ~~~~--------~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~D----g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p 213 (2435)
+.++ ..+..+.+|.+.|.+++|+| ++.+|++++.| +.|++|| .++.+..+.+|...|.+++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred CCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 9744 66788899999999999985 46688888887 6888888 6788899999999999999999
Q ss_pred CCC-eEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEe
Q psy4869 214 EDS-YLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLA 292 (2435)
Q Consensus 214 ~~~-~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 292 (2435)
+++ ++++++.|+.|++||++..+.
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~------------------------------------------------------- 195 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKF------------------------------------------------------- 195 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEE-------------------------------------------------------
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcce-------------------------------------------------------
Confidence 998 799999999999999763210
Q ss_pred eeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC---cEEEEE
Q psy4869 293 LCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG---EIFCSK 369 (2435)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~---~V~~l~ 369 (2435)
...+.+|.+ .|.+++
T Consensus 196 --------------------------------------------------------------~~~~~~~~~~~~~v~~~~ 213 (615)
T 1pgu_A 196 --------------------------------------------------------------SASDRTHHKQGSFVRDVE 213 (615)
T ss_dssp --------------------------------------------------------------EEEECSSSCTTCCEEEEE
T ss_pred --------------------------------------------------------------eeeecccCCCCceEEEEE
Confidence 012446777 899999
Q ss_pred ECCC-CCEEEEEeCCCeEEEEecCCceeeEEEe-e---CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe
Q psy4869 370 YHPD-GQYIASSGYDRQIFIWSVYGECENIGVM-S---GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK 444 (2435)
Q Consensus 370 fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~l-~---~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~ 444 (2435)
|+|+ +++|++|+.||.|++||+.... .+..+ . .|...|.+++|+ ++++|++++.|+.|++||+++++.+..+.
T Consensus 214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 214 FSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 9999 9999999999999999997654 34455 5 899999999999 99999999999999999999999999998
Q ss_pred ccC----ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 445 GHS----TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 445 ~h~----~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+. ..+.++.+. ....+++++.|+.|++||++.++.+..+ .|...|.+++| |+ +++|+.||.|++||++
T Consensus 292 ~~~~~~~~~~~~~~~~--~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVAT--GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp CCTTCGGGCEEEEEEE--ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETTTT
T ss_pred CCCCcccCceeEEEeC--CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEEch
Confidence 773 455566664 3467889999999999999988777766 57889999999 88 9999999999999998
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
.+. .+|...|.+++| +++..|++++.|+.|++||++.... ...+..++|+|+|++++++
T Consensus 366 ---~~~--~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~~~~~s~~~~~~~~~ 424 (615)
T 1pgu_A 366 ---SMH--QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF---------------GSQPKVASANNDGFTAVLT 424 (615)
T ss_dssp ---EEE--CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC---------------SSCEEEEEECSSSEEEEEE
T ss_pred ---hhc--CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc---------------cCCceEEEEcCCCCEEEEe
Confidence 444 889999999999 7788999999999999999873211 0146789999999988888
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEEC-CCcEEEecCCCccccCcceeecCceeeEEEecCCC
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASS-DKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKH 678 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~-Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (2435)
.++.+.+|+..+++.+..+. |...+++++|+ +++|++++. ||.|++|++...
T Consensus 425 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~----------------------- 477 (615)
T 1pgu_A 425 -NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL----------------------- 477 (615)
T ss_dssp -TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE-----------------------
T ss_pred -CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc-----------------------
Confidence 88999999999999988885 89999999999 889999999 999999998500
Q ss_pred CeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccccceEEeeecCCc
Q psy4869 679 RQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDN 758 (2435)
Q Consensus 679 ~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (2435)
+
T Consensus 478 -----------------------------------------~-------------------------------------- 478 (615)
T 1pgu_A 478 -----------------------------------------E-------------------------------------- 478 (615)
T ss_dssp -----------------------------------------E--------------------------------------
T ss_pred -----------------------------------------c--------------------------------------
Confidence 0
Q ss_pred eEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccccccccccceeEE
Q psy4869 759 VVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTIKTASKTGKIKSV 838 (2435)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 838 (2435)
+ .
T Consensus 479 ~-------------------------------------------------------------~----------------- 480 (615)
T 1pgu_A 479 V-------------------------------------------------------------S----------------- 480 (615)
T ss_dssp E-------------------------------------------------------------E-----------------
T ss_pred c-------------------------------------------------------------c-----------------
Confidence 0 0
Q ss_pred eEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEec-CCcEEEEeCCCCc
Q psy4869 839 DVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSAC-ASQVKIWNRPSLS 917 (2435)
Q Consensus 839 ~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~~ 917 (2435)
. ..+.+|...|++++|+|+|++|++|. ++.|+|||+.+++
T Consensus 481 --------------------------------------~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 481 --------------------------------------F-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSRE 521 (615)
T ss_dssp --------------------------------------E-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --------------------------------------c-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc
Confidence 0 00224677899999999999999986 5899999999999
Q ss_pred eeEEEe--CCCeEEEEEEec----------CCCEEEEEeCCCeEEEEEccCC-ceeecccccccceeEEEEecCCCCCCC
Q psy4869 918 CLRTID--TGSYALSVCFVP----------GDRHVLVGTKDGRLLIVDIGAG-EILEDIPAHSQELWSVAMLPDQFNPNV 984 (2435)
Q Consensus 918 ~~~~l~--~~~~v~~vafsp----------dg~~Lavg~~dg~V~vwd~~sg-~~v~~~~~h~~~V~sv~~s~d~~~~~~ 984 (2435)
.+..+. +...+.+++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|++++
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~----- 596 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS----- 596 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-----
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC-----
Confidence 988776 778899999999 9999999999999999999998 7888899999999999999997
Q ss_pred cCCcceEEEEEeCCCeEEEEEcc
Q psy4869 985 YLPLQIQVVTGGGDKSVKLWQLE 1007 (2435)
Q Consensus 985 ~~p~~~~l~sgs~Dg~V~lW~l~ 1007 (2435)
. |++++.||.|++|+++
T Consensus 597 -----~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 597 -----T-LVSSGADACIKRWNVV 613 (615)
T ss_dssp -----E-EEEEETTSCEEEEEEC
T ss_pred -----C-eEEecCCceEEEEeee
Confidence 5 9999999999999975
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-47 Score=538.17 Aligned_cols=611 Identities=11% Similarity=0.096 Sum_probs=447.7
Q ss_pred EeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC
Q psy4869 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK 479 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~ 479 (2435)
...+|.+.|.+++|+|++++|++|+.||.|+|||..+++....+ .|...|.+++|++ +. +|++++.|+.|++||+++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTT
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCC
Confidence 34589999999999999999999999999999999877765554 4788899999999 54 889999999999999999
Q ss_pred CcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-----------EEEecCCCCEEEEEEcCC-CCEEE
Q psy4869 480 KNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVV-----------QKLRGHSDTVTGLSLSPD-GSYIL 547 (2435)
Q Consensus 480 ~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v-----------~~l~~h~~~V~~i~~spd-g~~la 547 (2435)
++.+..+.+...|.+++|+|++++|++|+.||.|++||+++++.. ..+.+|.+.|.+|+|+|+ +..|+
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~ 168 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL 168 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence 998888888889999999999999999999999999999998764 233679999999999996 57899
Q ss_pred EEECCCcEEEEEcCCCCCCCceEEEEeCccc--------------ccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 548 SNAMDNTVRIWDIRPYVPGERCVKVMSGHQH--------------NFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 548 s~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~--------------~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
+|+.|+.| +||++. .+++..+..|.. .....|.+++|+|+|++|++|+.||.|++||++++
T Consensus 169 ~g~~dg~v-lWd~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 169 ISYEYVTL-TYSLVE----NEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EECSSCEE-EEETTT----TEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEeCCCcE-EEECCC----CceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 99999999 999983 567777766510 01246999999999999999999999999999999
Q ss_pred cEEEE--e---cC-------------CCCCeeEEEEc----CCC-CEEEEEECCC-----cEEEecCCCccccCcceeec
Q psy4869 614 RIAYK--L---PG-------------HNGSVNDVQFH----PKE-PIIMSASSDK-----TIYLGESPLHCDKAGSILRS 665 (2435)
Q Consensus 614 ~~~~~--l---~~-------------h~~~V~~l~fs----pd~-~~Lasgs~Dg-----~I~vWd~~~~~~~~~~~~~~ 665 (2435)
+++.. + .+ |...|++++|+ |++ .+|++|+.|. .+++|++....
T Consensus 244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~--------- 314 (902)
T 2oaj_A 244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTP--------- 314 (902)
T ss_dssp CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECC---------
T ss_pred cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCC---------
Confidence 88764 2 12 34579999995 443 4677887763 56666542000
Q ss_pred CceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeecc
Q psy4869 666 GKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVND 745 (2435)
Q Consensus 666 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~ 745 (2435)
. + .. .. .+....+
T Consensus 315 ------------------------~---~--~~---~s---~~~~~~~-------------------------------- 327 (902)
T 2oaj_A 315 ------------------------R---Y--SI---TS---YEGMKNY-------------------------------- 327 (902)
T ss_dssp ------------------------C---G--GG---CC---HHHHHHH--------------------------------
T ss_pred ------------------------C---c--cc---cc---hhhhhhh--------------------------------
Confidence 0 0 00 00 0000000
Q ss_pred ccceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhccccc
Q psy4869 746 KHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPT 825 (2435)
Q Consensus 746 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (2435)
.+. |.
T Consensus 328 ----------------------------------------------------~~~-----------------------~~ 332 (902)
T 2oaj_A 328 ----------------------------------------------------YAN-----------------------PK 332 (902)
T ss_dssp ----------------------------------------------------HHS-----------------------CS
T ss_pred ----------------------------------------------------hcC-----------------------cc
Confidence 000 00
Q ss_pred ccccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecC----------
Q psy4869 826 IKTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSS---------- 895 (2435)
Q Consensus 826 ~~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~---------- 895 (2435)
. .++ + ..+|...|..+.+.+
T Consensus 333 ~------~~~--~------------------------------------------~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 333 Q------MKI--F------------------------------------------PLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp E------EEE--E------------------------------------------CCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred c------eEE--E------------------------------------------ecCCCCceEEEEECCCCCCCcCCCC
Confidence 0 000 0 001122222333322
Q ss_pred CCcEEEEe-cCCcEEEEeCCCCceeEE-------Ee-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc---CCceeecc
Q psy4869 896 DNLALVSA-CASQVKIWNRPSLSCLRT-------ID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG---AGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g-~~~~V~Iwd~~~~~~~~~-------l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~---sg~~v~~~ 963 (2435)
|...++++ .++.|++||+.++..... +. +...+.+++|++... .+|+.. .++....+
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~~~~~~~l 431 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSAAQNKDYLL 431 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHTTBCCCCSC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhcccCCCCcc
Confidence 23244444 468899999987754322 11 335677888865321 123321 12223456
Q ss_pred cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeee--eeccccccCC
Q psy4869 964 PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL--LHTRTLKLEE 1041 (2435)
Q Consensus 964 ~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~ 1041 (2435)
.+|...+.+|+|+|++ ..|++|+.||.|++||+..+.... ...+.. .......+..
T Consensus 432 ~G~~~~v~sv~~spdg----------~~laSgs~DgtVrlWd~~~g~~~~------------~~~~~~~l~~~~~~~h~~ 489 (902)
T 2oaj_A 432 KGGVRTKRQKLPAEYG----------TAFITGHSNGSVRIYDASHGDIQD------------NASFEVNLSRTLNKAKEL 489 (902)
T ss_dssp CCSBCCCCCCCCCSEE----------EEEEEEETTSEEEEEESSCCTTTT------------TBCEEEEHHHHTTCSSSC
T ss_pred cCCcCCCCcccccccC----------cEEEEecCCCcEEEEECCCccccC------------CceEEeechhhcCCCCCC
Confidence 7888888888888875 799999999999999987543210 000000 0000114567
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCC---------------------------------------------eEEE
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTF---------------------------------------------KFFI 1076 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~---------------------------------------------~~~~ 1076 (2435)
.|.+++|+|||++||+|+.||.|+||++.++ +++.
T Consensus 490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 569 (902)
T 2oaj_A 490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST 569 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence 8999999999999999999999999998765 3467
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE-----Ee-ccCCCEEEEEEc-----cCC---CEEEEE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-----LL-AHEDSVTGVTFV-----PKT---HYFFTT 1142 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~-----l~-~h~~~V~~v~fs-----p~~---~~l~s~ 1142 (2435)
.+.+|.+.|++++|+||| +||+|+.|++|++||++++..+.. +. +|...|++|+|+ ||+ .+|+++
T Consensus 570 ~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sg 648 (902)
T 2oaj_A 570 AVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCG 648 (902)
T ss_dssp EECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEE
T ss_pred EEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEE
Confidence 788999999999999999 999999999999999988766542 22 788999999999 885 799999
Q ss_pred eCCCcEEEEeC---CCcceeEEEEEEEeecccccCeEEEE-Ee----------------------CCCCEEEEEeCCCcE
Q psy4869 1143 SKDGRVKQWDA---DNFERIVTLHFFISLYGHKLPVLSLD-MS----------------------YDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1143 s~Dg~V~iwD~---~~~~~~~~~~~~~~~~~h~~~V~~l~-~s----------------------~dg~~l~sgs~Dg~V 1196 (2435)
+.|++|++||+ .+++....+.... ...|.++|..++ |+ +++..|+++ +..|
T Consensus 649 s~D~tv~~wd~~p~~~g~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~i 725 (902)
T 2oaj_A 649 TDMGEVITYKILPASGGKFDVQLMDIT-NVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDI 725 (902)
T ss_dssp ETTSEEEEEEEEECGGGCEEEEEEEEE-ECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEE
T ss_pred ecCCcEEEEEEecCCCCcEEEEecCce-ecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccce
Confidence 99999999999 6666555543211 122457787777 65 344344443 7889
Q ss_pred EEEEccCCceeeEeeccCCCEEEE---E------EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCC
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGV---T------FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNP 1256 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i---~------~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~ 1256 (2435)
|||++.++++.+....|...+..+ . +++++..|++.+.||.|++|++...+++..+....
T Consensus 726 r~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~ 794 (902)
T 2oaj_A 726 RLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPF 794 (902)
T ss_dssp EEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCc
Confidence 999999999887777777667776 5 67889999999999999999999999888776543
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-46 Score=532.91 Aligned_cols=556 Identities=11% Similarity=0.102 Sum_probs=417.6
Q ss_pred CCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeE
Q psy4869 21 SPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSL 99 (2435)
Q Consensus 21 ~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i 99 (2435)
+|++.|.+++| +|+|++||+| .+|.|+|||....+... ...+...|.+++|+| +++|++++.||.|
T Consensus 15 gh~~~V~~laf-spdg~~lAsgs~Dg~I~lw~~~~~~~~~-----------~~~~~~~V~~l~fsp-g~~L~S~s~D~~v 81 (902)
T 2oaj_A 15 GMSSKPIAAAF-DFTQNLLAIATVTGEVHIYGQQQVEVVI-----------KLEDRSAIKEMRFVK-GIYLVVINAKDTV 81 (902)
T ss_dssp ECSSCEEEEEE-ETTTTEEEEEETTSEEEEECSTTCEEEE-----------ECSSCCCEEEEEEET-TTEEEEEETTCEE
T ss_pred CCCCCcEEEEE-CCCCCEEEEEeCCCEEEEEeCCCcEEEE-----------EcCCCCCEEEEEEcC-CCEEEEEECcCeE
Confidence 67999999976 7799999998 89999999987554322 122456789999999 8899999999999
Q ss_pred EEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeE-----------EEEecCCCcEEEEEEe
Q psy4869 100 KTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL-----------HRLSGHKGVITDIRFM 168 (2435)
Q Consensus 100 ~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~-----------~~l~gH~~~V~~v~~~ 168 (2435)
++||+++++.+..+. |.+.|++++|+|++++||+|+.||.|++||+.+.+.. ..+.+|.++|.+|+|+
T Consensus 82 ~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~s 160 (902)
T 2oaj_A 82 YVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWN 160 (902)
T ss_dssp EEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEE
T ss_pred EEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEc
Confidence 999999999999987 7789999999999999999999999999999887753 2346899999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEeccCCccccccccc------------------cceEEEEEEEeCCCeEEEeeCCCcEEEE
Q psy4869 169 SQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAH------------------LTEVWGVCVMREDSYLISGSNDAELKVW 230 (2435)
Q Consensus 169 ~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h------------------~~~V~~l~~~p~~~~l~s~s~Dg~v~vw 230 (2435)
|+ +..+|++|+.||.| +||++++++++.+..| ...|++++|+|++.+|++++.|++|++|
T Consensus 161 p~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lW 238 (902)
T 2oaj_A 161 PR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238 (902)
T ss_dssp TT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred cC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEE
Confidence 74 34578999999999 9999999988777655 5789999999999999999999999999
Q ss_pred EcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccc
Q psy4869 231 NVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGID 310 (2435)
Q Consensus 231 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (2435)
|+++++.+.... +.... +..
T Consensus 239 d~~~g~~~~~r~--------------------------------l~~~~-~~~--------------------------- 258 (902)
T 2oaj_A 239 DANSGHMIMART--------------------------------VFETE-INV--------------------------- 258 (902)
T ss_dssp ETTTCCEEEEEC--------------------------------SSCSC-TTS---------------------------
T ss_pred ECCCCcEEEEEe--------------------------------ecccc-cCC---------------------------
Confidence 998653210000 00000 000
Q ss_pred hhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEEC----CCC-CEEEEEeCC--
Q psy4869 311 TTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYH----PDG-QYIASSGYD-- 383 (2435)
Q Consensus 311 ~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fs----pdg-~~Lasgs~D-- 383 (2435)
.... .+.. -..|...|++++|+ |++ .+|++|+.|
T Consensus 259 ---------------------------------~~~~-----~~~~-~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~ 299 (902)
T 2oaj_A 259 ---------------------------------PQPD-----YIRD-SSTNAAKISKVYWMCENNPEYTSLLISHKSISR 299 (902)
T ss_dssp ---------------------------------CCTT-----CCCC-CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTT
T ss_pred ---------------------------------CCCc-----CCCC-CccccCCeeEEEEEecCCCCCCEEEEeCCCCCC
Confidence 0000 0000 00366789999995 543 577888776
Q ss_pred ---CeEEEEecCCc-----------------eeeEEEee-CCCCCeeEEEEcc----------CCCEEEEEeCCCeEEEE
Q psy4869 384 ---RQIFIWSVYGE-----------------CENIGVMS-GHTGAVMDLKFST----------DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 384 ---g~I~iwd~~~~-----------------~~~~~~l~-~h~~~V~~l~~s~----------dg~~L~s~s~Dg~I~vw 432 (2435)
..+++|++... ......+. .|.+.|.++.+.+ +...+++++.|+.|++|
T Consensus 300 ~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~ 379 (902)
T 2oaj_A 300 GDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETM 379 (902)
T ss_dssp SSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEE
T ss_pred CCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEE
Confidence 37889985210 01122232 4678899999865 34478999999999999
Q ss_pred ECCCCceEEE-----------------------------------------EeccCccccccCcccCCCeEEEEEeCCCe
Q psy4869 433 DLEKGQRIKK-----------------------------------------MKGHSTFVNSCDPVRRGQLLIASGSDDCT 471 (2435)
Q Consensus 433 d~~tg~~v~~-----------------------------------------l~~h~~~v~sv~~~~~~~~llasgs~Dg~ 471 (2435)
|+.+|..... +.+|...+..++|+|++ .++++|+.|++
T Consensus 380 ~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~Dgt 458 (902)
T 2oaj_A 380 LYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHSNGS 458 (902)
T ss_dssp ETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEETTSE
T ss_pred ECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecCCCc
Confidence 9977643321 34566667778888876 68899999999
Q ss_pred EEEEeCCCCcce----Ee--e------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC------------------
Q psy4869 472 VKVWDPRKKNQA----VS--M------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN------------------ 521 (2435)
Q Consensus 472 I~vwD~~~~~~~----~~--~------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~------------------ 521 (2435)
|++||+..+... .. + .|...|.+++|+|+|++||+|+.||+|+|||+.++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~ 538 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNF 538 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------C
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceee
Confidence 999999876432 11 1 46678999999999999999999999999999866
Q ss_pred ---------------------------cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE--
Q psy4869 522 ---------------------------SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV-- 572 (2435)
Q Consensus 522 ---------------------------~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~-- 572 (2435)
+++..+.+|.+.|++|+|+||| +||+|+.|++|+|||++. ...+..
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~----~~~~~~~~ 613 (902)
T 2oaj_A 539 RRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG----PAIIYMEN 613 (902)
T ss_dssp CSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT----TEEEEEEE
T ss_pred eeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC----CeEEEEee
Confidence 2467788999999999999999 999999999999999873 333321
Q ss_pred EeCcccccccCeEEEEEc-----CCC---CEEEEecCCCeEEEEEC---CCCcEEEEecCC-----CCCeeEEE-Ec---
Q psy4869 573 MSGHQHNFEKNLLRCAWS-----VSG---LYVTAGSADKCVYIWDT---TTRRIAYKLPGH-----NGSVNDVQ-FH--- 632 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~s-----pdg---~~Lasgs~Dg~V~iwd~---~s~~~~~~l~~h-----~~~V~~l~-fs--- 632 (2435)
+..+.......|.+++|+ ||| ++|++|+.|++|++||+ .+|+.+..+.+| .++|..++ |+
T Consensus 614 ~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 693 (902)
T 2oaj_A 614 IREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKET 693 (902)
T ss_dssp GGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTT
T ss_pred hhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCC
Confidence 111100123579999999 886 89999999999999999 788888888776 47788777 76
Q ss_pred -------------------CCCCEEEEEECCCcEEEecCCCccccCcceeecCceeeEEE--e-------cCCCCeEEEE
Q psy4869 633 -------------------PKEPIIMSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTM--V-------NDKHRQILCC 684 (2435)
Q Consensus 633 -------------------pd~~~Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~l~~ 684 (2435)
+++.+|+++ +..|++|+++.... ......+...+..+ + ...++..|++
T Consensus 694 ~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~--~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~ 769 (902)
T 2oaj_A 694 KSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKS--THKGFKYPLAATGLSYISTVEKNNDRKNLTVIIT 769 (902)
T ss_dssp CCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCE--EEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccc--eeeEcccceeeeEEEEEEeccccccccCceEEEE
Confidence 344444444 78899999985321 11112222222222 1 2455778999
Q ss_pred ecCCceEEeeeeccCCC
Q psy4869 685 HGNDNVVDLFYFCTKDE 701 (2435)
Q Consensus 685 ~~~d~~~~~~~~~~~~~ 701 (2435)
..++..+.+|.+...++
T Consensus 770 ~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 770 LEINGHLRVFTIPDFKE 786 (902)
T ss_dssp EETTSEEEEEETTTCCE
T ss_pred EeCCCcEEEEECcchHH
Confidence 99999999999876443
No 11
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=100.00 E-value=7.7e-46 Score=453.86 Aligned_cols=230 Identities=30% Similarity=0.514 Sum_probs=155.4
Q ss_pred cccCCCCCCCCCcccccccccc---cCccCCCC-CCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcccc
Q psy4869 2139 LSANEDPEEFPNEDVFEHTFAE---IPNIDHSN-QTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGL 2214 (2435)
Q Consensus 2139 ~~~~~~~~ef~~~~~~~~~~~~---~~~~~~~~-~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~ 2214 (2435)
.++|||.|||++++........ ........ ....+||++||||++||+| |+|+||||||.|||||
T Consensus 33 ~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~w~~~-g~vtpVkdQg~CGSCW---------- 101 (325)
T 3hhi_A 33 VMQNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNC-PTIPQIADQSACGSCW---------- 101 (325)
T ss_dssp -----------------------CCSCBCCCCHHHHHCCCCSCEEHHHHSTTC-TTTTCCCBCCSSBCHH----------
T ss_pred ccccCCHHHHHHHhCCCCCCcccccccCccccccccccCCCCcEehhHhcCCC-CccccccCCCCccccH----------
Confidence 5889999999876442221111 00111110 1125799999999999998 6899999999999999
Q ss_pred ccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC-CcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHH
Q psy4869 2215 KGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG-QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAW 2293 (2435)
Q Consensus 2215 ~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~-~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~ 2293 (2435)
|||++++||++++|++++ .+. ||+|+|+ ||... .+.||+||++..||
T Consensus 102 ----------------------AFsa~~alE~~~~i~~~~~~~~--LSeQ~Lv----dC~~~----~~~GC~GG~~~~A~ 149 (325)
T 3hhi_A 102 ----------------------AVAAASAMSDRFCTMGGVQDVH--ISAGDLL----ACCSD----CGDGCNGGDPDRAW 149 (325)
T ss_dssp ----------------------HHHHHHHHHHHHHHTSSCSSCC--BCHHHHH----HHCGG----GBCTTBCBCHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCccc--cCHHHHH----HhccC----CCCCCCCCCHHHHH
Confidence 999999999999999987 554 9999999 77641 24689999999999
Q ss_pred HHHHHcCccCCCcccCC-CC-----C-----cccc---------------------------------ccCcccceeecc
Q psy4869 2294 MYWINAGLVDGGDYGTH-DV-----S-----MGRY---------------------------------IEGIGHAASVMG 2329 (2435)
Q Consensus 2294 ~~~~~~Gi~~~~~y~~~-~~-----~-----~~~~---------------------------------~~~~~~~~~~~~ 2329 (2435)
+|++++||++|.+|||. .. . ..+. +..++..+...|
T Consensus 150 ~yi~~~Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~y~v~~~~~i~~~i~~~G 229 (325)
T 3hhi_A 150 AYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRG 229 (325)
T ss_dssp HHHHHTCBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEEEEECSHHHHHHHHHHHC
T ss_pred HHHHHhCCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecceEeCCHHHHHHHHHHCC
Confidence 99999999999999997 21 0 0000 001112223345
Q ss_pred cCCcccc------cceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCccccccc
Q psy4869 2330 SSNPEVN------NFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIED 2403 (2435)
Q Consensus 2330 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~ 2403 (2435)
|+.+.++ .|+++++...|+ ...++|||+|||||++ +|++|||||||||+.|||+|||||+||.|+|||++
T Consensus 230 PV~v~i~~~~~f~~Y~~GVy~~~~~---~~~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~ 305 (325)
T 3hhi_A 230 PFEVAFDVYEDFIAYNSGVYHHVSG---QYLGGHAVRLVGWGTS-NGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIED 305 (325)
T ss_dssp CEEEEEEEEHHHHTCCSSEECCCSC---CEEEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTS
T ss_pred CEEEEEEeccccccccCceecCCCC---CCCCCEEEEEEEEEec-CCceEEEEEeCCCCCcccCCEEEEEcCCCeecCcc
Confidence 6555444 444443322221 2245899999999964 79999999999999999999999999999999999
Q ss_pred ceeEEEeecCcc
Q psy4869 2404 SVMAGEAKLEGI 2415 (2435)
Q Consensus 2404 ~~~~~~~~~~~~ 2415 (2435)
++++++|++++-
T Consensus 306 ~~~~g~p~~~~~ 317 (325)
T 3hhi_A 306 GGSAGIPLAPNT 317 (325)
T ss_dssp CEEEEEEC----
T ss_pred ceEEeecCCCCc
Confidence 999999999763
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-40 Score=469.20 Aligned_cols=438 Identities=15% Similarity=0.181 Sum_probs=375.0
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE 149 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~ 149 (2435)
.+.+|...|.+++|+|++.+||+++.+|.|++||+.+++.+..+.+|.+.|++++|+|+|++||+|+.||.|+|||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCC-ccccccccccceEEEEEEEe-CCCeEEEeeCCCcE
Q psy4869 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTG-DCFKTMAAHLTEVWGVCVMR-EDSYLISGSNDAEL 227 (2435)
Q Consensus 150 ~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg-~~~~~~~~h~~~V~~l~~~p-~~~~l~s~s~Dg~v 227 (2435)
+.+..+.+|.+.|.+++|+| ++.+|++++.||.|++||++++ .+...+.+|...|.+++|+| ++..|++++.||+|
T Consensus 88 ~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 88 EKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp CEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred cEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999999999985 4567999999999999999987 66778889999999999999 88899999999999
Q ss_pred EEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccc
Q psy4869 228 KVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAF 307 (2435)
Q Consensus 228 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (2435)
++||++.+...
T Consensus 166 ~vwd~~~~~~~--------------------------------------------------------------------- 176 (814)
T 3mkq_A 166 KVWSLGQSTPN--------------------------------------------------------------------- 176 (814)
T ss_dssp EEEETTCSSCS---------------------------------------------------------------------
T ss_pred EEEECCCCcce---------------------------------------------------------------------
Confidence 99998743210
Q ss_pred ccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECC--CCCEEEEEeCCCe
Q psy4869 308 GIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP--DGQYIASSGYDRQ 385 (2435)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp--dg~~Lasgs~Dg~ 385 (2435)
.....+|...|.+++|+| ++.+|++|+.||.
T Consensus 177 -----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~ 209 (814)
T 3mkq_A 177 -----------------------------------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209 (814)
T ss_dssp -----------------------------------------------EEEECCCTTCCCEEEECCSTTCCEEEEECTTSE
T ss_pred -----------------------------------------------eEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE
Confidence 001123446788999999 9999999999999
Q ss_pred EEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEE
Q psy4869 386 IFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIAS 465 (2435)
Q Consensus 386 I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llas 465 (2435)
|++||+.... ....+.+|.+.|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+|++..++++
T Consensus 210 i~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 288 (814)
T 3mkq_A 210 IKIWDYQTKS-CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIA 288 (814)
T ss_dssp EEEEETTTTE-EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEE
T ss_pred EEEEECCCCc-EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEE
Confidence 9999987653 466778999999999999999999999999999999999999999999999999999999998776445
Q ss_pred EeCCCeEEEEeCCCCcceEee--------------------------------------------cCcccEEEEEECCCC
Q psy4869 466 GSDDCTVKVWDPRKKNQAVSM--------------------------------------------NNTYQVTSVAFNDTA 501 (2435)
Q Consensus 466 gs~Dg~I~vwD~~~~~~~~~~--------------------------------------------~~~~~v~sv~~sp~g 501 (2435)
++.|+.+.+|++........+ .+...+.+++|+|+|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 289 SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence 555777888887643322211 123357899999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE 581 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~ 581 (2435)
+++++++ +|.+.+|++...... +.+.|.+++|+|||++|++++.|+.|++|+.- .+|.
T Consensus 369 ~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~------------~~~~---- 426 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNF------------KEVT---- 426 (814)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETT------------EECT----
T ss_pred CEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECC------------CCcc----
Confidence 9999998 899999998766443 24567899999999999999999999999743 1222
Q ss_pred cCeEEEEEcCCC---CEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE------ECCCcEEEec
Q psy4869 582 KNLLRCAWSVSG---LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA------SSDKTIYLGE 651 (2435)
Q Consensus 582 ~~i~~v~~spdg---~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg------s~Dg~I~vWd 651 (2435)
..+..+.|+|+| ++|++++.|+.|++||+.+++++..+..|.. .++|+|++++|+++ +.|+.+.+|.
T Consensus 427 ~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~ 502 (814)
T 3mkq_A 427 SWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF 502 (814)
T ss_dssp TCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred ceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence 245678899998 6899999999999999999999999988876 89999999999999 5555555543
No 13
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-38 Score=452.82 Aligned_cols=563 Identities=18% Similarity=0.225 Sum_probs=412.8
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
....+.+|.+.|++++|+|+|.+||+|+.||.|+|||+..+. ....+.+|.+.|.+++|+|++++|++++.||.|++||
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 446789999999999999999999999999999999987653 5567789999999999999999999999999999999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEee-cCcccEEEEEECC-CCCEEEEEecC
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSM-NNTYQVTSVAFND-TAECVLTGGID 510 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~-~~~~~v~sv~~sp-~g~~l~sgs~d 510 (2435)
+.+++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+..+ .....+ .+...|.+++|+| ++++|++++.|
T Consensus 84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 162 (814)
T 3mkq_A 84 YNTGEKVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (814)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCCCcEEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC
Confidence 999999999999999999999999985 5778999999999999876 344444 5778899999999 89999999999
Q ss_pred CeEEEEECCCCcEEEEEecCC-CCEEEEEEcC--CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHS-DTVTGLSLSP--DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~-~~V~~i~~sp--dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
|.|++||+++++....+..|. ..|.+++|+| ++.+|++++.||.|++||++ ..+++..+.+|. ..+..+
T Consensus 163 g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~----~~~~~~~~~~~~----~~v~~~ 234 (814)
T 3mkq_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ----TKSCVATLEGHM----SNVSFA 234 (814)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT----TTEEEEEEECCS----SCEEEE
T ss_pred CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC----CCcEEEEEcCCC----CCEEEE
Confidence 999999999988887777655 8999999999 99999999999999999998 356777887775 478999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCE-EEEEECCCcEEEecCCCccccCcceeecC
Q psy4869 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPI-IMSASSDKTIYLGESPLHCDKAGSILRSG 666 (2435)
Q Consensus 588 ~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~-Lasgs~Dg~I~vWd~~~~~~~~~~~~~~~ 666 (2435)
+|+|+|++|++|+.||.|++||..+++.+..+..|...|.+++|+|++.. +++++.|+.+.+|++.....
T Consensus 235 ~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 305 (814)
T 3mkq_A 235 VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP--------- 305 (814)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC---------
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc---------
Confidence 99999999999999999999999999999999999999999999999873 24444566677777641000
Q ss_pred ceeeEEEecCCCCeEEEEecCCceEEeeeeccCCCCchhHHHHHHhhccccccCCcccccccccccccCCCeeeeeeccc
Q psy4869 667 KGRVHTMVNDKHRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKYESPLHCDKAGSILRSGKGRVHTMVNDK 746 (2435)
Q Consensus 667 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~k~~~k~~~k~~~e~~~~~~~~~s~~~~~~~~~~~~~~~~ 746 (2435)
.+.+.+. +
T Consensus 306 -------------------------------------------------------~~~~~~~--------g--------- 313 (814)
T 3mkq_A 306 -------------------------------------------------------TLSLDPV--------G--------- 313 (814)
T ss_dssp -------------------------------------------------------CEEECSS--------S---------
T ss_pred -------------------------------------------------------eeEECCC--------C---------
Confidence 0000000 0
Q ss_pred cceEEeeecCCceEEEEEEeecCCchHHHHHHHHHHHHHHHhhhHHhhhhcccCCCCCCCCCCCCCCcchhhhhcccccc
Q psy4869 747 HRQILCCHGNDNVVDLFYFCTKDESSTRCRKRLRKLKKKEKKLQEEQMEVVEENPVDPDDTEGGKGKPELVDVVKRLPTI 826 (2435)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (2435)
+.+.....+..
T Consensus 314 --~~~~~~~~~~~------------------------------------------------------------------- 324 (814)
T 3mkq_A 314 --KLVWSGGKNAA------------------------------------------------------------------- 324 (814)
T ss_dssp --EEEEECCTTSC-------------------------------------------------------------------
T ss_pred --CEEEECccccc-------------------------------------------------------------------
Confidence 00000000000
Q ss_pred cccccccceeEEeEEEecCceEEEEEEecCCcccccccccCCCcccccceeeeeecCCCCceEEEEecCCCcEEEEecCC
Q psy4869 827 KTASKTGKIKSVDVILGGGGEIRLALLLNNNSLELHSLSLGGSTDSVRHLRSIHAQGHHSEVRALAFSSDNLALVSACAS 906 (2435)
Q Consensus 827 ~~~~~~~~~~~l~~~ig~~g~~~~~~~~~p~~~~~~~~~~~g~~~~~~~l~~~~l~GH~~~V~~la~s~dg~~la~g~~~ 906 (2435)
...+... ...+. ..+ ..+..+
T Consensus 325 -----~~~~~~~--------------------------~~~~~-~~~---------------------~~~~~~------ 345 (814)
T 3mkq_A 325 -----ASDIFTA--------------------------VIRGN-EEV---------------------EQDEPL------ 345 (814)
T ss_dssp -----TTCEEEE--------------------------ECCSC-CCC---------------------CSSSCB------
T ss_pred -----ceeeeee--------------------------ecccc-ccc---------------------ccCccc------
Confidence 0000000 00000 000 000000
Q ss_pred cEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccceeEEEEecCCCCCCCcC
Q psy4869 907 QVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYL 986 (2435)
Q Consensus 907 ~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~ 986 (2435)
.............+.+++|+|+|++|++++ +|.+.+|++...... +...+.+++|+|++
T Consensus 346 --------~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg------- 404 (814)
T 3mkq_A 346 --------SLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDS------- 404 (814)
T ss_dssp --------CCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTS-------
T ss_pred --------eeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCC-------
Confidence 000001112344567899999999999988 899999997654332 34578899999986
Q ss_pred CcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCC---CEEEEEECCCc
Q psy4869 987 PLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS---KLLAVSLLDTT 1063 (2435)
Q Consensus 987 p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg---~~Lavg~~dg~ 1063 (2435)
..|++++.||.|++|+.- ..+...+.+++|+|+| .+|++++.++.
T Consensus 405 ---~~la~~~~~g~v~l~~~~-----------------------------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~ 452 (814)
T 3mkq_A 405 ---NSYALIDETGQIKYYKNF-----------------------------KEVTSWSVPMHSAIDRLFSGALLGVKSDGF 452 (814)
T ss_dssp ---SCEEEECTTCCEEEEETT-----------------------------EECTTCCCCCSSCCCEEECSSSEEEEETTE
T ss_pred ---CeEEEEeCCCcEEEEECC-----------------------------CCccceEEcCCcCccceecceEEEEecCCE
Confidence 589999999999999631 1123456678899998 68888888999
Q ss_pred EEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE------ECCCcEEEEEcc-----------------CCceeEEE
Q psy4869 1064 VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG------SGDRTVKVWGLD-----------------YGDCHKSL 1120 (2435)
Q Consensus 1064 V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg------s~Dg~I~vWd~~-----------------t~~~~~~l 1120 (2435)
|++||+.+++.+..+..|.. .+.|+|+|++|+++ +.++.+.+|.-. .......+
T Consensus 453 v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (814)
T 3mkq_A 453 VYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVL 529 (814)
T ss_dssp EEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEE
T ss_pred EEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeee
Confidence 99999999999999988865 89999999999999 555555555321 00111222
Q ss_pred eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEE
Q psy4869 1121 LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWG 1200 (2435)
Q Consensus 1121 ~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd 1200 (2435)
......+.+..|. +..++.....+.+..+. .+ .... +.....++..+.|.+++..++....++.++.|+
T Consensus 530 ~~~~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~-~~~~------~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 598 (814)
T 3mkq_A 530 YELSESITSGKWV--GDVFIFTTATNRLNYFV--GG-KTYN------LAHYTKEMYLLGYLARDNKVYLADREVHVYGYE 598 (814)
T ss_dssp EEECSCCSEEEEE--TTEEEEECTTSEEEEEE--TT-EEEE------EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEE
T ss_pred eEeccEEEeeEEe--CCEEEEEcCCCeEEEEe--CC-eeEE------EEECCccEEEEEEEecCCEEEEEcCCCCEEEEE
Confidence 2212334455554 33333333233333322 11 1111 123455677777778889999988999999998
Q ss_pred cc
Q psy4869 1201 LD 1202 (2435)
Q Consensus 1201 ~~ 1202 (2435)
+.
T Consensus 599 l~ 600 (814)
T 3mkq_A 599 IS 600 (814)
T ss_dssp CC
T ss_pred EC
Confidence 65
No 14
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=100.00 E-value=4.2e-43 Score=430.63 Aligned_cols=215 Identities=26% Similarity=0.395 Sum_probs=165.7
Q ss_pred ccccccCCCCCCCCCcccccccccc----cCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFAE----IPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRT 2211 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~~----~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~ 2211 (2435)
..|.++|||+|||+++++....... ............+||++||||+ +|+|+||||||.|||||
T Consensus 110 g~N~FaDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DWR~-----~g~VtpVkdQG~CGSCW------- 177 (363)
T 3tnx_A 110 GLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQ-----KGAVTPVKNQGSCGSAW------- 177 (363)
T ss_dssp CSCTTTTSCHHHHHHHHSCSSCSCCCCSSSSSSCCCCCSCCCCCSCEEGGG-----GTCCCCCCBCCSSBCHH-------
T ss_pred eccccccCCHHHHHHHhcccccccccccccccccccCcccCCCCcceeccc-----CCCCCCCccCCcCCchh-------
Confidence 3466789999999877664322111 1111111233457999999999 89999999999999999
Q ss_pred cccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhh
Q psy4869 2212 AGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAA 2291 (2435)
Q Consensus 2212 ~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~ 2291 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. .+.||+||++..
T Consensus 178 -------------------------AFsa~~alE~~~~i~tg~~~~--LSeQ~Lv----dC~~-----~~~GC~GG~~~~ 221 (363)
T 3tnx_A 178 -------------------------AFSAVSTIESIIKIRTGNLNE--YSEQELL----DCDR-----RSYGCNGGYPWS 221 (363)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCT-----TSCTTBCCCHHH
T ss_pred -------------------------hhhhcccHHHHHHHHcCCCCC--cCHHHHh----cccC-----CCCCCCCCChHH
Confidence 999999999999999998876 9999999 7764 246899999999
Q ss_pred HHHHHHHcCccCCCcccCCCCCcccccc---------------------------CcccceeecccCCcccccceeeEEE
Q psy4869 2292 AWMYWINAGLVDGGDYGTHDVSMGRYIE---------------------------GIGHAASVMGSSNPEVNNFEKVIRL 2344 (2435)
Q Consensus 2292 a~~~~~~~Gi~~~~~y~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 2344 (2435)
||+|++++||++|.+|||.+.+..+... ..+++.+.+......|..|+++++.
T Consensus 222 a~~yi~~~Gi~~e~~yPY~~~~~~c~~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a~~~~F~~Y~sGVy~ 301 (363)
T 3tnx_A 222 ALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV 301 (363)
T ss_dssp HHHHHHHTCBCBTTTSCCCSSCCCCCGGGGCSCSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECCCSHHHHTEEEEEEC
T ss_pred HHhHHHhcCccccccCCCcCcCCCcccCCCCCceeeccceEEcchhhHHHHHHHHHcCCcEEEEEecchhhhCCCCCEEC
Confidence 9999999999999999997654221100 0123333333344457788887765
Q ss_pred EecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC----cccccccceeE
Q psy4869 2345 YSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2345 ~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
..|+. .+||||+|||||+ +|||||||||+.|||+|||||+||. |+|||++.+.+
T Consensus 302 ~~~~~----~lnHaV~iVGyG~-----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~y 359 (363)
T 3tnx_A 302 GPCGN----KVDHAVAAVGYGP-----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY 359 (363)
T ss_dssp CCCCS----CCCEEEEEEEEET-----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEE
T ss_pred CCCCC----CCCeEEEEEEcCC-----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeee
Confidence 55543 3579999999995 4999999999999999999999987 45999998774
No 15
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=100.00 E-value=3.2e-44 Score=439.40 Aligned_cols=198 Identities=36% Similarity=0.724 Sum_probs=155.6
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||++||+| |+|+||||||.||||| |||++++||++++|+
T Consensus 62 ~~lP~s~DwR~~~~~c-~~vtpVkdQg~CGSCW--------------------------------AFsa~~ale~~~~i~ 108 (317)
T 3pbh_A 62 LKLPASFDAREQWPQC-PTIKEIRDQGSCGSCW--------------------------------AFGAVEAISDRICIH 108 (317)
T ss_dssp CCCCSSEEHHHHCTTC-GGGTCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCCCEechhccCCC-CCcCCccccCCccchH--------------------------------HHHHHHHHHHHHHHH
Confidence 5799999999999998 5799999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcc-------cCCCCC---------cc
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDY-------GTHDVS---------MG 2315 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y-------~~~~~~---------~~ 2315 (2435)
+++.....||+|+|+ ||... ..+.||+||++..||+|++++||++|++| ||.... ..
T Consensus 109 ~~~~~~~~LSeq~Lv----dC~~~---~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~~~~ 181 (317)
T 3pbh_A 109 TNAHVSVEVSAEDLL----TCCGS---MCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPP 181 (317)
T ss_dssp TTTSCCCCBCHHHHH----HHSCT---TTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCCBSSCCCSCCCCCCCTTCCSC
T ss_pred hCCCCcccCCHHHHH----Hhccc---cCCCCCCCCCHHHHHHHHHHhCCCcchhccCCCCCcCcccCcccccccCcCCC
Confidence 886333449999999 77631 23468999999999999999999999888 996310 00
Q ss_pred c----------------c--------------------ccCcccceeecccCCc------ccccceeeEEEEecCCCcCc
Q psy4869 2316 R----------------Y--------------------IEGIGHAASVMGSSNP------EVNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2316 ~----------------~--------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 2353 (2435)
+ + ...++..+...+|+.+ .|..|+++++...|+ ..
T Consensus 182 C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~~~---~~ 258 (317)
T 3pbh_A 182 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTG---EM 258 (317)
T ss_dssp CCSCCCCCCCCCSCCSSCCSCGGGSEECBCCCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECCCSC---CE
T ss_pred CCCcCCCCcccccccCCCccceeeeeeeeeecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEccCCC---CC
Confidence 0 0 0011112223455544 355566655433332 22
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
.++|||+|||||++ +|++|||||||||++|||+|||||+||.|+||||+.+++++|+++
T Consensus 259 ~~~HaV~iVGyG~~-~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~~d 317 (317)
T 3pbh_A 259 MGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317 (317)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCC
T ss_pred CCCEEEEEEEEEEe-CCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecCCC
Confidence 45899999999975 799999999999999999999999999999999999999999864
No 16
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=100.00 E-value=7.3e-43 Score=440.19 Aligned_cols=234 Identities=22% Similarity=0.364 Sum_probs=154.4
Q ss_pred cccccCCCCCCCCCccccccccc-c--cCccCC-CCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2137 EKLSANEDPEEFPNEDVFEHTFA-E--IPNIDH-SNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2137 e~~~~~~~~~ef~~~~~~~~~~~-~--~~~~~~-~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
.+.++|||.|||+++++...... . ...... ......+||++||||+++ +.++|+||||||.|||||
T Consensus 166 ~n~faDlT~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~~--g~~~VtpVkdQG~CGSCW-------- 235 (441)
T 3pdf_A 166 YMEYETLTLGDMIRRSGGHSRKIPRPKPAPLTAEIQQKILFLPTSWDWRNVH--GINFVSPVRNQASCGSCY-------- 235 (441)
T ss_dssp ----------------------------------------CCCSCEETTCBT--TBCCSCCCCBCTTSBCHH--------
T ss_pred ccccccCCHHHHHHHhCCCcccccccccCccccccccccccCCCCEECCcCC--CCCccCcccccCCCchHH--------
Confidence 46789999999998775322110 0 001111 122345799999999942 235899999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|++++.....||+|+|+ ||.. .+.||+||++..+
T Consensus 236 ------------------------AFsa~~alE~~~~i~tg~~~~~~LSeQ~Lv----dC~~-----~~~GC~GG~~~~a 282 (441)
T 3pdf_A 236 ------------------------SFASMGMLEARIRILTNNSQTPILSPQEVV----SCSQ-----YAQGCEGGFPYLI 282 (441)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTTSCCCCBCHHHHH----HHCT-----TSCTTBCCCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhccCCCccccCHHHHH----hhcc-----CCCCCCCCchhHH
Confidence 999999999999999998766569999999 7764 2578999999987
Q ss_pred -HHHHHHcCccCCCcccCCCCCccccc------------------------cCcccceeecccCCc------ccccceee
Q psy4869 2293 -WMYWINAGLVDGGDYGTHDVSMGRYI------------------------EGIGHAASVMGSSNP------EVNNFEKV 2341 (2435)
Q Consensus 2293 -~~~~~~~Gi~~~~~y~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~------~~~~~~~~ 2341 (2435)
|+|++++||++|.+|||......+.. ..++.++...+|+.+ .|..|+++
T Consensus 283 a~~yi~~~Gi~tE~~yPY~~~~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sG 362 (441)
T 3pdf_A 283 AGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKG 362 (441)
T ss_dssp TTHHHHHTCBCBGGGSCCCSSCCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSS
T ss_pred HHHHHHhcCCCcHHHeeecccCCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCc
Confidence 89999999999999999764322110 011122233455444 45556665
Q ss_pred EEEEecCCC-cC--cccceEEEEEEeccC-CCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2342 IRLYSCEGS-IN--PRYIHSVKIIGWGKS-SQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2342 ~~~~~~~~~-~~--~~~~Hav~iVGyg~~-~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
++...+... .+ ..++|||+|||||++ ++|++|||||||||+.|||+|||||+||.|+||||++++++.|.+.
T Consensus 363 Vy~~~~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~P~~~ 438 (441)
T 3pdf_A 363 IYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATPIPK 438 (441)
T ss_dssp EECCC---CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEEECCC
T ss_pred eEecCCCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEeeccCC
Confidence 543222111 11 247899999999986 4799999999999999999999999999999999999999988653
No 17
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=100.00 E-value=3.2e-42 Score=421.16 Aligned_cols=221 Identities=22% Similarity=0.405 Sum_probs=165.8
Q ss_pred cccccccCCCCCCCCCcccccccc--c-cc--CccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcC
Q psy4869 2135 HSEKLSANEDPEEFPNEDVFEHTF--A-EI--PNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQP 2209 (2435)
Q Consensus 2135 ~~e~~~~~~~~~ef~~~~~~~~~~--~-~~--~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~ 2209 (2435)
...|.++|||.|||++ ++..... . .. ........ ..+||++||||+ + +|+||||||.|||||
T Consensus 74 lg~N~FaDlt~eEf~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~lP~~~DwR~-----~-~vtpVkdQg~CGSCW----- 140 (329)
T 3qt4_A 74 KAMNQFGDMSKEEFLA-YVNRGKAQKPKHPENLRMPYVSS-KKPLAASVDWRS-----N-AVSEVKDQGQCGSSW----- 140 (329)
T ss_dssp ECCCGGGGCCHHHHHH-HHHHTCCC------CCEEECCCC-CSCCCSCEECTT-----T-SCCCCCBCCSSBCHH-----
T ss_pred EeccccccCCHHHHHH-hcCCcccccccccccccccccCC-ccCCCCCEEccc-----c-ccCCCccCCCCcChH-----
Confidence 3557788999999987 5432211 0 00 00111111 147999999999 7 899999999999999
Q ss_pred CccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCCh
Q psy4869 2210 RTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDS 2289 (2435)
Q Consensus 2210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~ 2289 (2435)
|||++++||++++++++.++. ||+|+|+ ||... +++.||+||++
T Consensus 141 ---------------------------AFaa~~alE~~~~i~~g~~~~--LSeQ~Lv----dC~~~---~g~~GC~GG~~ 184 (329)
T 3qt4_A 141 ---------------------------SFSTTGAVEGQLALQRGRLTS--LSEQNLI----DCSSS---YGNAGCDGGWM 184 (329)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCGG---GTCCTTBCCCH
T ss_pred ---------------------------HHHHHHHHHHHHHHHcCCccc--CCHHHHH----Hhccc---cCCCCCCCCCh
Confidence 999999999999999998766 9999999 77642 34679999999
Q ss_pred hhHHHHHHHcCccCCCcccCCCCCcccc--------------------ccCcccceeecccCCc------ccccceeeEE
Q psy4869 2290 AAAWMYWINAGLVDGGDYGTHDVSMGRY--------------------IEGIGHAASVMGSSNP------EVNNFEKVIR 2343 (2435)
Q Consensus 2290 ~~a~~~~~~~Gi~~~~~y~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~ 2343 (2435)
..||+|++++||++|.+|||......+. +..++.++...+|+.+ .|..|+++++
T Consensus 185 ~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy 264 (329)
T 3qt4_A 185 DSAFSYIHDYGIMSESAYPYEAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF 264 (329)
T ss_dssp HHHHHHHHHSCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEE
T ss_pred hHHHHHHHHcCCCcHHHeeeecCCCCCCCCcccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCcee
Confidence 9999999999999999999976532221 0011112222344433 4666666554
Q ss_pred EE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2344 LY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2344 ~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.. .|. ...++|||+|||||++ +|++|||||||||+.|||+|||||+||. |+|||++.+.+.
T Consensus 265 ~~~~c~---~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~yp 327 (329)
T 3qt4_A 265 YDQTCN---QSDLNHGVLVVGYGSD-NGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAASYP 327 (329)
T ss_dssp CCSSCC---SSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTCEEE
T ss_pred ecCCCC---CCcCCEEEEEEEEEee-CCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCceeEe
Confidence 32 232 2357899999999975 7899999999999999999999999998 999999988743
No 18
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=100.00 E-value=3.5e-42 Score=422.58 Aligned_cols=222 Identities=24% Similarity=0.425 Sum_probs=166.1
Q ss_pred ccccccCCCCCCCCCccccccccc----ccCccCCCC----CCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCC
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA----EIPNIDHSN----QTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSH 2207 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~----~~~~~~~~~----~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~ 2207 (2435)
..|.++|||.|||++.++...... ....+.... ....+||++||||+ +|+|+||||||.|||||
T Consensus 70 g~N~FaDlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~-----~g~vtpVkdQg~CGSCW--- 141 (331)
T 3qj3_A 70 GVNLFTDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRD-----QGMVSPVKNQGSCGSSW--- 141 (331)
T ss_dssp CCSTTTTCCHHHHHHHHSCCCCCSSTTTTCEEECSGGGGTCCSSCCCCSSEEGGG-----GTCSCCCCBCCSSCCHH---
T ss_pred cccccccCCHHHHHHHhccccccccccccCcccccccccccccccCCCcceeccc-----CCccCCCccCcccchhh---
Confidence 557788999999987665322111 000111110 02347999999999 89999999999999999
Q ss_pred cCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC--CcCccCCccceecccCCCCCCCCCCCCCCCC
Q psy4869 2208 QPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG--QVKPILSPQHLICSCTNCTRMHTKTPMSMCM 2285 (2435)
Q Consensus 2208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~--~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~ 2285 (2435)
|||++++||++++|+++. .+. ||+|+|+ ||... +.||+
T Consensus 142 -----------------------------AFaa~~alE~~~~i~~g~~~~~~--LSeQ~Lv----dC~~~-----~~GC~ 181 (331)
T 3qj3_A 142 -----------------------------AFSSTGAIESQMKIANGAGYDSS--VSEQQLV----DCVPN-----ALGCS 181 (331)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHCTTSCCC--BCHHHHH----HHCTT-----SCGGG
T ss_pred -----------------------------HHHHHHHHHHHHHHHhCCCcccC--cCHHHHh----hhccC-----CCCCC
Confidence 999999999999999998 554 9999999 88752 57899
Q ss_pred CCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------------cCcccceeecccCCcc------cccc
Q psy4869 2286 GGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNPE------VNNF 2338 (2435)
Q Consensus 2286 gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~------~~~~ 2338 (2435)
||++..||+|++++ ||++|.+|||......+.. ..++.++...+|+.+. |..|
T Consensus 182 GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y 261 (331)
T 3qj3_A 182 GGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSY 261 (331)
T ss_dssp CCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGE
T ss_pred CCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 99999999999998 9999999999765422210 0111122223444332 6666
Q ss_pred eeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2339 EKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2339 ~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
+++++.. ..+....++|||+|||||++ +|++|||||||||+.|||+|||||+||. |+|||++++.+.
T Consensus 262 ~~Gvy~~--~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 329 (331)
T 3qj3_A 262 SGGVYYN--PTCETNKFTHAVLIVGYGNE-NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVP 329 (331)
T ss_dssp EEEEECC--TTCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred cCceEeC--CCCCCCcCCEEEEEEEEecc-CCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCceeee
Confidence 6654432 22222357899999999975 7899999999999999999999999998 999999988743
No 19
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=100.00 E-value=5.2e-42 Score=419.73 Aligned_cols=223 Identities=24% Similarity=0.389 Sum_probs=165.0
Q ss_pred ccccccCCCCCCCCCcccccccccccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLK 2215 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~ 2215 (2435)
..|.++|||.|||++.++...................+||++||||+ +|+|+||||||.|||||
T Consensus 59 g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW----------- 122 (316)
T 1cs8_A 59 AMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWRE-----KGYVTPVKNQGQCGSCW----------- 122 (316)
T ss_dssp CCCTTTTCCHHHHHHHHCCBCCCCCSCCEECCCCTTCCCCSCEEGGG-----GTCCCCCCBCCSSSCHH-----------
T ss_pred ccCccCCCCHHHHHHHhcCCCCCccccCccccCccccCCCCcEecCC-----CCCcCCCCcccCCccHH-----------
Confidence 44678899999997654432211100000111122346999999999 89999999999999999
Q ss_pred cceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHH
Q psy4869 2216 GLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMY 2295 (2435)
Q Consensus 2216 ~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~ 2295 (2435)
|||++++||++++|+++..+. ||+|+|+ ||... +++.||+||++..||+|
T Consensus 123 ---------------------AFsa~~alE~~~~i~~g~~~~--LSeq~lv----dC~~~---~g~~gC~GG~~~~a~~y 172 (316)
T 1cs8_A 123 ---------------------AFSATGALEGQMFRKTGRLIS--LSEQNLV----DCSGP---QGNEGCNGGLMDYAFQY 172 (316)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHCGG---GTCCGGGCBCHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHcCCCcC--cCHHHHH----Hhccc---cCCCCCCCCCHHHHHHH
Confidence 999999999999999987655 9999999 77641 24679999999999999
Q ss_pred HH-HcCccCCCcccCCCCCccccc-------------------cCcccceeecccCCc-------ccccceeeEEEEe-c
Q psy4869 2296 WI-NAGLVDGGDYGTHDVSMGRYI-------------------EGIGHAASVMGSSNP-------EVNNFEKVIRLYS-C 2347 (2435)
Q Consensus 2296 ~~-~~Gi~~~~~y~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~ 2347 (2435)
++ +.||++|.+|||......+.. ..++.++...||+.+ .|..|+++++... |
T Consensus 173 i~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~c 252 (316)
T 1cs8_A 173 VQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDC 252 (316)
T ss_dssp HHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCTTC
T ss_pred HHHhCCcCchhccCCCCCCCCcCCCCccceeEeccEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCCCC
Confidence 97 679999999999765322210 011112222345443 3556666544322 4
Q ss_pred CCCcCcccceEEEEEEec---cCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeE
Q psy4869 2348 EGSINPRYIHSVKIIGWG---KSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMA 2407 (2435)
Q Consensus 2348 ~~~~~~~~~Hav~iVGyg---~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~ 2407 (2435)
+. ..++|||+||||| ++++|++|||||||||+.|||+|||||.||. |+|||++.+.+
T Consensus 253 ~~---~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~ 313 (316)
T 1cs8_A 253 SS---EDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASY 313 (316)
T ss_dssp CS---SCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEE
T ss_pred CC---CCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCccceeeE
Confidence 32 3578999999999 6547899999999999999999999999998 89999998774
No 20
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=100.00 E-value=2.3e-42 Score=422.54 Aligned_cols=221 Identities=22% Similarity=0.378 Sum_probs=162.7
Q ss_pred ccccccCCCCCCCCCccccccccc-ccCc-cCCCCCCCCC-CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EIPN-IDHSNQTDEA-IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~~~-~~~~~~~~~~-lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||++.++...... .... .........+ ||++||||+ +|+|+||||||.|||||
T Consensus 59 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW-------- 125 (314)
T 1by8_A 59 AMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRK-----KGYVTPVKNQGQCGSCW-------- 125 (314)
T ss_dssp CCCTTSSSCHHHHHHHSCCCCCCSCCCCSSSSSBCCCCSSCCCSCCBSTT-----TTCSCCCCBCCSSSCHH--------
T ss_pred cccccccCCHHHHHHHhccCCCCcccccCCccccccccccCCCCeEeCCC-----CCCCCCcccCCCCCCcH--------
Confidence 346678999999976554322111 0000 0111111223 999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ++.||+||++..|
T Consensus 126 ------------------------AFs~~~alE~~~~i~~g~~~~--LSeq~lv----dC~~-----~~~gC~GG~~~~a 170 (314)
T 1by8_A 126 ------------------------AFSSVGALEGQLKKKTGKLLN--LSPQNLV----DCVS-----ENDGCGGGYMTNA 170 (314)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----TTCT-----TSCGGGCCCSHHH
T ss_pred ------------------------HHHHHHHHHHHHHHhcCCCcc--cCHHHHH----HhcC-----CCCCCcCCCHHHH
Confidence 999999999999999887665 9999999 8874 4579999999999
Q ss_pred HHHHH-HcCccCCCcccCCCCCccccc--------------------cCcccceeecccCCcc-------cccceeeEEE
Q psy4869 2293 WMYWI-NAGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNPE-------VNNFEKVIRL 2344 (2435)
Q Consensus 2293 ~~~~~-~~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 2344 (2435)
|+|++ +.||++|.+|||......+.. ..++.++...||+.+. |..|+++++.
T Consensus 171 ~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~ 250 (314)
T 1by8_A 171 FQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY 250 (314)
T ss_dssp HHHHHHTTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBC
T ss_pred HHHHHHcCCcCcHhhCCCCCCCCCcCCCCccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceec
Confidence 99998 569999999999764322210 0111122234555444 4445554332
Q ss_pred Ee-cCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2345 YS-CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2345 ~~-~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.. |+. ..++|||+|||||++ +|++|||||||||++|||+|||||.||. |+|||++.+.++
T Consensus 251 ~~~c~~---~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 312 (314)
T 1by8_A 251 DESCNS---DNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFP 312 (314)
T ss_dssp CTTCCS---SCCCEEEEEEEEEEE-TTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEEE
T ss_pred CCCCCC---CCCCeEEEEEEEecc-CCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEEe
Confidence 21 332 257899999999976 7899999999999999999999999996 999999988743
No 21
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=100.00 E-value=8.6e-42 Score=417.61 Aligned_cols=223 Identities=23% Similarity=0.390 Sum_probs=163.2
Q ss_pred ccccccCCCCCCCCCccccccccc-ccCccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcccc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EIPNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGL 2214 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~ 2214 (2435)
..|.++|||.|||++.++...... .............+||++||||+ +|+|+||||||.|||||
T Consensus 60 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW---------- 124 (315)
T 2c0y_A 60 GMNHLGDMTSEEVMSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWRE-----KGCVTEVKYQGSCGAAW---------- 124 (315)
T ss_dssp CCCGGGGCCHHHHHHHTTSBCCCCGGGSCBCC------CCCSCEETTT-----TTCCCCCCBCTTSCCHH----------
T ss_pred ccCccccCCHHHHHHHhcCCCCCccccCCccccCcccCCCCCeEecCC-----CCCcCCCcCcccCCCcH----------
Confidence 346788999999976554322111 00001111112346999999999 89999999999999999
Q ss_pred ccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHH
Q psy4869 2215 KGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294 (2435)
Q Consensus 2215 ~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~ 2294 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ..+++.||+||++..||+
T Consensus 125 ----------------------Afs~~~alE~~~~i~~g~~~~--LSeq~lv----dC~~--~~~~~~gC~GG~~~~a~~ 174 (315)
T 2c0y_A 125 ----------------------AFSAVGALEAQLKLKTGKLVS--LSAQNLV----DCST--EKYGNKGCNGGFMTTAFQ 174 (315)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HHSC--GGGTCCGGGCBCHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHhCCCcC--cCHHHHH----hhcc--cccCCCCCCCCCHHHHHH
Confidence 999999999999999987665 9999999 7762 012467999999999999
Q ss_pred HHHH-cCccCCCcccCCCCCccccc--------------------cCcccceeecccCCc-------ccccceeeEEEEe
Q psy4869 2295 YWIN-AGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNP-------EVNNFEKVIRLYS 2346 (2435)
Q Consensus 2295 ~~~~-~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 2346 (2435)
|+++ .||++|.+|||......+.. ..++.++...||+.+ .|..|+++++...
T Consensus 175 yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~ 254 (315)
T 2c0y_A 175 YIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP 254 (315)
T ss_dssp HHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCT
T ss_pred HHHHhCCcCchhcCCCccCCCCcccCCcccccccCCeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCC
Confidence 9985 69999999999764322210 011112223345443 3555666544322
Q ss_pred -cCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2347 -CEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2347 -~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
|+. .++|||+|||||++ +|++|||||||||++|||+|||||.||. |+|||++.+.++
T Consensus 255 ~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p 313 (315)
T 2c0y_A 255 SCTQ----NVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYP 313 (315)
T ss_dssp TCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred CCCC----cCCEEEEEEEEeec-CCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCceeEEe
Confidence 432 57899999999976 7899999999999999999999999996 999999988743
No 22
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=100.00 E-value=1.4e-41 Score=416.43 Aligned_cols=218 Identities=26% Similarity=0.374 Sum_probs=164.2
Q ss_pred ccccccCCCCCCCCCccccccccc-cc-C-ccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA-EI-P-NIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~-~~-~-~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||+++++...... .. . ..........+||++||||+ +|+|+||||||.|||||
T Consensus 66 g~N~FaDlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vt~VkdQg~CGSCW-------- 132 (322)
T 1pci_A 66 GLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRK-----KGAVTPVRHQGSCGSCW-------- 132 (322)
T ss_dssp CSCTTTTSCHHHHHHHHCCCBCCCSSCCCCSEECCCCCCCCSCSCEETTT-----TTCCCCCCBCTTSCCHH--------
T ss_pred ecCccccCCHHHHHHHhcCCCCccccccccccccccccccCCCCeEeccc-----CCCCCCccccccCCccH--------
Confidence 345678999999977654322111 10 0 00011122346999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ++.||+||++..|
T Consensus 133 ------------------------AFaa~~alE~~~~i~~g~~~~--lSeq~lv----dC~~-----~~~gC~GG~~~~a 177 (322)
T 1pci_A 133 ------------------------AFSAVATVEGINKIRTGKLVE--LSEQELV----DCER-----RSHGCKGGYPPYA 177 (322)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSCCCC--BCHHHHH----HSCT-----TSCGGGCBCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHcCCccc--cCHHHHH----hhcC-----CCCCCCCCCHHHH
Confidence 999999999999999987766 9999999 7763 3578999999999
Q ss_pred HHHHHHcCccCCCcccCCCCCccccc----------cC-----------cccceeecccCCc-------ccccceeeEEE
Q psy4869 2293 WMYWINAGLVDGGDYGTHDVSMGRYI----------EG-----------IGHAASVMGSSNP-------EVNNFEKVIRL 2344 (2435)
Q Consensus 2293 ~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~~-----------~~~~~~~~~~~~~-------~~~~~~~~~~~ 2344 (2435)
|+|++++||++|.+|||......+.. .. ++.++ ..||+.+ .|..|+++++.
T Consensus 178 ~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~ 256 (322)
T 1pci_A 178 LEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAI-AKQPVSVVVESKGRPFQLYKGGIFE 256 (322)
T ss_dssp HHHHHHHCBCBTTTSCCCSSCCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHH-HHSCEEEEECTTCHHHHTEEEEEEC
T ss_pred HHHHHHhCCCchhhCCCCCCCCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHH-HHCCEEEEEecccccccccCCeEeC
Confidence 99999999999999999654321110 00 11111 1244433 45566776654
Q ss_pred EecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC----cccccccceeE
Q psy4869 2345 YSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2345 ~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
..|+. .++|||+|||||++ +|++|||||||||+.|||+|||||.||. |+|||++.+.+
T Consensus 257 ~~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~~y 318 (322)
T 1pci_A 257 GPCGT----KVDGAVTAVGYGKS-GGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYY 318 (322)
T ss_dssp CSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCCEE
T ss_pred CCCCC----CCCEEEEEEEEecc-CCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccceeE
Confidence 34543 36899999999976 6899999999999999999999999996 99999998874
No 23
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=100.00 E-value=1.4e-42 Score=421.94 Aligned_cols=227 Identities=19% Similarity=0.320 Sum_probs=166.9
Q ss_pred ccccccCCCCCCCCCccccccccc----ccCccCCC---CCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCc
Q psy4869 2136 SEKLSANEDPEEFPNEDVFEHTFA----EIPNIDHS---NQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQ 2208 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~~~~~~----~~~~~~~~---~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~ 2208 (2435)
..|.++|||.|||++.++...... ....+... .....+||++||||+ +|+|+||||||.|||||
T Consensus 45 g~N~F~Dlt~eEf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW---- 115 (312)
T 1xkg_A 45 AINHLSDLSLDEFKNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQ-----MRTVTPIRMQGGCGSAW---- 115 (312)
T ss_dssp CCCTTTTSCHHHHHHHHSBCHHHHHHHHHHHC-----CBCCCCSCCCSCEETTT-----TTCCCCCCBCCSSBCHH----
T ss_pred CCCcccCCCHHHHHHHhcCCCCccccccCCcccccccccccccccCCCcccccc-----CCCcCCccccCCCCccH----
Confidence 446788999999977443211100 00011100 001237999999999 89999999999999999
Q ss_pred CCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCC
Q psy4869 2209 PRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGD 2288 (2435)
Q Consensus 2209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~ 2288 (2435)
|||++++||++++|+++..+. ||+|+|+ ||.. ..||+||+
T Consensus 116 ----------------------------AFsa~~alE~~~~i~~g~~~~--LSeq~lv----dC~~------~~GC~GG~ 155 (312)
T 1xkg_A 116 ----------------------------AFSGVAATESAYLAYRDQSLD--LAEQELV----DCAS------QHGCHGDT 155 (312)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCC--BCHHHHH----HHTC------SSTTBCCC
T ss_pred ----------------------------HHHHHHHHHHHHHHHhCCCCC--cCHHHHH----hccC------CCCCCCCC
Confidence 999999999999999987655 9999999 7761 15899999
Q ss_pred hhhHHHHHHHcCccCCCcccCCCCCcccc-------------------ccCcccceee-cccCCccccccee-eEEEEec
Q psy4869 2289 SAAAWMYWINAGLVDGGDYGTHDVSMGRY-------------------IEGIGHAASV-MGSSNPEVNNFEK-VIRLYSC 2347 (2435)
Q Consensus 2289 ~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~-------------------~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~ 2347 (2435)
+..||+|++++||++|.+|||......+. ...++.++.. .||+.+.++.+.. .|+.|..
T Consensus 156 ~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~ 235 (312)
T 1xkg_A 156 IPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDG 235 (312)
T ss_dssp HHHHHHHHHHHCEEBGGGSCCCSSCCCCCCCSSCEECCSEEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCS
T ss_pred HHHHHHHHHHcCCCccccCCccCCCCCCCCCCCceEEEeeEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCC
Confidence 99999999999999999999965432221 0011222333 5676665554432 2333333
Q ss_pred CCCc------CcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecC
Q psy4869 2348 EGSI------NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLE 2413 (2435)
Q Consensus 2348 ~~~~------~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~ 2413 (2435)
+.+. ... +|||+|||||++ +|++|||||||||++|||+|||||.|+.|+|||++.+.+++|..+
T Consensus 236 GVy~~~~c~~~~~-~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~~~ 305 (312)
T 1xkg_A 236 RTIIQRDNGYQPN-YHAVNIVGYSNA-QGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILGQT 305 (312)
T ss_dssp SSCBCCCCSSCCE-EEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECTTC
T ss_pred cEEcCCCCCCCcC-ceEEEEEEEecc-CCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeeccCC
Confidence 3221 124 899999999975 789999999999999999999999999999999999998777544
No 24
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=100.00 E-value=1.3e-41 Score=415.01 Aligned_cols=222 Identities=24% Similarity=0.404 Sum_probs=163.1
Q ss_pred ccccccCCCCCCCCCcccc-ccccc-cc-CccCCCCCCCCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCcc
Q psy4869 2136 SEKLSANEDPEEFPNEDVF-EHTFA-EI-PNIDHSNQTDEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTA 2212 (2435)
Q Consensus 2136 ~e~~~~~~~~~ef~~~~~~-~~~~~-~~-~~~~~~~~~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~ 2212 (2435)
..|.++|||.|||++.++. ..... .. ......... .+||++||||+ +|+|+||||||.|||||
T Consensus 52 g~N~F~Dlt~eEf~~~~~g~~~~~~~~~~~~~~~~~~~-~~lP~~~DwR~-----~g~vtpVkdQg~CGSCW-------- 117 (310)
T 2o6x_A 52 GLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANN-RAVPDKIDWRE-----SGYVTEVKDQGNCGSGW-------- 117 (310)
T ss_dssp CCCTTTTSCHHHHHHHHCCCCCCGGGGSCSSEECCC-----CCSCEEGGG-----GTCCCCCCBCCSSCCHH--------
T ss_pred eccccCCCCHHHHHHHhcCCCCCcccccccCCcccccc-CCCCCeEecCc-----CCCCCCcccCCCCCccH--------
Confidence 3466789999999765443 11111 00 000011111 26999999999 89999999999999999
Q ss_pred ccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhH
Q psy4869 2213 GLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAA 2292 (2435)
Q Consensus 2213 ~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a 2292 (2435)
|||++++||++++|+++..+. ||+|+|+ ||... +++.||+||++..|
T Consensus 118 ------------------------Afa~~~alE~~~~i~~g~~~~--LS~q~lv----dC~~~---~~~~gC~GG~~~~a 164 (310)
T 2o6x_A 118 ------------------------AFSTTGTMEGQYMKNERTSIS--FSEQQLV----DCSRP---WGNNGCGGGLMENA 164 (310)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHSSCCC--BCHHHHH----HHCGG---GTCCGGGCCCHHHH
T ss_pred ------------------------HHHhHHHHHHHHHHHhCCCcC--cCHHHHH----Hhhhc---cCCCCCCCCCHHHH
Confidence 999999999999999987665 9999999 77631 24679999999999
Q ss_pred HHHHHHcCccCCCcccCCCCCccccc--------------------cCcccceeecccCCc------ccccceeeEEEE-
Q psy4869 2293 WMYWINAGLVDGGDYGTHDVSMGRYI--------------------EGIGHAASVMGSSNP------EVNNFEKVIRLY- 2345 (2435)
Q Consensus 2293 ~~~~~~~Gi~~~~~y~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 2345 (2435)
|+|+++.||++|.+|||......+.. ..++.++...+|+.+ .|..|+++++..
T Consensus 165 ~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~~ 244 (310)
T 2o6x_A 165 YQYLKQFGLETESSYPYTAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQ 244 (310)
T ss_dssp HHHHTTSCBCBTTTSCCCSSCCCCCCCGGGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECCS
T ss_pred HHHHHHCCcCchhcCCCCCCCCCccCCCCCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecCC
Confidence 99999889999999999764322210 011112223355443 355566654431
Q ss_pred ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2346 SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2346 ~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.|+. ..++|||+|||||++ +|++|||||||||+.|||+|||||.||. |+|||++.+.++
T Consensus 245 ~c~~---~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~p 304 (310)
T 2o6x_A 245 TCSP---LRVNHAVLAVGYGTQ-GGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLP 304 (310)
T ss_dssp SCCT---TCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEEE
T ss_pred CCCC---CCCCEEEEEEEEecc-CCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeEE
Confidence 2432 356899999999975 7899999999999999999999999998 899999987643
No 25
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=100.00 E-value=1.9e-41 Score=407.82 Aligned_cols=200 Identities=34% Similarity=0.648 Sum_probs=155.0
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||++|++| |+|+||||||.||||| |||++++||++++|+
T Consensus 5 ~~lP~~~D~R~~w~~~-~~vt~VkdQg~CGSCW--------------------------------Afa~~~ale~~~~i~ 51 (266)
T 3cbj_A 5 LKLPASFDAREQWPQC-PTIKEIRDQGSCGSAW--------------------------------AFGAVEAISDRICIH 51 (266)
T ss_dssp CCCCSCEEHHHHSTTC-GGGGCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred CCCCccCcchhccCCC-CcCCCCCCCCCcchHH--------------------------------HHHHHHHHHHHHHHH
Confidence 4699999999999997 5799999999999999 999999999999998
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccC-------CCcccCCCC---------Ccc
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVD-------GGDYGTHDV---------SMG 2315 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~-------~~~y~~~~~---------~~~ 2315 (2435)
+++.....||+|+|+ ||... +.+.||+||++..||+|++++|+++ |.+|||... ...
T Consensus 52 ~~~~~~~~LS~q~lv----dC~~~---~~~~gC~GG~~~~a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~ 124 (266)
T 3cbj_A 52 TNAHVSVEVSAEDLL----TCCGS---MCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPP 124 (266)
T ss_dssp TTTSCCCCBCHHHHH----HHCGG---GGBCTTBCBCHHHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCC
T ss_pred hCCCCccccCHHHHH----hhccc---cCCCCCCCCCHHHHHHHHHHhCcCcCccccccccccCcccccccccccCCCCC
Confidence 865333449999999 77631 1246899999999999999999999 899999721 100
Q ss_pred c---------c---------------------------ccCcccceeecccCCc------ccccceeeEEEEecCCCcCc
Q psy4869 2316 R---------Y---------------------------IEGIGHAASVMGSSNP------EVNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2316 ~---------~---------------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 2353 (2435)
+ . ...++..+...+|+.+ .|..|+++++...|+ ..
T Consensus 125 C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~~~---~~ 201 (266)
T 3cbj_A 125 CTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTG---EM 201 (266)
T ss_dssp CCSCCCCCCCCCSCCTTCCSCTGGGCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSS---CE
T ss_pred CccccCCCccccccCCCCcceeeeeeeeeeeeEEeCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecCCC---Cc
Confidence 0 0 0001111222345443 345555554432222 22
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEeecCcc
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEAKLEGI 2415 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~~~~~~ 2415 (2435)
.++|||+|||||++ +|++|||||||||+.|||+|||||.||.|+|||++.+++++|++++.
T Consensus 202 ~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~~p~~~~~ 262 (266)
T 3cbj_A 202 MGGHAIRILGWGVE-NGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQY 262 (266)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCCCC-
T ss_pred cCCeEEEEEEeccc-CCceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEEEeeccch
Confidence 45899999999975 78999999999999999999999999999999999999999998753
No 26
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=100.00 E-value=3.3e-41 Score=403.34 Aligned_cols=193 Identities=37% Similarity=0.698 Sum_probs=150.0
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||++||+| ++|+||||||.||||| |||++++||++++|++
T Consensus 2 ~lP~s~D~R~~~~~~-~~vtpVkdQg~CGSCW--------------------------------AFaa~~ale~~~~i~~ 48 (254)
T 3qsd_A 2 EIPSSFDSRKKWPRC-KSIATIRDQSRCGSCW--------------------------------AFGAVEAMSDRSCIQS 48 (254)
T ss_dssp CCCSCEEHHHHCTTC-GGGGCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred CCCCcCccccccCCC-CccCCCCCcccCccHH--------------------------------HHHHHHHHHHHHHHHh
Confidence 589999999999998 7899999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcc-------cCCC---------CCccc
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDY-------GTHD---------VSMGR 2316 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y-------~~~~---------~~~~~ 2316 (2435)
++.....||+|+|+ ||... .+.||+||++..||+|++++||++|++| ||.. ....+
T Consensus 49 ~~~~~~~LSeQ~lv----dC~~~----~~~GC~GG~~~~a~~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C 120 (254)
T 3qsd_A 49 GGKQNVELSAVDLL----SCCES----CGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPC 120 (254)
T ss_dssp TTCCCCCBCHHHHH----HHCTT----SBCTTBCBCHHHHHHHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBC
T ss_pred CCCccccCCHHHHH----hhhcC----CCCCCCCCCHHHHHHHHHHcCCCcccccccCcCcCCcccccccccccCcCCCC
Confidence 74333349999999 66531 2368999999999999999999998888 9951 10000
Q ss_pred -------------------------------------cccCcccceeecccCCcc------cccceeeEEEEecCCCcCc
Q psy4869 2317 -------------------------------------YIEGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINP 2353 (2435)
Q Consensus 2317 -------------------------------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 2353 (2435)
....++..+...+|+.+. |..|+.+++...+. ..
T Consensus 121 ~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~~~---~~ 197 (254)
T 3qsd_A 121 GSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITG---ET 197 (254)
T ss_dssp CSCCCCCCCCCCCCCTTCCSCGGGGCBCCSEEEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCCSS---CE
T ss_pred cccccCCccccccccCCccceeeeeeeeeeeeEecCCcHHHHHHHHHHcCCEEEEEEeccccccccCCeeccCCC---CC
Confidence 000111122233454443 44455544322221 23
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeCcccccccceeEEEe
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGVNMCSIEDSVMAGEA 2410 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n~cgi~~~~~~~~~ 2410 (2435)
.++|||+|||||++ +|++|||||||||+.|||+|||||+||.|+||||+.+++++|
T Consensus 198 ~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~p 253 (254)
T 3qsd_A 198 LGGHAIRIIGWGVE-NKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRI 253 (254)
T ss_dssp EEEEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEEC
T ss_pred CCCeEEEEEEEeec-CCeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeecc
Confidence 45899999999975 789999999999999999999999999999999999999987
No 27
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=100.00 E-value=2e-40 Score=385.89 Aligned_cols=188 Identities=25% Similarity=0.461 Sum_probs=147.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vt~VkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (214)
T 1m6d_A 1 APPEWDWRS-----KGAVTKVKDQGMCGSCW--------------------------------AFSVTGNVEGQWFLNQG 43 (214)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~i~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 112 (214)
T 1m6d_A 44 TLLS--LSEQELL----DCDK-----MDKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYIQDSVE 112 (214)
T ss_dssp CCCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCGGGCCBCCSEEEE
T ss_pred CCcc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHhcCcccccCcCcCCCCCcCCCCcccceEEecCEEE
Confidence 7655 9999999 7764 24689999999999999986 8999999999754322110
Q ss_pred -----cCcccceeecccCCccc-----ccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCc
Q psy4869 2319 -----EGIGHAASVMGSSNPEV-----NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQG 2388 (2435)
Q Consensus 2319 -----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~G 2388 (2435)
..++..+...+|+.+.+ .+|+++++......+....++|||+|||||++ +|++|||||||||++|||+|
T Consensus 113 i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~G 191 (214)
T 1m6d_A 113 LSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQR-SDVPFWAIKNSWGTDWGEKG 191 (214)
T ss_dssp CCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTT
T ss_pred eChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEEEeec-CCcEEEEEEeCCCCCcccCc
Confidence 01112222345554443 45555543221000112246899999999975 78999999999999999999
Q ss_pred eEEEEeeCcccccccceeEEEe
Q psy4869 2389 LFKIRRGVNMCSIEDSVMAGEA 2410 (2435)
Q Consensus 2389 y~~i~r~~n~cgi~~~~~~~~~ 2410 (2435)
||||.||.|+|||++++.++++
T Consensus 192 y~~i~r~~n~Cgi~~~~~~~~~ 213 (214)
T 1m6d_A 192 YYYLHRGSGACGVNTMASSAVV 213 (214)
T ss_dssp EEEEESSSCGGGTTTTCEEEEC
T ss_pred EEEEEcCCCccccCceeEEEEe
Confidence 9999999999999999886653
No 28
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=100.00 E-value=7.3e-40 Score=384.16 Aligned_cols=190 Identities=26% Similarity=0.498 Sum_probs=150.4
Q ss_pred CCCccccCccCCCCCC-CcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2174 IPETFDAREEWPQCKD-VIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~-~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
||++||||+ +| +|+||||||.||||| |||++++||++++|++
T Consensus 1 lP~~~DwR~-----~~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 43 (220)
T 8pch_A 1 YPPSMDWRK-----KGNFVSPVKNQGSCGSCW--------------------------------TFSTTGALESAVAIAT 43 (220)
T ss_dssp CCSCEEHHH-----HSSCSCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCEecCc-----CCCcCCcccccCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 799999999 77 899999999999999 9999999999999999
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc--------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY-------------- 2317 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~-------------- 2317 (2435)
+..+. ||+|+|+ ||... +++.||+||++..||+|++++ |+++|++|||......+.
T Consensus 44 ~~~~~--lS~q~l~----dc~~~---~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~ 114 (220)
T 8pch_A 44 GKMLS--LAEQQLV----DCAQN---FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDKAIAFVKDVA 114 (220)
T ss_dssp CCCCC--BCHHHHH----HHGGG---GTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECEEEEE
T ss_pred CCCCC--CCHHHHh----hCcCc---cCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCCCcceEEeCCEE
Confidence 87766 9999999 77642 245789999999999999988 999999999976532211
Q ss_pred ------ccCcccceeecccCCcc------cccceeeEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2318 ------IEGIGHAASVMGSSNPE------VNNFEKVIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2318 ------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
+..++.++...+|+.+. |..|+.+++.. .|... ...++|||+|||||++ +|++|||||||||+.|
T Consensus 115 ~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~~~~~~-~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~W 192 (220)
T 8pch_A 115 NITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKT-PDKVNHAVLAVGYGEE-NGIPYWIVKNSWGPQW 192 (220)
T ss_dssp ECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCSSCCCS-TTTCCEEEEEEEEEEE-TTEEEEEEECSBCTTS
T ss_pred EeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCCcCCCC-CCcCCcEEEEEEEEcc-CCeeEEEEECCCCcCc
Confidence 01111222233554443 44555544322 12221 1257899999999965 7899999999999999
Q ss_pred CCCceEEEEeeCcccccccceeEEEee
Q psy4869 2385 GEQGLFKIRRGVNMCSIEDSVMAGEAK 2411 (2435)
Q Consensus 2385 G~~Gy~~i~r~~n~cgi~~~~~~~~~~ 2411 (2435)
||+|||||+||.|+|||++++.+++|.
T Consensus 193 Ge~Gy~~i~r~~n~cgi~~~~~~~~p~ 219 (220)
T 8pch_A 193 GMNGYFLIERGKNMCGLAACASYPIPL 219 (220)
T ss_dssp TBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred ccCCEEEEEcCCCccccCCCceeEeec
Confidence 999999999999999999999988775
No 29
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=100.00 E-value=1e-39 Score=380.34 Aligned_cols=183 Identities=26% Similarity=0.473 Sum_probs=144.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+.+
T Consensus 1 lP~~~Dwr~-----~g~vtpVkdQg~cGsCW--------------------------------Afa~~~ale~~~~i~~~ 43 (215)
T 3i06_A 1 APAAVDWRA-----RGAVTAVKDQGQCGSCW--------------------------------AFSAIGNVECQWFLAGH 43 (215)
T ss_dssp CCSEEEGGG-----GTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHTTS
T ss_pred CCCcccCCc-----CCCCCCCCCCCCCccHH--------------------------------HHHHHHHHHHHHHHhCC
Confidence 799999999 89999999999999999 99999999999999887
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc---CccCCCcccCCCCCc---ccc----------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA---GLVDGGDYGTHDVSM---GRY---------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~---Gi~~~~~y~~~~~~~---~~~---------- 2317 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||..... .+.
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~~~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i 112 (215)
T 3i06_A 44 PLTN--LSEQMLV----SCDK-----TDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATI 112 (215)
T ss_dssp CCCC--CCHHHHH----HHCS-----SSCGGGCCCHHHHHHHHHHHSTTEEEC-CCSCCCCTTSCCCCCCCSSCCEEEEE
T ss_pred CCCc--cCHHHHh----ccCC-----CCCCCCCCCHHHHHHHHHHhccccccccCccCCcCCCCCCCccccCCcccceEe
Confidence 7665 9999999 7764 25689999999999999986 799999999975321 110
Q ss_pred ---------ccCcccceeecccCCc-----ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCC
Q psy4869 2318 ---------IEGIGHAASVMGSSNP-----EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQG 2383 (2435)
Q Consensus 2318 ---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~ 2383 (2435)
...++..+...+|+.+ .|..|+++++. .|. ...++|||+|||||++ +|++|||||||||++
T Consensus 113 ~~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~-~~~---~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~ 187 (215)
T 3i06_A 113 TGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT-SCV---SEQLDHGVLLVGYNDS-AAVPYWIIKNSWTTQ 187 (215)
T ss_dssp EEEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC-SCC---CSCCCEEEEEEEEESS-SSSCEEEEECSBCTT
T ss_pred cceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCccc-CCC---CCccCcEEEEEEEecc-CCcEEEEEECCCCCC
Confidence 0011111222334332 45667766542 232 2345899999999964 789999999999999
Q ss_pred cCCCceEEEEeeCcccccccceeEEE
Q psy4869 2384 WGEQGLFKIRRGVNMCSIEDSVMAGE 2409 (2435)
Q Consensus 2384 WG~~Gy~~i~r~~n~cgi~~~~~~~~ 2409 (2435)
|||+|||||+||.|+|||++++++++
T Consensus 188 WGe~Gy~~i~rg~n~cgi~~~~~~~~ 213 (215)
T 3i06_A 188 WGEEGYIRIAKGSNQCLVKEEASSAV 213 (215)
T ss_dssp STBTTEEEEESSSCGGGTTSSEEEEE
T ss_pred cccCceEEEecCCCeecCCCceeEEe
Confidence 99999999999999999999988654
No 30
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=100.00 E-value=1.4e-39 Score=380.87 Aligned_cols=185 Identities=25% Similarity=0.464 Sum_probs=148.1
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~lE~~~~i~~~ 43 (220)
T 3p5u_A 1 LPDYVDWRS-----SGAVVDIKDQGQCGSAW--------------------------------AFSTIAAVEGINKIATG 43 (220)
T ss_dssp CCSCEETTT-----TTCSCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCc-----CCCCCCCCcCCCChhHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY----------I---- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~----------~---- 2318 (2435)
..+. ||+|+|+ ||... .++.||+||++..||+|++++ |+++|.+|||......+. +
T Consensus 44 ~~~~--LS~q~l~----dC~~~---~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~ 114 (220)
T 3p5u_A 44 DLIS--LSEQELV----DCGRT---QNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYE 114 (220)
T ss_dssp CCCC--BCHHHHH----HHCCC---SSCCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCHHHHTCCSBCCCEEE
T ss_pred CCCC--cCHhHcE----ECCCC---CCCCCCCCCCHHHHHHHHHHhCCcCcccccccccCCCCcCcCCCCCceEEEccEE
Confidence 8766 9999999 77742 236799999999999999987 999999999976432211 0
Q ss_pred -------cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2319 -------EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2319 -------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
..++.++ ..+|+.+ .|..|+.+++...|+. ..+|||+|||||++ +|++|||||||||+.|
T Consensus 115 ~v~~~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~W 188 (220)
T 3p5u_A 115 NVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTGPCGT----AVDHAVTIVGYGTE-GGIDYWIVKNSWGTTW 188 (220)
T ss_dssp ECCTTCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCCCCC----SCCEEEEEEEEEEE-TTEEEEEEECSBCTTS
T ss_pred EeCCCcHHHHHHHH-hcCCEEEEEecCchhhccccCceECCCCCC----ccceEEEEEEEecC-CCceEEEEECCCCCCc
Confidence 0011111 2344433 3556666655444443 35799999999964 7899999999999999
Q ss_pred CCCceEEEEeeCc---ccccccceeEEEe
Q psy4869 2385 GEQGLFKIRRGVN---MCSIEDSVMAGEA 2410 (2435)
Q Consensus 2385 G~~Gy~~i~r~~n---~cgi~~~~~~~~~ 2410 (2435)
||+|||||+||.| +|||++.+.+.++
T Consensus 189 Ge~Gy~~i~r~~~~~~~Cgi~~~~~~p~~ 217 (220)
T 3p5u_A 189 GEEGYMRIQRNVGGVGQCGIAKKASYPVK 217 (220)
T ss_dssp TBTTEEEEECCCCTTCGGGTTSSCEEEEC
T ss_pred ccCCEEEEECCCCCCCccCcccccceEEE
Confidence 9999999999987 9999999886554
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-36 Score=377.92 Aligned_cols=289 Identities=21% Similarity=0.369 Sum_probs=265.1
Q ss_pred eEecccCCcEEEEEECCC----CCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD----GQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd----g~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
..+++|.+.|++++|+|+ +.+|++|+.|+.|+|||+..... ....+.+|...|.+++|++++.++++++.|+.|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 356799999999999985 67999999999999999876543 3456889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI 509 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~ 509 (2435)
+||+++++.+..+..|...+.+++|+|++ .++++++.|+.|++||++.++....+ .+...+.+++|+|+|++|++|+.
T Consensus 106 lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~ 184 (321)
T 3ow8_A 106 LWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184 (321)
T ss_dssp EEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred EEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcC
Confidence 99999999999999999999999999988 56788999999999999998887766 46678999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 510 DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++ ..+++..+.+|. ..|.+++|
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~----~~~~~~~~~~h~----~~v~~~~~ 256 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ----HANLAGTLSGHA----SWVLNVAF 256 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETT----TCCEEEEECCCS----SCEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECC----CcceeEEEcCCC----CceEEEEE
Confidence 9999999999999999999999999999999999999999999999999998 356777888875 47899999
Q ss_pred cCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 590 SVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 590 spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+|++|++|+.|+.|++||+++++++..+.+|.+.|.+++|+|++++|++++.||.|++||.+
T Consensus 257 sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 257 CPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
No 32
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=100.00 E-value=6e-40 Score=384.21 Aligned_cols=185 Identities=26% Similarity=0.483 Sum_probs=141.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGSCW--------------------------------Afa~~~~le~~~~i~~~ 43 (222)
T 3u8e_A 1 APASIDWRK-----KGAVTSVKDQGACGMCW--------------------------------AFGATGAIEGIDAITTG 43 (222)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSCSSCT--------------------------------TTTHHHHHHHHHHHHHS
T ss_pred CCCcCcCCc-----CCCCCCcccCCCCccHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v 112 (222)
T 3u8e_A 44 RLIS--VSEQQIV----DCDTX-----XXXXXGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKPIAARIDGYTNV 112 (222)
T ss_dssp CCCC--BCHHHHH----HHCC-----------CCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCSCCCBCCCEEEEC
T ss_pred CCcc--cCHHHHH----hccCc-----ccccCCCCHHHHHHHHHHcCCccchhcCCCcccCCccccCCCCeEEEccEEEe
Confidence 8766 9999999 88752 5789999999999999999 9999999999754322110
Q ss_pred ----cCcccceeecccCCcc-------ccccee-eEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2319 ----EGIGHAASVMGSSNPE-------VNNFEK-VIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2319 ----~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
..++.++ ..+|+.+. |..|+. +++.. .|... ...++|||+|||||++++|++|||||||||+.||
T Consensus 113 ~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~~~~~~~~-~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WG 190 (222)
T 3u8e_A 113 PNSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDD-PATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWG 190 (222)
T ss_dssp CSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCCSSCBCCTTCCCC-GGGCCEEEEEEEEEESSTTCEEEEEECSBCTTST
T ss_pred CCcHHHHHHHH-hCCCEEEEEEecChhhhcEeCCceECCCcccCC-CCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcc
Confidence 1111112 23555444 444444 44322 23221 1246899999999976448999999999999999
Q ss_pred CCceEEEEeeCc----ccccccceeEE
Q psy4869 2386 EQGLFKIRRGVN----MCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~n----~cgi~~~~~~~ 2408 (2435)
|+|||||+||.| +|||++++++.
T Consensus 191 e~Gy~~i~r~~~~~~g~Cgi~~~~~~p 217 (222)
T 3u8e_A 191 IDGYILIRRNTNRPDGVCAIDAWGSYP 217 (222)
T ss_dssp BTTEEEEECSCSCTTCGGGTTSSCEEE
T ss_pred cCCEEEEEcCCCCCCCcCCccccceEE
Confidence 999999999987 99999998743
No 33
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=100.00 E-value=1.3e-39 Score=380.65 Aligned_cols=183 Identities=24% Similarity=0.475 Sum_probs=146.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 lP~~~Dwr~-----~~~v~pvkdQg~cGsCW--------------------------------Afa~~~~~e~~~~~~~~ 43 (215)
T 3kwz_A 1 APDSVDYRK-----KGYVTPVKNQGQCGSCW--------------------------------AFSSVGALEGQLKKKTG 43 (215)
T ss_dssp CTTCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCccCc-----CCCCCCcccCCCCcHHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+.
T Consensus 44 ~~~~--lS~q~l~----dc~~-----~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 112 (215)
T 3kwz_A 44 KLLN--LSPQNLV----DCVS-----ENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE 112 (215)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEE
T ss_pred CCcc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHhCCccccccCCCccCCCccccCCCCceeEecceEE
Confidence 7766 9999999 7764 35789999999999999988 999999999976532211
Q ss_pred -----ccCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
+..++.++...+|+.+ .|..|+.+++.. ..+....++|||+|||||++ +|++|||||||||++||
T Consensus 113 v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG 189 (215)
T 3kwz_A 113 IPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQ-KGNKHWIIKNSWGENWG 189 (215)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECC--CCCCCChhhCEEEEEEEecc-CCceEEEEECCcCcccc
Confidence 0111222223345443 345555544321 21212357899999999975 78999999999999999
Q ss_pred CCceEEEEeeC-cccccccceeE
Q psy4869 2386 EQGLFKIRRGV-NMCSIEDSVMA 2407 (2435)
Q Consensus 2386 ~~Gy~~i~r~~-n~cgi~~~~~~ 2407 (2435)
|+|||||+||. |+|||++++.+
T Consensus 190 ~~Gy~~i~r~~~n~Cgi~~~~~~ 212 (215)
T 3kwz_A 190 NKGYILMARNKNNACGIANLASF 212 (215)
T ss_dssp BTTEEEEESSSSSGGGTTSSCEE
T ss_pred cCCEEEEecCCCCccCcCCceee
Confidence 99999999998 99999998874
No 34
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=100.00 E-value=5.3e-40 Score=384.54 Aligned_cols=186 Identities=27% Similarity=0.498 Sum_probs=146.0
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (220)
T 2xu3_A 1 APRSVDWRE-----KGYVTPVKNQGQCGSCW--------------------------------AFSATGALEGQMFRKTG 43 (220)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCCcccCcccHHH--------------------------------HHHhHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHH-HcCccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWI-NAGLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~-~~Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||.. .+++.||+||++..||+|++ ++|+++|.+|||......+.
T Consensus 44 ~~~~--lS~q~l~----dC~~---~~g~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 114 (220)
T 2xu3_A 44 RLIS--LSEQNLV----DCSG---PQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVD 114 (220)
T ss_dssp CCCC--BCHHHHH----HHCT---TTTCCTTBCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCSEEEE
T ss_pred Ccee--cCHHHHH----hhcc---CCCCCCCCCCCHHHHHHHHHHhCCcccccccCCcccCcCccCCCCCcceeeeeEEE
Confidence 7655 9999999 7764 23467899999999999996 78999999999976432211
Q ss_pred ----ccCcccceeecccCCc-------ccccceeeEEEEe-cCCCcCcccceEEEEEEecc---CCCCcceEEEEccCCC
Q psy4869 2318 ----IEGIGHAASVMGSSNP-------EVNNFEKVIRLYS-CEGSINPRYIHSVKIIGWGK---SSQNEPYWLCTNSYNQ 2382 (2435)
Q Consensus 2318 ----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~~~~Hav~iVGyg~---~~~g~~yWiikNSWG~ 2382 (2435)
+..++.++...+|+.+ .|..|+.+++... |+. ..++|||+|||||+ +++|++|||||||||+
T Consensus 115 v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~~c~~---~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~ 191 (220)
T 2xu3_A 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSS---EDMDHGVLVVGYGFESTESDNNKYWLVKNSWGE 191 (220)
T ss_dssp CCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCTTCCS---SCCCEEEEEEEEEECCCSSSCCEEEEEECSBCT
T ss_pred eCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCCCCCC---CCCCeEEEEEEcCCccccCCCCcEEEEEeCCCC
Confidence 0111122223345443 3455555543221 332 35789999999993 3478999999999999
Q ss_pred CcCCCceEEEEeeC-cccccccceeEE
Q psy4869 2383 GWGEQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2383 ~WG~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
.|||+|||||.|+. |+|||++++..+
T Consensus 192 ~WG~~Gy~~i~~~~~n~Cgi~~~~~~p 218 (220)
T 2xu3_A 192 EWGMGGYVKMAKDRRNHCGIASAASYP 218 (220)
T ss_dssp TSTBTTEEEEECSSSSGGGTTTSCEEE
T ss_pred CcccCcEEEEecCCCCcCCccccceee
Confidence 99999999999998 899999998743
No 35
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=100.00 E-value=4.3e-40 Score=386.23 Aligned_cols=187 Identities=20% Similarity=0.355 Sum_probs=146.6
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||+ +|+|+||||||.||||| |||++++||++++++
T Consensus 8 ~~lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~lE~~~~~~ 50 (222)
T 3f5v_A 8 GNAPAEIDLRQ-----MRTVTPIRMQGGCGSAW--------------------------------AFSGVAATESAYLAY 50 (222)
T ss_dssp CCCCSCEEHHH-----HTCSCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcc-----CCCCCCCCCCCCChhHH--------------------------------HHHHHHHHHHHHHHH
Confidence 47999999999 89999999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccc--------------
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRY-------------- 2317 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~-------------- 2317 (2435)
++..+. ||+|+|+ ||.. +.||+||++..||+|++++|+++|.+|||......+.
T Consensus 51 ~~~~~~--lS~q~l~----dc~~------~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~ 118 (222)
T 3f5v_A 51 RQQSLD--LAEQELV----DCAS------QHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQ 118 (222)
T ss_dssp HCCCCC--BCHHHHH----HHTC------SSTTBCCCHHHHHHHHHHHCEEBGGGSCCCSSCCCCCCCSSCEECCSEEEE
T ss_pred cCCCCC--cCHHHHH----hCcC------CCCCCCCCHHHHHHHHHHcCCCchhhCCCcccCCCccCCcCcceeeccEEE
Confidence 887765 9999999 8874 4689999999999999999999999999976432211
Q ss_pred -----ccCcccceee-cccCCcccccc-eeeEEEEecCC-----CcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASV-MGSSNPEVNNF-EKVIRLYSCEG-----SINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
...++.++.. .+|+.+.+... ...|+.|+.+. .....++|||+|||||++ +|++|||||||||+.||
T Consensus 119 v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~~~~~~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG 197 (222)
T 3f5v_A 119 IYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNA-QGVDYWIVRNSWDTNWG 197 (222)
T ss_dssp CCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBCCCCSSSCEEEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceecCCCCCCccCcEEEEEEEecc-CCCEEEEEEcCCCCCcc
Confidence 0111122233 35554443221 01122222221 113457899999999975 78999999999999999
Q ss_pred CCceEEEEeeCcccccccceeEE
Q psy4869 2386 EQGLFKIRRGVNMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~n~cgi~~~~~~~ 2408 (2435)
|+|||||.||.|+|||+++++++
T Consensus 198 e~Gy~~i~r~~n~cgi~~~~~~p 220 (222)
T 3f5v_A 198 DNGYGYFAANIDLMMIEEYPYVV 220 (222)
T ss_dssp BTTEEEEECSSCGGGTTTSCEEE
T ss_pred cCCEEEEEcCCCeecCCCceeEE
Confidence 99999999999999999998854
No 36
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=100.00 E-value=3.2e-39 Score=379.05 Aligned_cols=184 Identities=26% Similarity=0.490 Sum_probs=146.4
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 1 ~lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 43 (229)
T 1s4v_A 1 TVPASVDWRK-----KGAVTSVKDQGQCGSCW--------------------------------AFSTIVAVEGINQIKT 43 (229)
T ss_dssp CCCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCCEeCCC-----CCCCCCCccCccchHHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 4899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc----------c--
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI----------E-- 2319 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~----------~-- 2319 (2435)
+..+. ||+|+|+ ||... .+.||+||++..||+|++++ |+++|.+|||......+.. .
T Consensus 44 g~~~~--lS~q~l~----dC~~~----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y 113 (229)
T 1s4v_A 44 NKLVS--LSEQELV----DCDTD----QNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGH 113 (229)
T ss_dssp SCCCC--BCHHHHH----HHCCS----SCCTTBCBCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCHHHHTCCCBCCCEE
T ss_pred CCCCC--cCHHHHH----hhCCC----CCCCCCCCCHHHHHHHHHHhCCccccccCCccCCCCCCCCCCCCCcEEEeeeE
Confidence 87665 9999999 77641 35789999999999999998 9999999999654322110 0
Q ss_pred ---------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCC
Q psy4869 2320 ---------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQG 2383 (2435)
Q Consensus 2320 ---------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~ 2383 (2435)
.++.++ ..+|+.+ .|..|+.+++...|+. .++|||+|||||++++|++|||||||||+.
T Consensus 114 ~~v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~g~~yWivkNSWG~~ 188 (229)
T 1s4v_A 114 ENVPENDENALLKAV-ANQPVSVAIDAGGSDFQFYSEGVFTGSCGT----ELDHGVAIVGYGTTIDGTKYWTVKNSWGPE 188 (229)
T ss_dssp EECCTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEECTTSCEEEEEECSBCTT
T ss_pred EEeCCccHHHHHHHH-hcCCEEEEEEeCcHHHhhCCCcEECCCCCC----CCCeEEEEEEeccccCCCCEEEEEeCCCCC
Confidence 011111 1234332 4556666655433443 358999999999865589999999999999
Q ss_pred cCCCceEEEEeeC----cccccccceeEE
Q psy4869 2384 WGEQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2384 WG~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|||+|||||.|+. |+|||+.++.+.
T Consensus 189 WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p 217 (229)
T 1s4v_A 189 WGEKGYIRMERGISDKEGLCGIAMEASYP 217 (229)
T ss_dssp STBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred ccCCcEEEEEcCCCCCCCcCcccccceee
Confidence 9999999999985 899999987743
No 37
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=100.00 E-value=6.4e-40 Score=384.06 Aligned_cols=186 Identities=25% Similarity=0.478 Sum_probs=146.5
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 2 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 44 (218)
T 3ovx_A 2 LPDSVDWRE-----KGCVTEVKYQGSCGACW--------------------------------AFSAVGALEAQLKLKTG 44 (218)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccc-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 899999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcccc---------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMGRY--------------- 2317 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~~~--------------- 2317 (2435)
..+. ||+|+|+ ||... .+++.||+||++..||+|+++ .|+++|.+|||......+.
T Consensus 45 ~~~~--lS~q~l~----~c~~~--~~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~ 116 (218)
T 3ovx_A 45 KLVS--LSAQNLV----DCSTE--KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQYDSKYRAATCSKYTE 116 (218)
T ss_dssp CCCC--BCHHHHH----HHSCG--GGTCCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCEEEE
T ss_pred Cccc--cCHHHhe----eccCC--cCCCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCCcccCCCccceeeeccEEE
Confidence 7766 9999999 77621 234679999999999999976 6999999999976432211
Q ss_pred -----ccCcccceeecccCCcc-------cccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2318 -----IEGIGHAASVMGSSNPE-------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2318 -----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
+..++.++...+|+.+. |..|+.+++.. ..+ ...++|||+|||||++ +|++|||||||||+.||
T Consensus 117 ~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~-~~~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG 192 (218)
T 3ovx_A 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSC-TQNVNHGVLVVGYGDL-NGKEYWLVKNSWGHNFG 192 (218)
T ss_dssp CCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECC--TTC-CSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecC--CCC-CcccCcEEEEEEEecc-CCceEEEEECCCCCccc
Confidence 01112222233454443 44555544322 111 3457899999999975 68999999999999999
Q ss_pred CCceEEEEeeC-cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV-NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~-n~cgi~~~~~~~ 2408 (2435)
|+|||||.||. |+|||++++.+.
T Consensus 193 ~~Gy~~i~~~~~n~cgi~~~~~~p 216 (218)
T 3ovx_A 193 EEGYIRMARNKGNHCGIASFPSYP 216 (218)
T ss_dssp BTTEEEEECSSSSGGGTTTSCEEE
T ss_pred cCCEEEEecCCCCcccccCceeee
Confidence 99999999998 999999988743
No 38
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=100.00 E-value=5.1e-39 Score=374.19 Aligned_cols=181 Identities=28% Similarity=0.461 Sum_probs=144.8
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (216)
T 1ppo_A 1 LPENVDWRK-----KGAVTPVRHQGSCGSCW--------------------------------AFSAVATVEGINKIRTG 43 (216)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCcCccHH--------------------------------HHHHHHHHHHHHHHccC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (216)
T 1ppo_A 44 KLVE--LSEQELV----DCER-----RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGR 112 (216)
T ss_dssp CCCC--BCHHHHH----HHCS-----SSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCCEEEE
T ss_pred Ccee--cCHHHHH----hccC-----CCCCCCCCCHHHHHHHHHHhCcCccccCCccCCCCCcCCCCCCCceEEeccEEE
Confidence 7665 9999999 7764 357899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||++||
T Consensus 113 v~~~~~~~i~~~l~-~GPV~v~~~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~ywivkNSWG~~WG 186 (216)
T 1ppo_A 113 VQPNNEGNLLNAIA-KQPVSVVVESKGRPFQLYKGGIFEGPCGT----KVDHAVTAVGYGKS-GGKGYILIKNSWGTAWG 186 (216)
T ss_dssp CCSSCHHHHHHHHH-HSCEEEEECCCSHHHHHCCSSEECCSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCSSST
T ss_pred ECCCCHHHHHHHHH-hCCEEEEEecCChhhhhcCCceECCCCCC----CCCEEEEEEEeecc-CCccEEEEEeCCCCCcc
Confidence 0111111 244433 3455666554333433 35899999999975 68999999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.+++++
T Consensus 187 ~~Gy~~i~~~~~~~~n~Cgi~~~~~~p 213 (216)
T 1ppo_A 187 EKGYIRIKRAPGNSPGVCGLYKSSYYP 213 (216)
T ss_dssp BTTEEEEECCCSSSSCGGGTTSCCEEE
T ss_pred cCcEEEEEcCCCCCCCcCccccceeeE
Confidence 99999999985 899999988743
No 39
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=100.00 E-value=4.4e-39 Score=382.00 Aligned_cols=189 Identities=25% Similarity=0.462 Sum_probs=148.3
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 3 ~lP~~~DwR~-----~g~vtpVkdQg~CGSCW--------------------------------AFaa~~alE~~~~i~~ 45 (262)
T 2fo5_A 3 DLPPSVDWRQ-----KGAVTGVKDQGKCGSCW--------------------------------AFSTVVSVEGINAIRT 45 (262)
T ss_dssp CCCSCEETTT-----TTCCCCCCBCTTSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCC-----CCCCCCCCCCCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 5999999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccccc------C-----
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYIE------G----- 2320 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~~------~----- 2320 (2435)
+..+. ||+|+|+ ||... .+.||+||++..||+|++++ |+++|++|||......+... .
T Consensus 46 g~~~~--LSeQ~lv----dC~~~----~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~~~~i 115 (262)
T 2fo5_A 46 GSLVS--LSEQELI----DCDTA----DNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHI 115 (262)
T ss_dssp SCCCC--BCHHHHH----HHCCS----SCCGGGCBCHHHHHHHHHHTTCEEBTTTSCCCSSCCCCCHHHHHHHCCCEECC
T ss_pred CCCCC--cCHHHHH----hhcCC----CCCCCCCCCHHHHHHHHHHcCCcCchhcCCCcCccCccCCcccccCCceeEEe
Confidence 87665 9999999 77642 35789999999999999998 99999999997643221100 0
Q ss_pred -------------cccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccC
Q psy4869 2321 -------------IGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSY 2380 (2435)
Q Consensus 2321 -------------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSW 2380 (2435)
++.++ ..+|+.+ .|..|+++++...|+. ..+|||+|||||++++|++||||||||
T Consensus 116 ~~y~~v~~~~e~~ik~al-~~GPV~v~i~~~~~~f~~Y~sGVy~~~c~~----~~~HaV~IVGyg~~~~G~~YWivkNSW 190 (262)
T 2fo5_A 116 DGHQDVPANSEEDLARAV-ANQPVSVAVEASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAEDGKAYWTVKNSW 190 (262)
T ss_dssp CEEEECCTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEECTTSCEEEEEECSB
T ss_pred ceEEEcCCchHHHHHHHH-HhCCEEEEEecChHHHhccCCceECCCCCC----cCCEEEEEEEEcccCCCceEEEEEeCC
Confidence 00111 1144433 3555666655434443 358999999999865689999999999
Q ss_pred CCCcCCCceEEEEeeC----cccccccceeEEEeecCcc
Q psy4869 2381 NQGWGEQGLFKIRRGV----NMCSIEDSVMAGEAKLEGI 2415 (2435)
Q Consensus 2381 G~~WG~~Gy~~i~r~~----n~cgi~~~~~~~~~~~~~~ 2415 (2435)
|++|||+|||||.|+. |+|||+..+. +|.+...
T Consensus 191 G~~WGe~GY~ri~r~~n~~~~~CgI~~~~~--~p~~~~~ 227 (262)
T 2fo5_A 191 GPSWGEQGYIRVEKDSGASGGLCGIAMEAS--YPVKTYS 227 (262)
T ss_dssp CTTSTBTTEEEEESSCSCTTCGGGTTTSCE--EEECCC-
T ss_pred CCCCCCCeEEEEEcCCCCCCCccceeeeee--EEEecCC
Confidence 9999999999999986 4599998876 5555443
No 40
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=100.00 E-value=4.4e-39 Score=375.29 Aligned_cols=181 Identities=24% Similarity=0.431 Sum_probs=144.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (218)
T 1yal_A 1 YPQSIDWRA-----KGAVTPVKNQGACGSCW--------------------------------AFSTIATVEGINKIVTG 43 (218)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCccchhHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCcccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYIE-------------- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~~-------------- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+...
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (218)
T 1yal_A 44 NLLE--LSEQELV----DCDK-----HSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKR 112 (218)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCBCBTTTSCCCSSCCCCCGGGCCSCCBCCSEEEE
T ss_pred Cccc--cCHHHHH----HhcC-----CCCCCCCCCHHHHHHHHHHcCCCccccccccCCCCCcccCcCCCceEEEeeEEE
Confidence 7665 9999999 7762 3578999999999999999999999999996543211100
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||+.||
T Consensus 113 v~~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WG 186 (218)
T 1yal_A 113 VPSNCETSFLGALA-NQPLSVLVEAGGKPFQLYKSGVFDGPCGT----KLDHAVTAVGYGTS-DGKNYIIIKNSWGPNWG 186 (218)
T ss_dssp CCSSBHHHHHHHHT-TSCEEEEECCCSHHHHTCCSSEECCSCCS----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTST
T ss_pred eCCCCHHHHHHHHH-hCCEEEEEeccchhccccCCceECCCCCC----CCCEEEEEEEeecc-CCccEEEEEeCCCCCcc
Confidence 0111111 244433 3555666654333433 36899999999975 68999999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.+++++
T Consensus 187 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 213 (218)
T 1yal_A 187 EKGYMRLKRQSGNSQGTCGVYKSSYYP 213 (218)
T ss_dssp BTTEEEEECCCSBSCCGGGTTSSCEEE
T ss_pred cCcEEEEECCCCCCCCccccccceeeE
Confidence 99999999985 899999988743
No 41
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=100.00 E-value=5.7e-39 Score=373.10 Aligned_cols=181 Identities=27% Similarity=0.478 Sum_probs=145.2
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~~VkdQg~cGsCW--------------------------------Afa~~~~~e~~~~i~~g 43 (215)
T 1iwd_A 1 LPSFVDWRS-----KGAVNSIKNQKQCGSCW--------------------------------AFSAVAAVESINKIRTG 43 (215)
T ss_dssp CCSCEEGGG-----GTCSCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCcccCCCCchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc--------------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI-------------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~-------------- 2318 (2435)
..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 44 ~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~i~~~~~v 112 (215)
T 1iwd_A 44 QLIS--LSEQELV----DCDTA-----SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRV 112 (215)
T ss_dssp CCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTCCCCBCCCEEEEC
T ss_pred Cccc--cChhHeE----ECcCC-----CCCCCCCCHHHHHHHHHHhCCcccccccCccCCCCCCCCCCCceEEeCcEEEe
Confidence 7665 9999999 77642 5789999999999999987 9999999999754321110
Q ss_pred -----cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2319 -----EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2319 -----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
..++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||++ +|++|||||||||++|||
T Consensus 113 ~~~~~~~ik~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe 186 (215)
T 1iwd_A 113 TRNNESALQSAV-ASQPVSVTVEAAGAPFQHYSSGIFTGPCGT----AQNHGVVIVGYGTQ-SGKNYWIVRNSWGQNWGN 186 (215)
T ss_dssp CTTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTB
T ss_pred CCCcHHHHHHHH-HhCCEEEEEecCCcchhhcCCceECCCCCC----cCCEEEEEEEEecc-CCccEEEEEeCCCCCcCC
Confidence 0011111 1244433 3556666654444442 46899999999975 789999999999999999
Q ss_pred CceEEEEeeC----cccccccceeEE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
+|||||.|+. |+|||+.++.+.
T Consensus 187 ~Gy~~i~~~~~~~~~~Cgi~~~~~~p 212 (215)
T 1iwd_A 187 QGYIWMERNVASSAGLCGIAQLPSYP 212 (215)
T ss_dssp TTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred CcEEEEEcCCCCCCCCCCccccceee
Confidence 9999999997 899999987743
No 42
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=100.00 E-value=4.8e-39 Score=375.79 Aligned_cols=182 Identities=24% Similarity=0.480 Sum_probs=145.2
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 2 ~lP~~~DwR~-----~~~v~~VkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~ 44 (221)
T 1cqd_A 2 DLPDSIDWRE-----NGAVVPVKNQGGCGSCW--------------------------------AFSTVAAVEGINQIVT 44 (221)
T ss_dssp -CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcCcCCC-----CCCcCCcccCCCCccHH--------------------------------HHHHHHHHHHHHHHhc
Confidence 5899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCccccc-------------
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRYI------------- 2318 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~~------------- 2318 (2435)
+..+. ||+|+|+ ||... +.||+||++..||+|++++ |+++|.+|||......+..
T Consensus 45 ~~~~~--lS~q~l~----dC~~~-----~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~ 113 (221)
T 1cqd_A 45 GDLIS--LSEQQLV----DCTTA-----NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGICNSTVNAPVVSIDSYE 113 (221)
T ss_dssp SCCCC--BCHHHHH----HHCTT-----SCTTBCCCHHHHHHHHHHHTSBCBTTTSCCCSSCCCCCSSSCCCSBCCSEEE
T ss_pred CCeee--eccceeE----ECCCC-----CCCCCCCCHHHHHHHHHHhCCccccccCCccCCCCCcCCCCCCceEEeccEE
Confidence 87765 9999999 77642 5789999999999999987 9999999999654321110
Q ss_pred -------cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCc
Q psy4869 2319 -------EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGW 2384 (2435)
Q Consensus 2319 -------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~W 2384 (2435)
..++.++ ..+|+.+ .|..|+.+++...|+. .++|||+|||||++ +|++|||||||||+.|
T Consensus 114 ~v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~~-~g~~yWivkNSWG~~W 187 (221)
T 1cqd_A 114 NVPSHNEQSLQKAV-ANQPVSVTMDAAGRDFQLYRSGIFTGSCNI----SANHALTVVGYGTE-NDKDFWIVKNSWGKNW 187 (221)
T ss_dssp ECCSSCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCCCCC----CCCEEEEEEEEEEE-TTEEEEEEECSBCTTS
T ss_pred EeCCchHHHHHHHH-HhCCEEEEEeccCcccccccCccccCCCCC----cCCeEEEEEEEccc-CCCcEEEEEeCCCCCc
Confidence 0011111 1244433 3556666655444442 46899999999975 7899999999999999
Q ss_pred CCCceEEEEeeC----cccccccceeEE
Q psy4869 2385 GEQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2385 G~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
||+|||||.|+. |+|||+.++.+.
T Consensus 188 Ge~Gy~~i~r~~~~~~~~Cgi~~~~~~p 215 (221)
T 1cqd_A 188 GESGYIRAERNIENPDGKCGITRFASYP 215 (221)
T ss_dssp TBTTEEEEECSCSSTTCGGGTTSSCEEE
T ss_pred ccCCEEEEEcCCCCCCcccceeeeeeEE
Confidence 999999999983 899999988743
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-35 Score=376.56 Aligned_cols=290 Identities=21% Similarity=0.392 Sum_probs=263.2
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.+...+.+|.+.|++++|+|+|++|++|+.||.|++||+.... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-cceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 3456799999999999999999999999999999999987653 456778899999999999999999999999999999
Q ss_pred ECCCC----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEE
Q psy4869 433 DLEKG----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 433 d~~tg----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sg 507 (2435)
|+.++ +....+.+|...+.++.|.+++ .+++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 99875 3567788999999999998876 4889999999999999999888777 478899999999999999999
Q ss_pred ecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRC 587 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v 587 (2435)
+.||.|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||++. .+.+..+..+. ....+.++
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~~~--~~~~v~~~ 276 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA----DQELMTYSHDN--IICGITSV 276 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCTT--CCSCEEEE
T ss_pred eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC----CcEEEEEccCC--cccceEEE
Confidence 9999999999999999999999999999999999999999999999999999984 44555554221 22468999
Q ss_pred EEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 588 AWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 588 ~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.||.|++||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999996
No 44
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4e-36 Score=391.67 Aligned_cols=288 Identities=26% Similarity=0.469 Sum_probs=268.9
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.++|++++|+|++.+|++|+.||.|++||+..+. ....+.+|.+.|.+++|++++++|++|+.|+.|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 45788999999999999999999999999999999987653 44678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
.+++.+..+.+|...|.++.|+|++ .++++|+.|+.|++||++++.++..+ .|...|.+++|+|++++|++|+.||.|
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v 258 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV 258 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999999999999987 46789999999999999999888777 577889999999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCCCEEEEEEcCC--------------------CCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 514 KMWDLRTNSVVQKLRGHSDTVTGLSLSPD--------------------GSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 514 ~lwD~~s~~~v~~l~~h~~~V~~i~~spd--------------------g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
++||+++++....+.+|...|.+++|+|+ |.+|++|+.|++|++||++ .+.++..+
T Consensus 259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~----~~~~~~~~ 334 (410)
T 1vyh_C 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS----TGMCLMTL 334 (410)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT----TTEEEEEE
T ss_pred EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC----CCceEEEE
Confidence 99999999999999999999999999996 6799999999999999998 46788888
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+|. ..|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|...|++++|+|++++|++|+.||+|++|++
T Consensus 335 ~~h~----~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 335 VGHD----NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ECCS----SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ECCC----CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 8875 47899999999999999999999999999999999999999999999999999999999999999999986
No 45
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=100.00 E-value=1.2e-38 Score=377.38 Aligned_cols=186 Identities=25% Similarity=0.430 Sum_probs=146.9
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
+||++||||+ +|+|+||||||.||||| |||++++||++++|++
T Consensus 1 ~lP~~~DwR~-----~g~vtpVkdQg~CGsCW--------------------------------Afa~~~~lE~~~~i~~ 43 (246)
T 2b1m_A 1 DAPESWDWSK-----KGVITKVKFQGQCGSGW--------------------------------AFSATGAIEAAHAIAT 43 (246)
T ss_dssp -CCSCEEGGG-----TTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCC-----CCCCCCcccCCCCchHH--------------------------------HHHHHHHHHHHHHHHc
Confidence 4899999999 89999999999999999 9999999999999998
Q ss_pred CCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc---------ccC--
Q psy4869 2253 KGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY---------IEG-- 2320 (2435)
Q Consensus 2253 ~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~---------~~~-- 2320 (2435)
+..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+. +..
T Consensus 44 g~~~~--LS~q~lv----dC~~-----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~y~ 112 (246)
T 2b1m_A 44 GNLVS--LSEQELI----DCVD-----ESEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYG 112 (246)
T ss_dssp SCCCC--BCHHHHH----HHCT-----TSBTTTBCCHHHHHHHHHHTTCBCBTTTSCCCSSCCCCCGGGCCCCBCCSEEE
T ss_pred CCCcc--cCHHHHH----hhcC-----CCCCCCCCCHHHHHHHHHHhCCcCccccccccCCCCcCcCCCCCCceeEcCcc
Confidence 87665 9999999 7763 35689999999999999998 999999999965432110 000
Q ss_pred ------------cccceee---cccCCc-----ccccceeeEEEE-ecCCCcCcccceEEEEEEeccCCCCcceEEEEcc
Q psy4869 2321 ------------IGHAASV---MGSSNP-----EVNNFEKVIRLY-SCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNS 2379 (2435)
Q Consensus 2321 ------------~~~~~~~---~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNS 2379 (2435)
++.++.. .+|+.+ .|..|+++++.. .|+... .++|||+|||||++ +|++|||||||
T Consensus 113 ~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~~~c~~~~--~~~HaV~iVGyg~~-~g~~yWivkNS 189 (246)
T 2b1m_A 113 VQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDGGNCSSPY--GINHFVLIVGYGSE-DGVDYWIAKNS 189 (246)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECCTTCCSSC--CCCEEEEEEEEEEE-TTEEEEEEECS
T ss_pred eeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecCCCCCCCC--cCceEEEEEEEecc-CCceEEEEEeC
Confidence 1111112 145443 456666665433 344321 26899999999976 78999999999
Q ss_pred CCCCcCCCceEEEEeeC----cccccccceeEEE
Q psy4869 2380 YNQGWGEQGLFKIRRGV----NMCSIEDSVMAGE 2409 (2435)
Q Consensus 2380 WG~~WG~~Gy~~i~r~~----n~cgi~~~~~~~~ 2409 (2435)
||++|||+|||||.|+. |+|||++.+++.+
T Consensus 190 WG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~ 223 (246)
T 2b1m_A 190 WGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223 (246)
T ss_dssp BCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEE
T ss_pred CCCcccCCcEEEEEcCCCCCCccccccceeeEEE
Confidence 99999999999999998 9999999877544
No 46
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=100.00 E-value=9.8e-39 Score=371.42 Aligned_cols=177 Identities=28% Similarity=0.483 Sum_probs=142.1
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++++++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 43 (213)
T 3ioq_A 1 IPTSIDWRQ-----KGAVTPVRNQGGCGSCW--------------------------------TFSSVAAVEGINKIVTG 43 (213)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccc-----CCCCCCCCcCCCChhHH--------------------------------HHHHHHHHHHHHHHHcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------cC---
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------EG--- 2320 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~~--- 2320 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|++|||......+.. ..
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~ 112 (213)
T 3ioq_A 44 QLLS--LSEQELL----DCER-----RSYGCRGGFPLYALQYVANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGR 112 (213)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCEEBGGGSCCCSSCCCCCGGGCCSCEECCCEEEE
T ss_pred CCcc--cCHHHhh----hhcC-----CCCCCCCCCHHHHHHHHHHcCCCchhccCcCCCCCCCCCCccCCceEEeccEEE
Confidence 8766 9999999 7774 356899999999999999999999999999764322211 00
Q ss_pred -------cccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCC
Q psy4869 2321 -------IGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGE 2386 (2435)
Q Consensus 2321 -------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~ 2386 (2435)
+...+...+|+.+ .|..|+++++...|+ ..++|||+|||||+ +|||||||||++|||
T Consensus 113 v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~~~~----~~~~HaV~iVGyg~-----~yWivkNSWG~~WGe 183 (213)
T 3ioq_A 113 VPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCG----TSIDHAVAAVGYGN-----DYILIKNSWGTGWGE 183 (213)
T ss_dssp CCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCSCC----SCCCEEEEEEEEET-----TEEEEECSBCTTSTB
T ss_pred eCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcCCCC----CccCceEEEEecCC-----CeEEEECCCCCCccc
Confidence 0001112244433 455566655443332 34679999999994 799999999999999
Q ss_pred CceEEEEeeC----cccccccceeE
Q psy4869 2387 QGLFKIRRGV----NMCSIEDSVMA 2407 (2435)
Q Consensus 2387 ~Gy~~i~r~~----n~cgi~~~~~~ 2407 (2435)
+|||||+||. |+|||++++.+
T Consensus 184 ~Gy~~i~r~~~~~~~~Cgi~~~~~~ 208 (213)
T 3ioq_A 184 GGYIRIKRGSGNPQGACGVLSDSVF 208 (213)
T ss_dssp TTEEEEESSCSSTTCGGGTTSCCEE
T ss_pred CCeEEEEcCCCCCCCcccccCcceE
Confidence 9999999997 89999998874
No 47
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=100.00 E-value=5e-39 Score=378.54 Aligned_cols=186 Identities=23% Similarity=0.465 Sum_probs=149.2
Q ss_pred CCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh
Q psy4869 2172 EAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ 2251 (2435)
Q Consensus 2172 ~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~ 2251 (2435)
.+||++||||+ +|+|+||||||.||||| |||++++||++++++
T Consensus 5 ~~lP~~~Dwr~-----~~~v~pVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~ 47 (224)
T 3f75_A 5 SELPAGVDWRS-----RGCVTPVKDQRDCGSCW--------------------------------AFSTTGALEGAHCAK 47 (224)
T ss_dssp GGSCSCEEHHH-----HTCCCCCCBCCSSSCHH--------------------------------HHHHHHHHHHHHHHH
T ss_pred cCCCCceeccc-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHh
Confidence 46999999999 89999999999999999 999999999999999
Q ss_pred cCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCccccc------------
Q psy4869 2252 SKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMGRYI------------ 2318 (2435)
Q Consensus 2252 ~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~~~~------------ 2318 (2435)
++..+. ||+|+|+ ||... .++.||+||++..||+|+++ +|+++|.+|||......+..
T Consensus 48 ~~~~~~--lS~q~l~----~c~~~---~~~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~ 118 (224)
T 3f75_A 48 TGKLVS--LSEQELM----DCSRA---EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGF 118 (224)
T ss_dssp HSCCCC--BCHHHHH----HHCGG---GTCCGGGCBCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCGGGSCCCBCCSEE
T ss_pred cCCCce--eCHHHHh----hcccC---CCCCCCCCCCHHHHHHHHHHhCCccccccCCCcCCCCCCCcCCCCceEEeccE
Confidence 887665 9999999 77642 24679999999999999998 79999999999754322110
Q ss_pred --------cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCC-CCcceEEEEccCCC
Q psy4869 2319 --------EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS-QNEPYWLCTNSYNQ 2382 (2435)
Q Consensus 2319 --------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~-~g~~yWiikNSWG~ 2382 (2435)
..++.++. .+|+.+ .|..|+.+++...|+ ..++|||+|||||.++ +|++|||||||||+
T Consensus 119 ~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~~~~----~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~ 193 (224)
T 3f75_A 119 KDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDASCG----TDLDHGVLLVGYGTDKESKKDFWIMKNSWGT 193 (224)
T ss_dssp EECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECCCCC----CCCCEEEEEEEEEEETTTTEEEEEEECSBCT
T ss_pred EEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECCCCC----CccCeEEEEEEEecccCCCCCEEEEECCcCc
Confidence 01111112 344433 456667665543343 4567999999999764 78999999999999
Q ss_pred CcCCCceEEEEeeC---cccccccceeEE
Q psy4869 2383 GWGEQGLFKIRRGV---NMCSIEDSVMAG 2408 (2435)
Q Consensus 2383 ~WG~~Gy~~i~r~~---n~cgi~~~~~~~ 2408 (2435)
.|||+|||||.||. |+|||++++++.
T Consensus 194 ~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p 222 (224)
T 3f75_A 194 GWGRDGYMYMAMHKGEEGQCGLLLDASFP 222 (224)
T ss_dssp TSTBTTEEEEESCSCTTCGGGTTSSCEEE
T ss_pred chhhCCEEEEEcCCCCCCcCcccCceeee
Confidence 99999999999998 999999998743
No 48
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=100.00 E-value=1.6e-39 Score=391.44 Aligned_cols=195 Identities=26% Similarity=0.458 Sum_probs=152.1
Q ss_pred CCCCCCCccccCccCCCCCCCcccccCCC---CCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhh
Q psy4869 2170 TDEAIPETFDAREEWPQCKDVIGKVWDQG---ACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSD 2246 (2435)
Q Consensus 2170 ~~~~lP~~~Dwr~~~~~~~~~v~~v~dQg---~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~ 2246 (2435)
...+||++||||++ ++.++|+|||||| .||||| |||++++||+
T Consensus 32 ~~~~lP~~~DwR~~--~~~~~vtpVkdQg~~~~CGSCW--------------------------------Afa~~~alE~ 77 (277)
T 1deu_A 32 SPADLPKSWDWRNV--DGVNYASITRNQHIPQYCGSCW--------------------------------AHASTSAMAD 77 (277)
T ss_dssp CGGGSCSCEETTSB--TTBCCCCCCCBTTCSSCCBCHH--------------------------------HHHHHHHHHH
T ss_pred ccccCCCceecccC--CCCCcCCccccCCCCCCCcchH--------------------------------HHHHHHHHHH
Confidence 34579999999994 2347899999999 999999 9999999999
Q ss_pred hhhhhcCCCc-CccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc-------
Q psy4869 2247 RICIQSKGQV-KPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI------- 2318 (2435)
Q Consensus 2247 ~~~~~~~~~~-~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~------- 2318 (2435)
+++|++++.. ...||+|+|+ ||.. +.||+||++..||+|++++||++|.+|||......+..
T Consensus 78 ~~~i~~~g~~~~~~LS~Q~lv----dC~~------~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~ 147 (277)
T 1deu_A 78 RINIKRKGAWPSTLLSVQNVI----DCGN------AGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTC 147 (277)
T ss_dssp HHHHHTTTCSSCCCBCHHHHH----HHSS------SEETBEECHHHHHHHHHHTCBCBGGGSCCCSSCCCCCHHHHSEEE
T ss_pred HHHHHhCCCCCCcccCHHHHH----hCcC------CCCCCCCCHHHHHHHHHHcCCCcCccCCCcCCCCCcccccccccc
Confidence 9999986542 2349999999 7764 25899999999999999999999999999765321110
Q ss_pred --------------------------cCcccceeecccCCcc------cccceeeEEEEecCCCcCcccceEEEEEEecc
Q psy4869 2319 --------------------------EGIGHAASVMGSSNPE------VNNFEKVIRLYSCEGSINPRYIHSVKIIGWGK 2366 (2435)
Q Consensus 2319 --------------------------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~ 2366 (2435)
..++..+...+|+.+. |..|+.+++...+ ....++|||+|||||+
T Consensus 148 ~~~~~c~~~~~~~~~~i~~y~~v~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~~~---~~~~~~HaV~iVGyg~ 224 (277)
T 1deu_A 148 NEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ---DTTYINHVVSVAGWGI 224 (277)
T ss_dssp EETTEEEECSSCCCBCEEEEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECBCC---SCCCCCEEEEEEEEEE
T ss_pred ccCcccccccCcceEEeceeEecCCHHHHHHHHHHcCCEEEEEecccccccCcCcEECCCC---CCCcCCeEEEEEEecc
Confidence 0011112233554443 4455555433222 1235789999999997
Q ss_pred CCCCcceEEEEccCCCCcCCCceEEEEeeCc--------ccccccceeEEEeec
Q psy4869 2367 SSQNEPYWLCTNSYNQGWGEQGLFKIRRGVN--------MCSIEDSVMAGEAKL 2412 (2435)
Q Consensus 2367 ~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~n--------~cgi~~~~~~~~~~~ 2412 (2435)
+ +|++|||||||||+.|||+|||||.||.| .||||+.+.+++|++
T Consensus 225 ~-~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~~~~~~p~~ 277 (277)
T 1deu_A 225 S-DGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV 277 (277)
T ss_dssp E-TTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred c-CCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceeccccEeecccC
Confidence 6 78999999999999999999999999998 999999999999974
No 49
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=100.00 E-value=2.6e-38 Score=367.17 Aligned_cols=177 Identities=28% Similarity=0.474 Sum_probs=141.6
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~v~pVkdQg~CGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (212)
T 2cio_A 1 IPEYVDWRQ-----KGAVTPVKNQGSCGSCW--------------------------------AFSAVVTIEGIIKIRTG 43 (212)
T ss_dssp CCSCEETTT-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcccCCC-----CCCCCCCccCCccchHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~~~~ 112 (212)
T 2cio_A 44 NLNQ--YSEQELL----DCDR-----RSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQ 112 (212)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHTCBCBTTTSCCCSSCCCCCTTTTCSCSBCCSEEEE
T ss_pred Cccc--cCHHHHH----HhCC-----CCCCCCCCCHHHHHHHHHHhCcCcccccCCcCCCCCcCCCCCCCceEEEeeEEE
Confidence 7665 9999999 7763 357899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++||
T Consensus 113 v~~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~~~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WG 182 (212)
T 2cio_A 113 VQPYNEGALLYSI-ANQPVSVVLEAAGKDFQLYRGGIFVGPCGN----KVDHAVAAVGYGP-----NYILIKNSWGTGWG 182 (212)
T ss_dssp CCSSCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCS----CCCEEEEEEEEET-----TEEEEECSBCTTST
T ss_pred eCCccHHHHHHHH-HhCCEEEEEeccCcchhhcCCceecCCCCC----CCCEEEEEEEecC-----CeEEEEeCCCCCcc
Confidence 011111 1244433 3555666654433442 4689999999995 79999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+.++.++
T Consensus 183 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 209 (212)
T 2cio_A 183 ENGYIRIKRGTGNSYGVCGLYTSSFYP 209 (212)
T ss_dssp BTTEEEEECSSSCTTCGGGTTSCCEEE
T ss_pred cCcEEEEEcCCCCCCCccCcccceeEE
Confidence 99999999996 899999988743
No 50
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=100.00 E-value=2.9e-38 Score=365.18 Aligned_cols=177 Identities=29% Similarity=0.545 Sum_probs=141.9
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~g 43 (208)
T 1o0e_A 1 LPEQIDWRK-----KGAVTPVKNQGSCGSCW--------------------------------AFSTVSTVESINQIRTG 43 (208)
T ss_dssp CCSCEEGGG-----GTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcCcCCC-----CCCCCCCccCCCCccHH--------------------------------HHHHHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999988
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHc-CccCCCcccCCCCCcccc-------c-------
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINA-GLVDGGDYGTHDVSMGRY-------I------- 2318 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~-Gi~~~~~y~~~~~~~~~~-------~------- 2318 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++ |+++|.+|||......+. +
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~i~~~~~v~ 112 (208)
T 1o0e_A 44 NLIS--LSEQELV----DCDK-----KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVP 112 (208)
T ss_dssp CCCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHTCBCBTTTSCCCSSCCCCCCCCCCBCCCEEEECC
T ss_pred Ccee--cCHHHhh----hhcC-----CCCCCCCCCHHHHHHHHHHhCCcCcccccCccCCCCcCCCCCceEEeCeEEEeC
Confidence 7665 9999999 7763 35789999999999999997 999999999965432111 0
Q ss_pred ----cCcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcCCC
Q psy4869 2319 ----EGIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQ 2387 (2435)
Q Consensus 2319 ----~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~ 2387 (2435)
..++.++ ..+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++|||+
T Consensus 113 ~~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~Gvy~~~c~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WGe~ 182 (208)
T 1o0e_A 113 FCNEXALKQAV-AVQPSTVAIDASSAQFQQYSSGIFSGPCGT----KLNHGVTIVGYQA-----NYWIVRNSWGRYWGEK 182 (208)
T ss_dssp TTCHHHHHHHH-HHSCEEEEECCCSHHHHTCCSSEECCCCCS----CCCEEEEEEEECS-----SEEEEECSBCTTSTBT
T ss_pred CCCHHHHHHHH-HhCCEEEEEEccCcccccccCceECCCCCC----cCCEEEEEEEeCC-----CeEEEEcCCCCcccCC
Confidence 0011111 1244433 4556666654434442 4689999999995 7999999999999999
Q ss_pred ceEEEEeeC--cccccccceeEE
Q psy4869 2388 GLFKIRRGV--NMCSIEDSVMAG 2408 (2435)
Q Consensus 2388 Gy~~i~r~~--n~cgi~~~~~~~ 2408 (2435)
|||||.|+. |+|||++++.++
T Consensus 183 Gy~~i~~~~~~~~Cgi~~~~~~p 205 (208)
T 1o0e_A 183 GYIRMLRVGGCGLCGIARLPYYP 205 (208)
T ss_dssp TEEEEECCSTTCGGGTTSSCEEE
T ss_pred cEEEEEcCCCCCcCCCcccceee
Confidence 999999997 999999987743
No 51
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-35 Score=384.62 Aligned_cols=289 Identities=29% Similarity=0.442 Sum_probs=263.6
Q ss_pred EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1076 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1076 ~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
..+.+|..+|++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.+.+.. +.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++.|+|++.+|++++.|
T Consensus 182 ~~~~~~------~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 182 FECIRT------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp SCEEEC------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CceeEE------EcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 765544 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccc
Q psy4869 1236 GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEE 1315 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1315 (2435)
+.|++||+++.+....+..+ ..
T Consensus 256 ~~v~vwd~~~~~~~~~~~~h----------------------------------------------------------~~ 277 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELREH----------------------------------------------------------RH 277 (410)
T ss_dssp SCEEEEETTTCCEEEEECCC----------------------------------------------------------SS
T ss_pred CeEEEEECCCCceeeEecCC----------------------------------------------------------Cc
Confidence 99999999887665544322 12
Q ss_pred cEEEEEecC--------------------CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEe
Q psy4869 1316 QVLCARVSP--------------------DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS 1375 (2435)
Q Consensus 1316 ~i~~ia~sp--------------------dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg 1375 (2435)
.+.+++|+| +|.+|++|+.||.|++||+.+++++..+.+|...|.+++|+|+|++|++|+
T Consensus 278 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 357 (410)
T 1vyh_C 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 357 (410)
T ss_dssp CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEe
Confidence 233444444 477899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1376 GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1376 ~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
.|+.|++||+.+++++..+.+|..+|++|+|+|++.+|++|+.||.|++|++.
T Consensus 358 ~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 358 DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999863
No 52
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=100.00 E-value=2.1e-38 Score=368.07 Aligned_cols=177 Identities=27% Similarity=0.461 Sum_probs=141.7
Q ss_pred CCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcC
Q psy4869 2174 IPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSK 2253 (2435)
Q Consensus 2174 lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~ 2253 (2435)
||++||||+ +|+|+||||||.||||| |||++++||++++|+++
T Consensus 1 lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~~le~~~~i~~~ 43 (214)
T 2bdz_A 1 YPESIDWRE-----KGAVTPVKNQNPCGSCW--------------------------------AFSTVATIEGINKIITG 43 (214)
T ss_dssp CCSCEETTT-----TTCCCCCCBCTTSBCHH--------------------------------HHHHHHHHHHHHHHHHS
T ss_pred CCCcEeCCC-----CCCCCCCccCCCCccHH--------------------------------HHHhHHHHHHHHHHhcC
Confidence 799999999 89999999999999999 99999999999999998
Q ss_pred CCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHHcCccCCCcccCCCCCccccc----------c----
Q psy4869 2254 GQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWINAGLVDGGDYGTHDVSMGRYI----------E---- 2319 (2435)
Q Consensus 2254 ~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~~~~~~~~~~~----------~---- 2319 (2435)
..+. ||+|+|+ ||.. .+.||+||++..||+|++++|+++|.+|||......+.. .
T Consensus 44 ~~~~--lS~q~l~----dC~~-----~~~gC~GG~~~~a~~y~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~~i~~y~~ 112 (214)
T 2bdz_A 44 QLIS--LSEQELL----DCER-----RSHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQGRCRAKDKKGPKVYITGYKY 112 (214)
T ss_dssp CBCC--BCHHHHH----HHCT-----TSCTTBCCCHHHHHHHHHHHCEEBTTTSCCCSSCCCCCTTTCCSCEECCCEEEE
T ss_pred Cccc--cCHHHHH----hhcC-----CCCCCCCCCHHHHHHHHHHhCCCccccCCCCCCCCCCCCCCCCCceeeecCEEE
Confidence 7765 9999999 7764 256899999999999999999999999999654321110 0
Q ss_pred -------CcccceeecccCCc-------ccccceeeEEEEecCCCcCcccceEEEEEEeccCCCCcceEEEEccCCCCcC
Q psy4869 2320 -------GIGHAASVMGSSNP-------EVNNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWG 2385 (2435)
Q Consensus 2320 -------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG 2385 (2435)
.++.++. .+|+.+ .|..|+++++...|+. .++|||+|||||+ +|||||||||++||
T Consensus 113 v~~~~~~~i~~~l~-~gPV~v~i~~~~~~f~~Y~~Giy~~~~~~----~~~HaV~iVGyg~-----~yWivkNSWG~~WG 182 (214)
T 2bdz_A 113 VPANDEISLIQAIA-NQPVSVVTDSRGRGFQFYKGGIYEGPCGT----NTDHAVTAVGYGK-----TYLLLKNSWGPNWG 182 (214)
T ss_dssp ECSSBHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCSCCS----CCCEEEEEEEECS-----SEEEEECSBCTTST
T ss_pred eCCCcHHHHHHHHH-hCCEEEEEeeChhHhhcccCceecCCCCC----CCCeEEEEEEcCC-----CeEEEEeCCCCCcc
Confidence 0111111 144433 3555666554444432 4689999999995 79999999999999
Q ss_pred CCceEEEEeeC----cccccccceeEE
Q psy4869 2386 EQGLFKIRRGV----NMCSIEDSVMAG 2408 (2435)
Q Consensus 2386 ~~Gy~~i~r~~----n~cgi~~~~~~~ 2408 (2435)
|+|||||.|+. |+|||+..+.+.
T Consensus 183 e~Gy~~i~~~~~~~~~~Cgi~~~~~~p 209 (214)
T 2bdz_A 183 EKGYIRIKRASGRSKGTCGVYTSSFFP 209 (214)
T ss_dssp BTTEEEEECCCSBSSCGGGTTSCEEEE
T ss_pred cCCEEEEEcCCCCCCCcccccccceEE
Confidence 99999999986 899999988743
No 53
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=100.00 E-value=2.5e-38 Score=374.97 Aligned_cols=184 Identities=23% Similarity=0.381 Sum_probs=145.3
Q ss_pred CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhh
Q psy4869 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250 (2435)
Q Consensus 2171 ~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~ 2250 (2435)
..+||++||||+ +|+|+||||||.||||| |||++++||++++|
T Consensus 17 ~~~lP~~~DwR~-----~~~vtpVkdQg~cGsCW--------------------------------Afa~~~alE~~~~i 59 (243)
T 3bwk_A 17 AKLDRIAYDWRL-----HGGVTPVKDQALCGSCW--------------------------------AFSSVGSVESQYAI 59 (243)
T ss_dssp CCCCCSCEEGGG-----TTCCCCCCBCCSSCCHH--------------------------------HHHHHHHHHHHHHH
T ss_pred cccCCCceecCc-----CCCCCCCccCCCCchHH--------------------------------HHHHHHHHHHHHHH
Confidence 456999999999 88999999999999999 99999999999999
Q ss_pred hcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcc-cccc---------
Q psy4869 2251 QSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMG-RYIE--------- 2319 (2435)
Q Consensus 2251 ~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~-~~~~--------- 2319 (2435)
+++..+. ||+|+|+ ||... +.||+||++..||+|+++ .|+++|.+|||...... +...
T Consensus 60 ~~~~~~~--lSeq~lv----dC~~~-----~~gC~GG~~~~a~~y~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~ 128 (243)
T 3bwk_A 60 RKKALFL--FSEQELV----DCSVK-----NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIK 128 (243)
T ss_dssp HHCSCCC--BCHHHHH----HHCTT-----SCGGGCCCHHHHHHHHHHTTSBCBTTTSCCCTTSCCCCCGGGCSSCBCCC
T ss_pred hcCCCcc--cCHHHHH----HhcCC-----CCCCCCCCHHHHHHHHHHhCCcccccccCCcCCCCCcCCCCCCccceeee
Confidence 9887765 9999999 77642 568999999999999998 69999999999754322 2110
Q ss_pred -----------CcccceeecccCCccc------ccceeeEEEEecCCCcCcccceEEEEEEeccCC---------CCcce
Q psy4869 2320 -----------GIGHAASVMGSSNPEV------NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS---------QNEPY 2373 (2435)
Q Consensus 2320 -----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~---------~g~~y 2373 (2435)
.++.+ . +|+.+.+ ..|+++++...|+. .++|||+|||||+++ .|++|
T Consensus 129 ~~~~v~~~~~~~ik~~--l-GPV~v~i~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~~~~~~~~~~g~~y 201 (243)
T 3bwk_A 129 SYVSIPDDKFKEALRY--L-GPISISIAASDDFAFYRGGFYDGECGA----APNHAVILVGYGMKDIYNEDTGRMEKFYY 201 (243)
T ss_dssp EEEECCTTCHHHHHHH--T-CCEEEEECCCHHHHTCCSSSCCCCCCS----SCCEEEEEEEEEEEEEECTTTCSEEEEEE
T ss_pred eEEEeCCCCHHHHHHh--h-CCEEEEEecChhHHhcCCceecCCCCC----cCCeEEEEEEecCccccccccccCCCCCE
Confidence 01111 1 5554444 34444332222322 268999999999763 27899
Q ss_pred EEEEccCCCCcCCCceEEEEeeCcc----cccccceeEEE
Q psy4869 2374 WLCTNSYNQGWGEQGLFKIRRGVNM----CSIEDSVMAGE 2409 (2435)
Q Consensus 2374 WiikNSWG~~WG~~Gy~~i~r~~n~----cgi~~~~~~~~ 2409 (2435)
||||||||+.|||+|||||.|+.|. |||++++++++
T Consensus 202 WivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~ 241 (243)
T 3bwk_A 202 YIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241 (243)
T ss_dssp EEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEE
T ss_pred EEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEe
Confidence 9999999999999999999999877 99999988544
No 54
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=100.00 E-value=2.8e-38 Score=373.97 Aligned_cols=184 Identities=24% Similarity=0.424 Sum_probs=145.5
Q ss_pred CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhh
Q psy4869 2171 DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICI 2250 (2435)
Q Consensus 2171 ~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~ 2250 (2435)
..+||++||||+ +|+|+||||||.||||| |||++++||++++|
T Consensus 15 ~~~lP~~~DwR~-----~~~vtpVkdQg~CGsCW--------------------------------AFaa~~alE~~~~i 57 (241)
T 2oul_A 15 ENFDHAAYDWRL-----HSGVTPVKDQKNCGSCW--------------------------------AFSSIGSVESQYAI 57 (241)
T ss_dssp CCCCSSCEEGGG-----TTCCCCCCBCCSSBCHH--------------------------------HHHHHHHHHHHHHH
T ss_pred cccCCCccccCc-----CCCCCCCccCccchHHH--------------------------------HHHHHHHHHHHHHH
Confidence 346999999999 88999999999999999 99999999999999
Q ss_pred hcCCCcCccCCccceecccCCCCCCCCCCCCCCCCCCChhhHHHHHHH-cCccCCCcccCCCCCcc-ccc---------c
Q psy4869 2251 QSKGQVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSAAAWMYWIN-AGLVDGGDYGTHDVSMG-RYI---------E 2319 (2435)
Q Consensus 2251 ~~~~~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~~a~~~~~~-~Gi~~~~~y~~~~~~~~-~~~---------~ 2319 (2435)
+++..+. ||+|+|+ ||... +.||+||++..||+|+++ +|+++|.+|||...... +.. .
T Consensus 58 ~~~~~~~--lSeq~l~----dC~~~-----~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~i~ 126 (241)
T 2oul_A 58 RKNKLIT--LSEQELV----DCSFK-----NYGCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIK 126 (241)
T ss_dssp HHCCCCC--BCHHHHH----HHCTT-----SCTTBCBCHHHHHHHHHHTTSBCBTTSSCCCTTSCCCCCTTSSSCCBCCS
T ss_pred hcCCCcc--cCHHHHH----hhcCC-----CCCCCCCCHHHHHHHHHHhCCcCccccCCCcCCCCCcCCCCCCccceeee
Confidence 9987765 9999999 77642 578999999999999998 69999999999654322 110 0
Q ss_pred -----------CcccceeecccCCccc------ccceeeEEEEecCCCcCcccceEEEEEEeccCC---------CCcce
Q psy4869 2320 -----------GIGHAASVMGSSNPEV------NNFEKVIRLYSCEGSINPRYIHSVKIIGWGKSS---------QNEPY 2373 (2435)
Q Consensus 2320 -----------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Hav~iVGyg~~~---------~g~~y 2373 (2435)
.++.+ . +|+.+.+ ..|+++++...|+. .++|||+|||||++. .|++|
T Consensus 127 ~~~~v~~~~~~~ik~~--l-GPV~v~i~~~~~f~~Y~~Giy~~~c~~----~~~HaV~iVGyg~~~~~~~~~~~~~g~~y 199 (241)
T 2oul_A 127 NYLSVPDNKLKEALRF--L-GPISISVAVSDDFAFYKEGIFDGECGD----QLNHAVMLVGFGMKEIVNPLTKKGEKHYY 199 (241)
T ss_dssp EEEECCTTCHHHHHHH--T-CCEEEEECBCHHHHTCCSSBCCSCBCS----SCCEEEEEEEEEEEEEECTTTCSEEEEEE
T ss_pred eEEEeCCCCHHHHHHh--h-CCEEEEEecCcchhhcCCcEEcCcCCC----CCCEEEEEEEeccccccccccccCCCCCE
Confidence 01111 1 5554443 34444433222332 268999999999753 27899
Q ss_pred EEEEccCCCCcCCCceEEEEeeCcc----cccccceeEEE
Q psy4869 2374 WLCTNSYNQGWGEQGLFKIRRGVNM----CSIEDSVMAGE 2409 (2435)
Q Consensus 2374 WiikNSWG~~WG~~Gy~~i~r~~n~----cgi~~~~~~~~ 2409 (2435)
||||||||+.|||+|||||.|+.|. |||++++.+++
T Consensus 200 WivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~ 239 (241)
T 2oul_A 200 YIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239 (241)
T ss_dssp EEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEE
T ss_pred EEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEe
Confidence 9999999999999999999999877 99999988544
No 55
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7e-35 Score=363.77 Aligned_cols=293 Identities=22% Similarity=0.434 Sum_probs=256.9
Q ss_pred CeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 108 DVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
+...+|.+|.+.|++++|+|+|++||+|+.||.|+|||+.++..+..+.+|..+|.+++|+|+ +.+|++|+.|++|++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRV 81 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEE
Confidence 457789999999999999999999999999999999999999999999999999999999864 568999999999999
Q ss_pred EeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 188 WDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 188 Wd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
||+++++++..+.+|.+.|.+++|+|++++|++|+.|++|++||++.+..
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------------------------------ 131 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA------------------------------ 131 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTE------------------------------
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcc------------------------------
Confidence 99999999999999999999999999999999999999999999863210
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
T Consensus 132 -------------------------------------------------------------------------------- 131 (304)
T 2ynn_A 132 -------------------------------------------------------------------------------- 131 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc--CCCEEEEEe
Q psy4869 348 TSNLFAPIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST--DGCHIFTCS 424 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s 424 (2435)
....+.+|...|.+++|+| ++.+|++|+.||.|++||+...........+|...|..+.|++ ++.+|++++
T Consensus 132 ------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s 205 (304)
T 2ynn_A 132 ------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (304)
T ss_dssp ------EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEE
T ss_pred ------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEc
Confidence 0123568999999999999 6799999999999999999765555555567788999999987 678999999
Q ss_pred CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
.|+.|++||+++++.+..+.+|.. .|.+++|+|++++|
T Consensus 206 ~D~~i~iWd~~~~~~~~~~~~h~~------------------------------------------~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 206 DDLTIKIWDYQTKSCVATLEGHMS------------------------------------------NVSFAVFHPTLPII 243 (304)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSS------------------------------------------CEEEEEECSSSSEE
T ss_pred CCCeEEEEeCCCCccceeeCCCCC------------------------------------------CEEEEEECCCCCEE
Confidence 999999999988887777766543 45677899999999
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCC--EEEEEECCCcEEEEEcC
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGS--YILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~--~las~s~Dg~I~lWdl~ 561 (2435)
++|+.||.|++||.++++.+..+..|...+.+++|+|++. ++++|+ |..+.+|++.
T Consensus 244 ~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred EEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 9999999999999999999999999999999999999875 456655 5567788875
No 56
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.8e-35 Score=381.55 Aligned_cols=295 Identities=23% Similarity=0.444 Sum_probs=262.9
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
....+.||.+.|++++|+|+|++|++|+.||.|+|||+.... ....+..|...|.+++|+|++++|++++.|+.+++||
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~-~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ-KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-cceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 346789999999999999999999999999999999987653 4567889999999999999999999999999999999
Q ss_pred CCCCc-------eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee------cCcccEEEEEECC-
Q psy4869 434 LEKGQ-------RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------NNTYQVTSVAFND- 499 (2435)
Q Consensus 434 ~~tg~-------~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~------~~~~~v~sv~~sp- 499 (2435)
+.+.. ....+.+|...+.++.|.|+++..|++|+.|++|++||+++++.+..+ .|...|.+++|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 86532 345678999999999999998888999999999999999999887665 3667899999987
Q ss_pred CCCEEEEEecCCeEEEEECC-CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc
Q psy4869 500 TAECVLTGGIDNDIKMWDLR-TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH 578 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~-s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~ 578 (2435)
++++|++|+.||.|++||++ .++.+..+.+|.+.|.+++|+|+|++|++++.|++|++||++. ++++..+..+..
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~----~~~~~~~~~~~~ 292 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT----GHQLQVYNREPD 292 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT----TEEEEEECCCCS
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC----CcEEEEeccccc
Confidence 88999999999999999998 5578889999999999999999999999999999999999984 566666665432
Q ss_pred c---cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe----cCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 579 N---FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL----PGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 579 ~---~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l----~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
. ....+.+++|+|+|++|++|+.||.|++||...++.+..+ .+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus 293 ~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 293 RNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence 1 1124789999999999999999999999999999988877 68999999999999999999999999999999
Q ss_pred CC
Q psy4869 652 SP 653 (2435)
Q Consensus 652 ~~ 653 (2435)
+.
T Consensus 373 ~~ 374 (380)
T 3iz6_a 373 FS 374 (380)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.4e-34 Score=369.18 Aligned_cols=291 Identities=24% Similarity=0.412 Sum_probs=261.1
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.....+.||.+.|++++|+|++++|++|+.||.|++||..... ....+..|...|.+++|+|++..|++++.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-KEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-cceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 3456789999999999999999999999999999999987543 345677899999999999999999999999999999
Q ss_pred ECCCC------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC--CCCE
Q psy4869 433 DLEKG------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND--TAEC 503 (2435)
Q Consensus 433 d~~tg------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp--~g~~ 503 (2435)
++... .....+.+|...|.++.|.+++ ..+++++.|++|++||+++++.+..+ .|...|.+++|+| +|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 98643 3456778899999999999987 46779999999999999999988777 4778899999987 5789
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++++.|++|++||++. .+.+..+..+.. ...
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~----~~~~~~~~~~~~--~~~ 286 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA----DREVAIYSKESI--IFG 286 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----TEEEEEECCTTC--CSC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC----CcEEEEEcCCCc--ccc
Confidence 99999999999999999999999999999999999999999999999999999999984 455555544322 236
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
+.+++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.||+|++|+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 78999999999999999999999999999999999999999999999999999999999999999996
No 58
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=363.67 Aligned_cols=291 Identities=25% Similarity=0.362 Sum_probs=263.3
Q ss_pred EEEEEecCCcCEEEEEEcCC----CCEEEEEECCCcEEEEEccCCce--eEEEeccCCCEEEEEEccCCCEEEEEeCCCc
Q psy4869 1074 FFISLYGHKLPVLSLDMSYD----STLIATGSGDRTVKVWGLDYGDC--HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1147 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spd----g~~L~Sgs~Dg~I~vWd~~t~~~--~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~ 1147 (2435)
....+.+|...|.+++|+++ +.+|++|+.|+.|++|++..++. ...+.+|...|.+++|++++.++++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 34556789999999999874 57999999999999999987753 4567899999999999999999999999999
Q ss_pred EEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCC
Q psy4869 1148 VKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1148 V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~ 1227 (2435)
|++||+.+++.+..+ ..+...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+++
T Consensus 104 i~lWd~~~~~~~~~~------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 104 IRLWDLENGKQIKSI------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177 (321)
T ss_dssp EEEEETTTTEEEEEE------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS
T ss_pred EEEEECCCCCEEEEE------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC
Confidence 999999998766655 36788899999999999999999999999999999999889999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
+|++++.||.|++||+++.+.+..+.
T Consensus 178 ~lasg~~dg~i~iwd~~~~~~~~~~~------------------------------------------------------ 203 (321)
T 3ow8_A 178 YLASGAIDGIINIFDIATGKLLHTLE------------------------------------------------------ 203 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC------------------------------------------------------
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc------------------------------------------------------
Confidence 99999999999999998765543321
Q ss_pred cccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1308 TRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.+...|.+++|+|++++|++|+.||.|++||+..++....+.+|...|.+++|+|++++|++|+.|+.|++||+.+
T Consensus 204 ----~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 204 ----GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp ----CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ----ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Confidence 1234678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
++++..+.+|...|++|+|+|++.+|++++.||.|+|||..
T Consensus 280 ~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999963
No 59
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-34 Score=363.34 Aligned_cols=294 Identities=20% Similarity=0.276 Sum_probs=264.5
Q ss_pred CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q psy4869 1072 FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1151 (2435)
Q Consensus 1072 ~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iw 1151 (2435)
.+....+.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1152 DADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1152 D~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
|+.+...... ....+.+|...|.++.|++++ .+++++.|+.|++||+++++.+..+.+|.+.|.+++|+|++++|++
T Consensus 125 ~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVR--VSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCE--EEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcce--eEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9987543221 123456899999999999876 5889999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
|+.|+.|++||+++...+..+.
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~---------------------------------------------------------- 223 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFT---------------------------------------------------------- 223 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEEC----------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCeeEEEEc----------------------------------------------------------
Confidence 9999999999998765433221
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~--h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
.+...|.+++|+|++++|++|+.||.|++||+..++.+..+.. +...|.+++|+|+|++|++|+.|+.|++||+.+++
T Consensus 224 ~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 1245689999999999999999999999999999888777653 34579999999999999999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
.+..+.+|..+|++|+|+|++.+|+|||.||.|+|||
T Consensus 304 ~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 304 RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999999999999999999999999999999997
No 60
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-35 Score=379.48 Aligned_cols=315 Identities=20% Similarity=0.373 Sum_probs=269.3
Q ss_pred EEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEE
Q psy4869 99 LKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVS 178 (2435)
Q Consensus 99 i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S 178 (2435)
+..|+........+|.||.+.|++++|+|+|++||||+.|++|+|||..+.+....+.+|...|.+++|+| ++.+|++
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~--~g~~las 125 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAP--NGQSVAC 125 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECT--TSSEEEE
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECC--CCCEEEE
Confidence 34566667778889999999999999999999999999999999999999999999999999999999985 5678999
Q ss_pred EeCCCcEEEEeccCCc-------cccccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhc
Q psy4869 179 SAKDTFVKIWDADTGD-------CFKTMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQL 250 (2435)
Q Consensus 179 ~s~Dg~I~iWd~~tg~-------~~~~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~ 250 (2435)
|+.|+.|++||+.++. ....+.+|.+.|.++.|.|++ ..|++|+.|++|++||+++++.+..
T Consensus 126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~---------- 195 (380)
T 3iz6_a 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISI---------- 195 (380)
T ss_dssp CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEE----------
T ss_pred eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEE----------
Confidence 9999999999987543 345678999999999999974 5699999999999999986421100
Q ss_pred ceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEE
Q psy4869 251 NQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVY 330 (2435)
Q Consensus 251 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~ 330 (2435)
+
T Consensus 196 -------------------------------------------------------------------------------~ 196 (380)
T 3iz6_a 196 -------------------------------------------------------------------------------F 196 (380)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred -------------------------------------------------------------------------------e
Confidence 0
Q ss_pred eCccceeeeeecccccCccccccceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 331 DREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 331 d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
.. ....+|...|.++.|++ ++++|++|+.||.|++||++........+.+|.+.|.
T Consensus 197 ~~-----------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~ 253 (380)
T 3iz6_a 197 GS-----------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN 253 (380)
T ss_dssp CC-----------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC
T ss_pred ec-----------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE
Confidence 00 01237889999999987 8899999999999999999855556678899999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc
Q psy4869 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT 489 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~ 489 (2435)
+++|+|++++|++++.|+.|++||+++++.+..+..+.... ..+.
T Consensus 254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-----------------------------------~~~~ 298 (380)
T 3iz6_a 254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-----------------------------------DNEL 298 (380)
T ss_dssp EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-----------------------------------CCSS
T ss_pred EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-----------------------------------cccc
Confidence 99999999999999999999999999988877665442110 0012
Q ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEE----ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKL----RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l----~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
..+.+++|+|+|++|++|+.||.|++||+..++.+..+ .+|.+.|.+++|+|||++|++|+.|++|+||++..
T Consensus 299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 24778999999999999999999999999999998887 68999999999999999999999999999999873
No 61
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=375.00 Aligned_cols=357 Identities=16% Similarity=0.230 Sum_probs=291.2
Q ss_pred CcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEEEEc----CCCCCccccchhhhhhhcceeeccc
Q psy4869 183 TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKVWNV----RDRSDIDTEDKDKLSEQLNQLLLSE 257 (2435)
Q Consensus 183 g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~vwdl----~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (2435)
..+.+||++..........|.+.|.+++|+|+++ +|++++.|+.|++||+ .+++.+-
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------ 86 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYW------------------ 86 (425)
T ss_dssp ---------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CE------------------
T ss_pred cccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccc------------------
Confidence 3456888876655555556779999999999999 9999999999999998 5432100
Q ss_pred CCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCcccee
Q psy4869 258 DEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYK 337 (2435)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~ 337 (2435)
.+.. . .. .
T Consensus 87 --------~~~~--~----------------~~---------------------------------------~------- 94 (425)
T 1r5m_A 87 --------KLTI--I----------------AE---------------------------------------L------- 94 (425)
T ss_dssp --------EEEE--E----------------EE---------------------------------------E-------
T ss_pred --------cccc--c----------------cc---------------------------------------c-------
Confidence 0000 0 00 0
Q ss_pred eeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC
Q psy4869 338 VQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG 417 (2435)
Q Consensus 338 ~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg 417 (2435)
.. .+.......+|.+.|++++|+|+|++|++|+.||.|++||... .....+.+|...|.+++|+|++
T Consensus 95 -~~----------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 95 -RH----------PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--ALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp -EC----------CCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCCSCEEEEEECTTS
T ss_pred -cc----------cccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CeeeeccCCCccEEEEEECCCC
Confidence 00 0000012346889999999999999999999999999999443 4556788999999999999999
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEeccCcc---------------ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTF---------------VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ 482 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~---------------v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~ 482 (2435)
++|++++.|+.|++||+.+++.+..+..+... +.++.|.+++ .+++++.|+.|++||++.++.
T Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 162 THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSC
T ss_pred CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCce
Confidence 99999999999999999999999999888776 8899998875 578899999999999999888
Q ss_pred eEee-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 483 AVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 483 ~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
...+ .+...|.+++|+|++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++ +|++++.|+.|++||++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~ 318 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK 318 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence 7776 577899999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc--------------------EEEEecC
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR--------------------IAYKLPG 621 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~--------------------~~~~l~~ 621 (2435)
..+++..+..|. ..+..++|+|++++|++++.||.|++||+.+++ ++..+.+
T Consensus 319 ----~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (425)
T 1r5m_A 319 ----QNTLLALSIVDG----VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS 390 (425)
T ss_dssp ----TTEEEEEEECTT----CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECC
T ss_pred ----CCcEeEecccCC----ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcC
Confidence 356777777664 378999999999999999999999999999888 8999999
Q ss_pred CCC--CeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 622 HNG--SVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 622 h~~--~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 391 SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 977 99999999999999999999999999985
No 62
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.9e-34 Score=357.36 Aligned_cols=288 Identities=22% Similarity=0.410 Sum_probs=256.0
Q ss_pred eeEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTL 429 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I 429 (2435)
...+.||.+.|++++|+|++ ++|++|+.|+.|++||+... ...+..+.+|...|.+++|++++++|++++.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 35788999999999999965 89999999999999998632 23456789999999999999999999999999999
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCC------CCE
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDT------AEC 503 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~------g~~ 503 (2435)
++||+++++.+..+.+|...|.+++|.+++ .++++|+.|+.|++||++.........|...+.+++|.|. +.+
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCE
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 999999999999999999999999999986 5788999999999999976544444568889999999985 458
Q ss_pred EEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccC
Q psy4869 504 VLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKN 583 (2435)
Q Consensus 504 l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~ 583 (2435)
|++|+.|+.|++||+++++....+.+|...|.+++|+|+|++|++++.|++|+|||++. .+++..+..+ ..
T Consensus 169 l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-----~~ 239 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA----KKAMYTLSAQ-----DE 239 (319)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT----TEEEEEEECC-----SC
T ss_pred EEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CcEEEEecCC-----Cc
Confidence 99999999999999999999999999999999999999999999999999999999983 5667777654 37
Q ss_pred eEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC--------CCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 584 LLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG--------HNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 584 i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~--------h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.+++|+|++.+|++++.+ .+++|++..+..+..+.. |...|.+++|+|++++|++|+.||.|++|++.
T Consensus 240 v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 240 VFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 8999999999999988765 499999998887776643 46679999999999999999999999999985
No 63
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-33 Score=352.56 Aligned_cols=294 Identities=21% Similarity=0.249 Sum_probs=260.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
+....+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd 83 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN 83 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc-eeeEeeccCCCEEEEEEee-CCCEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHEDSVTGVTFVP-KTHYFF 1230 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~~~h~~~V~~i~~sp-d~~~lv 1230 (2435)
+.+++.+..+ .+|...|.+++|+|++.+|++|+.|+.|++||++++. ....+.+|...|.+++|+| ++..|+
T Consensus 84 ~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 84 YNTGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp TTTCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred CCCCcEEEEE------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 9998776655 4899999999999999999999999999999999874 4567889999999999999 678999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+|+.|+.|++||++.......+..
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~-------------------------------------------------------- 181 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTT-------------------------------------------------------- 181 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEEC--------------------------------------------------------
T ss_pred EEeCCCeEEEEECCCCCccceecc--------------------------------------------------------
Confidence 999999999999976544322110
Q ss_pred ccccccEEEEEecC--CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q psy4869 1311 LKLEEQVLCARVSP--DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388 (2435)
Q Consensus 1311 ~~~~~~i~~ia~sp--dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g 1388 (2435)
.....+..+.|+| ++.+|++|+.||.|++||+.+++++..+.+|...|..++|+|++++|++|+.||.|++||+.++
T Consensus 182 -~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 182 -GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp -CCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred -CCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 1123456667765 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecccccceEEEEEeeCCC--EEEEEeCCCcEEEEECCCc
Q psy4869 1389 DCHKSLLAHEDSVTGVTFVPKTH--YFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1389 k~~~~~~~h~~~V~~laf~P~~~--~laSgg~Dg~V~lWd~~~~ 1430 (2435)
++...+..|...|.+++|+|++. ++++|+.| .+.+|++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp CEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred ceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 99999999999999999999884 56766655 5888887653
No 64
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.7e-33 Score=349.23 Aligned_cols=294 Identities=33% Similarity=0.592 Sum_probs=262.8
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.....+.+|.+.|++++|+|+|++|++|+.||.|++|+..... ....+.+|...|.+++|+|++++|++++.|+.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 3456789999999999999999999999999999999987643 455678999999999999999999999999999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEecCC
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDN 511 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg 511 (2435)
|+++++.+..+.+|...|.++.|.|++ .++++++.|+.|++||+++++.+..+ .+...|.+++|+|++++|++|+.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 999999999999999999999999987 56789999999999999998887777 4677899999999999999999999
Q ss_pred eEEEEECCCCcEEEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEc
Q psy4869 512 DIKMWDLRTNSVVQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWS 590 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~s 590 (2435)
.|++||+++++.+..+. .|...+.+++|+|++++|++++.|+.|++||++ ..+++..+.+|.... ..+......
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~-~~~~~~~~~ 246 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS----KGKCLKTYTGHKNEK-YCIFANFSV 246 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT----TTEEEEEECSSCCSS-SCCCEEEEC
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC----CCcEEEEEEecCCce-EEEEEEEEe
Confidence 99999999999888774 567789999999999999999999999999998 457778887775422 122223334
Q ss_pred CCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE--CCCcEEEecCC
Q psy4869 591 VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS--SDKTIYLGESP 653 (2435)
Q Consensus 591 pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs--~Dg~I~vWd~~ 653 (2435)
+++++|++|+.||.|++||+++++++..+.+|...|.+++|+|++++|++++ .|+.|++|+.+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 6889999999999999999999999999999999999999999999999998 69999999875
No 65
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=360.32 Aligned_cols=296 Identities=21% Similarity=0.262 Sum_probs=263.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
+....+.+|...|.+++|+|++++|++|+.||.|++||..+++....+..|...|.+++|+|++..|++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee--CCCEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP--KTHYFF 1230 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp--d~~~lv 1230 (2435)
+..............+..|...|.+++|++++..|++++.|+.|++||+++++.+..+.+|...|.++.|+| +++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 864321110011122347999999999999999999999999999999999999999999999999999988 568999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+|+.||.|++||+++.+.+..+.
T Consensus 215 sgs~Dg~v~~wd~~~~~~~~~~~--------------------------------------------------------- 237 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQCVQAFE--------------------------------------------------------- 237 (354)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC---------------------------------------------------------
T ss_pred EEeCCCeEEEEECCCCcEEEEec---------------------------------------------------------
Confidence 99999999999998766543221
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH--KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1388 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h--~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g 1388 (2435)
.+...|.+++|+|++++||+|+.||.|++||+...+.+..+..+ ...+.+++|+|+|++|++|+.|+.|++||+.++
T Consensus 238 -~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 238 -THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred -CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC
Confidence 12457899999999999999999999999999988877766643 457899999999999999999999999999999
Q ss_pred ceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1389 DCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1389 k~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+++..+.+|..+|++|+|+|++.+|++|+.||.|+||+
T Consensus 317 ~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 317 SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999999999999999999999999999999999996
No 66
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=359.79 Aligned_cols=296 Identities=24% Similarity=0.410 Sum_probs=251.4
Q ss_pred eeEecccCC-cEEEEEECCCCCEEEEEeCCCeEEEEecCCceee--EEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEE
Q psy4869 355 IMLLEGHGG-EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECEN--IGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAV 431 (2435)
Q Consensus 355 ~~~l~gH~~-~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~--~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~v 431 (2435)
...+.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+...... .....+|...|.+++|+|++++|++++.|+.+++
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 456789988 9999999999999999999999999998765322 2234689999999999999999999999999999
Q ss_pred EECCCC--ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce---Eee-cCcccEEEEEECCCCCEEE
Q psy4869 432 WDLEKG--QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA---VSM-NNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 432 wd~~tg--~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~---~~~-~~~~~v~sv~~sp~g~~l~ 505 (2435)
||+..+ +.+..+.+|...|.+++|+|++ .+|++++.|+.|++||++.+... ..+ .|...|.+++|+|++++|+
T Consensus 88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 166 (345)
T 3fm0_A 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLA 166 (345)
T ss_dssp EEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEE
T ss_pred EEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEE
Confidence 999876 4577889999999999999987 57889999999999999876432 233 5778899999999999999
Q ss_pred EEecCCeEEEEECCCCc--EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-----------CCceEEE
Q psy4869 506 TGGIDNDIKMWDLRTNS--VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP-----------GERCVKV 572 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~--~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~-----------~~~~v~~ 572 (2435)
+|+.|+.|++||.++++ ....+.+|.+.|.+++|+|+|++|++++.|++|+|||+..... ..+++..
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEE
Confidence 99999999999998875 4577899999999999999999999999999999999753211 1134445
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc---------EEEEecCCCCCeeEEEEcCCCC-EEEEEE
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR---------IAYKLPGHNGSVNDVQFHPKEP-IIMSAS 642 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~---------~~~~l~~h~~~V~~l~fspd~~-~Lasgs 642 (2435)
+.+.. ...+..++|+|++.+|++++.|+.|++|+...+. ....+.+|...|++|+|+|+++ +||+|+
T Consensus 247 ~~~~h---~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 247 LSGFH---SRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS 323 (345)
T ss_dssp ECSSC---SSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred ecCCC---CCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence 54421 3478999999999999999999999999987542 1233468999999999999985 999999
Q ss_pred CCCcEEEecCCC
Q psy4869 643 SDKTIYLGESPL 654 (2435)
Q Consensus 643 ~Dg~I~vWd~~~ 654 (2435)
.||+|++|++..
T Consensus 324 ~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 324 DDGEVAFWKYQR 335 (345)
T ss_dssp TTSCEEEEEECC
T ss_pred CCCcEEEEEecC
Confidence 999999999873
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-33 Score=367.40 Aligned_cols=325 Identities=13% Similarity=0.161 Sum_probs=286.7
Q ss_pred ccCCCEEEEEEcCCCC-EEEEEECCCcEEEEEc----CCCe------EEEEEec----------CCcCEEEEEEcCCCCE
Q psy4869 1038 KLEEQVLCARVSPDSK-LLAVSLLDTTVKIFFL----DTFK------FFISLYG----------HKLPVLSLDMSYDSTL 1096 (2435)
Q Consensus 1038 ~~~~~v~~l~~spdg~-~Lavg~~dg~V~i~d~----~~~~------~~~~l~~----------h~~~V~sl~~spdg~~ 1096 (2435)
.+.+.|.+++|+|+|+ +|++|+.||.|++|++ .+++ ....+.. |...|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3457899999999999 9999999999999999 8777 4555554 6889999999999999
Q ss_pred EEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccC--
Q psy4869 1097 IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLP-- 1174 (2435)
Q Consensus 1097 L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~-- 1174 (2435)
|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.+++....+. .+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~~~~~~ 195 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE------LKETGGS 195 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC------CC-----
T ss_pred EEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee------ccccCcc
Confidence 99999999999999 6788899999999999999999999999999999999999999887665543 34444
Q ss_pred -------------eEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1175 -------------VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1175 -------------V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
+.+++|++++ .+++++.||.|++||+++++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred ceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 8899999875 68899999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEE
Q psy4869 1242 DADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321 (2435)
Q Consensus 1242 D~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 1321 (2435)
|++..+.+..+. .+...+.+++
T Consensus 275 d~~~~~~~~~~~----------------------------------------------------------~~~~~i~~~~ 296 (425)
T 1r5m_A 275 HGGNGNSQNCFY----------------------------------------------------------GHSQSIVSAS 296 (425)
T ss_dssp CSSSBSCSEEEC----------------------------------------------------------CCSSCEEEEE
T ss_pred ECCCCccceEec----------------------------------------------------------CCCccEEEEE
Confidence 987654322210 1245789999
Q ss_pred ecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc------------
Q psy4869 1322 VSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD------------ 1389 (2435)
Q Consensus 1322 ~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk------------ 1389 (2435)
|+|++ +|++++.||.|++||+.+++.+..+..|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 375 (425)
T 1r5m_A 297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG 375 (425)
T ss_dssp EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------
T ss_pred ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc
Confidence 99999 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred --------eEEEeccccc--ceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1390 --------CHKSLLAHED--SVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1390 --------~~~~~~~h~~--~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++..+..|.. .|++++|+|++.+|++++.||.|++||++.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 376 ILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp ---CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred ccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 8899999976 999999999999999999999999999863
No 68
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.4e-34 Score=367.49 Aligned_cols=324 Identities=21% Similarity=0.265 Sum_probs=242.3
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC------CCcEEEEEccCCce---
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG------DRTVKVWGLDYGDC--- 1116 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~------Dg~I~vWd~~t~~~--- 1116 (2435)
+.+.+++.++...+ +.....|++.... ...|...|.+++|+|||++|++|+. |+.|++|+..++..
T Consensus 11 ~d~g~~~~~~~~~g-~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTENLYFQSNG-SSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccceEEecCC-CccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 34444444444433 5667888765432 3469999999999999999999997 77899999877643
Q ss_pred -eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1117 -HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1117 -~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
......|...|.+++|+|++. +++++.||.|++||+.+++...... ....+|...|.+++|+|++++|++|+.|+.
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~--~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK--FAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC--EEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe--eccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 234456889999999999875 5667889999999998876543322 223578999999999999999999999999
Q ss_pred EEEEEccCCceeeEeeccCCCEEEEEEeeCCC-EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1196 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~-~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
|++||+++++.+..+..|...|.+++|++++. .+++++.||.|++||+++.+.+..+.
T Consensus 163 v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~--------------------- 221 (357)
T 4g56_B 163 VKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID--------------------- 221 (357)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---------------------
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---------------------
Confidence 99999999999999999999999999999764 78899999999999988755422110
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCc-ceeEEeecCCeEEEEEcccceEEEEec
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS-KLLAVSLLDTTVKIFFLDTFKFFISLY 1353 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg-~~lavgs~dG~V~v~d~~~~k~i~~~~ 1353 (2435)
.......+.+++|+|++ .+||+|+.||.|++||+.+++.+..+.
T Consensus 222 -----------------------------------~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~ 266 (357)
T 4g56_B 222 -----------------------------------FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA 266 (357)
T ss_dssp -----------------------------------CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred -----------------------------------eccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence 01124568899999985 678899999999999999999999999
Q ss_pred CCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee-CCCEEEEEeCCCcEEEEECCCce
Q psy4869 1354 GHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1354 ~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P-~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
+|...|.+++|+|++ ++|++|+.|+.|+|||+++++++..+ +|.++|++|+|+| ++.+|+|+|.||.|++||+....
T Consensus 267 ~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 267 VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999999999987 58999999999999999999987654 8999999999999 78999999999999999998654
Q ss_pred eEE
Q psy4869 1432 RIV 1434 (2435)
Q Consensus 1432 ~l~ 1434 (2435)
+..
T Consensus 346 ~~~ 348 (357)
T 4g56_B 346 RTE 348 (357)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 69
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=355.93 Aligned_cols=307 Identities=25% Similarity=0.345 Sum_probs=251.9
Q ss_pred CCeEEEEEecCCc-CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE--E-EeccCCCEEEEEEccCCCEEEEEeCCC
Q psy4869 1071 TFKFFISLYGHKL-PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--S-LLAHEDSVTGVTFVPKTHYFFTTSKDG 1146 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~-~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~--~-l~~h~~~V~~v~fsp~~~~l~s~s~Dg 1146 (2435)
..+++..+.+|.. .|.+++|+|++++|++|+.|+.|+|||++.+.... . ..+|...|.+++|+|++++|++++.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 3456778889988 99999999999999999999999999998876432 2 257999999999999999999999999
Q ss_pred cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc---eeeEeeccCCCEEEEEEe
Q psy4869 1147 RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFV 1223 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~---~~~~~~~h~~~V~~i~~s 1223 (2435)
.|++||+...... ....+.+|...|.+++|+|++++|++|+.|+.|++||++.+. ++..+..|...|.+++|+
T Consensus 84 ~v~iw~~~~~~~~----~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (345)
T 3fm0_A 84 TTCIWKKNQDDFE----CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159 (345)
T ss_dssp CEEEEEECCC-EE----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEEC
T ss_pred cEEEEEccCCCeE----EEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEEC
Confidence 9999998765421 223456899999999999999999999999999999998764 456678899999999999
Q ss_pred eCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccccee
Q psy4869 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1303 (2435)
Q Consensus 1224 pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 1303 (2435)
|++++|++++.|+.|++||.+..+..... .+
T Consensus 160 p~~~~l~s~s~d~~i~~w~~~~~~~~~~~--------------------------~~----------------------- 190 (345)
T 3fm0_A 160 PSQELLASASYDDTVKLYREEEDDWVCCA--------------------------TL----------------------- 190 (345)
T ss_dssp SSSSCEEEEETTSCEEEEEEETTEEEEEE--------------------------EE-----------------------
T ss_pred CCCCEEEEEeCCCcEEEEEecCCCEEEEE--------------------------Ee-----------------------
Confidence 99999999999999999997654321100 00
Q ss_pred eeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEccc---------------ceEEEEecC-CCCCeEEEEEecC
Q psy4869 1304 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDT---------------FKFFISLYG-HKLPVLSLDMSYD 1367 (2435)
Q Consensus 1304 ~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~---------------~k~i~~~~~-h~~~V~~la~spd 1367 (2435)
..+...|.+++|+|+|++||+|+.||.|+||+... .+++..+.+ |...|.+++|+|+
T Consensus 191 -------~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 191 -------EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred -------cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 12346799999999999999999999999999632 234555655 8889999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCc--------e-EEEecccccceEEEEEeeCC-CEEEEEeCCCcEEEEECCCceeEEEEe
Q psy4869 1368 STLIATGSGDRTVKVWGLDYGD--------C-HKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1368 g~~L~sGg~Dg~V~iwdl~~gk--------~-~~~~~~h~~~V~~laf~P~~-~~laSgg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
+.+|++|+.|+.|++|+...+. + .....+|...|++|+|+|++ .+|||||.||.|++|++...+++.+++
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~~ 343 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHHH 343 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--------
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCccccc
Confidence 9999999999999999987653 1 12346899999999999998 599999999999999999988887764
No 70
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-34 Score=367.84 Aligned_cols=318 Identities=15% Similarity=0.203 Sum_probs=240.5
Q ss_pred EeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeC------CCCEEEEEccCCee---
Q psy4869 81 LSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSK------DTDIVLWDVVAECG--- 151 (2435)
Q Consensus 81 ~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~------Dg~I~iWd~~~~~~--- 151 (2435)
+....++ +++.+.++.....|++....+ .+|++.|++++|+|||++||+||. |+.|++|+...+.+
T Consensus 11 ~d~g~~~-~~~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTEN-LYFQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccc-eEEecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 3344444 334444567788898875544 479999999999999999999998 77899998876543
Q ss_pred -EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc----ccccceEEEEEEEeCCCeEEEeeCCCc
Q psy4869 152 -LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM----AAHLTEVWGVCVMREDSYLISGSNDAE 226 (2435)
Q Consensus 152 -~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~----~~h~~~V~~l~~~p~~~~l~s~s~Dg~ 226 (2435)
.....+|...|.+++|+|+ + .+++++.||+|+|||+.+++.+... .+|.+.|.+++|+|++++|++|+.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d--~-~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~ 162 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSE--K-GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS 162 (357)
T ss_dssp GCSEEEECSSCEEEEEEETT--T-EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred EecccCCCCCCEEEEEEcCC--C-CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 3445689999999999864 3 3667889999999999998865433 489999999999999999999999999
Q ss_pred EEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccc
Q psy4869 227 LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFA 306 (2435)
Q Consensus 227 v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2435)
|++||+++++.
T Consensus 163 v~iwd~~~~~~--------------------------------------------------------------------- 173 (357)
T 4g56_B 163 VKVWDLSQKAV--------------------------------------------------------------------- 173 (357)
T ss_dssp EEEEETTTTEE---------------------------------------------------------------------
T ss_pred EEEEECCCCcE---------------------------------------------------------------------
Confidence 99999874310
Q ss_pred cccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCe
Q psy4869 307 FGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQ 385 (2435)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~ 385 (2435)
...+.+|.+.|++++|+|++. ++++++.||.
T Consensus 174 ------------------------------------------------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~ 205 (357)
T 4g56_B 174 ------------------------------------------------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGR 205 (357)
T ss_dssp ------------------------------------------------EEEECCCSSCEEEEEECTTCSSCEEEEETTSC
T ss_pred ------------------------------------------------EEEEcCCCCCEEEEEEccCCCceeeeeccCCc
Confidence 123568999999999999875 7899999999
Q ss_pred EEEEecCCceee-EEEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEE
Q psy4869 386 IFIWSVYGECEN-IGVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLI 463 (2435)
Q Consensus 386 I~iwd~~~~~~~-~~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ll 463 (2435)
|++||++..... ...+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++..+|
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~l 285 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFL 285 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCE
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEE
Confidence 999999764322 2234567889999999997 46888999999999999999999999999999999999999998899
Q ss_pred EEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcE
Q psy4869 464 ASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSV 523 (2435)
Q Consensus 464 asgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~ 523 (2435)
++|+.|++|+|||+++++.+..+.|...|++++|+| ++++|++|+.||.|++||+.+...
T Consensus 286 asgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 286 ASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred EEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 999999999999999999888888999999999998 799999999999999999976443
No 71
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.6e-34 Score=359.29 Aligned_cols=291 Identities=21% Similarity=0.238 Sum_probs=243.6
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC-----------CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcE
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY-----------GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1148 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t-----------~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V 1148 (2435)
.|...|.+++|+|||++|++++ |+++++||... .........+...|.+++|+|++ .|++++.||.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence 4667799999999999999887 77788886321 11112223467789999999975 68899999999
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCC-C
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-H 1227 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~-~ 1227 (2435)
++||+.+++...... ....+|...|++++|+|++++|++|+.|+.|++||+++++++..+.+|.+.|.+++|++++ .
T Consensus 106 ~lWd~~~~~~~~~~~--~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 106 ELWELDENETLIVSK--FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEECTTSSCEEEE--EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEeccCCCceeEee--ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 999999887665543 2345899999999999999999999999999999999999999999999999999999987 5
Q ss_pred EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeee
Q psy4869 1228 YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLH 1307 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1307 (2435)
.|++++.|+.|++||+++.+....+...
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~---------------------------------------------------- 211 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCS---------------------------------------------------- 211 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC------------------------------------------------------
T ss_pred ceeeeccccccccccccccceeeeeecc----------------------------------------------------
Confidence 7899999999999999887654432110
Q ss_pred cccccccccEEEEEecCC-cceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeC
Q psy4869 1308 TRTLKLEEQVLCARVSPD-SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGL 1385 (2435)
Q Consensus 1308 ~~~~~~~~~i~~ia~spd-g~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl 1385 (2435)
.....+.+++|+|+ +++||+|+.||.|+|||+.+++++..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+
T Consensus 212 ----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 212 ----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDS 287 (344)
T ss_dssp ------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred ----eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEEC
Confidence 11345788999995 5678899999999999999999999999999999999999998 58999999999999999
Q ss_pred CCCceEEEecccccceEEEEEeeCCC-EEEEEeCCCcEEEEECCCce
Q psy4869 1386 DYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1386 ~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
.+++++ .+.+|.++|++|+|+|++. +|+|+|.||.|++|++....
T Consensus 288 ~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred CCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 999875 5689999999999999985 67899999999999998754
No 72
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.7e-33 Score=346.39 Aligned_cols=295 Identities=27% Similarity=0.457 Sum_probs=265.9
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
.......+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFF 1230 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lv 1230 (2435)
||+++++.+..+ ..|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|..+|.++.|+|++++|+
T Consensus 92 wd~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 92 WDVSSGKCLKTL------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp EETTTCCEEEEE------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECCCCcEEEEE------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 999988766554 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+++.||.|++||+++.+.+..+..
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~~-------------------------------------------------------- 189 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLID-------------------------------------------------------- 189 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEECC--------------------------------------------------------
T ss_pred EEeCCCcEEEEECCCCceeeEEec--------------------------------------------------------
Confidence 999999999999987655432210
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEE--EEE-ecCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLS--LDM-SYDSTLIATGSGDRTVKVWGLDY 1387 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~--la~-spdg~~L~sGg~Dg~V~iwdl~~ 1387 (2435)
.....+.+++|+|++++|++++.||.|++||+.+++.+..+.+|...+.. ..+ .+++++|++|+.||.|++||+.+
T Consensus 190 -~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 190 -DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp -SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTT
T ss_pred -cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCC
Confidence 11245788999999999999999999999999999999999988765432 233 46889999999999999999999
Q ss_pred CceEEEecccccceEEEEEeeCCCEEEEEe--CCCcEEEEECC
Q psy4869 1388 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--KDGRVKQWDAD 1428 (2435)
Q Consensus 1388 gk~~~~~~~h~~~V~~laf~P~~~~laSgg--~Dg~V~lWd~~ 1428 (2435)
++++..+.+|..+|.+++|+|++.+|++++ .||.|++|+.+
T Consensus 269 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 269 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred chhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 999999999999999999999999999987 69999999975
No 73
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-33 Score=355.39 Aligned_cols=288 Identities=24% Similarity=0.391 Sum_probs=247.3
Q ss_pred eeEecccCCcEEEEEE-----CC-CCCEEEEEeCCCeEEEEecCCc------eeeEEEeeCCCCCeeEEEEccCCCEEEE
Q psy4869 355 IMLLEGHGGEIFCSKY-----HP-DGQYIASSGYDRQIFIWSVYGE------CENIGVMSGHTGAVMDLKFSTDGCHIFT 422 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~f-----sp-dg~~Lasgs~Dg~I~iwd~~~~------~~~~~~l~~h~~~V~~l~~s~dg~~L~s 422 (2435)
...+.||.+.|++++| ++ ++++|++|+.|+.|++||+... ......+.+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4578999999999999 76 8999999999999999998643 2345678899999999999999999999
Q ss_pred EeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECC
Q psy4869 423 CSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFND 499 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp 499 (2435)
++.|+.|++||+++++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+......... .+...|.+++|+|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 99999999999999999999999999999999999874 6778999999999999844332222 4677899999999
Q ss_pred CC----------CEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce
Q psy4869 500 TA----------ECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC 569 (2435)
Q Consensus 500 ~g----------~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~ 569 (2435)
++ .+|++|+.||.|++|| ...+....+.+|...|.+++|+|+|++|++++.|++|++||++.. ...
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~---~~~ 248 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNL---TYP 248 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC---SSC
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCC---ccc
Confidence 87 7999999999999999 556778889999999999999999999999999999999999532 222
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE--Eec-----------CCCCCeeEEEEcCCCC
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY--KLP-----------GHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~--~l~-----------~h~~~V~~l~fspd~~ 636 (2435)
...+.. ...+.+++|+|++++|++| .|+.|++||+.+++... .+. +|...|++++|+|+++
T Consensus 249 ~~~~~~-----~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 322 (343)
T 2xzm_R 249 QREFDA-----GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK 322 (343)
T ss_dssp SEEEEC-----SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred ceeecC-----CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence 333321 1258999999999988765 57789999998775433 443 6888999999999999
Q ss_pred EEEEEECCCcEEEecCC
Q psy4869 637 IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 637 ~Lasgs~Dg~I~vWd~~ 653 (2435)
+|++|+.||.|++|+++
T Consensus 323 ~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp CEEEEETTSEEEEEEEE
T ss_pred eEEEecCCceEEEEEEE
Confidence 99999999999999985
No 74
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-35 Score=382.90 Aligned_cols=364 Identities=14% Similarity=0.237 Sum_probs=287.8
Q ss_pred ceEEEeecCCCC-eEEEE----------EcCCeEEEEECCCCC---eEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEE
Q psy4869 77 EVCQLSPNHDSS-QLAVA----------YTNGSLKTFSLDTTD---VISTFTGHKSAITVIQYDPLGHRLATGSKDTDIV 142 (2435)
Q Consensus 77 ~v~~~~~~~d~~-~lav~----------~~~G~i~i~d~~~~~---~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~ 142 (2435)
.+.+++|+|+++ ++|++ +.||.|++||+.+++ ++..+ +|...|++++|+|++.+||+|+.||.|+
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 456899999987 88888 789999999999875 44444 5999999999999999999999999999
Q ss_pred EEEccC----CeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc------cc---cccccccceEEEE
Q psy4869 143 LWDVVA----ECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD------CF---KTMAAHLTEVWGV 209 (2435)
Q Consensus 143 iWd~~~----~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~------~~---~~~~~h~~~V~~l 209 (2435)
|||+.. .+.+..+.+|.+.|.+++|+|+ ++.+|++++.|+.|++||+++++ .. ..+..|...|.++
T Consensus 93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 999987 4578889999999999999864 35689999999999999999987 33 3347899999999
Q ss_pred EEEeC-CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 210 CVMRE-DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 210 ~~~p~-~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
+|+|+ +.+|++++.|+.|++||++.++.+..
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~------------------------------------------------ 203 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIH------------------------------------------------ 203 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEE------------------------------------------------
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceE------------------------------------------------
Confidence 99999 78899999999999999885321000
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
+... ....+|...|.++
T Consensus 204 -----------------------------------------~~~~----------------------~~~~~~~~~v~~~ 220 (416)
T 2pm9_A 204 -----------------------------------------LSYT----------------------SPNSGIKQQLSVV 220 (416)
T ss_dssp -----------------------------------------ECCC----------------------CCSSCCCCCEEEE
T ss_pred -----------------------------------------Eecc----------------------ccccccCCceEEE
Confidence 0000 0013678899999
Q ss_pred EECCCC-CEEEEEeCCC---eEEEEecCCceeeEEEee-CCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 369 KYHPDG-QYIASSGYDR---QIFIWSVYGECENIGVMS-GHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 369 ~fspdg-~~Lasgs~Dg---~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
+|+|++ .+|++++.|+ .|++||++........+. +|...|.+++|+| ++++|++++.|+.|++||+++++.+..
T Consensus 221 ~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 221 EWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp EECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEE
T ss_pred EECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcccee
Confidence 999997 6999999999 999999987545556677 8999999999999 999999999999999999999999999
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC---cccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN---TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~---~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
+.+|...|.+++|+|+++.++++++.|+.|++||+........... ........+.+.+..++.++..+.+.+
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 376 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHL---- 376 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCC----
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccc----
Confidence 9999999999999999888999999999999999987664433211 122233344444444443333222211
Q ss_pred CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 520 TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 520 s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.....|...+.+++|+|||++|++++.|++|+|||+..
T Consensus 377 -----~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 377 -----QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp -----CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred -----cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 22245788899999999999999999999999999873
No 75
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-33 Score=362.81 Aligned_cols=288 Identities=25% Similarity=0.476 Sum_probs=254.3
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCC------------------CCCeeEEEEccCCCEE
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGH------------------TGAVMDLKFSTDGCHI 420 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h------------------~~~V~~l~~s~dg~~L 420 (2435)
.+|.+.|.+++|+|+|++||+|+ ++.+++|++..+.. +..+..| ...|.+++|+||+++|
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL-VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE-EEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE-EEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 37999999999999999999986 78999999876532 2333333 2349999999999999
Q ss_pred EEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECC-
Q psy4869 421 FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFND- 499 (2435)
Q Consensus 421 ~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp- 499 (2435)
++++.|+.|++||+++++.+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++....+.+...+.+++|+|
T Consensus 139 ~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~ 217 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217 (393)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred EEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECC
Confidence 9999999999999999999999999999999999999884 67899999999999999999888888888999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEE-------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC-------
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKL-------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP------- 565 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l-------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~------- 565 (2435)
++++|++|+.||.|++||+++++.+..+ .+|.+.|.+++|+|+|++|++++.|++|++||++....
T Consensus 218 ~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 218 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC
Confidence 8999999999999999999999988777 57999999999999999999999999999999975321
Q ss_pred -CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcC------CCCEE
Q psy4869 566 -GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP------KEPII 638 (2435)
Q Consensus 566 -~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp------d~~~L 638 (2435)
...+...+.+|. ..+.+++|+|++++|++|+.|+.|++||.++++++..+.+|.+.|.+++|++ ++++|
T Consensus 298 ~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 298 NSGTCEVTYIGHK----DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ---CEEEEEECCS----SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCcceEEEeccc----CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 134556677775 4789999999999999999999999999999999999999999999999986 67899
Q ss_pred EEEECCCcEEEecCC
Q psy4869 639 MSASSDKTIYLGESP 653 (2435)
Q Consensus 639 asgs~Dg~I~vWd~~ 653 (2435)
++|+.||+|++|++.
T Consensus 374 ~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 374 ATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEECCCCcEEECccc
Confidence 999999999999985
No 76
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.3e-33 Score=351.23 Aligned_cols=290 Identities=22% Similarity=0.417 Sum_probs=256.6
Q ss_pred eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC-----CccccccccccceEEEEEEEeCCCeEEEeeCC
Q psy4869 150 CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT-----GDCFKTMAAHLTEVWGVCVMREDSYLISGSND 224 (2435)
Q Consensus 150 ~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t-----g~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~D 224 (2435)
....+|.||.+.|.+++|+|. +..+|++|+.|++|++||+.. +.++..+.+|...|.+++|+|++++|++|+.|
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~-~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAG-QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD 86 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEEccccceEEEEEccCC-CccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence 345678999999999999863 346899999999999999865 34567889999999999999999999999999
Q ss_pred CcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCc
Q psy4869 225 AELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDD 304 (2435)
Q Consensus 225 g~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (2435)
++|++||+++++.
T Consensus 87 ~~v~~wd~~~~~~------------------------------------------------------------------- 99 (319)
T 3frx_A 87 KTLRLWDVATGET------------------------------------------------------------------- 99 (319)
T ss_dssp SEEEEEETTTTEE-------------------------------------------------------------------
T ss_pred CEEEEEECCCCCe-------------------------------------------------------------------
Confidence 9999999874310
Q ss_pred cccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCC
Q psy4869 305 FAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDR 384 (2435)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg 384 (2435)
...+.+|.+.|.+++|+|++.+|++|+.|+
T Consensus 100 --------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~ 129 (319)
T 3frx_A 100 --------------------------------------------------YQRFVGHKSDVMSVDIDKKASMIISGSRDK 129 (319)
T ss_dssp --------------------------------------------------EEEEECCSSCEEEEEECTTSCEEEEEETTS
T ss_pred --------------------------------------------------eEEEccCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 113558999999999999999999999999
Q ss_pred eEEEEecCCceeeEEEeeCCCCCeeEEEEccC------CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC
Q psy4869 385 QIFIWSVYGECENIGVMSGHTGAVMDLKFSTD------GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR 458 (2435)
Q Consensus 385 ~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d------g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~ 458 (2435)
.|++||++.. ....+.+|...|.+++|.|+ +..|++++.|+.|++||+++++....+.+|...|.+++|+|+
T Consensus 130 ~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 130 TIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp CEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred eEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence 9999999754 45678899999999999984 458999999999999999999999999999999999999998
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe--------cC
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--------GH 530 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~--------~h 530 (2435)
+ .+|++++.|+.|++||+++++.+..+.....+.+++|+|++.+|+++.. +.+++|++..+..+..+. .|
T Consensus 208 g-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~ 285 (319)
T 3frx_A 208 G-TLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAA 285 (319)
T ss_dssp S-SEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGG
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCc
Confidence 7 5788999999999999999999888888889999999999999988875 459999999888877764 34
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 531 SDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 531 ~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
...+.+++|+|||++|++|+.|++|+|||+.
T Consensus 286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred CcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 6789999999999999999999999999986
No 77
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.6e-33 Score=350.18 Aligned_cols=322 Identities=17% Similarity=0.267 Sum_probs=280.4
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---e
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---C 1116 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~ 1116 (2435)
.++|.+++|+|||++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++ .
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee
Confidence 35688999999999999998777777766555555555567999999999999999999998 9999999998765 3
Q ss_pred eEEEe--ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1117 HKSLL--AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1117 ~~~l~--~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
+..+. .|...|.+++|+|++++|++++.|+.|++||+.+.+.... .....|...|.+++|+++++++++++.||
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 163 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----AELTSSAPACYALAISPDSKVCFSCCSDG 163 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE----EEEECSSSCEEEEEECTTSSEEEEEETTS
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee----eecccCCCceEEEEECCCCCEEEEEeCCC
Confidence 34443 6899999999999999999999999999999988763222 23457889999999999999999999999
Q ss_pred cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCe
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKS 1274 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~ 1274 (2435)
.|++||+++++.+..+..|...|.+++|+|+++.|++++.||.|++||++..+.+..+
T Consensus 164 ~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------- 221 (337)
T 1gxr_A 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---------------------- 221 (337)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------
T ss_pred cEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee----------------------
Confidence 9999999999999999999999999999999999999999999999999876543221
Q ss_pred EEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC
Q psy4869 1275 VKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1275 v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~ 1354 (2435)
.....+.+++|+|++++|++++.+|.|++||+..++. ..+..
T Consensus 222 -------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~ 263 (337)
T 1gxr_A 222 -------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHL 263 (337)
T ss_dssp -------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECC
T ss_pred -------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcC
Confidence 1134578999999999999999999999999998875 46778
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEEC
Q psy4869 1355 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1355 h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
|...|.+++|+|++++|++++.||.|++|++.+++.+.. ..|..+|++++|+|++.+|++++.||.|++||+
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999999999999999999999999999999999998744 468889999999999999999999999999996
No 78
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=356.06 Aligned_cols=284 Identities=19% Similarity=0.292 Sum_probs=239.8
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC----------ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCe
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG----------ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~----------~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~ 428 (2435)
..|...|.+++|+|||++|++++ |+.+|+||... ..........|...|.+++|++|+ .|++++.||.
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46788899999999999999887 77788887320 000111223456789999999985 7889999999
Q ss_pred EEEEECCCCceEEE----EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCC-
Q psy4869 429 LAVWDLEKGQRIKK----MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAE- 502 (2435)
Q Consensus 429 I~vwd~~tg~~v~~----l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~- 502 (2435)
|+|||+++++.+.. +.+|...|.+++|+|++ .+|++|+.|++|++||+++++.+..+ .|...|.+++|+|++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 99999998875543 45899999999999987 56889999999999999999988887 4888999999999885
Q ss_pred EEEEEecCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 503 CVLTGGIDNDIKMWDLRTNSVVQKLR--GHSDTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 503 ~l~sgs~dg~V~lwD~~s~~~v~~l~--~h~~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
+|++|+.||.|++||+++++.+..+. .|...+.+++|+|+ +++|++|+.|++|+|||++ ..+++..+.+|.
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~----~~~~~~~~~~h~-- 257 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLSSAVHS-- 257 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESC----C--CCEEEECCS--
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECC----CCcEEEEEcCCC--
Confidence 78999999999999999999988874 46668999999995 6788999999999999998 457788888886
Q ss_pred cccCeEEEEEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCCC
Q psy4869 580 FEKNLLRCAWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 580 ~~~~i~~v~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~~ 654 (2435)
..|.+++|+|+| ++|++|+.|++|+|||+++++++ .+.+|.+.|++|+|+|+++ +|++||.||+|++|+++.
T Consensus 258 --~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 258 --QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp --SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred --CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 478999999998 68999999999999999998875 4679999999999999986 678999999999999973
No 79
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=7.7e-33 Score=351.68 Aligned_cols=291 Identities=24% Similarity=0.426 Sum_probs=243.2
Q ss_pred eEEEecCCCCCEEEEEE-----cC-CCCEEEEEeCCCCEEEEEccCC-------eeEEEEecCCCcEEEEEEeecCCCcE
Q psy4869 109 VISTFTGHKSAITVIQY-----DP-LGHRLATGSKDTDIVLWDVVAE-------CGLHRLSGHKGVITDIRFMSQPGHHF 175 (2435)
Q Consensus 109 ~~~~l~gH~~~V~~l~f-----~p-~g~~laSgs~Dg~I~iWd~~~~-------~~~~~l~gH~~~V~~v~~~~~~~~~~ 175 (2435)
....|.||++.|++++| ++ ++++||||+.|++|+|||+... .+...+.+|.+.|.+++|+| ++.+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~--~~~~ 90 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQ--ENCF 90 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECS--STTE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECC--CCCE
Confidence 56689999999999999 76 8999999999999999998653 35678899999999999985 4678
Q ss_pred EEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeec
Q psy4869 176 VVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLL 255 (2435)
Q Consensus 176 l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 255 (2435)
|++++.|++|++||+++++++.++.+|...|++++|+|++++|++++.|++|++||+......
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~----------------- 153 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF----------------- 153 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-----------------
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-----------------
Confidence 999999999999999999999999999999999999999999999999999999998621000
Q ss_pred ccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccc
Q psy4869 256 SEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKN 335 (2435)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~ 335 (2435)
.
T Consensus 154 ---------------------------------------------------------------------------~---- 154 (343)
T 2xzm_R 154 ---------------------------------------------------------------------------S---- 154 (343)
T ss_dssp ---------------------------------------------------------------------------E----
T ss_pred ---------------------------------------------------------------------------e----
Confidence 0
Q ss_pred eeeeeecccccCccccccceeEecccCCcEEEEEECCCC----------CEEEEEeCCCeEEEEecCCceeeEEEeeCCC
Q psy4869 336 YKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDG----------QYIASSGYDRQIFIWSVYGECENIGVMSGHT 405 (2435)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg----------~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~ 405 (2435)
.....+|...|.+++|+|++ .+|++|+.||.|++||... .....+.+|.
T Consensus 155 -------------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~ 213 (343)
T 2xzm_R 155 -------------------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHE 213 (343)
T ss_dssp -------------------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCS
T ss_pred -------------------eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCcc
Confidence 00012577888899999886 7999999999999999543 3456788999
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK-GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t-g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~ 484 (2435)
..|.+++|+|++++|++++.|+.|++||+.. +.....+ .+...|.+++|+|++. +++ ++.|+.|++||+.+++...
T Consensus 214 ~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~-~la-~~~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 214 SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQ-WVA-VGTDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSC-EEE-EEESSCEEEEESSSCCSCS
T ss_pred ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCC-EEE-EECCCCEEEEEeCCCCCCc
Confidence 9999999999999999999999999999944 4444444 3455699999999874 444 5568889999998765433
Q ss_pred --ee------------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy4869 485 --SM------------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 485 --~~------------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~ 521 (2435)
.+ .+...+.+++|+|+|++|++|+.||.|++||++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 291 VCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 22 24567999999999999999999999999998654
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-32 Score=346.04 Aligned_cols=324 Identities=17% Similarity=0.271 Sum_probs=282.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc
Q psy4869 116 HKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC 195 (2435)
Q Consensus 116 H~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~ 195 (2435)
|.+.|.+++|+|+|++++.+..++.+.+|+...........+|.+.|.+++|+| ++.+|++++ ||.|++||+.+++.
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCCCCc
Confidence 567899999999999999999888888887666555556669999999999985 567888888 99999999998875
Q ss_pred ccccc-----cccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEE
Q psy4869 196 FKTMA-----AHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQ 270 (2435)
Q Consensus 196 ~~~~~-----~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 270 (2435)
...+. +|...|.+++|+|++++|++++.|+.|++||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--------------------------------- 131 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--------------------------------- 131 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------------------------------
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------------------------------
Confidence 44442 7899999999999999999999999999999874310
Q ss_pred eecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccc
Q psy4869 271 IINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSN 350 (2435)
Q Consensus 271 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 350 (2435)
T Consensus 132 -------------------------------------------------------------------------------- 131 (337)
T 1gxr_A 132 -------------------------------------------------------------------------------- 131 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 351 LFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 351 ~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
.....+.+|...|.+++|+|++++|++++.||.|++||+... .....+..|...|.+++|+|++++|++++.|+.|+
T Consensus 132 --~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 132 --RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred --ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 001134578889999999999999999999999999999765 35567788999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
+||+++++.+..+. |...+.++.|+|++ .++++++.|+.|++||++.++......+...+.+++|+|++++|++++.|
T Consensus 209 ~~d~~~~~~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 209 SWDLREGRQLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCceEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC
Confidence 99999998887765 67778999999987 46778899999999999998877666788999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
|.|++||+++++.+.. ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus 287 g~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 287 NLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999999988754 4588899999999999999999999999999974
No 81
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.9e-32 Score=353.20 Aligned_cols=297 Identities=27% Similarity=0.401 Sum_probs=255.9
Q ss_pred cccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc------------------CEEEEEEcCCCCEEE
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL------------------PVLSLDMSYDSTLIA 1098 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~------------------~V~sl~~spdg~~L~ 1098 (2435)
+.+...|.|++|+|||++||+|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++++|+
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence 45788999999999999999987 78999999999998888876542 399999999999999
Q ss_pred EEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEE
Q psy4869 1099 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL 1178 (2435)
Q Consensus 1099 Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l 1178 (2435)
+|+.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+++++....+ .+...+.++
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------~~~~~v~~~ 212 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-------SIEDGVTTV 212 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-------ECSSCEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-------EcCCCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999988765544 356789999
Q ss_pred EEeC-CCCEEEEEeCCCcEEEEEccCCceeeEe-------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEE
Q psy4869 1179 DMSY-DSTLIATGSGDRTVKVWGLDYGDCHKSL-------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1179 ~~s~-dg~~l~sgs~Dg~V~iwd~~t~~~~~~~-------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~ 1250 (2435)
+|+| ++++|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.|+.|++||++......
T Consensus 213 ~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~ 292 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292 (393)
T ss_dssp EECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 9999 8999999999999999999999877666 5799999999999999999999999999999987532210
Q ss_pred EEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeE
Q psy4869 1251 TLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1330 (2435)
Q Consensus 1251 ~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~la 1330 (2435)
.. . .+
T Consensus 293 ~~----------------------------~-----------------------------------------~~------ 297 (393)
T 1erj_A 293 DS----------------------------K-----------------------------------------TP------ 297 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc----------------------------c-----------------------------------------CC------
Confidence 00 0 00
Q ss_pred EeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEee--
Q psy4869 1331 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-- 1408 (2435)
Q Consensus 1331 vgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P-- 1408 (2435)
..+.+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|
T Consensus 298 -------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~ 364 (393)
T 1erj_A 298 -------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364 (393)
T ss_dssp ----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred -------------CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCc
Confidence 01123345668899999999999999999999999999999999999999999999999999986
Q ss_pred ----CCCEEEEEeCCCcEEEEECCC
Q psy4869 1409 ----KTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1409 ----~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++++|+|||.||.|+||++..
T Consensus 365 ~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 365 SLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp TTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999864
No 82
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3e-32 Score=359.39 Aligned_cols=321 Identities=29% Similarity=0.576 Sum_probs=284.8
Q ss_pred CCeEEEecCCCCCE-EEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcE
Q psy4869 107 TDVISTFTGHKSAI-TVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFV 185 (2435)
Q Consensus 107 ~~~~~~l~gH~~~V-~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I 185 (2435)
......+.||.+.| .++++ +|++||+|+.||.|++||+.+++.+..+.+|.+.|.++.|+ +.+|++++.||+|
T Consensus 108 ~~~~~~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i 181 (445)
T 2ovr_B 108 LKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTL 181 (445)
T ss_dssp CCCCEEEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCE
T ss_pred cceeEEecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeE
Confidence 34567889999864 66555 58999999999999999999999999999999999999996 3489999999999
Q ss_pred EEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceee
Q psy4869 186 KIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVS 265 (2435)
Q Consensus 186 ~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 265 (2435)
++||+++++++.++.+|...|.+++|. ++.+++|+.||+|++||+++++.
T Consensus 182 ~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~---------------------------- 231 (445)
T 2ovr_B 182 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC---------------------------- 231 (445)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE----------------------------
T ss_pred EEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE----------------------------
Confidence 999999999999999999999999985 67899999999999999874310
Q ss_pred eEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccc
Q psy4869 266 KIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDV 345 (2435)
Q Consensus 266 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~ 345 (2435)
T Consensus 232 -------------------------------------------------------------------------------- 231 (445)
T 2ovr_B 232 -------------------------------------------------------------------------------- 231 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC
Q psy4869 346 GRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST 425 (2435)
Q Consensus 346 ~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~ 425 (2435)
...+.+|...|.+++| ++.+|++|+.||.|++||+... .....+.+|...|.+++| ++.+|++++.
T Consensus 232 ---------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 297 (445)
T 2ovr_B 232 ---------LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSL 297 (445)
T ss_dssp ---------EEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEET
T ss_pred ---------EEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeC
Confidence 1124578889999999 7899999999999999998765 355677899999999999 7889999999
Q ss_pred CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec----CcccEEEEEECCCC
Q psy4869 426 DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN----NTYQVTSVAFNDTA 501 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~----~~~~v~sv~~sp~g 501 (2435)
|+.|++||+++++.+..+.+|...+.++.+. +.++++++.|+.|++||+++++.+..+. +...|.+++|+ +
T Consensus 298 d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 372 (445)
T 2ovr_B 298 DTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K 372 (445)
T ss_dssp TSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S
T ss_pred CCeEEEEECCCCCEEEEEcCCcccEEEEEEe---CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C
Confidence 9999999999999999999999988887764 2478999999999999999998888774 67789999995 6
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEE-----ecCCCCEEEEEEcCCCCEEEEEECCCc----EEEEEcCC
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKL-----RGHSDTVTGLSLSPDGSYILSNAMDNT----VRIWDIRP 562 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l-----~~h~~~V~~i~~spdg~~las~s~Dg~----I~lWdl~~ 562 (2435)
++|++|+.||.|++||+++++.+..+ .+|.+.|.+++|+|++.++++|+.||+ |.+||++.
T Consensus 373 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 89999999999999999999999888 478899999999999999999999998 99999973
No 83
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=344.27 Aligned_cols=292 Identities=19% Similarity=0.324 Sum_probs=237.7
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEe-eC-CCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVM-SG-HTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l-~~-h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
....+.+|.+.|.+++|+|+ +||+|+.|+.|++||+.... .....+ .+ |.+.|.+++|+|++++|++++.|+.|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34578899999999999987 99999999999999997542 333444 34 999999999999999999999999999
Q ss_pred EEECCC-------CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC----cceEee-cCcccEEEEEEC
Q psy4869 431 VWDLEK-------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK----NQAVSM-NNTYQVTSVAFN 498 (2435)
Q Consensus 431 vwd~~t-------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~----~~~~~~-~~~~~v~sv~~s 498 (2435)
+||++. .+.+..+.+|...|.+++|+|++ .+|++|+.|++|++||++.. +.+..+ .|...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 999853 35677889999999999999987 57889999999999999532 233334 577899999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCC--cEEEEEecCCCCEEEEEEcCC--CCEEEEEECCCcEEEEEcCCCCCCC----ceE
Q psy4869 499 DTAECVLTGGIDNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPD--GSYILSNAMDNTVRIWDIRPYVPGE----RCV 570 (2435)
Q Consensus 499 p~g~~l~sgs~dg~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spd--g~~las~s~Dg~I~lWdl~~~~~~~----~~v 570 (2435)
|++++|++|+.|+.|++||.+++ +++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||++...... .+.
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 242 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCE 242 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEe
Confidence 99999999999999999999876 678889999999999999998 7799999999999999997432111 233
Q ss_pred EEEeC-cccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc--EEEE-ecCCCC-CeeEEEEcC--CCCEEEEEEC
Q psy4869 571 KVMSG-HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR--IAYK-LPGHNG-SVNDVQFHP--KEPIIMSASS 643 (2435)
Q Consensus 571 ~~~~~-h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~--~~~~-l~~h~~-~V~~l~fsp--d~~~Lasgs~ 643 (2435)
..+.+ | ...|.+++|++++ +|++|+.||.|+|||..+++ .+.. +.+|.. .|++++|+| ++++|++|+.
T Consensus 243 ~~~~~~h----~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 243 AILPDVH----KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EECCSCC----SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEET
T ss_pred eeccccc----ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecC
Confidence 33433 3 3579999999765 89999999999999998874 3333 467887 899999999 6889999999
Q ss_pred CCcEEEecCC
Q psy4869 644 DKTIYLGESP 653 (2435)
Q Consensus 644 Dg~I~vWd~~ 653 (2435)
||+|++|+++
T Consensus 318 Dg~v~~W~~~ 327 (330)
T 2hes_X 318 DGIVNFWSLE 327 (330)
T ss_dssp TSEEEEEEC-
T ss_pred CCcEEEEEec
Confidence 9999999985
No 84
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=380.89 Aligned_cols=358 Identities=11% Similarity=0.069 Sum_probs=255.5
Q ss_pred CCCCEEEEEEcCCC---------CEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 116 HKSAITVIQYDPLG---------HRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 116 H~~~V~~l~f~p~g---------~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
+.+.|.+|+|+|++ ++||+|+.++.. -..+ ++..+|++++.|++|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~--~~~~~laS~s~D~tI~ 186 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLN--EHLEMFDKEKHSSCIQ 186 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------------CEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccc--hhhhhhccCCCCceEE
Confidence 67899999999987 799999877531 0112 4556789999999999
Q ss_pred EEeccCCccc----cccccccceEEEEEEEeC------CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecc
Q psy4869 187 IWDADTGDCF----KTMAAHLTEVWGVCVMRE------DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLS 256 (2435)
Q Consensus 187 iWd~~tg~~~----~~~~~h~~~V~~l~~~p~------~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~ 256 (2435)
|||+.++++. .++.+|.+.|+.++|+|+ +.+|++++.||+|++||+..+......
T Consensus 187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~--------------- 251 (524)
T 2j04_B 187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV--------------- 251 (524)
T ss_dssp EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE---------------
T ss_pred EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc---------------
Confidence 9999988753 345678899999999996 578999999999999998753210000
Q ss_pred cCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccce
Q psy4869 257 EDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNY 336 (2435)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~ 336 (2435)
. .
T Consensus 252 ----------------------------~--------------------------------------------~------ 253 (524)
T 2j04_B 252 ----------------------------F--------------------------------------------K------ 253 (524)
T ss_dssp ----------------------------E--------------------------------------------E------
T ss_pred ----------------------------c--------------------------------------------e------
Confidence 0 0
Q ss_pred eeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEE--EEc
Q psy4869 337 KVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDL--KFS 414 (2435)
Q Consensus 337 ~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l--~~s 414 (2435)
....|...+.+|.+.|++++|+++ .+|++|+.||.|++||+.........+.+|.+.|.+| +|+
T Consensus 254 -------------~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 254 -------------MCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp -------------CCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECC
T ss_pred -------------eecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcC
Confidence 001233467799999999999986 4899999999999999986544455688999999999 567
Q ss_pred cCC-CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 415 TDG-CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 415 ~dg-~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
+++ .+|++++.|++|+|||+++++.+..+.+|.. ...|.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~----------------------------------------~~~v~ 359 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR----------------------------------------GSNLV 359 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS----------------------------------------CCSCC
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccc----------------------------------------cCccc
Confidence 887 8999999999999999987765444443321 01255
Q ss_pred EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEE
Q psy4869 494 SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVM 573 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~ 573 (2435)
+++|+|+++.+++++.|+.|++||++++.++..+.+|.+.|++|+|+|+|++|++|+.|++|++||+... .+...
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-----~~~~~ 434 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-----LLHGI 434 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-----TTTCC
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-----hcccc
Confidence 7889999999999999999999999999988889999999999999999999999999999999998632 11111
Q ss_pred eCcc-cccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CCcEEEEecCCCCCeeEEEEcCCCC---EEEEEECCCcEE
Q psy4869 574 SGHQ-HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TRRIAYKLPGHNGSVNDVQFHPKEP---IIMSASSDKTIY 648 (2435)
Q Consensus 574 ~~h~-~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~~~~~~l~~h~~~V~~l~fspd~~---~Lasgs~Dg~I~ 648 (2435)
..+. ......+..++|+|+|+.+.. .. .+.+|+.. ++..+..+.+|...|++|+|+|+++ .||+|+.||.|+
T Consensus 435 ~~~~~~~~~~~v~~v~~sp~g~~~~~-~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vr 511 (524)
T 2j04_B 435 KNSSATQKSLRLWKWDYSIKDDKYRI-DS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLT 511 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEE-CC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEE
T ss_pred ccCccceeeeEEEEeccCCCCCeEEc-cC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEE
Confidence 1000 001124568999999985532 22 23344443 5677888999999999999999965 999999999999
Q ss_pred EecCC
Q psy4869 649 LGESP 653 (2435)
Q Consensus 649 vWd~~ 653 (2435)
||++.
T Consensus 512 lw~l~ 516 (524)
T 2j04_B 512 LEYLS 516 (524)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99986
No 85
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=9.6e-32 Score=356.41 Aligned_cols=346 Identities=22% Similarity=0.435 Sum_probs=286.5
Q ss_pred CeEEEecCCCCC-EEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 108 DVISTFTGHKSA-ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 108 ~~~~~l~gH~~~-V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
.....+.+|... +.+++|+ +++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+++ + +|++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG--G-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECST--T-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC--C-EEEEEeCCCCEE
Confidence 356688999887 5777774 689999999999999999999999999999999999999753 3 899999999999
Q ss_pred EEeccCCccccccccccceEEEEEEEe--CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 187 IWDADTGDCFKTMAAHLTEVWGVCVMR--EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 187 iWd~~tg~~~~~~~~h~~~V~~l~~~p--~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
+||+++++++..+.+|.+.|.+++|.+ ++.++++++.|++|++||++........... ...
T Consensus 187 vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~---------------~~~-- 249 (464)
T 3v7d_B 187 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE---------------HDY-- 249 (464)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---------------------CCS--
T ss_pred EEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccccc---------------CCc--
Confidence 999999999999999999999999995 6788999999999999999865422110000 000
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
. .......
T Consensus 250 ------------------~-------------------------------------------~~~~~~~----------- 257 (464)
T 3v7d_B 250 ------------------P-------------------------------------------LVFHTPE----------- 257 (464)
T ss_dssp ------------------S-------------------------------------------EEESCGG-----------
T ss_pred ------------------c-------------------------------------------eEeeccC-----------
Confidence 0 0000000
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS 424 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s 424 (2435)
........+.+|...|.++ ++++++|++|+.||.|++||+... ..+..+.+|...|.+++|++++++|++++
T Consensus 258 -----~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 258 -----ENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp -----GCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred -----CCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 0001134577899999987 567999999999999999999765 35567889999999999999999999999
Q ss_pred CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 425 TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
.|+.|++||+++++.+..+.+|...|.++.+.+ .++++++.|+.|++||++++.......+...+..++|+++++++
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l 406 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD---KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 406 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEE
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC---CEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEE
Confidence 999999999999999999999999999998863 58999999999999999998888888888888999999999999
Q ss_pred EEEecCCeEEEEECCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
++|+ ||.|++||+++++.+.. +.+|.+.|.+++|+ +...+++++.|+.+.+|-+
T Consensus 407 ~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 407 VSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 9998 89999999999999986 67899999999997 3445555667776665543
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-31 Score=337.55 Aligned_cols=287 Identities=22% Similarity=0.390 Sum_probs=251.6
Q ss_pred eEecccCCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
.+|+||.+.|++|+|+|+ +++|++|+.||.|+|||+... ......+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~ 111 (340)
T 4aow_A 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111 (340)
T ss_dssp EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccce
Confidence 468999999999999997 689999999999999998753 234567889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCC--CEEEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTA--ECVLT 506 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g--~~l~s 506 (2435)
+|+...+........+...+..+.+.+.+ .++++++.|+.+++||.......... .+...+.+++|++++ .++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 190 (340)
T 4aow_A 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS 190 (340)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEE
T ss_pred EEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEE
Confidence 99999998888888888888888877776 56789999999999999866554433 467789999998764 57889
Q ss_pred EecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 507 GGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 507 gs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
++.|+.|++||+++++.+..+.+|.+.|++|+|+|++++|++++.|++|++||++. .+++..+..+. .+..
T Consensus 191 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~----~~~~~~~~~~~-----~v~~ 261 (340)
T 4aow_A 191 CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE----GKHLYTLDGGD-----IINA 261 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT----TEEEEEEECSS-----CEEE
T ss_pred EcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc----CceeeeecCCc-----eEEe
Confidence 99999999999999999999999999999999999999999999999999999983 56677766553 6889
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEec---------CCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLP---------GHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---------~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.|+|++.++ +++.|+.|++||++.+..+..+. +|...|++++|+|++++|++|+.||.|++||+.
T Consensus 262 ~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 262 LCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred eecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 9999988655 55579999999999887776653 688999999999999999999999999999986
No 87
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=339.50 Aligned_cols=300 Identities=23% Similarity=0.322 Sum_probs=237.7
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC--ceeEEE-ec-cCCCEEEEEEccCCCEEEEEeCCC
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG--DCHKSL-LA-HEDSVTGVTFVPKTHYFFTTSKDG 1146 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~--~~~~~l-~~-h~~~V~~v~fsp~~~~l~s~s~Dg 1146 (2435)
..+++..+.+|..+|.+++|+++ +|++|+.|+.|++||+..+ +.+..+ .. |...|.+++|+|++++|++++.|+
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 45678889999999999999987 9999999999999999875 345555 34 999999999999999999999999
Q ss_pred cEEEEeCCCccee-EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC----ceeeEeeccCCCEEEEE
Q psy4869 1147 RVKQWDADNFERI-VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG----DCHKSLLAHEDSVTGVT 1221 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~-~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~----~~~~~~~~h~~~V~~i~ 1221 (2435)
.|++||+...... ........+.+|...|.+++|+|++++|++|+.|+.|++||++.. +++..+.+|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 9999998643210 011123345689999999999999999999999999999999432 45677889999999999
Q ss_pred EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccc
Q psy4869 1222 FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1301 (2435)
Q Consensus 1222 ~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~ 1301 (2435)
|+|++++|++++.|+.|++||.+...... +..
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~------------------------~~~------------------------ 192 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWEC------------------------VAV------------------------ 192 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEE------------------------EEE------------------------
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeE------------------------EEE------------------------
Confidence 99999999999999999999975431100 000
Q ss_pred eeeeeecccccccccEEEEEecCC--cceeEEeecCCeEEEEEcccc--------eEEEEecC-CCCCeEEEEEecCCCE
Q psy4869 1302 VLSLLHTRTLKLEEQVLCARVSPD--SKLLAVSLLDTTVKIFFLDTF--------KFFISLYG-HKLPVLSLDMSYDSTL 1370 (2435)
Q Consensus 1302 ~~~~~~~~~~~~~~~i~~ia~spd--g~~lavgs~dG~V~v~d~~~~--------k~i~~~~~-h~~~V~~la~spdg~~ 1370 (2435)
...+...|.+++|+|+ +.+|++|+.||.|++||+... .....+.. |...|.+++|++++ +
T Consensus 193 --------~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~ 263 (330)
T 2hes_X 193 --------LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263 (330)
T ss_dssp --------ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-C
T ss_pred --------ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-E
Confidence 0123467899999999 778999999999999999764 44555655 89999999999765 8
Q ss_pred EEEEeCCCcEEEEeCCCCc--eEE-Eeccccc-ceEEEEEee--CCCEEEEEeCCCcEEEEECCC
Q psy4869 1371 IATGSGDRTVKVWGLDYGD--CHK-SLLAHED-SVTGVTFVP--KTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1371 L~sGg~Dg~V~iwdl~~gk--~~~-~~~~h~~-~V~~laf~P--~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
|++|+.||.|++|+...++ ++. ...+|.. .|++++|+| ++.+|+|||.||.|+|||+..
T Consensus 264 l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999999999999998873 333 3467876 999999999 688999999999999999864
No 88
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=100.00 E-value=4e-35 Score=354.18 Aligned_cols=190 Identities=22% Similarity=0.358 Sum_probs=138.0
Q ss_pred ccccCccCCCCCCCcc--cccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCC
Q psy4869 2177 TFDAREEWPQCKDVIG--KVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKG 2254 (2435)
Q Consensus 2177 ~~Dwr~~~~~~~~~v~--~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~ 2254 (2435)
-.|||+ ++ |+++ ||||||.||||| |||++++||++++|+++.
T Consensus 10 ~~dWR~-~~---~~~~it~VkdQg~CGSCW--------------------------------AFaa~~alE~~~~i~~~~ 53 (265)
T 2wbf_X 10 CNRLKD-EN---NCISNLQVEDQGNCDTSW--------------------------------IFASKYHLETIRCMKGYE 53 (265)
T ss_dssp BCGGGC-TT---STGGGSCCCBCTTSSCHH--------------------------------HHHHHHHHHHHHHHTTCC
T ss_pred HHhhcc-CC---CCCCCCCCcCCCCChhHH--------------------------------HHHHHHHHHHHHHHhcCC
Confidence 589998 22 4566 999999999999 999999999999998776
Q ss_pred CcCccCCccceecccCCCCCCCCCCCCCCCCCCChh-hHHHHHHHcC-ccCCCcccCCCCC--cccc-------------
Q psy4869 2255 QVKPILSPQHLICSCTNCTRMHTKTPMSMCMGGDSA-AAWMYWINAG-LVDGGDYGTHDVS--MGRY------------- 2317 (2435)
Q Consensus 2255 ~~~~~lS~q~l~~~~~~c~~~~~~~~~~gC~gg~~~-~a~~~~~~~G-i~~~~~y~~~~~~--~~~~------------- 2317 (2435)
++. ||+|+|+ ||... +++.||+||++. .+++|++++| +++|.+|||.... ..+.
T Consensus 54 ~~~--LS~Q~lv----dC~~~---~~~~GC~GG~~~~~~~~~i~~~Ggi~~e~~yPY~~~~~~~~C~~~~~~~~~~~~~~ 124 (265)
T 2wbf_X 54 PTK--ISALYVA----NCYKG---EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNG 124 (265)
T ss_dssp CCC--BCHHHHH----HCCSS---SCCCTTTCCCCHHHHHHHHHHHCCCCBTTTSCCCGGGTTSCCCCCCTTCCCTTTTC
T ss_pred CCC--cCHHHHH----Hhhcc---cCCCCCCCCCCHHHHHHHHHHcCCCCCccccCCcCCCCCCCCCCcccccccccccc
Confidence 665 9999999 88742 246799999754 5567787887 8999999996421 1000
Q ss_pred -------------c-------------------cCcccceeecccCCcccc-----cce-eeEEEE-ecCCCcCcccceE
Q psy4869 2318 -------------I-------------------EGIGHAASVMGSSNPEVN-----NFE-KVIRLY-SCEGSINPRYIHS 2358 (2435)
Q Consensus 2318 -------------~-------------------~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~-~~~~~~~~~~~Ha 2358 (2435)
+ ..++..+...||+.+.++ .|+ .+..++ .|+. ..++||
T Consensus 125 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~v~i~~~~f~~y~~~g~~~~~~c~~---~~~~Ha 201 (265)
T 2wbf_X 125 KILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGD---DTADHA 201 (265)
T ss_dssp EECCCCCSSSTTCCSSEEEEEGGGGTTCHHHHHHHHHHHHHHHSCEEEEECGGGGCSGGGGSSSEECCCCC---SCCCEE
T ss_pred ccccccCCCceeecCCceEeeccccccchhhHHHHHHHHHHhcCCEEEEEEcccccccccCCcEEcCCCCC---CcCCEE
Confidence 0 001111122355544433 232 122222 2432 357899
Q ss_pred EEEEEeccC--CCC--cceEEEEccCCCCcCCCceEEEEe-eCcccccccceeEEEeecCc
Q psy4869 2359 VKIIGWGKS--SQN--EPYWLCTNSYNQGWGEQGLFKIRR-GVNMCSIEDSVMAGEAKLEG 2414 (2435)
Q Consensus 2359 v~iVGyg~~--~~g--~~yWiikNSWG~~WG~~Gy~~i~r-~~n~cgi~~~~~~~~~~~~~ 2414 (2435)
|+|||||++ ++| ++|||||||||+.|||+|||||+| +.|+||||..+.++++++.-
T Consensus 202 V~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~~~~~~~~~ 262 (265)
T 2wbf_X 202 VNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNVDL 262 (265)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCEEEEECEEC
T ss_pred EEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEEEEeccccC
Confidence 999999974 355 689999999999999999999986 67999999999999888653
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.1e-31 Score=339.13 Aligned_cols=311 Identities=23% Similarity=0.433 Sum_probs=255.8
Q ss_pred EEEEeCCCCEEE--EEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc-----cccccccc
Q psy4869 132 LATGSKDTDIVL--WDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD-----CFKTMAAH 202 (2435)
Q Consensus 132 laSgs~Dg~I~i--Wd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~-----~~~~~~~h 202 (2435)
-++|.+.|+..+ +...+. ....+|+||.+.|++|+|+|+ ++.+|+|||.|++|+|||+.+++ +.+.+.+|
T Consensus 7 ~~~g~d~g~~~~~~~~~~~~~~~l~~tL~GH~~~V~~v~~sp~-~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h 85 (340)
T 4aow_A 7 HSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQ-FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85 (340)
T ss_dssp -------------------CEEEEEEEECCCSSCEEEEEECTT-CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC
T ss_pred cccccCCCCccEEEEEccCCceEEEEEECCccCCEEEEEEeCC-CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC
Confidence 356666665433 333333 456789999999999999874 35689999999999999998765 35677899
Q ss_pred cceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCc
Q psy4869 203 LTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGK 282 (2435)
Q Consensus 203 ~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~ 282 (2435)
...|.+++|+|++++|++++.|+.|++|+......
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~--------------------------------------------- 120 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------------------------------------------- 120 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE---------------------------------------------
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccce---------------------------------------------
Confidence 99999999999999999999999999999764210
Q ss_pred cceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccC
Q psy4869 283 KKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHG 362 (2435)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~ 362 (2435)
......|.
T Consensus 121 ------------------------------------------------------------------------~~~~~~~~ 128 (340)
T 4aow_A 121 ------------------------------------------------------------------------TRRFVGHT 128 (340)
T ss_dssp ------------------------------------------------------------------------EEEEECCS
T ss_pred ------------------------------------------------------------------------eeeecCCC
Confidence 00122345
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCceE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
..+..+.+++++.+|++|+.|+.+++||............+|...|..++|++++ ..+++++.|+.|++||+++++.+
T Consensus 129 ~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 129 KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 5677788999999999999999999999987766667778899999999999864 57889999999999999999999
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCC
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT 520 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s 520 (2435)
..+.+|...|.+++|+|++ .+|++|+.|+.|++||+++.+.+..+.+...+.+++|+|++.++ +++.|+.|++||+++
T Consensus 209 ~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 209 TNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEG 286 (340)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTT
T ss_pred eEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCC
Confidence 9999999999999999987 57889999999999999999999999888899999999987654 566799999999999
Q ss_pred CcEEEEE---------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 521 NSVVQKL---------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 521 ~~~v~~l---------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
+..+..+ .+|...|++++|+|||++|++|+.||+|+|||+++
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 8877665 36889999999999999999999999999999974
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-33 Score=373.59 Aligned_cols=340 Identities=8% Similarity=0.067 Sum_probs=249.9
Q ss_pred cceEEEeecCCC---------CeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEc
Q psy4869 76 HEVCQLSPNHDS---------SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV 146 (2435)
Q Consensus 76 ~~v~~~~~~~d~---------~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~ 146 (2435)
..|.+++|+|++ ++||+|..++.. ...+|++..||+|+.|++|+|||+
T Consensus 134 ~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~~~laS~s~D~tI~iWd~ 190 (524)
T 2j04_B 134 GLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHLEMFDKEKHSSCIQIFKM 190 (524)
T ss_dssp C--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------CEEEEEEEE
T ss_pred CceeEEEecccCCCCccCcCCeEEEEEEecccC-----------------------CccchhhhhhccCCCCceEEEEEc
Confidence 356688999887 789999765420 114789999999999999999999
Q ss_pred cCCee----EEEEecCCCcEEEEEEeec----CCCcEEEEEeCCCcEEEEeccCCccc-----------cccccccceEE
Q psy4869 147 VAECG----LHRLSGHKGVITDIRFMSQ----PGHHFVVSSAKDTFVKIWDADTGDCF-----------KTMAAHLTEVW 207 (2435)
Q Consensus 147 ~~~~~----~~~l~gH~~~V~~v~~~~~----~~~~~l~S~s~Dg~I~iWd~~tg~~~-----------~~~~~h~~~V~ 207 (2435)
.+.+. ..++.+|.+.|.+|+|+|. +++.+|++++.||+|+|||+.++.+. .++.+|...|.
T Consensus 191 ~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~ 270 (524)
T 2j04_B 191 NTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT 270 (524)
T ss_dssp ETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE
T ss_pred cCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE
Confidence 77653 2457789999999999986 23568999999999999999877532 36688999999
Q ss_pred EEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEE
Q psy4869 208 GVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQ 287 (2435)
Q Consensus 208 ~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~ 287 (2435)
+++|+++ ..|++|+.||+|++||++++.
T Consensus 271 sv~~s~~-~~lasgs~DgtV~lWD~~~~~--------------------------------------------------- 298 (524)
T 2j04_B 271 TFDFLSP-TTVVCGFKNGFVAEFDLTDPE--------------------------------------------------- 298 (524)
T ss_dssp EEEESSS-SEEEEEETTSEEEEEETTBCS---------------------------------------------------
T ss_pred EEEecCC-CeEEEEeCCCEEEEEECCCCC---------------------------------------------------
Confidence 9999976 489999999999999987321
Q ss_pred EEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEE
Q psy4869 288 VFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFC 367 (2435)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~ 367 (2435)
.|...+.+|.+.|.+
T Consensus 299 -----------------------------------------------------------------~~~~~~~~H~~~V~s 313 (524)
T 2j04_B 299 -----------------------------------------------------------------VPSFYDQVHDSYILS 313 (524)
T ss_dssp -----------------------------------------------------------------SCSEEEECSSSCEEE
T ss_pred -----------------------------------------------------------------CceEEeecccccEEE
Confidence 011235689999999
Q ss_pred E--EECCCC-CEEEEEeCCCeEEEEecCCceeeEEEeeCCC--CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 368 S--KYHPDG-QYIASSGYDRQIFIWSVYGECENIGVMSGHT--GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 368 l--~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~--~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
+ .|+|+| ++||+|+.|++|+|||++.... ...+.+|. ..|.+++|+|+++.|++++.|++|++||++++..+..
T Consensus 314 v~~~~s~~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~ 392 (524)
T 2j04_B 314 VSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP 392 (524)
T ss_dssp EEEECCTTSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred EEEEcCCCCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee
Confidence 9 578888 8999999999999999976432 22344554 3589999999999999999999999999999998888
Q ss_pred EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee------cCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 443 MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM------NNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 443 l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
+.+|...|++++|+|+++ +|++|+.|++|++||+..+. .... .....+.+++|+|+++.+. .. +.+.+|
T Consensus 393 l~gH~~~V~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~~~-~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~--~~~~~~ 467 (524)
T 2j04_B 393 LVSRETTITAIGVSRLHP-MVLAGSADGSLIITNAARRL-LHGIKNSSATQKSLRLWKWDYSIKDDKYR-ID--SSYEVY 467 (524)
T ss_dssp EEECSSCEEEEECCSSCC-BCEEEETTTEEECCBSCSST-TTCC------CCCCEEEECBCCSSSCEEE-EC--CCCCCC
T ss_pred eecCCCceEEEEeCCCCC-eEEEEECCCEEEEEechHhh-ccccccCccceeeeEEEEeccCCCCCeEE-cc--CCceec
Confidence 999999999999999885 57899999999999986542 2211 1122577999999998552 22 223344
Q ss_pred ECC-CCcEEEEEecCCCCEEEEEEcCCCC---EEEEEECCCcEEEEEcC
Q psy4869 517 DLR-TNSVVQKLRGHSDTVTGLSLSPDGS---YILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 517 D~~-s~~~v~~l~~h~~~V~~i~~spdg~---~las~s~Dg~I~lWdl~ 561 (2435)
+.. ++..+..+.+|...|.+|+|+|++. .+|+|+.||+|+||+++
T Consensus 468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp C-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 433 5667888999999999999999954 99999999999999997
No 91
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-34 Score=369.95 Aligned_cols=329 Identities=17% Similarity=0.156 Sum_probs=281.9
Q ss_pred CCEEEEEEcCCCC-EEEEE----------ECCCcEEEEEcCCCe---EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy4869 1041 EQVLCARVSPDSK-LLAVS----------LLDTTVKIFFLDTFK---FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1106 (2435)
Q Consensus 1041 ~~v~~l~~spdg~-~Lavg----------~~dg~V~i~d~~~~~---~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I 1106 (2435)
..|.+++|+|+|+ +|++| +.|+.|++|++.+++ .+..+ .|...|.+++|+|++++|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 3567899999997 99999 789999999998765 33333 588999999999999999999999999
Q ss_pred EEEEccC----CceeEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCcc------eeEEEEEEEeecccccCe
Q psy4869 1107 KVWGLDY----GDCHKSLLAHEDSVTGVTFVPK-THYFFTTSKDGRVKQWDADNFE------RIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1107 ~vWd~~t----~~~~~~l~~h~~~V~~v~fsp~-~~~l~s~s~Dg~V~iwD~~~~~------~~~~~~~~~~~~~h~~~V 1175 (2435)
++||+.. .+.+..+..|...|.+++|+|+ +++|++++.|+.|++||+.+.. ....+ .....|...|
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~v 168 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTP---GQSMSSVDEV 168 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCC---CCSCCSSCCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccc---ccccCCCCCe
Confidence 9999987 4578888899999999999998 8899999999999999998876 22221 1235788999
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEEccCCceeeEeecc------CCCEEEEEEeeCC-CEEEEEECCC---cEEEEECC
Q psy4869 1176 LSLDMSYD-STLIATGSGDRTVKVWGLDYGDCHKSLLAH------EDSVTGVTFVPKT-HYFFTTSKDG---RVKQWDAD 1244 (2435)
Q Consensus 1176 ~~l~~s~d-g~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h------~~~V~~i~~spd~-~~lvsgs~Dg---~I~vwD~~ 1244 (2435)
.+++|+++ +.+|++++.|+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999998 789999999999999999999988888776 7899999999986 6899999998 99999987
Q ss_pred CCce-EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec
Q psy4869 1245 NFER-IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1323 (2435)
Q Consensus 1245 ~~~~-v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s 1323 (2435)
.... +..+ ...+...+.+++|+
T Consensus 249 ~~~~~~~~~---------------------------------------------------------~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 249 NANTPLQTL---------------------------------------------------------NQGHQKGILSLDWC 271 (416)
T ss_dssp STTSCSBCC---------------------------------------------------------CSCCSSCEEEEEEC
T ss_pred CCCCCcEEe---------------------------------------------------------ecCccCceeEEEeC
Confidence 6421 0000 00235679999999
Q ss_pred C-CcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEeCCCCceEEEec------
Q psy4869 1324 P-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLL------ 1395 (2435)
Q Consensus 1324 p-dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg-~~L~sGg~Dg~V~iwdl~~gk~~~~~~------ 1395 (2435)
| ++++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++|++|+.|+.|++|++..++......
T Consensus 272 ~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~ 351 (416)
T 2pm9_A 272 HQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQ 351 (416)
T ss_dssp SSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------
T ss_pred CCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccc
Confidence 9 99999999999999999999999999999999999999999999 899999999999999998875422111
Q ss_pred -----------------------------ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1396 -----------------------------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1396 -----------------------------~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.|..+|++++|+|++.+|++++.||.|+|||+.+.
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 352 QESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16778999999999999999999999999999864
No 92
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-33 Score=363.09 Aligned_cols=368 Identities=13% Similarity=0.159 Sum_probs=278.9
Q ss_pred eecCCCCeEEEEEcCCeEEEEECCCCCeEEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccC---Ce---eEE
Q psy4869 82 SPNHDSSQLAVAYTNGSLKTFSLDTTDVISTF-TGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVA---EC---GLH 153 (2435)
Q Consensus 82 ~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l-~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~---~~---~~~ 153 (2435)
.+++++..++.+. .|+ .+++.+..+ .+|.+.|++++|+| ++.+||+|+.||.|+|||+.. .. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4677777777654 377 456788888 99999999999999 999999999999999999876 32 233
Q ss_pred EEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEecc---CCcccccccc------------ccceEEEEE--EEeCCC
Q psy4869 154 RLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDAD---TGDCFKTMAA------------HLTEVWGVC--VMREDS 216 (2435)
Q Consensus 154 ~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~---tg~~~~~~~~------------h~~~V~~l~--~~p~~~ 216 (2435)
.+ +|.+.|.+++|+| ++.+|++++.||+|++||++ +++.+..+.+ +...+.++. +++++.
T Consensus 107 ~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (437)
T 3gre_A 107 TY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS 183 (437)
T ss_dssp EE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE
T ss_pred ec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC
Confidence 33 6999999999985 56789999999999999995 6666554433 344555555 446788
Q ss_pred eEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeec
Q psy4869 217 YLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCIS 296 (2435)
Q Consensus 217 ~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 296 (2435)
+|++++.|+.|++||++.++.+
T Consensus 184 ~l~~~~~d~~i~iwd~~~~~~~---------------------------------------------------------- 205 (437)
T 3gre_A 184 LLVALTNLSRVIIFDIRTLERL---------------------------------------------------------- 205 (437)
T ss_dssp EEEEEETTSEEEEEETTTCCEE----------------------------------------------------------
T ss_pred EEEEEeCCCeEEEEeCCCCeee----------------------------------------------------------
Confidence 9999999999999998753210
Q ss_pred ccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecc--cCCcEEEEEECCCC
Q psy4869 297 SITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEG--HGGEIFCSKYHPDG 374 (2435)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~g--H~~~V~~l~fspdg 374 (2435)
..+.+ |.+.|++++|+|++
T Consensus 206 -----------------------------------------------------------~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 206 -----------------------------------------------------------QIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp -----------------------------------------------------------EEEECCGGGCCEEEEEECTTS
T ss_pred -----------------------------------------------------------EEEccCCCCCceEEEEECCCC
Confidence 11223 78899999999999
Q ss_pred CEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEEEcc----CCCEEEEEeCCCeEEEEECCCCceEEEEeccCcc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLKFST----DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTF 449 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~~s~----dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~ 449 (2435)
++|++|+.||.|++||++... .+..+. .|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+.+|...
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC
T ss_pred CEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 999999999999999998753 344443 7888999997664 6779999999999999999999999999999998
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
+..+.|.+.+..+ .+.. +.+
T Consensus 306 ~~~~~~~~~~~~l-----~~~~-------------------------------------------------------~~~ 325 (437)
T 3gre_A 306 PSMEHFLPIEKGL-----EELN-------------------------------------------------------FCG 325 (437)
T ss_dssp CCGGGGSCBCSSG-----GGCC-------------------------------------------------------CCC
T ss_pred Cccceeccccccc-----ccce-------------------------------------------------------ecc
Confidence 8888888765322 0000 333
Q ss_pred --CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 530 --HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 530 --h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
|...|.+++|+ ++++|++++.|+.|++||++ ..++...+.+|... ...+....++++..+++..
T Consensus 326 ~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------- 391 (437)
T 3gre_A 326 IRSLNALSTISVS-NDKILLTDEATSSIVMFSLN----ELSSSKAVISPSRF-SDVFIPTQVTANLTMLLRK-------- 391 (437)
T ss_dssp CCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT----CGGGCEEEECC--C-CCEEEEEEEETTEEEEEEE--------
T ss_pred cccCCceEEEEEC-CceEEEecCCCCeEEEEECC----CcccceEEeccccc-CceEEEEEeecceEEEEEe--------
Confidence 78889999999 77889999999999999988 35666777766432 2345566677776666555
Q ss_pred EECCCCcEEEEecCCCCCeeEEEEcCC--CCEEEEEECCCcEEEec
Q psy4869 608 WDTTTRRIAYKLPGHNGSVNDVQFHPK--EPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~~~V~~l~fspd--~~~Lasgs~Dg~I~vWd 651 (2435)
|+...+........|...|++++|+++ +.+|++|+.||.|++|+
T Consensus 392 ~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 392 MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 344444555566679999999999998 77999999999999995
No 93
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.3e-32 Score=359.35 Aligned_cols=344 Identities=19% Similarity=0.234 Sum_probs=279.1
Q ss_pred EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecC
Q psy4869 79 CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGH 158 (2435)
Q Consensus 79 ~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH 158 (2435)
..++|+|++++|++++.||.+++||+.+++....+.+| ..+....|++++++||+|+.|+.|+|||+.+++....+.+|
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 138 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAH 138 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccc
Confidence 46889999999999999999999999988777777777 55566688999999999999999999999999888888999
Q ss_pred CCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 159 KGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 159 ~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
.+.|.+++|+| ++.+|++++.|++|++||+++++++..+.+|...|.+++|+|++++|++++.|++|++||+++++.+
T Consensus 139 ~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999985 4568999999999999999999999999999999999999999999999999999999999865322
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
...... ......+..
T Consensus 217 ~~~~~~-------------~~~~~~v~~---------------------------------------------------- 231 (420)
T 3vl1_A 217 HTFNRK-------------ENPHDGVNS---------------------------------------------------- 231 (420)
T ss_dssp EEECBT-------------TBTTCCEEE----------------------------------------------------
T ss_pred EEeecC-------------CCCCCCccE----------------------------------------------------
Confidence 111000 000000000
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 398 (2435)
+.+.... .......|...|.+++|+|+|++|++|+.||.|++||+.......
T Consensus 232 --------~~~~~~~--------------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 232 --------IALFVGT--------------------DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp --------EEEEECC--------------------CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred --------EEEecCC--------------------cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 0000000 001234567788899999999999999999999999998776655
Q ss_pred EEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCc-eEEEEec-cCccccccCcccCCCeEEEEEeCCCeEEEE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQ-RIKKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVW 475 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~-~v~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vw 475 (2435)
.....|...|.+++|+|++. +|++++.||.|++||+++++ .+..+.+ |...+.++.+ +++ .++++++.|+.|++|
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~-~~l~s~~~d~~v~iw 361 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAG-ALFVSSGFDTSIKLD 361 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETT-EEEEEETTTEEEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCC-CEEEEecCCccEEEE
Confidence 55667999999999999998 99999999999999999875 4677776 5667777744 544 688999999999999
Q ss_pred eCCCCc----------ceEeecCcccEEEEEECCCCC---EEEEEecCCeEEEEECCC
Q psy4869 476 DPRKKN----------QAVSMNNTYQVTSVAFNDTAE---CVLTGGIDNDIKMWDLRT 520 (2435)
Q Consensus 476 D~~~~~----------~~~~~~~~~~v~sv~~sp~g~---~l~sgs~dg~V~lwD~~s 520 (2435)
|+.... ......+...+.+++|+|+++ .+++++.+|.+.+|++++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 362 IISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred eccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 987632 223335677899999999999 788888899999999864
No 94
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-31 Score=333.88 Aligned_cols=287 Identities=18% Similarity=0.324 Sum_probs=257.5
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEEC
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDL 434 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~ 434 (2435)
...+.+|.+.|++++|+|+|++|++|+.||.|++||+... .....+.+|.+.|.+++|+|++++|++++.|+.|++||+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 3578999999999999999999999999999999998765 355678899999999999999999999999999999999
Q ss_pred CCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEEeCCCCcceE-----------ee-cCcc--cEEEE
Q psy4869 435 EKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVWDPRKKNQAV-----------SM-NNTY--QVTSV 495 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vwD~~~~~~~~-----------~~-~~~~--~v~sv 495 (2435)
.+++.+..+. |...+.++.|.+++. .+++++.+ +.|++||++...... .+ .+.. .+.++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 9999998888 888899999999885 55667777 999999987654321 11 2333 89999
Q ss_pred EECCCCCEEEEEecCCeEEEEECCC-CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEe
Q psy4869 496 AFNDTAECVLTGGIDNDIKMWDLRT-NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMS 574 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg~V~lwD~~s-~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~ 574 (2435)
+|+|++++|++|+.||.|++||+++ ++.+..+..|...|.+++|+|++++|++++.|+.|++||++. .+.+..+.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~ 257 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST----LQVLKKYE 257 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC----Cceeeeec
Confidence 9999999999999999999999999 788999999999999999999999999999999999999984 45666665
Q ss_pred CcccccccCeEEEEEcCCCCEEEEecCCC--------------eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 575 GHQHNFEKNLLRCAWSVSGLYVTAGSADK--------------CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 575 ~h~~~~~~~i~~v~~spdg~~Lasgs~Dg--------------~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
. ...+..+.|+|+++++++++.++ .+++||..+++.+..+.+|...|++++|+|++++|++
T Consensus 258 ~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 258 T-----DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp C-----SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred C-----CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEE
Confidence 2 24789999999999999999988 8999999999999999999999999999999999999
Q ss_pred EECCCcEEEecCC
Q psy4869 641 ASSDKTIYLGESP 653 (2435)
Q Consensus 641 gs~Dg~I~vWd~~ 653 (2435)
++.||.|++|+++
T Consensus 333 ~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 333 GGEDGFIRLHHFE 345 (369)
T ss_dssp EETTSEEEEEEEC
T ss_pred EcCCCeEEEEECc
Confidence 9999999999997
No 95
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.3e-32 Score=351.70 Aligned_cols=344 Identities=14% Similarity=0.106 Sum_probs=273.4
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.+++++|+|+|++|++++.||.|++|+..+++....+..| ..+....|++++++|++|+.||.|++||+++++....+.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 3457899999999999999999999999877665555555 344555789999999999999999999999999888888
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
.|...|.+++|+|++++|++++.|+.|++||+.+++....+ .+|...|.+++|+|++++|++++.|+.|++||+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 99999999999999999999999999999999988776655 489999999999999999999999999999999
Q ss_pred cCCceeeEeec---cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEE
Q psy4869 1202 DYGDCHKSLLA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLW 1278 (2435)
Q Consensus 1202 ~t~~~~~~~~~---h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iw 1278 (2435)
++++.+..+.. |...|.++.|.+.+...+ +.. .........+.+.+..+++++.|+.|++|
T Consensus 211 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 211 GTGTTIHTFNRKENPHDGVNSIALFVGTDRQL----------HEI------STSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTTEEEEEECBTTBTTCCEEEEEEEECCCSSC----------GGG------CCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred CCCceeEEeecCCCCCCCccEEEEecCCccee----------eec------ccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 99998888874 566788888765432110 000 00112233445555566666666666666
Q ss_pred EcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc-eeEEeecCCeEEEEEcccce-EEEEecC-C
Q psy4869 1279 QLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK-LLAVSLLDTTVKIFFLDTFK-FFISLYG-H 1355 (2435)
Q Consensus 1279 dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~-~lavgs~dG~V~v~d~~~~k-~i~~~~~-h 1355 (2435)
|++..... ......+...+.+++|+|+++ +|++|+.||.|++||+.+++ ++..+.. |
T Consensus 275 d~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 275 NVFSKEQT--------------------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp ETTTCCEE--------------------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST
T ss_pred ECCCCcee--------------------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC
Confidence 66422210 011113456799999999999 99999999999999999864 4667776 5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC---------ceEEEecccccceEEEEEeeCCC---EEEEEeCCCcEE
Q psy4869 1356 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG---------DCHKSLLAHEDSVTGVTFVPKTH---YFFTTSKDGRVK 1423 (2435)
Q Consensus 1356 ~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g---------k~~~~~~~h~~~V~~laf~P~~~---~laSgg~Dg~V~ 1423 (2435)
...|.++. .+++++|++|+.|+.|++|++... .....+..|...|.+++|+|++. .++++|.+|.+.
T Consensus 335 ~~~v~~~~-~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~ 413 (420)
T 3vl1_A 335 GTPINNVY-FAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCA 413 (420)
T ss_dssp TSCEEEEE-EETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEE
T ss_pred CCCceEEE-eCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEE
Confidence 66777774 568899999999999999998873 22334567889999999999998 888899999999
Q ss_pred EEECCC
Q psy4869 1424 QWDADN 1429 (2435)
Q Consensus 1424 lWd~~~ 1429 (2435)
+|++.+
T Consensus 414 ~~~~~~ 419 (420)
T 3vl1_A 414 LYNLSN 419 (420)
T ss_dssp EEESCC
T ss_pred EEeccC
Confidence 999875
No 96
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.7e-31 Score=366.15 Aligned_cols=287 Identities=22% Similarity=0.360 Sum_probs=250.1
Q ss_pred eEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~ 430 (2435)
..+++|.+.|++++|+|++ ++|++|+.||.|++||+... ......+.+|...|.+++|++++++|++|+.|+.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 4688999999999999874 79999999999999998643 223457889999999999999999999999999999
Q ss_pred EEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECCCC--CEE
Q psy4869 431 VWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFNDTA--ECV 504 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp~g--~~l 504 (2435)
+||+.+++.+..+.+|...|.+++|+|++ .+|++++.|++|++||.......... .|...|.+++|+|++ .+|
T Consensus 456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99999999999999999999999999987 45789999999999998755433322 366789999999987 689
Q ss_pred EEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 505 LTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 505 ~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
++|+.||.|++||+++++....+.+|.+.|++++|+|+|++|++++.|++|++||++. .+++..+..+ ..+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~----~~~~~~~~~~-----~~v 605 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE----GKKLYSLEAN-----SVI 605 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT----TEEEECCBCS-----SCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----CceEEEecCC-----CcE
Confidence 9999999999999999999999999999999999999999999999999999999984 4555544433 368
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC-------------------CCeeEEEEcCCCCEEEEEECCC
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN-------------------GSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~-------------------~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
.+++|+|++.+|++++ |+.|+|||+++++.+..+..|. ..+++++|+|++++|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999999888776 5569999999999887775432 2378999999999999999999
Q ss_pred cEEEecCC
Q psy4869 646 TIYLGESP 653 (2435)
Q Consensus 646 ~I~vWd~~ 653 (2435)
.|++|++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
No 97
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4e-31 Score=342.26 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=257.5
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-----eeEEEeeCCCCCeeEEEEccC----C---CEEEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-----ENIGVMSGHTGAVMDLKFSTD----G---CHIFT 422 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-----~~~~~l~~h~~~V~~l~~s~d----g---~~L~s 422 (2435)
...+.+|.+.|++++|+| ++|++|+.||.|++||+.... .....+.+|...|.+++|+++ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 356889999999999998 899999999999999997653 245677899999999999999 9 99999
Q ss_pred EeCCCeEEEEECCCCce-----EEEEecc-----CccccccCcc----cCCCeEEEEEeCCCeEEEEeCCC------Ccc
Q psy4869 423 CSTDQTLAVWDLEKGQR-----IKKMKGH-----STFVNSCDPV----RRGQLLIASGSDDCTVKVWDPRK------KNQ 482 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~-----v~~l~~h-----~~~v~sv~~~----~~~~~llasgs~Dg~I~vwD~~~------~~~ 482 (2435)
++.|+.|++||+.+++. +..+..| ...|.++.|. +++..+|++++.|+.|++||++. ++.
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999999887 8899988 5889999999 88765488999999999999988 555
Q ss_pred eE-----ee--------cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec---C---CCCEEEEEEcCCC
Q psy4869 483 AV-----SM--------NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG---H---SDTVTGLSLSPDG 543 (2435)
Q Consensus 483 ~~-----~~--------~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~---h---~~~V~~i~~spdg 543 (2435)
+. .+ .+...+.+++|+|++ +|++|+.||.|++||+++++.+..+.. | ...|.+++|+|++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~ 245 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 245 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCC
Confidence 54 44 257789999999999 999999999999999999999999999 9 9999999999999
Q ss_pred CEEEEEECC---CcEEEEEcCCCCCCCceEEEEeC-------------cccccccCeEEEEEcCCCCEEEEecCCCeEEE
Q psy4869 544 SYILSNAMD---NTVRIWDIRPYVPGERCVKVMSG-------------HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYI 607 (2435)
Q Consensus 544 ~~las~s~D---g~I~lWdl~~~~~~~~~v~~~~~-------------h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~i 607 (2435)
++|++++.| +.|++||++. .+++..+.+ |. ..+.+++|+|++++|++|+.||.|++
T Consensus 246 ~~l~~~~~d~~~g~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~dg~i~i 317 (397)
T 1sq9_A 246 SLLAIAHDSNSFGCITLYETEF----GERIGSLSVPTHSSQASLGEFAHS----SWVMSLSFNDSGETLCSAGWDGKLRF 317 (397)
T ss_dssp TEEEEEEEETTEEEEEEEETTT----CCEEEEECBC--------CCBSBS----SCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CEEEEEecCCCCceEEEEECCC----CcccceeccCcccccccccccccC----CcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 999999999 9999999984 567777766 43 47899999999999999999999999
Q ss_pred EECCCCcEEEEec------CC---------------CCCeeEEEEcCCC----------CEEEEEECCCcEEEecCC
Q psy4869 608 WDTTTRRIAYKLP------GH---------------NGSVNDVQFHPKE----------PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~------~h---------------~~~V~~l~fspd~----------~~Lasgs~Dg~I~vWd~~ 653 (2435)
||+++++++..+. +| ...|++++|+|++ ++|++|+.||.|++|++.
T Consensus 318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 9999999999999 88 9999999999998 799999999999999985
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=6.5e-30 Score=336.99 Aligned_cols=311 Identities=26% Similarity=0.380 Sum_probs=277.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.+.|+.+ +|++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 121 v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 121 VITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred cEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3566554 68999999999999999999999999999999999999997 6799999999999999999999999999
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
+|...|.++.|+ ++.+++++.|+.|++||+.+++....+ ..|...|.++++ ++.++++|+.||.|++||+
T Consensus 197 ~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 197 GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL------MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE------ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEG
T ss_pred CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE------cCCcccEEEEEE--CCCEEEEEcCCCEEEEEEC
Confidence 999999999995 678999999999999999988766554 479999999999 6889999999999999999
Q ss_pred cCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcc
Q psy4869 1202 DYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLE 1281 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~ 1281 (2435)
++++.+..+..|...|.++.| ++..+++++.||.|++||+++.+.+..+..
T Consensus 267 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------- 317 (445)
T 2ovr_B 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG--------------------------- 317 (445)
T ss_dssp GGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC---------------------------
T ss_pred CCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC---------------------------
Confidence 999999999999999999999 789999999999999999988765443321
Q ss_pred cccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC---CCCC
Q psy4869 1282 LVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---HKLP 1358 (2435)
Q Consensus 1282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~---h~~~ 1358 (2435)
+...+.++.+ ++++|++|+.||.|++||+.+++.+..+.. |..+
T Consensus 318 -------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 364 (445)
T 2ovr_B 318 -------------------------------HQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA 364 (445)
T ss_dssp -------------------------------CCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSC
T ss_pred -------------------------------CcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCC
Confidence 1223445554 577999999999999999999999999986 8889
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEe-----cccccceEEEEEeeCCCEEEEEeCCCc----EEEEECCC
Q psy4869 1359 VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-----LAHEDSVTGVTFVPKTHYFFTTSKDGR----VKQWDADN 1429 (2435)
Q Consensus 1359 V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~-----~~h~~~V~~laf~P~~~~laSgg~Dg~----V~lWd~~~ 1429 (2435)
|.+++|+ +++|++|+.||.|++||+.+++++..+ .+|.++|++++|+|++.+|++|+.||. |.+||++.
T Consensus 365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 365 VTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9999995 689999999999999999999999887 578899999999999999999999997 99999986
Q ss_pred c
Q psy4869 1430 F 1430 (2435)
Q Consensus 1430 ~ 1430 (2435)
.
T Consensus 443 ~ 443 (445)
T 2ovr_B 443 D 443 (445)
T ss_dssp C
T ss_pred C
Confidence 3
No 99
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-30 Score=328.05 Aligned_cols=297 Identities=18% Similarity=0.265 Sum_probs=264.9
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD 1152 (2435)
.....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd 102 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD 102 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC-----CcEEEEEccCCc-----------eeeEeeccCC-
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGD-----------CHKSLLAHED- 1215 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D-----g~V~iwd~~t~~-----------~~~~~~~h~~- 1215 (2435)
+.+++....+. +...|.+++|++++.++++++.+ +.|++||+..+. .+..+..|..
T Consensus 103 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (369)
T 3zwl_B 103 VSNGQCVATWK-------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL 175 (369)
T ss_dssp TTTCCEEEEEE-------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred CCCCcEEEEee-------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence 99887766542 78899999999999999999999 999999998764 3344556666
Q ss_pred -CEEEEEEeeCCCEEEEEECCCcEEEEECCCC-ceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1216 -SVTGVTFVPKTHYFFTTSKDGRVKQWDADNF-ERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1216 -~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~-~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
.+.+++|+|+++.|++++.||.|++||++.. +.+..+.
T Consensus 176 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------------------------------- 215 (369)
T 3zwl_B 176 DAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID---------------------------------------- 215 (369)
T ss_dssp CCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE----------------------------------------
T ss_pred cceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe----------------------------------------
Confidence 9999999999999999999999999999873 3222111
Q ss_pred cccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEE
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIAT 1373 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~s 1373 (2435)
.+...+.+++|+|++++|++++.||.|++||+.+++.+..+. +...+..++|+|+++++++
T Consensus 216 ------------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 216 ------------------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIIL 276 (369)
T ss_dssp ------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred ------------------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEE
Confidence 124568899999999999999999999999999999988888 7789999999999999999
Q ss_pred EeCCC--------------cEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEE
Q psy4869 1374 GSGDR--------------TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1435 (2435)
Q Consensus 1374 Gg~Dg--------------~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~ 1435 (2435)
|+.++ .|++||+.+++++..+.+|...|++++|+|++.+|++++.||.|++||+........
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 277 GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFK 352 (369)
T ss_dssp EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCC
T ss_pred eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhH
Confidence 99998 899999999999999999999999999999999999999999999999987554333
No 100
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=6.2e-30 Score=339.02 Aligned_cols=320 Identities=20% Similarity=0.370 Sum_probs=270.5
Q ss_pred ceecCCCccce-EEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEc
Q psy4869 68 ALLLPGEKHEV-CQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDV 146 (2435)
Q Consensus 68 ~~~~~g~~~~v-~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~ 146 (2435)
...+.||...+ .++.+ ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||+
T Consensus 114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDI 190 (464)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEET
T ss_pred eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEEC
Confidence 34566777764 55555 56799999999999999999999999999999999999999988 9999999999999999
Q ss_pred cCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc-----------------------cccccccc
Q psy4869 147 VAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC-----------------------FKTMAAHL 203 (2435)
Q Consensus 147 ~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~-----------------------~~~~~~h~ 203 (2435)
.+++.+..+.+|.+.|.+++|++.+++.+|++++.|++|++||++++.. +..+.+|.
T Consensus 191 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (464)
T 3v7d_B 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 270 (464)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCS
T ss_pred CCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCcc
Confidence 9999999999999999999999877788999999999999999988764 34567888
Q ss_pred ceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 204 TEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 204 ~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
..|.++ .++++++++++.|+.|++||+++++.
T Consensus 271 ~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~---------------------------------------------- 302 (464)
T 3v7d_B 271 ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC---------------------------------------------- 302 (464)
T ss_dssp SCEEEE--EEETTEEEEEETTSCEEEEETTTTEE----------------------------------------------
T ss_pred ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE----------------------------------------------
Confidence 888876 67899999999999999999874310
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
...+.+|..
T Consensus 303 -----------------------------------------------------------------------~~~~~~~~~ 311 (464)
T 3v7d_B 303 -----------------------------------------------------------------------LYILSGHTD 311 (464)
T ss_dssp -----------------------------------------------------------------------EEEECCCSS
T ss_pred -----------------------------------------------------------------------EEEecCCCC
Confidence 113457889
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.|.+++|+|++++|++|+.||.|++||+..+ ..+..+.+|...|.+++|+ +.+|++++.||.|++||+.+++.....
T Consensus 312 ~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~ 388 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY 388 (464)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence 9999999999999999999999999999765 3566788999999999997 579999999999999999988766555
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEecCCeEEEE
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMW 516 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lw 516 (2435)
. |...+..+.+.+++. ++++++ |+.|++||+++++.+.. ..+...|.+++|+ +..++++++.||.+.+|
T Consensus 389 ~-~~~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 389 H-HTNLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp E-CTTCCCEEEEEECSS-EEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred c-CCCCccEEEEEeCCC-EEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 3 556677778888774 666677 89999999999998875 3678889999997 34455556667765544
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=2.2e-30 Score=335.28 Aligned_cols=293 Identities=16% Similarity=0.177 Sum_probs=257.9
Q ss_pred EEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc------eeEEEeccCCCEEEEEEccC----C---CEEE
Q psy4869 1074 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD------CHKSLLAHEDSVTGVTFVPK----T---HYFF 1140 (2435)
Q Consensus 1074 ~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~------~~~~l~~h~~~V~~v~fsp~----~---~~l~ 1140 (2435)
....+.+|...|.+++|+| ++|++|+.||.|++||+..++ .+..+..|...|.+++|+|+ + ++|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 3456678999999999998 799999999999999999888 78888999999999999999 9 9999
Q ss_pred EEeCCCcEEEEeCCCcce-----eEEEEEEEeeccc-----ccCeEEEEEe----CCCCE-EEEEeCCCcEEEEEccC--
Q psy4869 1141 TTSKDGRVKQWDADNFER-----IVTLHFFISLYGH-----KLPVLSLDMS----YDSTL-IATGSGDRTVKVWGLDY-- 1203 (2435)
Q Consensus 1141 s~s~Dg~V~iwD~~~~~~-----~~~~~~~~~~~~h-----~~~V~~l~~s----~dg~~-l~sgs~Dg~V~iwd~~t-- 1203 (2435)
+++.|+.|++||+.+... ... +..| ...|.+++|+ +++.+ |++++.||.|++||++.
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEK------LDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEE------ECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSS
T ss_pred EEcCCCCEEEEEccCCccccccccee------ecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999987765 333 3466 5899999999 99999 99999999999999998
Q ss_pred ----Cceee-----Ee-------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEE
Q psy4869 1204 ----GDCHK-----SL-------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVV 1267 (2435)
Q Consensus 1204 ----~~~~~-----~~-------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv 1267 (2435)
++.+. .+ ..|...|.+++|+|++ .|++++.||.|++||+++.+.+..+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------ 226 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ------------ 226 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC------------
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecc------------
Confidence 66666 66 3489999999999999 9999999999999999876554433210
Q ss_pred EEECCCeEEEEEcccccccccccccccccccccceeeeeecccccc---cccEEEEEecCCcceeEEeecC---CeEEEE
Q psy4869 1268 TGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL---EEQVLCARVSPDSKLLAVSLLD---TTVKIF 1341 (2435)
Q Consensus 1268 ~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~ia~spdg~~lavgs~d---G~V~v~ 1341 (2435)
..+ ...+.+++|+|++++|++++.| |.|++|
T Consensus 227 -------------------------------------------~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 227 -------------------------------------------HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp -------------------------------------------C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred -------------------------------------------ccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 001 4568999999999999999999 999999
Q ss_pred EcccceEEEEecC-------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec------cc-----
Q psy4869 1342 FLDTFKFFISLYG-------------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL------AH----- 1397 (2435)
Q Consensus 1342 d~~~~k~i~~~~~-------------h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~------~h----- 1397 (2435)
|+.+++.+..+.+ |...|.+++|+|++++|++|+.|+.|++||+.+++++..+. +|
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 343 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDIL 343 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCC
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhh
Confidence 9999999999998 99999999999999999999999999999999999999998 88
Q ss_pred ----------ccceEEEEEeeCC----------CEEEEEeCCCcEEEEECCCc
Q psy4869 1398 ----------EDSVTGVTFVPKT----------HYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1398 ----------~~~V~~laf~P~~----------~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
..+|++++|+|++ .+|++++.||.|++||+.+.
T Consensus 344 ~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 344 AVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 9999999999998 79999999999999998764
No 102
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=3.7e-31 Score=343.16 Aligned_cols=350 Identities=17% Similarity=0.282 Sum_probs=254.4
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCeeEEEE-------------ecCCCc
Q psy4869 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRL-------------SGHKGV 161 (2435)
Q Consensus 96 ~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~~~~l-------------~gH~~~ 161 (2435)
++.+++|+++..+....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+......+ .+|.+.
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc
Confidence 45577888888889999999999999999999 9999999999999999999886644333 269999
Q ss_pred EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCC---CeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMRED---SYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 162 V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~---~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
|.+++|+|. ++.+|++++.||.|++||+++++.+..+. +...+.++++.+.+ .++++++.|+.|++||++.++.
T Consensus 102 v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~- 178 (408)
T 4a11_B 102 VETVQWYPH-DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC- 178 (408)
T ss_dssp EEEEEECTT-CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-
T ss_pred EEEEEEccC-CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-
Confidence 999999863 45579999999999999999999887775 67889999999854 4899999999999999874311
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 179 -------------------------------------------------------------------------------- 178 (408)
T 4a11_B 179 -------------------------------------------------------------------------------- 178 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~ 397 (2435)
...+.+|.+.|.+++|+|++. +|++|+.||.|++||++.....
T Consensus 179 ------------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 179 ------------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp ------------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred ------------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 113457889999999999998 5999999999999999765433
Q ss_pred EEEe---------------eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 398 IGVM---------------SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 398 ~~~l---------------~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
...+ ..|...|.+++|+|++++|++++.|+.|++||+.+++....+.++..... ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~---- 293 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS-----KK---- 293 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC-----SS----
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc-----cc----
Confidence 3333 57899999999999999999999999999999998775433332211000 00
Q ss_pred EEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCC
Q psy4869 463 IASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPD 542 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spd 542 (2435)
.+........+..+++++.++.|++||+.+++.+..+.+|.+.|.+++|+|+
T Consensus 294 ----------------------------~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 294 ----------------------------GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp ----------------------------CCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred ----------------------------cceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 0001111233455677788999999999999999999999999999999999
Q ss_pred CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEecCCCeEEEEECCC
Q psy4869 543 GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 543 g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~s 612 (2435)
+++|++++.||.|++||++.. +.+....... ....+.+ +...+.+.+.|+.+++|+...
T Consensus 346 ~~~l~s~~~dg~i~iw~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 346 FQELYSGSRDCNILAWVPSLY----EPVPDDDETT-------TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp TTEEEEEETTSCEEEEEECC---------------------------------------------------
T ss_pred CCEEEEECCCCeEEEEeCCCC----CccCCCCceE-------eccccccccceeecccCccCceeecCCcc
Confidence 999999999999999999853 2222222111 1112222 334455667889999998653
No 103
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.98 E-value=1.7e-30 Score=362.76 Aligned_cols=291 Identities=26% Similarity=0.460 Sum_probs=251.6
Q ss_pred eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc-----cccccccccceEEEEEEEeCCCeEEEeeCCC
Q psy4869 151 GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD-----CFKTMAAHLTEVWGVCVMREDSYLISGSNDA 225 (2435)
Q Consensus 151 ~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~-----~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg 225 (2435)
....+.+|.+.|++|+|+++ +..+|+|||.|++|++||+.++. +.+.+.+|...|.+++|+|++++|++|+.|+
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~-~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPID-NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEECCSSCEEEEECCTT-CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred hhhhcccCCceeEEEEecCC-CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 34568999999999999864 45689999999999999997643 3467789999999999999999999999999
Q ss_pred cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcc
Q psy4869 226 ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDF 305 (2435)
Q Consensus 226 ~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 305 (2435)
+|++||++++..
T Consensus 453 ~v~vwd~~~~~~-------------------------------------------------------------------- 464 (694)
T 3dm0_A 453 ELRLWDLAAGVS-------------------------------------------------------------------- 464 (694)
T ss_dssp EEEEEETTTTEE--------------------------------------------------------------------
T ss_pred cEEEEECCCCcc--------------------------------------------------------------------
Confidence 999999874310
Q ss_pred ccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCe
Q psy4869 306 AFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQ 385 (2435)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~ 385 (2435)
...+.+|.+.|.+++|+|++++|++|+.|+.
T Consensus 465 -------------------------------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~ 495 (694)
T 3dm0_A 465 -------------------------------------------------TRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495 (694)
T ss_dssp -------------------------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred -------------------------------------------------eeEEeCCCCCEEEEEEeCCCCEEEEEeCCCE
Confidence 0134589999999999999999999999999
Q ss_pred EEEEecCCceeeEE--EeeCCCCCeeEEEEccCC--CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCe
Q psy4869 386 IFIWSVYGECENIG--VMSGHTGAVMDLKFSTDG--CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQL 461 (2435)
Q Consensus 386 I~iwd~~~~~~~~~--~l~~h~~~V~~l~~s~dg--~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~ 461 (2435)
|++||......... ...+|...|.+++|+|++ ..|++++.|+.|++||+++++....+.+|...|.+++|+|++ .
T Consensus 496 i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-~ 574 (694)
T 3dm0_A 496 IKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-S 574 (694)
T ss_dssp EEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-S
T ss_pred EEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC-C
Confidence 99999865433221 124689999999999986 589999999999999999999999999999999999999987 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC----------
Q psy4869 462 LIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS---------- 531 (2435)
Q Consensus 462 llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~---------- 531 (2435)
+|++|+.|+.|++||+++++.+..+.+...+.+++|+|++.++++++ ++.|++||+++++.+..+..|.
T Consensus 575 ~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 653 (694)
T 3dm0_A 575 LCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653 (694)
T ss_dssp EEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccccccc
Confidence 78899999999999999999988888888999999999998887765 5669999999999888775432
Q ss_pred ---------CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 532 ---------DTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 532 ---------~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+++++|+|||++|++|+.||+|+|||+.
T Consensus 654 ~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 654 GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 137899999999999999999999999986
No 104
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.98 E-value=8.5e-29 Score=360.81 Aligned_cols=442 Identities=11% Similarity=0.105 Sum_probs=331.4
Q ss_pred eEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCC------CCEEEEEccCCee
Q psy4869 78 VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKD------TDIVLWDVVAECG 151 (2435)
Q Consensus 78 v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~D------g~I~iWd~~~~~~ 151 (2435)
+...+|++ .+||.++. +.|++|++..++. ..+.+|...|.+++|+|||++||.++.+ ..|.+||+.++.
T Consensus 17 ~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~-~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~- 91 (1045)
T 1k32_A 17 LLNPDIHG--DRIIFVCC-DDLWEHDLKSGST-RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE- 91 (1045)
T ss_dssp CEEEEEET--TEEEEEET-TEEEEEETTTCCE-EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-
T ss_pred EeCcEEeC--CEEEEEEC-CcEEEEECCCCcE-EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-
Confidence 44667775 47777754 7999999988764 5678899999999999999999988654 479999988776
Q ss_pred EEEEecCCCcE-------EEEEEeecCCCcEEEEEeCC------CcEEEEeccCCccccccccccceEEEEEEEeCCCeE
Q psy4869 152 LHRLSGHKGVI-------TDIRFMSQPGHHFVVSSAKD------TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL 218 (2435)
Q Consensus 152 ~~~l~gH~~~V-------~~v~~~~~~~~~~l~S~s~D------g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l 218 (2435)
...+.+|.+.+ ..++|+|+. .++++++.| ..|.+||+.+|+.......+ ...++|+| | ++
T Consensus 92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg--~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~~~~~~sp-G-~l 164 (1045)
T 1k32_A 92 IKRITYFSGKSTGRRMFTDVAGFDPDG--NLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATHILFAD-G-RR 164 (1045)
T ss_dssp EEECCCCCEEEETTEECSEEEEECTTC--CEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSEEEEET-T-EE
T ss_pred eEEcccCCCcccccccccccccCCCCC--EEEEEECCcCCCcccceEEEEECCCCCeEEecCCC---cceeeeCC-C-EE
Confidence 67788999998 999998653 478888765 35778888877653322222 23566888 7 87
Q ss_pred EEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeeccc
Q psy4869 219 ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSI 298 (2435)
Q Consensus 219 ~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 298 (2435)
++++.+.....|+...+.
T Consensus 165 ~~~~~~~~~~~~~~~~g~-------------------------------------------------------------- 182 (1045)
T 1k32_A 165 VIGRNTFELPHWKGYRGG-------------------------------------------------------------- 182 (1045)
T ss_dssp EEEESCSCCTTSTTCCST--------------------------------------------------------------
T ss_pred EEeccCCCccccccccCC--------------------------------------------------------------
Confidence 777755432222211100
Q ss_pred ccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEE
Q psy4869 299 TLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIA 378 (2435)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~La 378 (2435)
....+.+++.. . ....+.+|.+.+.++.|+++ .+++
T Consensus 183 ------------------------~~~~lw~~~~~-~------------------~~~~l~~~~~~v~~~~~s~d-~l~~ 218 (1045)
T 1k32_A 183 ------------------------TRGKIWIEVNS-G------------------AFKKIVDMSTHVSSPVIVGH-RIYF 218 (1045)
T ss_dssp ------------------------TCCEEEEEEET-T------------------EEEEEECCSSCCEEEEEETT-EEEE
T ss_pred ------------------------CcCCEEEECCC-C------------------CeEECcCCCCcccceEEeCC-EEEE
Confidence 00011111100 0 01234689999999999988 6777
Q ss_pred EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec-----------cC
Q psy4869 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG-----------HS 447 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~-----------h~ 447 (2435)
+++.||.++||.+.........+..|. .+..++|+|||++|+.+. ++.|++||+..+ .+..+.+ |.
T Consensus 219 ~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~ 295 (1045)
T 1k32_A 219 ITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISI 295 (1045)
T ss_dssp EECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEEC
T ss_pred EEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccc
Confidence 888899999998753222333445554 467789999999888874 899999999544 3445554 34
Q ss_pred ccccccCcc-cCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc-cEEEEEECCCCCEEEEEecCCeEE-EEECCCCcEE
Q psy4869 448 TFVNSCDPV-RRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY-QVTSVAFNDTAECVLTGGIDNDIK-MWDLRTNSVV 524 (2435)
Q Consensus 448 ~~v~sv~~~-~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~-~v~sv~~sp~g~~l~sgs~dg~V~-lwD~~s~~~v 524 (2435)
..+..+.|+ |++..++.. + ++.|.+|++..+.......+.. .+..++|+ +|+.|+.++.++.|. +||+..++..
T Consensus 296 ~~v~~~~~S~pdG~~la~~-~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~ 372 (1045)
T 1k32_A 296 PSKFAEDFSPLDGDLIAFV-S-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE 372 (1045)
T ss_dssp GGGGEEEEEECGGGCEEEE-E-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred cccceeeecCCCCCEEEEE-E-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce
Confidence 468899999 998665544 4 7899999998876555445555 79999999 999999999888999 9999887654
Q ss_pred EEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-
Q psy4869 525 QKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK- 603 (2435)
Q Consensus 525 ~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg- 603 (2435)
. +.+|...+..++|+|||++|++++.|+.|++||+.. ++......+|. ..+..++|+|||++|+.++.++
T Consensus 373 ~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t----g~~~~~~~~~~----~~v~~~~~SpDG~~la~~~~~~~ 443 (1045)
T 1k32_A 373 K-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET----GKPTVIERSRE----AMITDFTISDNSRFIAYGFPLKH 443 (1045)
T ss_dssp E-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT----CCEEEEEECSS----SCCCCEEECTTSCEEEEEEEECS
T ss_pred E-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC----CceEEeccCCC----CCccceEECCCCCeEEEEecCcc
Confidence 4 448888999999999999999999999999999973 45555555553 3567899999999999887644
Q ss_pred ---------eEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 604 ---------CVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 604 ---------~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.|++||+.+++ +..+..|...+..++|+||++.|+.++.++...+|+..
T Consensus 444 ~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 444 GETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp STTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred ccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 89999999988 67788899999999999999999999999988888753
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.2e-30 Score=332.63 Aligned_cols=289 Identities=17% Similarity=0.260 Sum_probs=242.0
Q ss_pred ceeEecccCCcEEEEEECCCC-CEEEEEeCCCeEEEEecCCceeeE-EEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDG-QYIASSGYDRQIFIWSVYGECENI-GVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~-~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~ 430 (2435)
....+.+|.+.|++++|+|++ ++|++|+.||.|++||+....... ....+|.+.|.+++|+| ++.+|++++.|+.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 345778999999999999999 999999999999999998543322 22347999999999999 778999999999999
Q ss_pred EEECCCCceEEEEecc---CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCC-EEE
Q psy4869 431 VWDLEKGQRIKKMKGH---STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAE-CVL 505 (2435)
Q Consensus 431 vwd~~tg~~v~~l~~h---~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~-~l~ 505 (2435)
+||+++ +.+..+..| ...+.+++|+|++. +|++++.|+.|++||++ ++.+..+ .|...|.+++|+|+++ +|+
T Consensus 145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp EEETTS-CEEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred EEECCC-CceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 999985 566666554 47799999999874 67899999999999995 4455544 5888999999999999 999
Q ss_pred EEecCCeEEEEECCC----CcEEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-
Q psy4869 506 TGGIDNDIKMWDLRT----NSVVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN- 579 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s----~~~v~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~- 579 (2435)
+|+.||.|++||+++ ++.+..+ +|.+.|.+++|+| ++++|++++.|+.|++||++... .+..+.+|...
T Consensus 222 s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~ 296 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS----KPDQIIIHPHRQ 296 (383)
T ss_dssp EEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTT----SCSEEEECCBCC
T ss_pred EEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCc----cccccccccccc
Confidence 999999999999998 6677666 6999999999999 99999999999999999998543 23333333211
Q ss_pred ------------cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC--CCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 580 ------------FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG--HNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 580 ------------~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~--h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
....+..++|+|+|++ +|+.|+.|++||+.+++++..+.+ |...+.+++|+|++++|++|+ ||
T Consensus 297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 1134555777788777 888999999999999999999987 567788889999999999997 99
Q ss_pred cEEEecCC
Q psy4869 646 TIYLGESP 653 (2435)
Q Consensus 646 ~I~vWd~~ 653 (2435)
.|++|+++
T Consensus 374 ~i~iw~~~ 381 (383)
T 3ei3_B 374 NILIWNRE 381 (383)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 99999986
No 106
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=3.3e-30 Score=332.47 Aligned_cols=299 Identities=20% Similarity=0.255 Sum_probs=251.7
Q ss_pred EcCCCeEEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEEccCCceeEEEe--ccCCCEEEEEEcc-CCCEEEEEe
Q psy4869 1068 FLDTFKFFISLYGHKLPVLSLDMSYDS-TLIATGSGDRTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVP-KTHYFFTTS 1143 (2435)
Q Consensus 1068 d~~~~~~~~~l~~h~~~V~sl~~spdg-~~L~Sgs~Dg~I~vWd~~t~~~~~~l~--~h~~~V~~v~fsp-~~~~l~s~s 1143 (2435)
+....+....+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|++++
T Consensus 59 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~ 138 (383)
T 3ei3_B 59 SLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS 138 (383)
T ss_dssp HHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE
T ss_pred cccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe
Confidence 345667777889999999999999999 999999999999999999888877775 5999999999999 779999999
Q ss_pred CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEe
Q psy4869 1144 KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1223 (2435)
Q Consensus 1144 ~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~s 1223 (2435)
.|+.|++||++. .....+ .....+...|.+++|++++.+|++|+.|+.|++||+ .++.+..+..|...|.+++|+
T Consensus 139 ~d~~i~iwd~~~-~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~ 213 (383)
T 3ei3_B 139 IRGATTLRDFSG-SVIQVF---AKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFN 213 (383)
T ss_dssp TTTEEEEEETTS-CEEEEE---ECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEEC
T ss_pred CCCEEEEEECCC-CceEEE---eccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEEC
Confidence 999999999985 333322 223445688999999999999999999999999999 477888899999999999999
Q ss_pred eCCC-EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccce
Q psy4869 1224 PKTH-YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKV 1302 (2435)
Q Consensus 1224 pd~~-~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~ 1302 (2435)
|+++ +|++++.|+.|++||++..+... ..+.
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~----------------------~~~~-------------------------- 245 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKN----------------------SYIA-------------------------- 245 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTT----------------------CEEE--------------------------
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCccc----------------------ceEE--------------------------
Confidence 9998 99999999999999987632100 0000
Q ss_pred eeeeecccccccccEEEEEecC-CcceeEEeecCCeEEEEEcccceEEEEecCCC-----------------CCeEEEEE
Q psy4869 1303 LSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-----------------LPVLSLDM 1364 (2435)
Q Consensus 1303 ~~~~~~~~~~~~~~i~~ia~sp-dg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~-----------------~~V~~la~ 1364 (2435)
...+...+.+++|+| ++++|++++.||.|++||+.+++....+.+|. +.+..++|
T Consensus 246 -------~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 318 (383)
T 3ei3_B 246 -------EMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGR 318 (383)
T ss_dssp -------EEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEEC
T ss_pred -------EecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEe
Confidence 002356799999999 99999999999999999999877666655443 34556777
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCceEEEecc--cccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1365 SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1365 spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~--h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
+|||++ +|+.|+.|++||+.+++++..+.+ |...+..++|+|++.+|++++ ||.|++||+++
T Consensus 319 s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 319 YPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp BCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 888877 888999999999999999999886 567888889999999999997 99999999875
No 107
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=314.93 Aligned_cols=296 Identities=22% Similarity=0.280 Sum_probs=260.2
Q ss_pred CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEE
Q psy4869 1071 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQ 1150 (2435)
Q Consensus 1071 ~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~i 1150 (2435)
..+....+.+|...|.+++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 45778889999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~l 1229 (2435)
|++........+ ..+..|...|.+++| +++++++++.||.|++|| .++.+..+..|...|.++.|.| +++.+
T Consensus 86 ~~~~~~~~~~~~---~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l 158 (313)
T 3odt_A 86 VPLFATSGEDPL---YTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKF 158 (313)
T ss_dssp EETTCCTTSCC----CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEE
T ss_pred EEeeecCCCCcc---cchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEE
Confidence 998765432222 134579999999999 578999999999999999 6777888889999999999999 99999
Q ss_pred EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
++++.||.|++||... .... +
T Consensus 159 ~~~~~d~~i~i~d~~~--~~~~--------------------------~------------------------------- 179 (313)
T 3odt_A 159 LTASADKTIKLWQNDK--VIKT--------------------------F------------------------------- 179 (313)
T ss_dssp EEEETTSCEEEEETTE--EEEE--------------------------E-------------------------------
T ss_pred EEEECCCCEEEEecCc--eEEE--------------------------E-------------------------------
Confidence 9999999999998321 1111 1
Q ss_pred cccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCc
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk 1389 (2435)
...+...+.+++|+|++. |++++.+|.|++||+.+++.+..+.+|.++|.+++|+|++ .|++|+.|+.|++||+.+++
T Consensus 180 ~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp CSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred eccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 011356789999999999 9999999999999999999999999999999999999999 58999999999999999999
Q ss_pred eEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEE
Q psy4869 1390 CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1390 ~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++..+..|..+|++++|+|++. |++++.||.|++||+...+.+...
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 258 LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999999999999999998 667999999999999986665543
No 108
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=3.6e-30 Score=329.79 Aligned_cols=287 Identities=17% Similarity=0.221 Sum_probs=250.3
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
++..|.++|++++|+|+|++|++|+.||.|++||+.... .....+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456799999999999999999999999999999997653 3566788999999999999999999999999999999998
Q ss_pred CCceEEEE--eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc---eEee--cCcccEEEEEECCCCCEEEEEe
Q psy4869 436 KGQRIKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---AVSM--NNTYQVTSVAFNDTAECVLTGG 508 (2435)
Q Consensus 436 tg~~v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---~~~~--~~~~~v~sv~~sp~g~~l~sgs 508 (2435)
+++....+ ..|...+.++.|++++ .++++++.|+.|++||++.+.. .... .+...|.+++|+|++++|++|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 88755444 6788999999999987 5778899999999999988763 2222 4678899999999999999999
Q ss_pred cCCeEEEEEC------------------CCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 509 IDNDIKMWDL------------------RTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 509 ~dg~V~lwD~------------------~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
.||.|++||+ ..++.+..+.+|.+.|.+++|+|++++|++++.|+.|++||++. .+++
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~ 237 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KMAV 237 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG----TTEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC----Ccee
Confidence 9999999995 46788999999999999999999999999999999999999984 5677
Q ss_pred EEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC--CcE--------------------------------E
Q psy4869 571 KVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT--RRI--------------------------------A 616 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s--~~~--------------------------------~ 616 (2435)
..+..|. ..+.+++|+|++++|++| .|+.|++||+.+ ++. .
T Consensus 238 ~~~~~~~----~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 238 ATLASET----LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp EEEECSS----CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred EEEccCC----CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 8887764 378999999999999988 899999999987 421 0
Q ss_pred ------EEe-cCCCCCeeEEEEc-CCC---CEEEEEECCCcEEEecCC
Q psy4869 617 ------YKL-PGHNGSVNDVQFH-PKE---PIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 617 ------~~l-~~h~~~V~~l~fs-pd~---~~Lasgs~Dg~I~vWd~~ 653 (2435)
..+ .+|.+.|++++|+ +++ ++|++|+.||.|++|++.
T Consensus 313 ~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp ------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred cCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence 223 4899999999977 666 899999999999999986
No 109
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=327.65 Aligned_cols=292 Identities=18% Similarity=0.282 Sum_probs=244.6
Q ss_pred eEecccCCcEEEEEECCCCCEE-EEEeC---CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccC---CCEEEEEeCCCe
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYI-ASSGY---DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTD---GCHIFTCSTDQT 428 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~L-asgs~---Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~d---g~~L~s~s~Dg~ 428 (2435)
.++++|.+.|++++|+|++..+ ++|+. ||.|++||+...........+|...|.+++|+|+ +.+|++++.||.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 4678899999999999999655 56665 9999999998765444445579999999999998 699999999999
Q ss_pred EEEEECCCCc-eEEEEeccCccccccC------cccCCCeEEEEEeCCCeEEEEeCCCCc-ceEeec-C----cccEEEE
Q psy4869 429 LAVWDLEKGQ-RIKKMKGHSTFVNSCD------PVRRGQLLIASGSDDCTVKVWDPRKKN-QAVSMN-N----TYQVTSV 495 (2435)
Q Consensus 429 I~vwd~~tg~-~v~~l~~h~~~v~sv~------~~~~~~~llasgs~Dg~I~vwD~~~~~-~~~~~~-~----~~~v~sv 495 (2435)
|++||+.+++ .+..+.+|...|.++. |++++ .+|++++.|+.|++||++.+. ....+. + ...+.++
T Consensus 92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~-~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGA-PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CC-CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCc-cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 9999999988 8899999999999984 45665 578899999999999999876 555552 2 3378888
Q ss_pred E----ECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCcEEEEEcCCCCCCCc
Q psy4869 496 A----FNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP---DGSYILSNAMDNTVRIWDIRPYVPGER 568 (2435)
Q Consensus 496 ~----~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp---dg~~las~s~Dg~I~lWdl~~~~~~~~ 568 (2435)
+ |+|++++|++|+.||.|++||+++++.... ..|...|.+++|+| ++++|++++.||.|++||++.......
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 789999999999999999999999987544 66889999999999 999999999999999999985332211
Q ss_pred e-EEEEeCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCCC-------------------cEEEEecCCCCCee
Q psy4869 569 C-VKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTTR-------------------RIAYKLPGHNGSVN 627 (2435)
Q Consensus 569 ~-v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s~-------------------~~~~~l~~h~~~V~ 627 (2435)
. ...+.+|. ..+.+++|+|+++ +|++|+.||.|++||++.+ +++..+.+|...|+
T Consensus 250 ~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 250 FASVSEKAHK----STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp EEEEEEECCS----SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred eeeeccCCCc----CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 1 11223553 4789999999998 8999999999999998754 46778889999999
Q ss_pred EEEEcCCCCEEE-EEECCCcEEEecCC
Q psy4869 628 DVQFHPKEPIIM-SASSDKTIYLGESP 653 (2435)
Q Consensus 628 ~l~fspd~~~La-sgs~Dg~I~vWd~~ 653 (2435)
+++|+|++++|+ +++.||.|++|++.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999888 89999999999986
No 110
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4e-31 Score=347.53 Aligned_cols=304 Identities=16% Similarity=0.197 Sum_probs=239.3
Q ss_pred CeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCee--EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCc
Q psy4869 108 DVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECG--LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTF 184 (2435)
Q Consensus 108 ~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~--~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~ 184 (2435)
.......+|...|+||+|+| ++++||+|+.||.|+|||+..... ...+.+|.+.|++|+|+|. ++.+|+++|.||+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~ 188 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGT 188 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCE
Confidence 34456678999999999999 467999999999999999977653 4456799999999999874 4568999999999
Q ss_pred EEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCc
Q psy4869 185 VKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDL 262 (2435)
Q Consensus 185 I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (2435)
|++||++++...... ..+...+.+++|+|++.+|++|+.||.|++||++...
T Consensus 189 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-------------------------- 242 (435)
T 4e54_B 189 TRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-------------------------- 242 (435)
T ss_dssp EEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB--------------------------
T ss_pred EEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce--------------------------
Confidence 999999876543222 3444567899999999999999999999999976310
Q ss_pred eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeec
Q psy4869 263 TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQ 342 (2435)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~ 342 (2435)
T Consensus 243 -------------------------------------------------------------------------------- 242 (435)
T 4e54_B 243 -------------------------------------------------------------------------------- 242 (435)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCcee--eEEEeeCCCCCeeEEEEccCCCE
Q psy4869 343 KDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECE--NIGVMSGHTGAVMDLKFSTDGCH 419 (2435)
Q Consensus 343 ~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~--~~~~l~~h~~~V~~l~~s~dg~~ 419 (2435)
+..+.+|.+.|++++|+|++. +|++|+.|+.|+|||++.... .+....+|...|.+++|+|||.+
T Consensus 243 ------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 310 (435)
T 4e54_B 243 ------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR 310 (435)
T ss_dssp ------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE
T ss_pred ------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe
Confidence 012457899999999999876 788999999999999875432 23344679999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeccCcccc------ccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVN------SCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~------sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
|++++.|+.|++||+.+++....+..|..... .+.|.+.+ .+.
T Consensus 311 l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~ 359 (435)
T 4e54_B 311 LLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRY-------------------------------NLI 359 (435)
T ss_dssp EEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSS-------------------------------SCE
T ss_pred eEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCC-------------------------------CEE
Confidence 99999999999999999988888877654221 11222222 233
Q ss_pred EEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEEe-cCCCCEEEE-EEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 494 SVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQKLR-GHSDTVTGL-SLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 494 sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~l~-~h~~~V~~i-~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.+.+++++..+++++ .++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |++|+|||++.
T Consensus 360 ~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 360 VVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp EEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 444556665555444 44679999999999988874 688889887 6999999999876 88999999984
No 111
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=6.9e-30 Score=327.14 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=254.1
Q ss_pred EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4869 1078 LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1155 (2435)
Q Consensus 1078 l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~ 1155 (2435)
+..|..+|.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 83 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 83 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999887 8888999999999999999999999999999999999987
Q ss_pred cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce---e-eEeeccCCCEEEEEEeeCCCEEEE
Q psy4869 1156 FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC---H-KSLLAHEDSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1156 ~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~---~-~~~~~h~~~V~~i~~spd~~~lvs 1231 (2435)
.+..... ....|...|.+++|++++++|++++.|+.|++||++.++. . .....|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 84 RTWKPTL----VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp TEEEEEE----ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred CeeeeeE----EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 6543332 2457889999999999999999999999999999998773 2 333578999999999999999999
Q ss_pred EECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccc
Q psy4869 1232 TSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTL 1311 (2435)
Q Consensus 1232 gs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (2435)
++.||.|++||++......... ...|..+ ..... .. ....
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~---------------------~~~~~~~---------------~~~~~---~~-~~~~ 199 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPA---------------------PTPWGSK---------------MPFGE---LM-FESS 199 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCC---------------------CBTTBSC---------------CCTTC---EE-EECC
T ss_pred EcCCCCEEEEEccccccccccc---------------------ccccccc---------------cchhh---he-EecC
Confidence 9999999999986432100000 0000000 00000 00 0111
Q ss_pred cccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCC--Cc
Q psy4869 1312 KLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GD 1389 (2435)
Q Consensus 1312 ~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~--gk 1389 (2435)
.+...+.+++|+|++++|++++.||.|++||+.+++.+..+..|..+|.+++|+|++++|++| .|+.|++|++.. ++
T Consensus 200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~ 278 (372)
T 1k8k_C 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGK 278 (372)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTE
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCce
Confidence 346789999999999999999999999999999999999999999999999999999999888 999999999988 42
Q ss_pred e--------------------------------E------EEe-cccccceEEEEEee-CC---CEEEEEeCCCcEEEEE
Q psy4869 1390 C--------------------------------H------KSL-LAHEDSVTGVTFVP-KT---HYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1390 ~--------------------------------~------~~~-~~h~~~V~~laf~P-~~---~~laSgg~Dg~V~lWd 1426 (2435)
. . ..+ .+|..+|++++|++ ++ .+|+|||.||.|++||
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 279 LSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp EEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred EEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 1 0 223 48999999999774 55 8999999999999999
Q ss_pred CCCcee
Q psy4869 1427 ADNFER 1432 (2435)
Q Consensus 1427 ~~~~~~ 1432 (2435)
+.+.+.
T Consensus 359 ~~~~~~ 364 (372)
T 1k8k_C 359 VRSLES 364 (372)
T ss_dssp HHHHHH
T ss_pred ecChhH
Confidence 986443
No 112
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=3.7e-30 Score=328.37 Aligned_cols=292 Identities=15% Similarity=0.274 Sum_probs=248.6
Q ss_pred eEecccCCcEEEEEECCC----CCEEEEEeCCCeEEEEecCCcee--eEEEe--eCCCCCeeEEEEccC----CCEEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPD----GQYIASSGYDRQIFIWSVYGECE--NIGVM--SGHTGAVMDLKFSTD----GCHIFTC 423 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspd----g~~Lasgs~Dg~I~iwd~~~~~~--~~~~l--~~h~~~V~~l~~s~d----g~~L~s~ 423 (2435)
.+..+|.+.|++++|+|+ ...+++++.++.|++||+..... .+... ..|...|.+++|+++ +.+|+++
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 356699999999999984 45677777788999999974322 12212 237789999999998 6799999
Q ss_pred eCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee----cCcccEEEEEECC
Q psy4869 424 STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM----NNTYQVTSVAFND 499 (2435)
Q Consensus 424 s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~----~~~~~v~sv~~sp 499 (2435)
+.||.|++||+.+++.+..+.+|...|.++.|+|.+..+|++++.|+.|++||++.++....+ .+...|.+++|+|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 999999999999999999999999999999999966678899999999999999999888876 5788999999999
Q ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEE----------------------------ecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTNSVVQKL----------------------------RGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~~~v~~l----------------------------~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+ +++|++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 9999999999999999999987654333 3499999999998 789999999
Q ss_pred CCcEEEEEcCCCCC----------CCceEEEEeCcccccccCeEEEEEcCC--CCEEEEecCCCeEEEEECCCCc----E
Q psy4869 552 DNTVRIWDIRPYVP----------GERCVKVMSGHQHNFEKNLLRCAWSVS--GLYVTAGSADKCVYIWDTTTRR----I 615 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~----------~~~~v~~~~~h~~~~~~~i~~v~~spd--g~~Lasgs~Dg~V~iwd~~s~~----~ 615 (2435)
|+.|++||++.... ....+..+.+|. ..+..++|+|+ |++|++|+.||.|++||+.+++ .
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ----CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS----CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccC----CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 99999999985422 113456666664 35778999999 9999999999999999999875 4
Q ss_pred EEEecCC--CCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 616 AYKLPGH--NGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 616 ~~~l~~h--~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
...+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 4577787 7999999999999999999999999999974
No 113
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=322.86 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=244.2
Q ss_pred EEecCCcCEEEEEEcCCCCEEE-EEEC---CCcEEEEEccCCceeEEE-eccCCCEEEEEEccC---CCEEEEEeCCCcE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIA-TGSG---DRTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPK---THYFFTTSKDGRV 1148 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~-Sgs~---Dg~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~---~~~l~s~s~Dg~V 1148 (2435)
.+.+|...|.+++|+|++..++ +|+. ||.|++||+.+++..... ..|...|.+++|+|+ +.+|++++.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 4567999999999999996554 5555 999999999998876554 379999999999998 6999999999999
Q ss_pred EEEeCCCcc-eeEEEEEEEeecccccCeEEEEE------eCCCCEEEEEeCCCcEEEEEccCCc-eeeEeeccCC----C
Q psy4869 1149 KQWDADNFE-RIVTLHFFISLYGHKLPVLSLDM------SYDSTLIATGSGDRTVKVWGLDYGD-CHKSLLAHED----S 1216 (2435)
Q Consensus 1149 ~iwD~~~~~-~~~~~~~~~~~~~h~~~V~~l~~------s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~~~h~~----~ 1216 (2435)
++||+.+.. ....+ ..|...|.+++| ++++++|++++.||.|++||+++++ .+..+..|.+ .
T Consensus 93 ~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSV------KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp EEECTTSCSSCSEEE------CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred EEEeCCCCCccEEEE------EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999876 44443 489999999965 6789999999999999999999887 6777766655 8
Q ss_pred EEEEE----EeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccc
Q psy4869 1217 VTGVT----FVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292 (2435)
Q Consensus 1217 V~~i~----~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~ 1292 (2435)
|.++. |+|++++|++++.||.|++||++..+....
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----------------------------------------- 205 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----------------------------------------- 205 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-----------------------------------------
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-----------------------------------------
Confidence 99998 678999999999999999999987543211
Q ss_pred ccccccccceeeeeecccccccccEEEEEecC---CcceeEEeecCCeEEEEEcccceEEEEe-----cCCCCCeEEEEE
Q psy4869 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP---DSKLLAVSLLDTTVKIFFLDTFKFFISL-----YGHKLPVLSLDM 1364 (2435)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~sp---dg~~lavgs~dG~V~v~d~~~~k~i~~~-----~~h~~~V~~la~ 1364 (2435)
..+...+.+++|+| ++.+|++|+.||.|++||+.+++.+..+ .+|...|.+++|
T Consensus 206 ------------------~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 267 (357)
T 3i2n_A 206 ------------------TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267 (357)
T ss_dssp ------------------EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEE
T ss_pred ------------------cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEE
Confidence 01245689999999 9999999999999999999886654444 389999999999
Q ss_pred ecCCC-EEEEEeCCCcEEEEeCCCC-------------------ceEEEecccccceEEEEEeeCCCEEE-EEeCCCcEE
Q psy4869 1365 SYDST-LIATGSGDRTVKVWGLDYG-------------------DCHKSLLAHEDSVTGVTFVPKTHYFF-TTSKDGRVK 1423 (2435)
Q Consensus 1365 spdg~-~L~sGg~Dg~V~iwdl~~g-------------------k~~~~~~~h~~~V~~laf~P~~~~la-Sgg~Dg~V~ 1423 (2435)
+|+++ +|++|+.||.|++||++.+ +++..+.+|..+|++++|+|++.+|+ +++.||.|+
T Consensus 268 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~ 347 (357)
T 3i2n_A 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVR 347 (357)
T ss_dssp ETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred CCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEE
Confidence 99999 8999999999999999864 46677889999999999999999888 899999999
Q ss_pred EEECCCcee
Q psy4869 1424 QWDADNFER 1432 (2435)
Q Consensus 1424 lWd~~~~~~ 1432 (2435)
+||+...++
T Consensus 348 iw~~~~~~~ 356 (357)
T 3i2n_A 348 VLIVTKLNK 356 (357)
T ss_dssp EEEECC---
T ss_pred EEECCCccc
Confidence 999987654
No 114
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=1.1e-29 Score=323.88 Aligned_cols=308 Identities=17% Similarity=0.268 Sum_probs=251.6
Q ss_pred eeeeeCCCCceEEEEEeCC----CCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCC----C
Q psy4869 16 FNIIASPNCNVVFVTLKNQ----EGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHD----S 87 (2435)
Q Consensus 16 ~~~~~~~~~~v~~~~~~~~----~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d----~ 87 (2435)
.-+..+|.+.|.++++.+. ++.+++++.+|.|+|||+.+.+..... .......+...|.+++|+++ +
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~ 85 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL-----QSYVDADADENFYTCAWTYDSNTSH 85 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEE-----EEEECSCTTCCEEEEEEEECTTTCC
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEee-----eeccccCCCCcEEEEEeccCCCCCC
Confidence 3566689999999988652 334666678889999999876543311 11222335667899999999 6
Q ss_pred CeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCCeeEEEE---ecCCCcEE
Q psy4869 88 SQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAECGLHRL---SGHKGVIT 163 (2435)
Q Consensus 88 ~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~~~~~~l---~gH~~~V~ 163 (2435)
.+|++|+.||.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+ .+|...|.
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~ 165 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEE
T ss_pred CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCcee
Confidence 6899999999999999999999999999999999999999 8999999999999999999999988888 78999999
Q ss_pred EEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccccc----------------------------ccceEEEEEEEeCC
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA----------------------------HLTEVWGVCVMRED 215 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~----------------------------h~~~V~~l~~~p~~ 215 (2435)
+++|+| ++.+|++++.||.|++||+++++.+..+.. |...|.+++|+ +
T Consensus 166 ~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 241 (366)
T 3k26_A 166 SADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G 241 (366)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T
T ss_pred EEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C
Confidence 999985 466899999999999999999887766554 99999999998 7
Q ss_pred CeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeee
Q psy4869 216 SYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCI 295 (2435)
Q Consensus 216 ~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 295 (2435)
++|++++.|+.|++||++........ ....
T Consensus 242 ~~l~~~~~d~~i~~wd~~~~~~~~~~------------------------------------~~~~-------------- 271 (366)
T 3k26_A 242 DLILSKSCENAIVCWKPGKMEDDIDK------------------------------------IKPS-------------- 271 (366)
T ss_dssp TEEEEECSSSEEEEEEESSTTCCGGG------------------------------------CCTT--------------
T ss_pred CEEEEEecCCEEEEEeCCCccccccc------------------------------------cccC--------------
Confidence 89999999999999999864321000 0000
Q ss_pred cccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCC--
Q psy4869 296 SSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD-- 373 (2435)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd-- 373 (2435)
. ........+.+|...|++++|+|+
T Consensus 272 ----------------------------~-------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~ 298 (366)
T 3k26_A 272 ----------------------------E-------------------------SNVTILGRFDYSQCDIWYMRFSMDFW 298 (366)
T ss_dssp ----------------------------C-------------------------CCEEEEEEEECSSCCSSCCCCEECTT
T ss_pred ----------------------------C-------------------------cchheeccccccCCcEEEEEEcCCCC
Confidence 0 000122356788999999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCce---eeEEEeeCC--CCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 374 GQYIASSGYDRQIFIWSVYGEC---ENIGVMSGH--TGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 374 g~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h--~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
|++|++|+.||.|++||+.... .....+.+| ...|.+++|+|++++|++++.||.|++||+.
T Consensus 299 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 299 QKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999999997642 234466777 7999999999999999999999999999985
No 115
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=312.10 Aligned_cols=282 Identities=20% Similarity=0.264 Sum_probs=249.3
Q ss_pred cceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEE
Q psy4869 353 APIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 353 ~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vw 432 (2435)
.+...+.+|.+.|++++| |++.+|++|+.||.|++||+... .....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 345678999999999999 99999999999999999999664 3456678899999999999999999999999999999
Q ss_pred ECCCC---ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECC-CCCEEEEE
Q psy4869 433 DLEKG---QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFND-TAECVLTG 507 (2435)
Q Consensus 433 d~~tg---~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp-~g~~l~sg 507 (2435)
++... +.+..+.+|...+.++.|. +.++++++.|+.|++|| .+.....+ .+...+.+++|.| ++++++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 98754 6678889999999999882 35788999999999999 44444444 5788999999988 99999999
Q ss_pred ecCCeEEEEECCCCcEEEEEec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEE
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRG-HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR 586 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~-h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~ 586 (2435)
+.||.|++|| .++.+..+.. |...|.+++|+|++. +++++.|+.|++||++. .+++..+.+|. ..+.+
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~----~~~~~~~~~~~----~~i~~ 230 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHT----GDVLRTYEGHE----SFVYC 230 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTT----CCEEEEEECCS----SCEEE
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCc----hhhhhhhhcCC----ceEEE
Confidence 9999999999 5667777777 999999999999998 99999999999999984 56778887775 47899
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
++|+|+| .|++++.||.|++||+++++++..+..|...|.+++|+|+++ +++++.||.|++|++..
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence 9999999 588999999999999999999999999999999999999998 66799999999999974
No 116
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.3e-31 Score=339.69 Aligned_cols=323 Identities=12% Similarity=0.146 Sum_probs=235.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEe
Q psy4869 112 TFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWD 189 (2435)
Q Consensus 112 ~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd 189 (2435)
.+..|.+.|++++|+|+|++||+|+.|+.|+|||+.+. +.+..+.+|.+.|.+++|+|+ +.+|++++.|++|++||
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTT--TCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCC--CCEEEEEeCCCeEEEEE
Confidence 44557889999999999999999999999999999988 677888999999999999854 56899999999999999
Q ss_pred ccCCc---cccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeee
Q psy4869 190 ADTGD---CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSK 266 (2435)
Q Consensus 190 ~~tg~---~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 266 (2435)
+++++ ....+.+|...|.+++|+|++++|++++.|+.|++||++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------------------- 135 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---------------------------- 135 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----------------------------
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----------------------------
Confidence 99988 66777899999999999999999999999999999998743100
Q ss_pred EEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccccc
Q psy4869 267 IEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVG 346 (2435)
Q Consensus 267 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~ 346 (2435)
T Consensus 136 -------------------------------------------------------------------------------- 135 (377)
T 3dwl_C 136 -------------------------------------------------------------------------------- 135 (377)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccceeEecc-cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-----------------ceeeEEEeeCCCCCe
Q psy4869 347 RTSNLFAPIMLLEG-HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-----------------ECENIGVMSGHTGAV 408 (2435)
Q Consensus 347 ~~~~~~~p~~~l~g-H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-----------------~~~~~~~l~~h~~~V 408 (2435)
.....+.+ |...|++++|+|++++|++|+.||.|++||+.. .......+ +|.+.|
T Consensus 136 ------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v 208 (377)
T 3dwl_C 136 ------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV 208 (377)
T ss_dssp ------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE
T ss_pred ------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceE
Confidence 00012334 899999999999999999999999999999852 12334445 899999
Q ss_pred eEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc--c
Q psy4869 409 MDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR----IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN--Q 482 (2435)
Q Consensus 409 ~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~----v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~--~ 482 (2435)
.+++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.++.|+|++ .+|++++.|+.+ +|+..... .
T Consensus 209 ~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~~~~~-~~~~~~~~~~~ 286 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-AIVAAGYNYSPI-LLQGNESGWAH 286 (377)
T ss_dssp EEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-EEEEEESSSSEE-EECCCC---CC
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-CEEEEEcCCcEE-EEEeCCCceEE
Confidence 9999999999999999999999999999987 78889999999999999987 567788777666 66654322 1
Q ss_pred eEeecCc----------------ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCC-C-
Q psy4869 483 AVSMNNT----------------YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG-S- 544 (2435)
Q Consensus 483 ~~~~~~~----------------~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg-~- 544 (2435)
...+... .....+.|+.....+......|... ........|.+.|++|.+.++. .
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~~~~~~~ 359 (377)
T 3dwl_C 287 TRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPYAGTPGN 359 (377)
T ss_dssp SBCCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEEEEETTE
T ss_pred Eeeecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEeccCCCCCc
Confidence 1111110 1133333333322222211111110 1111234699999999976643 3
Q ss_pred --EEEEEECCCcEEEEEc
Q psy4869 545 --YILSNAMDNTVRIWDI 560 (2435)
Q Consensus 545 --~las~s~Dg~I~lWdl 560 (2435)
.|++++.||.|+|||+
T Consensus 360 ~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 360 ITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp EEEEEEEETTSEEEEECC
T ss_pred eEEEEeecCCCcEEEecC
Confidence 6999999999999995
No 117
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=99.97 E-value=8.2e-33 Score=336.79 Aligned_cols=208 Identities=15% Similarity=0.116 Sum_probs=137.0
Q ss_pred ccccCCCCCCCCCcccccccccccCccCCCCCC--CCCCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccc
Q psy4869 2138 KLSANEDPEEFPNEDVFEHTFAEIPNIDHSNQT--DEAIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLK 2215 (2435)
Q Consensus 2138 ~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~~--~~~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~ 2215 (2435)
+++.++..|.|+..+.................. ..+||++||||+ ++ ||||||.|||||
T Consensus 19 ~~~~~~~~~~~~~~lG~~p~~~d~rd~~~~~~~~~~~~lP~s~DwR~-----~~---pVkdQG~CGSCW----------- 79 (291)
T 3ois_A 19 SHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEKSVIAALPPKVDLTP-----PF---QVYDQGRIGSCT----------- 79 (291)
T ss_dssp ----CCCCCCCCTTCCEECCCCCTTCCBCCCCHHHHHTCCSEEECCC-----SS---CCCBCTTSSCHH-----------
T ss_pred hhHhHhhhccccccCCCCCCCCcccccccCCCccccccCCcceeccc-----CC---CcccCCCCccHH-----------
Confidence 455677778887665544333222221111111 247999999999 53 999999999999
Q ss_pred cceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCcccee-cccCCCCCCCCCCCCCCCCCCChhhHHH
Q psy4869 2216 GLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLI-CSCTNCTRMHTKTPMSMCMGGDSAAAWM 2294 (2435)
Q Consensus 2216 ~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~-~~~~~c~~~~~~~~~~gC~gg~~~~a~~ 2294 (2435)
|||++++||+++++ ++.... ||+|+|+ |+| ...- .....+|+||++..||+
T Consensus 80 ---------------------AFAa~~alE~~~~~-~g~~~~--lS~q~l~~~~c---~~~~-~~~~~~c~GG~~~~A~~ 131 (291)
T 3ois_A 80 ---------------------ANALAAAIQFERIH-DKQSPE--FIPSRLFIYYN---ERKI-EGHVNYDSGAMIRDGIK 131 (291)
T ss_dssp ---------------------HHHHHHHHHHHHHH-TTCSSC--CCBCHHHHHHH---HHHH-SSCTTSCCCEEHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHH-hCCCCC--cCcCHHHHHhh---hhhh-hcCCCCCCCcCHHHHHH
Confidence 99999999999865 455444 9999997 333 2100 00113589999999999
Q ss_pred HHHHcCccCCCcccCCCCCc----ccc--------------------------------ccCcccceeecccCCcccccc
Q psy4869 2295 YWINAGLVDGGDYGTHDVSM----GRY--------------------------------IEGIGHAASVMGSSNPEVNNF 2338 (2435)
Q Consensus 2295 ~~~~~Gi~~~~~y~~~~~~~----~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 2338 (2435)
|++++||++|++|||..... ..+ +..++.++...+|+.+.++.+
T Consensus 132 yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~p~~~C~~~~~~~~i~~y~~v~~~e~~i~~al~~~gPV~v~~~~~ 211 (291)
T 3ois_A 132 VLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPFVFGFSVY 211 (291)
T ss_dssp HHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCGGGSCCCHHHHHHHGGGCCCEEEECCSCHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHhCCCCHhhCCCCCCccccccccccccccccCCCCHHHHhhcccceeccEEEcCcCHHHHHHHHHcCCCEEEEEEec
Confidence 99999999999999976520 000 011122233445665555444
Q ss_pred eeeEEEEec--CCC-----c-CcccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEeeC
Q psy4869 2339 EKVIRLYSC--EGS-----I-NPRYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRGV 2396 (2435)
Q Consensus 2339 ~~~~~~~~~--~~~-----~-~~~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~~ 2396 (2435)
.. |+.|.. +.+ . ...++|||+||||| ++++|||||||||+.|||+|||||.|+.
T Consensus 212 ~~-f~~y~~~~Gi~~~~~~~~~~~~~Hav~iVGy~---~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 273 (291)
T 3ois_A 212 NS-WVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD---DEIRHFRIRNSWGNNVGEDGYFWMPYEY 273 (291)
T ss_dssp HH-HHGGGCCCSBCCCCCTTSCEEEEEEEEEEEEE---TTTTEEEEECSBCTTSTBTTEEEEEHHH
T ss_pred cc-hhhcCCCCeEEeCCCCCCCCcCCeEEEEEEEe---CCCCEEEEEeCCCCCCCCCcEEEEEHHH
Confidence 21 222221 111 1 12358999999998 4678999999999999999999999984
No 118
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.5e-30 Score=334.41 Aligned_cols=314 Identities=13% Similarity=0.201 Sum_probs=258.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEEccC---Cc---eeE
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-YGHKLPVLSLDMSY-DSTLIATGSGDRTVKVWGLDY---GD---CHK 1118 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l-~~h~~~V~sl~~sp-dg~~L~Sgs~Dg~I~vWd~~t---~~---~~~ 1118 (2435)
.|+|++..++.+. .|+ .+++.+..+ .+|...|.+++|+| ++++|++|+.||.|++||+.+ +. ...
T Consensus 34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888777664 366 456788888 88999999999999 999999999999999999976 43 233
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC---CcceeEEEE--EEEee--cc--cccCeEEEE--EeCCCCEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD---NFERIVTLH--FFISL--YG--HKLPVLSLD--MSYDSTLI 1187 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~---~~~~~~~~~--~~~~~--~~--h~~~V~~l~--~s~dg~~l 1187 (2435)
.+ .|...|.+++|+|++++|++++.|+.|++||+. .++...... ....+ .. +...+.++. +++++.+|
T Consensus 107 ~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l 185 (437)
T 3gre_A 107 TY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL 185 (437)
T ss_dssp EE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred ec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence 33 599999999999999999999999999999995 443333221 11111 12 566788877 55889999
Q ss_pred EEEeCCCcEEEEEccCCceeeEeec--cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1188 ATGSGDRTVKVWGLDYGDCHKSLLA--HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1188 ~sgs~Dg~V~iwd~~t~~~~~~~~~--h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
++|+.|+.|++||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||++..+.+..+..
T Consensus 186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----------- 254 (437)
T 3gre_A 186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF----------- 254 (437)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC-----------
T ss_pred EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec-----------
Confidence 9999999999999999999999987 899999999999999999999999999999987665443321
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEE----EecCCcceeEEeecCCeEEEE
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA----RVSPDSKLLAVSLLDTTVKIF 1341 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i----a~spdg~~lavgs~dG~V~v~ 1341 (2435)
.....|.++ .|+|++.+|++|+.||.|++|
T Consensus 255 ----------------------------------------------~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw 288 (437)
T 3gre_A 255 ----------------------------------------------GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW 288 (437)
T ss_dssp ----------------------------------------------TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred ----------------------------------------------CCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence 112356777 555679999999999999999
Q ss_pred EcccceEEEEecC--------------------------CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec
Q psy4869 1342 FLDTFKFFISLYG--------------------------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1395 (2435)
Q Consensus 1342 d~~~~k~i~~~~~--------------------------h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~ 1395 (2435)
|+.+++.+..+.+ |...|.+++|+ ++++|++|+.|+.|++||+.++++...+.
T Consensus 289 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 289 NFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp ETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 9999888777764 44568889999 78999999999999999999998777665
Q ss_pred c-------------------------------------cccceEEEEEeeC--CCEEEEEeCCCcEEEEE
Q psy4869 1396 A-------------------------------------HEDSVTGVTFVPK--THYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1396 ~-------------------------------------h~~~V~~laf~P~--~~~laSgg~Dg~V~lWd 1426 (2435)
+ |...|++|+|+++ +.+|+||+.||.|+||+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 368 SPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 5 8899999999998 78999999999999995
No 119
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.6e-30 Score=337.38 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=234.8
Q ss_pred eEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vw 432 (2435)
....+|...|+||+|+| ++++||+|+.||.|+|||+.... .....+.+|.+.|.+|+|+| ++.+|++++.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 45678999999999999 56799999999999999987543 34455678999999999998 78999999999999999
Q ss_pred ECCCCceEEEEecc--CccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCC-EEEEEec
Q psy4869 433 DLEKGQRIKKMKGH--STFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAE-CVLTGGI 509 (2435)
Q Consensus 433 d~~tg~~v~~l~~h--~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~-~l~sgs~ 509 (2435)
|++++........| ...+.+++|++++ .+|++|+.|+.|++||++.........|...|.+++|+|+++ +|++|+.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 99766543333333 3456778888877 578899999999999997654433346788999999999886 7889999
Q ss_pred CCeEEEEECCCCcEEEE---EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc--cCe
Q psy4869 510 DNDIKMWDLRTNSVVQK---LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE--KNL 584 (2435)
Q Consensus 510 dg~V~lwD~~s~~~v~~---l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~--~~i 584 (2435)
||.|++||+++.+.... ..+|...|++++|+|||++|++++.|++|+|||++. ..+...+..|..... ..+
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~----~~~~~~~~~~~~~~~~~~~~ 347 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ----WDCPLGLIPHPHRHFQHLTP 347 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSS----SSSEEEECCCCCCCCSSSCC
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCC----CccceEEeccccccccccee
Confidence 99999999998765433 367999999999999999999999999999999984 445555555543211 123
Q ss_pred EEEEEcCCCCEEEEec------------CCCeEEEEECCCCcEEEEec-CCCCCeeEE-EEcCCCCEEEEEECCCcEEEe
Q psy4869 585 LRCAWSVSGLYVTAGS------------ADKCVYIWDTTTRRIAYKLP-GHNGSVNDV-QFHPKEPIIMSASSDKTIYLG 650 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs------------~Dg~V~iwd~~s~~~~~~l~-~h~~~V~~l-~fspd~~~Lasgs~Dg~I~vW 650 (2435)
..+.|+|++.++++++ .++.|++||..+++++..+. +|...|.++ +|+|++++|++|+ |+.|++|
T Consensus 348 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 348 IKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp CBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred EEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 4567777777766654 24579999999999988875 688889987 6999999999876 8899999
Q ss_pred cCC
Q psy4869 651 ESP 653 (2435)
Q Consensus 651 d~~ 653 (2435)
++.
T Consensus 427 ~~~ 429 (435)
T 4e54_B 427 SQQ 429 (435)
T ss_dssp CCC
T ss_pred ECC
Confidence 986
No 120
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.7e-30 Score=329.71 Aligned_cols=288 Identities=12% Similarity=0.172 Sum_probs=230.9
Q ss_pred CCcEEEEEECCCCCEEEEEeCC-------CeEEEEecCCcee---------eEEEeeCCCCCeeEEEEccCCCEEEEEe-
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYD-------RQIFIWSVYGECE---------NIGVMSGHTGAVMDLKFSTDGCHIFTCS- 424 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~D-------g~I~iwd~~~~~~---------~~~~l~~h~~~V~~l~~s~dg~~L~s~s- 424 (2435)
.-+|++++|+|||++|++|+.| +.|++|++..... ....+.+|...|.+++++ +..++++.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence 4589999999999999999754 3699999864321 123467888999988875 45666653
Q ss_pred ----------CCCeEEEEECCCCceEEE----Ee-----ccCccccccCcccCCCeEE-EEEeCCCeEEEEeCCCCcceE
Q psy4869 425 ----------TDQTLAVWDLEKGQRIKK----MK-----GHSTFVNSCDPVRRGQLLI-ASGSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 425 ----------~Dg~I~vwd~~tg~~v~~----l~-----~h~~~v~sv~~~~~~~~ll-asgs~Dg~I~vwD~~~~~~~~ 484 (2435)
.|+.+++|++.++..... .. .+...+..++|+|++..++ ++++.|++|++||+++++.+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 467899999876542221 11 2344577899999997764 567789999999999999999
Q ss_pred eecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC----cEEEE
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN----TVRIW 558 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg----~I~lW 558 (2435)
.+.+...|.+++|+|+|+++++++. +.+.+|+..+++.+.. ..+|...|.+++|+||++++++++.|+ .+++|
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~ 250 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI 250 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence 9989999999999999999999884 5577777777766543 357888999999999999999999887 68889
Q ss_pred EcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEe-cCCCCCeeEEEEcCCCCE
Q psy4869 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKL-PGHNGSVNDVQFHPKEPI 637 (2435)
Q Consensus 559 dl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l-~~h~~~V~~l~fspd~~~ 637 (2435)
|+............+.+|. ..|.+++|+|||++||+|+.|+.|+|||+++++++..+ .+|...|++|+|+||+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~----~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 251 SIKSGNTSVLRSKQVTNRF----KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp EEETTEEEEEEEEEEESSC----SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred ccccceecceeeeeecCCC----CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 9874321112233444553 47899999999999999999999999999999999875 789999999999999999
Q ss_pred EEEEECCCcEEEecCCCcc
Q psy4869 638 IMSASSDKTIYLGESPLHC 656 (2435)
Q Consensus 638 Lasgs~Dg~I~vWd~~~~~ 656 (2435)
||+||.|++|+||+++...
T Consensus 327 laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 327 VASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EEEEETTSEEEEEECCTTT
T ss_pred EEEEeCCCeEEEEEcCCCC
Confidence 9999999999999998443
No 121
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.4e-31 Score=337.52 Aligned_cols=289 Identities=14% Similarity=0.133 Sum_probs=231.9
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
+++.|.++|++++|+|+|++|++|+.||.|++||+.... .....+.+|.+.|.+++|+|++++|++++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 455678899999999999999999999999999998653 5566788999999999999999999999999999999999
Q ss_pred CCc---eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc---eEee-c-CcccEEEEEECCCCCEEEEE
Q psy4869 436 KGQ---RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ---AVSM-N-NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 436 tg~---~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~---~~~~-~-~~~~v~sv~~sp~g~~l~sg 507 (2435)
+++ ....+.+|...|.+++|+|++ .+|++++.|+.|++||++.++. ...+ . |...|.+++|+|++++|++|
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 887 677888999999999999976 5678899999999999998763 4444 3 78899999999999999999
Q ss_pred ecCCeEEEEECC------------------CCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce
Q psy4869 508 GIDNDIKMWDLR------------------TNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC 569 (2435)
Q Consensus 508 s~dg~V~lwD~~------------------s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~ 569 (2435)
+.||.|++||++ .++++..+ +|.+.|.+++|+|+|++|++++.|++|++||++........
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566667 89999999999999999999999999999999864322222
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CC-----------------------------------
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TR----------------------------------- 613 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~----------------------------------- 613 (2435)
+..+.+|. ..+.+++|+|+|++|++|+.|+.+ +|+.. .+
T Consensus 244 ~~~~~~~~----~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (377)
T 3dwl_C 244 LITVKLSQ----LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFT 318 (377)
T ss_dssp CCCEECSS----SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------
T ss_pred eEeecCCC----CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccc
Confidence 55666664 478999999999999999877766 66543 21
Q ss_pred ---cEEE-------------EecCCCCCeeEEEEcCCCC----EEEEEECCCcEEEecC
Q psy4869 614 ---RIAY-------------KLPGHNGSVNDVQFHPKEP----IIMSASSDKTIYLGES 652 (2435)
Q Consensus 614 ---~~~~-------------~l~~h~~~V~~l~fspd~~----~Lasgs~Dg~I~vWd~ 652 (2435)
.... ....|.+.|+++++.+... .|++||.||.|++||+
T Consensus 319 ~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 319 ALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 0113999999999876543 6999999999999985
No 122
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=325.62 Aligned_cols=336 Identities=19% Similarity=0.236 Sum_probs=243.4
Q ss_pred ceeEecccCCcEEEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEe------------eCCCCCeeEEEEcc-CCCE
Q psy4869 354 PIMLLEGHGGEIFCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVM------------SGHTGAVMDLKFST-DGCH 419 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l------------~~h~~~V~~l~~s~-dg~~ 419 (2435)
...++.+|.+.|++++|+| ++++|++|+.||.|++||+.......... .+|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3457789999999999999 99999999999999999987542211111 35999999999999 7789
Q ss_pred EEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCC--eEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ--LLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVA 496 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~--~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~ 496 (2435)
|++++.|+.|++||+.+++.+..+. +...+.++.+.+.+. .++++++.|+.|++||+++++.+..+. +...|.+++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999998888776 666778888877643 488999999999999999988887774 788999999
Q ss_pred ECCCCC-EEEEEecCCeEEEEECCCCc-EEEEE---------------ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 497 FNDTAE-CVLTGGIDNDIKMWDLRTNS-VVQKL---------------RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 497 ~sp~g~-~l~sgs~dg~V~lwD~~s~~-~v~~l---------------~~h~~~V~~i~~spdg~~las~s~Dg~I~lWd 559 (2435)
|+|+++ +|++|+.||.|++||++++. .+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999999 58999999999999998875 44444 57889999999999999999999999999999
Q ss_pred cCCCCCCCceEEEEeCcccccc-cCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEE
Q psy4869 560 IRPYVPGERCVKVMSGHQHNFE-KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPII 638 (2435)
Q Consensus 560 l~~~~~~~~~v~~~~~h~~~~~-~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~L 638 (2435)
++... ....+.++..... ..+........+..++.++.|+.|++||+.+++++..+.+|.+.|++++|+|++++|
T Consensus 274 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 349 (408)
T 4a11_B 274 SSNGE----NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQEL 349 (408)
T ss_dssp TTTCC----BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEE
T ss_pred CCCCc----cceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEE
Confidence 98532 2222222111111 111122223345667777889999999999999999999999999999999999999
Q ss_pred EEEECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeecc
Q psy4869 639 MSASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCT 698 (2435)
Q Consensus 639 asgs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 698 (2435)
++|+.||.|++|++.......... ...................+.++.+.+|....
T Consensus 350 ~s~~~dg~i~iw~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 350 YSGSRDCNILAWVPSLYEPVPDDD----ETTTKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp EEEETTSCEEEEEECC--------------------------------------------
T ss_pred EEECCCCeEEEEeCCCCCccCCCC----ceEeccccccccceeecccCccCceeecCCcc
Confidence 999999999999997433221110 00011111222334455666777888886543
No 123
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=2.1e-29 Score=313.00 Aligned_cols=252 Identities=20% Similarity=0.322 Sum_probs=213.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEE
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIW 188 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iW 188 (2435)
..+.+|.+.|++++|+|+|++||+|+.|++|+|||+... +.+.++.+|.++|.+++|+++.++.+|++|+.|++|+||
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999999753 567899999999999999865446789999999999999
Q ss_pred eccCCc--cccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCcee
Q psy4869 189 DADTGD--CFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTV 264 (2435)
Q Consensus 189 d~~tg~--~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (2435)
|+++++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.....
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-------------------------- 136 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-------------------------- 136 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB--------------------------
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce--------------------------
Confidence 999885 56677889999999999997 889999999999999998742100
Q ss_pred eeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeeccc
Q psy4869 265 SKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKD 344 (2435)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~ 344 (2435)
T Consensus 137 -------------------------------------------------------------------------------- 136 (297)
T 2pm7_B 137 -------------------------------------------------------------------------------- 136 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccccceeEecccCCcEEEEEECCC-------------CCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCCe
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPD-------------GQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGAV 408 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspd-------------g~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~V 408 (2435)
....+.+|...|.+++|+|+ +++|++|+.|+.|++||++... .....+.+|...|
T Consensus 137 ---------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V 207 (297)
T 2pm7_B 137 ---------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV 207 (297)
T ss_dssp ---------CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE
T ss_pred ---------eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCce
Confidence 00124578888888999886 5799999999999999987543 2445788999999
Q ss_pred eEEEEccCC---CEEEEEeCCCeEEEEECCCCc--e-EEEE--eccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 409 MDLKFSTDG---CHIFTCSTDQTLAVWDLEKGQ--R-IKKM--KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 409 ~~l~~s~dg---~~L~s~s~Dg~I~vwd~~tg~--~-v~~l--~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
.+++|+|++ .+|++++.|+.|++||++++. . ...+ ..|...+.+++|+|++ .+|++++.|+.|++|+..
T Consensus 208 ~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 208 RDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSS-CCEEEEETTSCEEEEEEC
T ss_pred EEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCC-CEEEEEcCCCcEEEEEEC
Confidence 999999984 799999999999999997743 2 2233 4678889999999987 467889999999999976
No 124
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=4.3e-29 Score=324.41 Aligned_cols=287 Identities=20% Similarity=0.358 Sum_probs=253.2
Q ss_pred EEEecCCCc--EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccccc-ccceEEEEEEEeCCCeEEEeeCCCcEEE
Q psy4869 153 HRLSGHKGV--ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAA-HLTEVWGVCVMREDSYLISGSNDAELKV 229 (2435)
Q Consensus 153 ~~l~gH~~~--V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~-h~~~V~~l~~~p~~~~l~s~s~Dg~v~v 229 (2435)
....+|... +.++.|+ ++ .+++++.|+.|++||+.+|+....+.. |...|.+++|+|++++|++|+.||.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~s--~~--~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWS--NL--NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EECTTCCCCTTCBCEEEC--TT--SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeCCCCcCCceEEEEeec--CC--CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 334577665 5557775 22 378899999999999999998877755 8899999999999999999999999999
Q ss_pred EEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCcccccc
Q psy4869 230 WNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGI 309 (2435)
Q Consensus 230 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2435)
||+.+++.
T Consensus 161 wd~~~~~~------------------------------------------------------------------------ 168 (401)
T 4aez_A 161 YDVESQTK------------------------------------------------------------------------ 168 (401)
T ss_dssp EETTTCCE------------------------------------------------------------------------
T ss_pred EECcCCeE------------------------------------------------------------------------
Confidence 99874310
Q ss_pred chhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Q psy4869 310 DTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIW 389 (2435)
Q Consensus 310 ~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iw 389 (2435)
...+.+|...|.+++| ++++|++|+.||.|++|
T Consensus 169 ---------------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 201 (401)
T 4aez_A 169 ---------------------------------------------LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH 201 (401)
T ss_dssp ---------------------------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred ---------------------------------------------EEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEE
Confidence 0124578899999999 56899999999999999
Q ss_pred ecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEe--
Q psy4869 390 SVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGS-- 467 (2435)
Q Consensus 390 d~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs-- 467 (2435)
|++........+.+|.+.|.+++|+|++.+|++++.|+.|++||+++++.+..+.+|...|.+++|+|++..++++++
T Consensus 202 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs 281 (401)
T 4aez_A 202 DVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT 281 (401)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT
T ss_pred ecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCC
Confidence 998666667788999999999999999999999999999999999999999999999999999999999989999876
Q ss_pred CCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE--ecCCeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCC
Q psy4869 468 DDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG--GIDNDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDG 543 (2435)
Q Consensus 468 ~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg--s~dg~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg 543 (2435)
.|+.|++||+++++....+.+...+.+++|+|++++++++ +.||.|++||+++++... .+.+|.+.|.+++|+|+|
T Consensus 282 ~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 282 MDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp TTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred CCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 8999999999999999999888999999999999999994 489999999999976554 467999999999999999
Q ss_pred CEEEEEECCCcEEEEEcCC
Q psy4869 544 SYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~ 562 (2435)
++|++++.||.|++||+..
T Consensus 362 ~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 362 RILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SEEEEECTTSEEEEEECCC
T ss_pred CEEEEEeCCCcEEEEECCC
Confidence 9999999999999999985
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-31 Score=339.22 Aligned_cols=315 Identities=9% Similarity=0.055 Sum_probs=252.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCc
Q psy4869 115 GHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGD 194 (2435)
Q Consensus 115 gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~ 194 (2435)
.-...|.+|+|+|||+++||||.|++|+ |....+ .+.+|.+.|++|+|+|+. .|+.+.+|+.+..
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~~- 77 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE---------FENKLDFELAQQN- 77 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCSS-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC---------CcceEEEEeCCCc-
Confidence 3468899999999999999999999999 754444 337999999999999743 4565555554322
Q ss_pred cccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecc
Q psy4869 195 CFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINE 274 (2435)
Q Consensus 195 ~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 274 (2435)
.+.++ .|...|.+++|+|+|.+|++++.||+|++||... .+
T Consensus 78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l------------------------------------ 118 (588)
T 2j04_A 78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--ML------------------------------------ 118 (588)
T ss_dssp CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EE------------------------------------
T ss_pred eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--ee------------------------------------
Confidence 23333 5588999999999999999999999999998431 00
Q ss_pred cccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccc
Q psy4869 275 LKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAP 354 (2435)
Q Consensus 275 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p 354 (2435)
T Consensus 119 -------------------------------------------------------------------------------- 118 (588)
T 2j04_A 119 -------------------------------------------------------------------------------- 118 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeEecccC-----CcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee------eEEEe----eCCCCCeeEEEEccCCCE
Q psy4869 355 IMLLEGHG-----GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE------NIGVM----SGHTGAVMDLKFSTDGCH 419 (2435)
Q Consensus 355 ~~~l~gH~-----~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~------~~~~l----~~h~~~V~~l~~s~dg~~ 419 (2435)
..+. |. ..|.+++|+|||++||+|+.||+|+|||+.++.. .+..+ .+|.+.|.+++|+|||
T Consensus 119 -~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-- 194 (588)
T 2j04_A 119 -TNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-- 194 (588)
T ss_dssp -EECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--
T ss_pred -eecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--
Confidence 0011 22 3588999999999999999999999999987532 34554 6788999999999999
Q ss_pred EEEEeCCCeEEEEECCCCc---eEEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc-eEeecCcccEEE
Q psy4869 420 IFTCSTDQTLAVWDLEKGQ---RIKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ-AVSMNNTYQVTS 494 (2435)
Q Consensus 420 L~s~s~Dg~I~vwd~~tg~---~v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~-~~~~~~~~~v~s 494 (2435)
+++++.|+.|++||+.+++ ..++++ +|...|.+++|+ + ..+++++ ++.|++||+..++. .....|...+..
T Consensus 195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~ 270 (588)
T 2j04_A 195 LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHI 270 (588)
T ss_dssp EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCE
T ss_pred EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEE
Confidence 8899999999999998877 345674 788999999998 4 5677776 69999999998887 555588899999
Q ss_pred EEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE
Q psy4869 495 VAF--NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 495 v~~--sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
++| +|++..+++++.||. ++|..+ .++++||+..+++. |+++++|+... .....
T Consensus 271 va~~~s~d~~~La~a~edG~-klw~~d----------------~~~~spd~~l~a~~--d~~v~lW~~~g-----~~l~~ 326 (588)
T 2j04_A 271 IPLNHEKESTILLMSNKTSY-KVLLED----------------ELHVTADNIIAPYL--EKKFKKWSTIW-----NEFNN 326 (588)
T ss_dssp EEETTCSSCEEEEECSSCEE-EEEESS----------------SEEEECCCSSHHHH--HHHHHHTTTTT-----TSSSS
T ss_pred EEeeeCCCCCEEEEEcCCCC-EEEeec----------------cEEECCCceEEEEc--CCEEEEEECCC-----Cceee
Confidence 999 999999999999999 999987 26699999888875 99999999752 11222
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEec
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
+.+ ...|.+++|+|||+.+|+++
T Consensus 327 ~~~-----~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 327 YET-----TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SCC-----EEEEEEEEECTTSSEEEEEE
T ss_pred ecc-----ceEEEEEEECCCCCEEEEEE
Confidence 222 23688999999999999986
No 126
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1e-28 Score=322.95 Aligned_cols=280 Identities=23% Similarity=0.446 Sum_probs=246.6
Q ss_pred cEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 161 VITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 161 ~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
-...|+|++ + ++|+ .+.|++|+|||.++|++++.+ .+|...|.+|+|+|+|++|++|+.||+|++||+++++.
T Consensus 107 y~~~l~wS~--~-n~lA-vgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~- 181 (420)
T 4gga_A 107 YLNLVDWSS--G-NVLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR- 181 (420)
T ss_dssp TCBCEEECT--T-SEEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred cceeEEECC--C-CEEE-EEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-
Confidence 356799974 2 3554 456999999999999987765 57888999999999999999999999999999875310
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 182 -------------------------------------------------------------------------------- 181 (420)
T 4gga_A 182 -------------------------------------------------------------------------------- 181 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeE
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENI 398 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~ 398 (2435)
...+.+|...|.++.+ ++.+|++|+.|+.+++||........
T Consensus 182 ------------------------------------~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 182 ------------------------------------LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp ------------------------------------EEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred ------------------------------------EEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccceee
Confidence 1134578888988887 47899999999999999998777777
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc----eEEEEeccCccccccCcccCCCeEEEE--EeCCCeE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRRGQLLIAS--GSDDCTV 472 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~~~~llas--gs~Dg~I 472 (2435)
..+.+|...+..+.|+++++++++++.|+.+++||..+++ .+.....|...|.++.|+|.+..++++ |+.|+.|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 8899999999999999999999999999999999998765 456777899999999999998888766 4589999
Q ss_pred EEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE
Q psy4869 473 KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG--IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 473 ~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs--~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s 550 (2435)
++||++++.....+.....+.++.|+|+++.+++++ .||.|+|||+++++++..+.+|.+.|++|+|+|||++|++|+
T Consensus 304 ~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 999999999999998889999999999999998875 689999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCC
Q psy4869 551 MDNTVRIWDIRPY 563 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~ 563 (2435)
.|++|+|||+...
T Consensus 384 ~D~tvriWdv~~~ 396 (420)
T 4gga_A 384 ADETLRLWRCFEL 396 (420)
T ss_dssp TTTEEEEECCSCS
T ss_pred cCCeEEEEECCCC
Confidence 9999999999754
No 127
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.6e-29 Score=322.65 Aligned_cols=281 Identities=18% Similarity=0.351 Sum_probs=242.1
Q ss_pred cccCCcEE--EEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 359 EGHGGEIF--CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 359 ~gH~~~V~--~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
.+|...+. ++.|+ +..+++++.||.|++||+..+.........|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 36766644 45555 466888999999999999876544444445899999999999999999999999999999999
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-CcceEee-cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-KNQAVSM-NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
++.+..+.+|...|.++.|. +.++++++.|+.|++||++. ......+ .|...|.+++|+|++++|++|+.||.|+
T Consensus 166 ~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 166 QTKLRTMAGHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp CCEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CeEEEEecCCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 99999999999999999983 35899999999999999984 4444444 5888999999999999999999999999
Q ss_pred EEECCCCcEEEEEecCCCCEEEEEEcCCCC-EEEEEE--CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC
Q psy4869 515 MWDLRTNSVVQKLRGHSDTVTGLSLSPDGS-YILSNA--MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV 591 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h~~~V~~i~~spdg~-~las~s--~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp 591 (2435)
+||+++++.+..+.+|...|.+++|+|++. ++++++ .|+.|++||++. .+++..+..+ ..+.+++|+|
T Consensus 243 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~----~~~~~~~~~~-----~~v~~~~~s~ 313 (401)
T 4aez_A 243 IWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT----GARVNTVDAG-----SQVTSLIWSP 313 (401)
T ss_dssp EEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT----CCEEEEEECS-----SCEEEEEECS
T ss_pred EccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC----CCEEEEEeCC-----CcEEEEEECC
Confidence 999999999999999999999999999765 555655 799999999984 5666666533 3789999999
Q ss_pred CCCEEEE--ecCCCeEEEEECCCCcEE--EEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 592 SGLYVTA--GSADKCVYIWDTTTRRIA--YKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 592 dg~~Las--gs~Dg~V~iwd~~s~~~~--~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|++|++ |+.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++|++.
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 9999999 568999999999987554 4467999999999999999999999999999999997
No 128
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=8.6e-29 Score=307.53 Aligned_cols=253 Identities=26% Similarity=0.420 Sum_probs=213.8
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE-CENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~-~~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
.++.+|.+.|++++|+|+|++||+|+.|+.|+|||+... ...+..+.+|.+.|.+++|++ ++++|++++.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 467899999999999999999999999999999998743 345677899999999999986 48999999999999999
Q ss_pred ECCCCc--eEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcc---eEeecCcccEEEEEECCC------
Q psy4869 433 DLEKGQ--RIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQ---AVSMNNTYQVTSVAFNDT------ 500 (2435)
Q Consensus 433 d~~tg~--~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~---~~~~~~~~~v~sv~~sp~------ 500 (2435)
|+++++ .+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++.+.. .....|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998874 567788999999999999973 46889999999999999987632 223367889999999997
Q ss_pred -------CCEEEEEecCCeEEEEECCCCc----EEEEEecCCCCEEEEEEcCCC---CEEEEEECCCcEEEEEcCCCCCC
Q psy4869 501 -------AECVLTGGIDNDIKMWDLRTNS----VVQKLRGHSDTVTGLSLSPDG---SYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 501 -------g~~l~sgs~dg~V~lwD~~s~~----~v~~l~~h~~~V~~i~~spdg---~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
+++|++|+.|+.|++||+++++ ....+.+|.+.|.+|+|+|++ ++|++++.|++|+|||++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~- 241 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG- 241 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS-
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC-
Confidence 5799999999999999998876 667889999999999999985 8999999999999999975211
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
......+..+ .....+.+++|+|+|++|++++.|+.|+||+..
T Consensus 242 ~~~~~~~~~~--~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 242 PWKKTLLKEE--KFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CCEEEESSSS--CCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ccceeeeecc--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 1112222111 124578999999999999999999999999976
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.97 E-value=2e-27 Score=346.45 Aligned_cols=511 Identities=13% Similarity=0.076 Sum_probs=371.1
Q ss_pred ceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC----C--e
Q psy4869 25 NVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN----G--S 98 (2435)
Q Consensus 25 ~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~----G--~ 98 (2435)
-+...+ |+ |+.||....+.|.+||+..++. ..+.+|...+.+++|+|||++||.+..+ | .
T Consensus 16 ~~~~~~-~S--~~~iaf~~~~~l~~~~~~gg~~-----------~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 16 LLLNPD-IH--GDRIIFVCCDDLWEHDLKSGST-----------RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp CCEEEE-EE--TTEEEEEETTEEEEEETTTCCE-----------EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEE
T ss_pred eEeCcE-Ee--CCEEEEEECCcEEEEECCCCcE-----------EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCe
Confidence 344443 45 4688888778999999876542 2344566778899999999999988643 3 6
Q ss_pred EEEEECCCCCeEEEecCCCCCE-------EEEEEcCCCCEEEEEeCC------CCEEEEEccCCeeEEEEecCCCcEEEE
Q psy4869 99 LKTFSLDTTDVISTFTGHKSAI-------TVIQYDPLGHRLATGSKD------TDIVLWDVVAECGLHRLSGHKGVITDI 165 (2435)
Q Consensus 99 i~i~d~~~~~~~~~l~gH~~~V-------~~l~f~p~g~~laSgs~D------g~I~iWd~~~~~~~~~l~gH~~~V~~v 165 (2435)
|++|++.+++ ...+.+|...+ .+++|+|+|+++++++.| ..|.+||+.++... .+..+. ...+
T Consensus 82 i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~~--~~~~ 157 (1045)
T 1k32_A 82 LYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLGP--ATHI 157 (1045)
T ss_dssp EEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSCS--CSEE
T ss_pred EEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCCC--ccee
Confidence 9999998876 67889999998 999999999988888865 35777887776643 333332 3456
Q ss_pred EEeecCCCcEEEEEeC------------CCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcC
Q psy4869 166 RFMSQPGHHFVVSSAK------------DTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVR 233 (2435)
Q Consensus 166 ~~~~~~~~~~l~S~s~------------Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~ 233 (2435)
+|+| + ++++++. +...++|....+.....+.+|.+.+.++.|+++ .++++++.|+++++|.+.
T Consensus 158 ~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~ 232 (1045)
T 1k32_A 158 LFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTD 232 (1045)
T ss_dssp EEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEE
T ss_pred eeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEe
Confidence 7885 4 7888753 445778865544556667899999999999987 667788889999999765
Q ss_pred CCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhh
Q psy4869 234 DRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQ 313 (2435)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (2435)
.....
T Consensus 233 ~~g~~--------------------------------------------------------------------------- 237 (1045)
T 1k32_A 233 LDGKD--------------------------------------------------------------------------- 237 (1045)
T ss_dssp TTSCS---------------------------------------------------------------------------
T ss_pred CCCCc---------------------------------------------------------------------------
Confidence 21000
Q ss_pred hhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC
Q psy4869 314 ELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG 393 (2435)
Q Consensus 314 ~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~ 393 (2435)
...+.+|. .+.+.+|+|||++|+.+ .++.|++||+..
T Consensus 238 -----------------------------------------~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 238 -----------------------------------------LRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp -----------------------------------------CEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred -----------------------------------------ceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 00111222 23456899999999887 589999999843
Q ss_pred ceeeEEEeeC-----------CCCCeeEEEEc-cCCCEEEEEeCCCeEEEEECCCCceEEEEeccCc-cccccCcccCCC
Q psy4869 394 ECENIGVMSG-----------HTGAVMDLKFS-TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHST-FVNSCDPVRRGQ 460 (2435)
Q Consensus 394 ~~~~~~~l~~-----------h~~~V~~l~~s-~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~-~v~sv~~~~~~~ 460 (2435)
. .+..+.. |...+..++|+ |||++|+.++ ++.|++|++.+++.. .+..|.. .+..+.|+ ++
T Consensus 275 ~--~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg- 348 (1045)
T 1k32_A 275 E--KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TK- 348 (1045)
T ss_dssp C--CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SE-
T ss_pred e--EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CC-
Confidence 2 2223433 34579999999 9999999888 789999999877654 4666766 78899999 66
Q ss_pred eEEEEEeCCCeEE-EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEE
Q psy4869 461 LLIASGSDDCTVK-VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSL 539 (2435)
Q Consensus 461 ~llasgs~Dg~I~-vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~ 539 (2435)
..++.++.+..+. +||+..++......+...+..++|+|+|++|++++.++.|++||+.+++....+.+|.+.+.+++|
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~ 428 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 428 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEE
T ss_pred CeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEE
Confidence 4566667788888 999987765444456678999999999999999999999999999999988888889999999999
Q ss_pred cCCCCEEEEEECCC----------cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEE
Q psy4869 540 SPDGSYILSNAMDN----------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWD 609 (2435)
Q Consensus 540 spdg~~las~s~Dg----------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd 609 (2435)
+|||++|++++.++ .|++||+.. .+ +..+..|. ..+..+.|+|||++|+.++.++...+|+
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~----g~-~~~l~~~~----~~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG----RK-IFAATTEN----SHDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT----TE-EEECSCSS----SBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCC----Cc-EEEeeCCC----cccCCceEcCCCCEEEEEecccCCcCcc
Confidence 99999999887654 999999973 33 44555443 3567899999999999999877766665
Q ss_pred CCCCc-------------------------------------------EEEEecCCCCCeeEEEEcCCCCEEEE------
Q psy4869 610 TTTRR-------------------------------------------IAYKLPGHNGSVNDVQFHPKEPIIMS------ 640 (2435)
Q Consensus 610 ~~s~~-------------------------------------------~~~~l~~h~~~V~~l~fspd~~~Las------ 640 (2435)
..... .+..+..|.+.+..++|+||+.++++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~ 579 (1045)
T 1k32_A 500 RVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE 579 (1045)
T ss_dssp SSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCS
T ss_pred hhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCc
Confidence 43221 12334457788999999999987775
Q ss_pred -------EECCCcEEEecCCCccccCcceeecCceeeEEEecCCCCeEEEEecCCceEEeeeecc
Q psy4869 641 -------ASSDKTIYLGESPLHCDKAGSILRSGKGRVHTMVNDKHRQILCCHGNDNVVDLFYFCT 698 (2435)
Q Consensus 641 -------gs~Dg~I~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 698 (2435)
...+..|++||+..... ..+. ..+..+..+.+++.|+.+..+ .+.+|....
T Consensus 580 ~~~~~~~~~~~~~l~~~d~~~~~~---~~l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~ 637 (1045)
T 1k32_A 580 FAAYYQGAPEKGVLLKYDVKTRKV---TEVK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 637 (1045)
T ss_dssp HHHHHHCCCCCEEEEEEETTTCCE---EEEE---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred ccccccccCCCceEEEEECCCCcE---EEee---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence 12245677777753221 1111 334444455555555555555 577777654
No 130
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9.3e-29 Score=312.82 Aligned_cols=289 Identities=12% Similarity=0.121 Sum_probs=251.7
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce--eeEEEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC--ENIGVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWD 433 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~--~~~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd 433 (2435)
+..+|.+.|++++|+|++++|++|+.||.|++||+.... .....+.+|...|.+++|+|+++ +|++++.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 346899999999999999999999999999999987543 23445668999999999999999 999999999999999
Q ss_pred C-CCCceEEEEec--cCccccccCcccCCCeEEEEEeCCCeEEEEeCCC---------CcceEeecCcccEEEEEECCCC
Q psy4869 434 L-EKGQRIKKMKG--HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK---------KNQAVSMNNTYQVTSVAFNDTA 501 (2435)
Q Consensus 434 ~-~tg~~v~~l~~--h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~---------~~~~~~~~~~~~v~sv~~sp~g 501 (2435)
+ .+++. ..+.+ |...|.++.|.+ ..++++++.|+.|++||++. ++.+..+.+...+.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 9 87765 77788 999999999999 46788999999999999987 7777777788999999999987
Q ss_pred CEEEEEecCCeEEEEECCC-Cc--EEEEEecCCCCEEEEEEcC-CCCEEEEEECCCcEEEEEcCCC--CCCCceEEEEeC
Q psy4869 502 ECVLTGGIDNDIKMWDLRT-NS--VVQKLRGHSDTVTGLSLSP-DGSYILSNAMDNTVRIWDIRPY--VPGERCVKVMSG 575 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s-~~--~v~~l~~h~~~V~~i~~sp-dg~~las~s~Dg~I~lWdl~~~--~~~~~~v~~~~~ 575 (2435)
+++++.||.|++||+++ +. .......|...|.+++|+| ++++|++++.||.|++||++.. ....+....+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 54 3445567889999999999 9999999999999999999853 111356677777
Q ss_pred cccc-----cccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC-CCCeeEEEEcCCCCEEEEEECCCc-EE
Q psy4869 576 HQHN-----FEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH-NGSVNDVQFHPKEPIIMSASSDKT-IY 648 (2435)
Q Consensus 576 h~~~-----~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h-~~~V~~l~fspd~~~Lasgs~Dg~-I~ 648 (2435)
|... ....+.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|++++ |++++|++|+.||. .+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~ 318 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKT 318 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccc
Confidence 6431 1237899999999999999999999999999999999999998 99999999 99999999999998 66
Q ss_pred EecC
Q psy4869 649 LGES 652 (2435)
Q Consensus 649 vWd~ 652 (2435)
.|+.
T Consensus 319 ~~~~ 322 (342)
T 1yfq_A 319 NAAI 322 (342)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6654
No 131
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.2e-28 Score=324.43 Aligned_cols=285 Identities=18% Similarity=0.369 Sum_probs=235.0
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce----------eeEEEeeCCC------------CCeeEEEEccCC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----------ENIGVMSGHT------------GAVMDLKFSTDG 417 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----------~~~~~l~~h~------------~~V~~l~~s~dg 417 (2435)
.|.+.|++++|+|+|++||+|+.||.|+|||+.... .....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999987543 2466788998 899999999998
Q ss_pred --CEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-EeccCccccccCc
Q psy4869 418 --CHIFTCSTDQTLAVWDLEKGQRI---------------------------------------KK-MKGHSTFVNSCDP 455 (2435)
Q Consensus 418 --~~L~s~s~Dg~I~vwd~~tg~~v---------------------------------------~~-l~~h~~~v~sv~~ 455 (2435)
.+|++++.|+.|++||+.+++.. .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3679999999999
Q ss_pred ccCCCeEEEEEeCCCeEEEEeCCC-CcceEe-------e-cCcccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcE--
Q psy4869 456 VRRGQLLIASGSDDCTVKVWDPRK-KNQAVS-------M-NNTYQVTSVAFNDTA-ECVLTGGIDNDIKMWDLRTNSV-- 523 (2435)
Q Consensus 456 ~~~~~~llasgs~Dg~I~vwD~~~-~~~~~~-------~-~~~~~v~sv~~sp~g-~~l~sgs~dg~V~lwD~~s~~~-- 523 (2435)
+|++. +|++| .|+.|++||++. +..... + .|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99875 56677 799999999984 333332 1 577789999999998 9999999999999999999887
Q ss_pred --EEEEecCCC------------CEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccc--------
Q psy4869 524 --VQKLRGHSD------------TVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFE-------- 581 (2435)
Q Consensus 524 --v~~l~~h~~------------~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~-------- 581 (2435)
+..+.+|.+ .|.+++|+|+|++|++++. +.|++||++. ..+++..+.+|.....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~---~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM---ENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC---CSSCSCCEESCGGGTTTHHHHHHT
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC---Cccccceeeccccccccccccccc
Confidence 788888886 9999999999999999999 9999999984 2456667777753211
Q ss_pred ---cCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC---------------------------------CCCC
Q psy4869 582 ---KNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG---------------------------------HNGS 625 (2435)
Q Consensus 582 ---~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~---------------------------------h~~~ 625 (2435)
..+..++|+|+|++|++|+.||.|++||+.+++.+. +.+ +...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 013458999999999999999999999999988763 222 3456
Q ss_pred eeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 626 VNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
|..++|+|++++||+++.++ +++|+.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred eeEEEECCCCCEEEEEecce-eeeecc
Confidence 88999999999999998886 777764
No 132
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3.3e-28 Score=304.21 Aligned_cols=279 Identities=22% Similarity=0.436 Sum_probs=240.7
Q ss_pred EEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCcc
Q psy4869 162 ITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDID 239 (2435)
Q Consensus 162 V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~ 239 (2435)
..+|+|+++ + +|+ .+.|++|+|||+++|++++.+ .+|...|.+++|+|++++|++|+.|++|++||+++++.
T Consensus 28 ~~~l~WS~~--~-~lA-vg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~-- 101 (318)
T 4ggc_A 28 LNLVDWSSG--N-VLA-VALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-- 101 (318)
T ss_dssp CBCEEECTT--S-EEE-EEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--
T ss_pred ceEEEECCC--C-EEE-EEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee--
Confidence 467999843 3 454 456999999999999988766 57888999999999999999999999999999875321
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
T Consensus 102 -------------------------------------------------------------------------------- 101 (318)
T 4ggc_A 102 -------------------------------------------------------------------------------- 101 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEE
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 399 (2435)
...+.+|...+.++.+ ++.++++|+.++.+++|+.........
T Consensus 102 -----------------------------------~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~ 144 (318)
T 4ggc_A 102 -----------------------------------LRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVA 144 (318)
T ss_dssp -----------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred -----------------------------------EEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEE
Confidence 0123467777766555 568999999999999999988777788
Q ss_pred EeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce----EEEEeccCccccccCcccCCCeEE--EEEeCCCeEE
Q psy4869 400 VMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR----IKKMKGHSTFVNSCDPVRRGQLLI--ASGSDDCTVK 473 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~----v~~l~~h~~~v~sv~~~~~~~~ll--asgs~Dg~I~ 473 (2435)
.+.+|...+..+.|.+++++|++++.|+.|++||+++++. ......|...+..+.+.+.+..++ ++++.++.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 8899999999999999999999999999999999987753 345567778888888888877655 5677899999
Q ss_pred EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe--cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG--IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 474 vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs--~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~ 551 (2435)
+||.+.........+...+..+.|+|+++.+++++ .||.|++||+++++++..+.+|.+.|++|+|+|||++|++|+.
T Consensus 225 lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 225 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999888888889999999999999988765 7999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCC
Q psy4869 552 DNTVRIWDIRPY 563 (2435)
Q Consensus 552 Dg~I~lWdl~~~ 563 (2435)
|++|+|||+...
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999999743
No 133
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=3.3e-29 Score=314.22 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=211.1
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC--eEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD--VISTFTGHKSAITVIQYDP--LGHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~--~~~~l~gH~~~V~~l~f~p--~g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|+++|++||+|+.||.|++||+.++. .+..+.||.+.|++++|++ ++++||||+.|++|+|||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456888999999999999999999999999999998874 5678999999999999986 489999999999999999
Q ss_pred ccCC--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc---ccccccccceEEEEEEEeC------
Q psy4869 146 VVAE--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC---FKTMAAHLTEVWGVCVMRE------ 214 (2435)
Q Consensus 146 ~~~~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~---~~~~~~h~~~V~~l~~~p~------ 214 (2435)
+.++ .....+.+|.+.|.+++|+|+..+.+|++++.|++|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 3567889999999999999876577899999999999999988742 4567889999999999987
Q ss_pred -----------CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 215 -----------DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 215 -----------~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
+.+|++|+.|++|++||++....
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~---------------------------------------------- 201 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ---------------------------------------------- 201 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSC----------------------------------------------
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCc----------------------------------------------
Confidence 46899999999999999753210
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
..+...+.+|.+
T Consensus 202 --------------------------------------------------------------------~~~~~~l~~h~~ 213 (316)
T 3bg1_A 202 --------------------------------------------------------------------WKEEQKLEAHSD 213 (316)
T ss_dssp --------------------------------------------------------------------EEEEECCBCCSS
T ss_pred --------------------------------------------------------------------cceeeecccCCC
Confidence 001123568999
Q ss_pred cEEEEEECCCC----CEEEEEeCCCeEEEEecCCc---eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 364 EIFCSKYHPDG----QYIASSGYDRQIFIWSVYGE---CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 364 ~V~~l~fspdg----~~Lasgs~Dg~I~iwd~~~~---~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.|.+++|+|++ .+||+|+.||.|++||+... ......+..|.+.|.+++|+|++++|++++.|+.|++|+..
T Consensus 214 ~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 214 WVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 99999999987 89999999999999998652 11223456789999999999999999999999999999975
No 134
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-30 Score=329.97 Aligned_cols=314 Identities=9% Similarity=0.088 Sum_probs=255.4
Q ss_pred ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCC
Q psy4869 156 SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDR 235 (2435)
Q Consensus 156 ~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~ 235 (2435)
+.-...|.+|+|+| ++.++||+|.|++|+ |...++ ++.+|...|++++|+|+| .|+.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~Sp--DG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWAR--DGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECT--TSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECC--CCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 34567899999984 678999999999999 765554 447999999999999998 4444444432210
Q ss_pred CCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhh
Q psy4869 236 SDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQEL 315 (2435)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 315 (2435)
.
T Consensus 78 ~------------------------------------------------------------------------------- 78 (588)
T 2j04_A 78 G------------------------------------------------------------------------------- 78 (588)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred e-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEe-cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCc
Q psy4869 316 RTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLL-EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE 394 (2435)
Q Consensus 316 ~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l-~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~ 394 (2435)
.+ -+|...|.+++|+|+|.+||+++.||.|++||..+
T Consensus 79 -----------------------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~- 116 (588)
T 2j04_A 79 -----------------------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK- 116 (588)
T ss_dssp -----------------------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-
T ss_pred -----------------------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-
Confidence 00 03467899999999999999999999999999544
Q ss_pred eeeEEEeeCCCC-----CeeEEEEccCCCEEEEEeCCCeEEEEECCCCc-------eEEEE----eccCccccccCcccC
Q psy4869 395 CENIGVMSGHTG-----AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ-------RIKKM----KGHSTFVNSCDPVRR 458 (2435)
Q Consensus 395 ~~~~~~l~~h~~-----~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~-------~v~~l----~~h~~~v~sv~~~~~ 458 (2435)
.+..+. |.. .|.+++|+|||++|++|+.||+|++||+.+++ .+..+ .+|...|.+++|+|+
T Consensus 117 --~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd 193 (588)
T 2j04_A 117 --MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED 193 (588)
T ss_dssp --EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred --eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence 444455 665 59999999999999999999999999999885 36776 667789999999998
Q ss_pred CCeEEEEEeCCCeEEEEeCCCCcce---Eee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCC
Q psy4869 459 GQLLIASGSDDCTVKVWDPRKKNQA---VSM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vwD~~~~~~~---~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+ +++++.|+.|++||+..+... ..+ .|...|.+++|+ |++||+++ ++.|++||+.+++......+|.+.
T Consensus 194 g---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 194 V---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp E---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred c---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 7 778899999999999887742 333 466789999999 68999887 699999999998875444489999
Q ss_pred EEEEEE--cCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 534 VTGLSL--SPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 534 V~~i~~--spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
|..+.| +||+..|++++.||+ ++|... .+.++||+..+++. |+++++|+..
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~~d------------------------~~~~spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLLED------------------------ELHVTADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEESS------------------------SEEEECCCSSHHHH--HHHHHHTTTT
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------------cEEECCCceEEEEc--CCEEEEEECC
Confidence 999999 999999999999999 999975 14588999877775 9999999975
Q ss_pred CCcEEEEecCCCCCeeEEEEcCCCCEEEEEE
Q psy4869 612 TRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 612 s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs 642 (2435)
.+. +..+.+ ...|.+++|+|||+.+|+++
T Consensus 321 g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 321 WNE-FNNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp TTS-SSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred CCc-eeeecc-ceEEEEEEECCCCCEEEEEE
Confidence 444 334434 77799999999999999987
No 135
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=2.2e-28 Score=308.71 Aligned_cols=310 Identities=17% Similarity=0.228 Sum_probs=229.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCC----eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEE
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAE----CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVK 186 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~ 186 (2435)
..+.||++.|++++|+|+|++||+|+.||.|+|||+... +....+.+|.+.|.+++|+|..++.+|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 457899999999999999999999999999999999875 4677789999999999998753467899999999999
Q ss_pred EEeccCC---------ccccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeec
Q psy4869 187 IWDADTG---------DCFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLL 255 (2435)
Q Consensus 187 iWd~~tg---------~~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 255 (2435)
+||++++ +.+..+.+|.+.|.+++|+|+ +.+|++++.|+.|++||++.++.+.....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------------ 152 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL------------ 152 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE------------
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc------------
Confidence 9999988 457778899999999999999 99999999999999999987543211000
Q ss_pred ccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccc
Q psy4869 256 SEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKN 335 (2435)
Q Consensus 256 ~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~ 335 (2435)
... .
T Consensus 153 ------------~~~------------------------~---------------------------------------- 156 (351)
T 3f3f_A 153 ------------TSE------------------------M---------------------------------------- 156 (351)
T ss_dssp ------------EEE------------------------E----------------------------------------
T ss_pred ------------ccc------------------------c----------------------------------------
Confidence 000 0
Q ss_pred eeeeeecccccCccccccceeEecccCCcEEEEEECCC---CCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEE
Q psy4869 336 YKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPD---GQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDL 411 (2435)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspd---g~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l 411 (2435)
. .......+|...|.+++|+|+ +.+|++++.|+.+.+|+..... .....+.+|...|.++
T Consensus 157 ---~-------------~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 157 ---K-------------VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp ---E-------------SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEE
T ss_pred ---c-------------ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEE
Confidence 0 000012367888999999997 9999999999999888766543 3466778899999999
Q ss_pred EEccCC----CEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec
Q psy4869 412 KFSTDG----CHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487 (2435)
Q Consensus 412 ~~s~dg----~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~ 487 (2435)
+|+|++ ++|++++.||.|++||++++........+..........+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 271 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSAD----------------------------- 271 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------------------
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcc-----------------------------
Confidence 999998 79999999999999999766443322221111111100000
Q ss_pred CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 488 NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 488 ~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
..+ .+.....+.....+.+|+....+.+..+.+|.+.|++++|+|++++|++++.||.|++||+..
T Consensus 272 -------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 272 -------VDM--DAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp ----------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred -------ccc--ccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCc
Confidence 000 011112333455667777778888999999999999999999999999999999999999984
No 136
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=2.1e-27 Score=310.54 Aligned_cols=299 Identities=21% Similarity=0.296 Sum_probs=244.6
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~--~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
-..++|+||++ ++||+|. |+.|+|||..+++....+. +|...|++|+|+|+|++|++|+.||.|++||+++++.+.
T Consensus 106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~ 183 (420)
T 4gga_A 106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183 (420)
T ss_dssp TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE
Confidence 34567999975 5888887 9999999999998877665 677889999999999999999999999999999999999
Q ss_pred EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy4869 1119 SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKV 1198 (2435)
Q Consensus 1119 ~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~i 1198 (2435)
.+.+|...+.++.++ +..|++++.|+.+++||........ ..+.+|...+..+.+++++.++++++.|+.|++
T Consensus 184 ~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~-----~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i 256 (420)
T 4gga_A 184 NMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHV-----ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256 (420)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEE-----EEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceee-----EEecccccceeeeeecCCCCeeeeeeccccceE
Confidence 999999999998875 6899999999999999988754432 234589999999999999999999999999999
Q ss_pred EEccCCc----eeeEeeccCCCEEEEEEeeCC-CEEEEEE--CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEEC
Q psy4869 1199 WGLDYGD----CHKSLLAHEDSVTGVTFVPKT-HYFFTTS--KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGG 1271 (2435)
Q Consensus 1199 wd~~t~~----~~~~~~~h~~~V~~i~~spd~-~~lvsgs--~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~ 1271 (2435)
||...++ .+.....|...|.+++|+|++ ..+++++ .|+.|++||+++.+.+..+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~------------------ 318 (420)
T 4gga_A 257 WPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD------------------ 318 (420)
T ss_dssp EESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE------------------
T ss_pred EeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec------------------
Confidence 9998775 345677899999999999954 5555543 68999999988765543321
Q ss_pred CCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee--cCCeEEEEEcccceEE
Q psy4869 1272 DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--LDTTVKIFFLDTFKFF 1349 (2435)
Q Consensus 1272 d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs--~dG~V~v~d~~~~k~i 1349 (2435)
....+.++.|+|+++.+++++ .||.|+|||+.+++++
T Consensus 319 -----------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v 357 (420)
T 4gga_A 319 -----------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357 (420)
T ss_dssp -----------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred -----------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE
Confidence 134577889999999998865 7899999999999999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEe
Q psy4869 1350 ISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1407 (2435)
Q Consensus 1350 ~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~ 1407 (2435)
..+.+|.+.|.+++|+|||++|++|+.|+.|+|||+.+....+....|...+....|.
T Consensus 358 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~~ 415 (420)
T 4gga_A 358 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAKSSLI 415 (420)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC----------------
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccccC
Confidence 9999999999999999999999999999999999998877766666665555444443
No 137
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=1.7e-28 Score=309.74 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=227.7
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~ 430 (2435)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.... .....+.+|...|.+++|++ |+++|++++.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4678999999999999999999999999999999997542 34566789999999999999 699999999999999
Q ss_pred EEECCCC---------ceEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceEee--------------
Q psy4869 431 VWDLEKG---------QRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAVSM-------------- 486 (2435)
Q Consensus 431 vwd~~tg---------~~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~~~-------------- 486 (2435)
+||++++ +.+..+.+|...|.++.|.|+. ..++++++.|+.|++||++.++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 5688889999999999999983 367889999999999999877654332
Q ss_pred cCcccEEEEEECCC---CCEEEEEecCCeEEEEECCCCcE--EEEEecCCCCEEEEEEcCCC----CEEEEEECCCcEEE
Q psy4869 487 NNTYQVTSVAFNDT---AECVLTGGIDNDIKMWDLRTNSV--VQKLRGHSDTVTGLSLSPDG----SYILSNAMDNTVRI 557 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~---g~~l~sgs~dg~V~lwD~~s~~~--v~~l~~h~~~V~~i~~spdg----~~las~s~Dg~I~l 557 (2435)
.+...+.+++|+|+ +.++++++.++.+.+|+...++. +..+.+|...|++++|+|++ ++|++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 35668999999997 99999999999999999888775 67788999999999999998 89999999999999
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe----cCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcC
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG----SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP 633 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg----s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp 633 (2435)
||++... .......+. .......+++...+++.+ .....+.+|+....+++..+.+|...|++++|+|
T Consensus 245 wd~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 316 (351)
T 3f3f_A 245 FKITEKL----SPLASEESL----TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNL 316 (351)
T ss_dssp EEEEECC-----------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECS
T ss_pred EeCCCCc----CccccCCcc----cceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcC
Confidence 9998531 111111111 122233334444444443 3455677777778889999999999999999999
Q ss_pred CCCEEEEEECCCcEEEecCC
Q psy4869 634 KEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 634 d~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++++|++|+.||.|++|++.
T Consensus 317 ~~~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 317 TGTILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp SSCCEEEEETTSCEEEEEEC
T ss_pred CCCEEEEecCCCcEEEEecC
Confidence 99999999999999999997
No 138
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=7e-28 Score=307.34 Aligned_cols=296 Identities=19% Similarity=0.239 Sum_probs=249.7
Q ss_pred ccceeEecccCCcEEEEEECCC---CCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 352 FAPIMLLEGHGGEIFCSKYHPD---GQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 352 ~~p~~~l~gH~~~V~~l~fspd---g~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
..+...+.+|.+.|++++|+|+ |++|++|+.||.|++||+.. .......+.+|.+.|.+++|+|++++|++++.||
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3456678999999999999999 69999999999999999986 4444477889999999999999999999999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccCc--ccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDP--VRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~--~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~ 505 (2435)
.|++||+++++.+. +.+|...|.++.| .+++ .+|++++.|+.|++||+++++.+..+.....+.++.+.+ ..++
T Consensus 109 ~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 184 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY--PMAV 184 (368)
T ss_dssp EEEEEETTTTEEEE-EEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--TEEE
T ss_pred cEEEEEcCCCCcee-eccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--CeeE
Confidence 99999999888765 5679999999999 5655 678899999999999999999988888777777777764 5889
Q ss_pred EEecCCeEEEEECCCCcEEEEE--ecCCCCEEEEEEcCCCCE----EEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc
Q psy4869 506 TGGIDNDIKMWDLRTNSVVQKL--RGHSDTVTGLSLSPDGSY----ILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN 579 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v~~l--~~h~~~V~~i~~spdg~~----las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~ 579 (2435)
+++.++.+++||++........ ..+...+.++.+.+++.. +++++.|+.|++||++.... ...+..+.+|...
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSN 263 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC
T ss_pred EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCc-cccceeeeeeecc
Confidence 9999999999999987554333 234556777777766554 99999999999999985311 1455666666531
Q ss_pred c--------ccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 580 F--------EKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 580 ~--------~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
. ...+.+++|+|++++|++|+.||.|++||+++++++..+.+|...|++++|+|++++|++|+.|+..+.|+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 1 11589999999999999999999999999999999999999999999999999999999999999766666
Q ss_pred C
Q psy4869 652 S 652 (2435)
Q Consensus 652 ~ 652 (2435)
+
T Consensus 344 ~ 344 (368)
T 3mmy_A 344 F 344 (368)
T ss_dssp G
T ss_pred c
Confidence 4
No 139
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.4e-28 Score=318.55 Aligned_cols=292 Identities=25% Similarity=0.415 Sum_probs=239.6
Q ss_pred CCCccceEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCee
Q psy4869 72 PGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECG 151 (2435)
Q Consensus 72 ~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~ 151 (2435)
.++...|.++++ ++.++++|+.||.|++||+.+++.+..+.+|.+.|.+++| ++++|++|+.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 345566777776 7899999999999999999999999999999999999999 689999999999999999999999
Q ss_pred EEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccc---cccccccceEEEEEEEeCCCeEEEeeCCCcEE
Q psy4869 152 LHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCF---KTMAAHLTEVWGVCVMREDSYLISGSNDAELK 228 (2435)
Q Consensus 152 ~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~---~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~ 228 (2435)
+..+.+|.+.|.+++|+ +.+|++++.||.|++||+++++.+ ..+.+|...|.+++| +++++++|+.||.|+
T Consensus 206 ~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp EEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred EEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 99999999999999995 247999999999999999998876 677899999999998 788999999999999
Q ss_pred EEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccc
Q psy4869 229 VWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFG 308 (2435)
Q Consensus 229 vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (2435)
+||+++++.
T Consensus 280 vwd~~~~~~----------------------------------------------------------------------- 288 (435)
T 1p22_A 280 VWNTSTCEF----------------------------------------------------------------------- 288 (435)
T ss_dssp EEETTTCCE-----------------------------------------------------------------------
T ss_pred EEECCcCcE-----------------------------------------------------------------------
Confidence 999874310
Q ss_pred cchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEE
Q psy4869 309 IDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFI 388 (2435)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~i 388 (2435)
...+.+|...|.++.| ++++|++|+.||.|++
T Consensus 289 ----------------------------------------------~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 289 ----------------------------------------------VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 320 (435)
T ss_dssp ----------------------------------------------EEEEECCSSCEEEEEE--ETTEEEEEETTSCEEE
T ss_pred ----------------------------------------------EEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 1124578888999999 5789999999999999
Q ss_pred EecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc---------eEEEEeccCccccccCcccCC
Q psy4869 389 WSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ---------RIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 389 wd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~---------~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
||+... ..+..+.+|...|.+++| ++.+|++++.||.|++||+.+++ .+..+.+|...|.++.| +
T Consensus 321 wd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~- 394 (435)
T 1p22_A 321 WDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D- 394 (435)
T ss_dssp EETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C-
T ss_pred EECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C-
Confidence 999865 356678899999999999 78899999999999999998766 88999999999999998 3
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEEC
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFN 498 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~s 498 (2435)
+..+++++.||.|++||+.............+..++.|.
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYI 433 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------------------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccceeee
Confidence 356889999999999999877665555555555555554
No 140
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=7.2e-29 Score=311.21 Aligned_cols=252 Identities=24% Similarity=0.374 Sum_probs=207.9
Q ss_pred eEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCce-eeEEEeeCCCCCeeEEEEcc--CCCEEEEEeCCCeEEEE
Q psy4869 356 MLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC-ENIGVMSGHTGAVMDLKFST--DGCHIFTCSTDQTLAVW 432 (2435)
Q Consensus 356 ~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~-~~~~~l~~h~~~V~~l~~s~--dg~~L~s~s~Dg~I~vw 432 (2435)
.++.+|.+.|++++|+|+|++||+|+.|+.|+|||+..+. ..+..+.+|.+.|.+++|++ ++++|++++.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 3567999999999999999999999999999999997653 34667899999999999986 48899999999999999
Q ss_pred ECCCC--ceEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcce---Ee-ecCcccEEEEEECCC-----
Q psy4869 433 DLEKG--QRIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQA---VS-MNNTYQVTSVAFNDT----- 500 (2435)
Q Consensus 433 d~~tg--~~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~---~~-~~~~~~v~sv~~sp~----- 500 (2435)
|++++ +.+..+.+|...|.+++|+|+. ..+|++|+.|+.|++||++.+... .. ..|...+.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99987 4667788999999999999974 468999999999999999876422 11 246778999999997
Q ss_pred ------------CCEEEEEecCCeEEEEECCCC---cEEEEEecCCCCEEEEEEcCCC----CEEEEEECCCcEEEEEcC
Q psy4869 501 ------------AECVLTGGIDNDIKMWDLRTN---SVVQKLRGHSDTVTGLSLSPDG----SYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 501 ------------g~~l~sgs~dg~V~lwD~~s~---~~v~~l~~h~~~V~~i~~spdg----~~las~s~Dg~I~lWdl~ 561 (2435)
+++|++|+.|+.|++||++.. +++..+.+|.+.|.+++|+|++ ++|++++.|++|+|||++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999865 4677889999999999999987 899999999999999997
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
...........+..| ...+.+++|+|+|++|++|+.|+.|+||+..
T Consensus 247 ~~~~~~~~~~~~~~~----~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 247 DASSNTWSPKLLHKF----NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp STTCCCCBCCEEEEC----SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred CccccchhhhhhhcC----CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 522111112223333 3578999999999999999999999999975
No 141
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=297.64 Aligned_cols=275 Identities=20% Similarity=0.366 Sum_probs=231.6
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.++|+|++++ +||+| .|++|+|||+.++.. ....+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999876 77766 599999999976532 33345678899999999999999999999999999999999999999
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCC
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTN 521 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~ 521 (2435)
.+|...+.++.+. +.++++++.++.+++|+......... ..+...+.++.+++++++|++++.||.|++||++++
T Consensus 106 ~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 106 TSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp ECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred cCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 9999888766543 35789999999999999887654433 367888999999999999999999999999999986
Q ss_pred cE----EEEEecCCCCEEEEEEcCCCCEE---EEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 522 SV----VQKLRGHSDTVTGLSLSPDGSYI---LSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 522 ~~----v~~l~~h~~~V~~i~~spdg~~l---as~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+. ......|.+.|.++.++|++..+ ++++.|++|++||.+. .........+ ..+..+.|+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~----~~~~~~~~~~-----~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS----GACLSAVDAH-----SQVCSILWSPHYK 253 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTT----CCEEEEEECS-----SCEEEEEEETTTT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccc----ccccccccce-----eeeeeeeeccccc
Confidence 53 45567788999999999976543 3566899999999874 3333333322 3678999999999
Q ss_pred EEEEec--CCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 595 YVTAGS--ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 595 ~Lasgs--~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.+++++ .|+.|+|||+++++++..+.+|.+.|++|+|+|++++|++|+.||+|++||+.
T Consensus 254 ~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred ceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 887654 79999999999999999999999999999999999999999999999999985
No 142
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=9.3e-28 Score=303.65 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=246.3
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---eeEEEeccCCCEEEEEEccCCC-EEEEEeCCCcEEEEe
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLAHEDSVTGVTFVPKTH-YFFTTSKDGRVKQWD 1152 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~~~~l~~h~~~V~~v~fsp~~~-~l~s~s~Dg~V~iwD 1152 (2435)
...+|...|.+++|+|++++|++++.||.|++|++..++ ....+..|...|.+++|+|+++ +|++++.|+.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 345799999999999999999999999999999998887 3455668999999999999999 999999999999999
Q ss_pred C-CCcceeEEEEEEEeecc--cccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---------CceeeEeeccCCCEEEE
Q psy4869 1153 A-DNFERIVTLHFFISLYG--HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---------GDCHKSLLAHEDSVTGV 1220 (2435)
Q Consensus 1153 ~-~~~~~~~~~~~~~~~~~--h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---------~~~~~~~~~h~~~V~~i 1220 (2435)
+ ..... . .+.. |...|.+++|++ +.+|++++.|+.|++||+++ ++.+..+. |...|.++
T Consensus 86 ~~~~~~~-~------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 86 LIGSPSF-Q------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp SSSSSSE-E------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred eccCCce-E------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 9 77643 2 2357 999999999999 99999999999999999998 77777665 89999999
Q ss_pred EEeeCCCEEEEEECCCcEEEEECCC-CceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTSKDGRVKQWDADN-FERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299 (2435)
Q Consensus 1221 ~~spd~~~lvsgs~Dg~I~vwD~~~-~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~ 1299 (2435)
+|+|++ +++++.|+.|++||++. .......
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~----------------------------------------------- 187 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI----------------------------------------------- 187 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEE-----------------------------------------------
T ss_pred EecCCc--EEEEeCCCeEEEEECCcccccccee-----------------------------------------------
Confidence 999876 99999999999999876 4321000
Q ss_pred cceeeeeecccccccccEEEEEecC-CcceeEEeecCCeEEEEEcccc------eEEEEecCCCC---------CeEEEE
Q psy4869 1300 HKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTTVKIFFLDTF------KFFISLYGHKL---------PVLSLD 1363 (2435)
Q Consensus 1300 ~~~~~~~~~~~~~~~~~i~~ia~sp-dg~~lavgs~dG~V~v~d~~~~------k~i~~~~~h~~---------~V~~la 1363 (2435)
....+...+.+++|+| ++++|++++.+|.+++|+++.. +....+..|.. .|.+++
T Consensus 188 ---------~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 258 (342)
T 1yfq_A 188 ---------EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIE 258 (342)
T ss_dssp ---------EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEE
T ss_pred ---------eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEE
Confidence 0112346789999999 9999999999999999999886 77888888865 999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc-ccceEEEEEeeCCCEEEEEeCCCc-EEEEEC
Q psy4869 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFVPKTHYFFTTSKDGR-VKQWDA 1427 (2435)
Q Consensus 1364 ~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h-~~~V~~laf~P~~~~laSgg~Dg~-V~lWd~ 1427 (2435)
|+|++++|++|+.||.|++||+.+++++..+.+| ..+|++++ |++.+|++++.||. .+.|..
T Consensus 259 ~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 259 FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred EcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence 9999999999999999999999999999999998 99999999 99999999999998 666664
No 143
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=3e-27 Score=302.72 Aligned_cols=309 Identities=14% Similarity=0.153 Sum_probs=235.4
Q ss_pred EEEeCCCeEEEEEEecCCCEEEEEeCC-------CeEEEEEccCCce----------eecccccccceeEEEEecCCCCC
Q psy4869 920 RTIDTGSYALSVCFVPGDRHVLVGTKD-------GRLLIVDIGAGEI----------LEDIPAHSQELWSVAMLPDQFNP 982 (2435)
Q Consensus 920 ~~l~~~~~v~~vafspdg~~Lavg~~d-------g~V~vwd~~sg~~----------v~~~~~h~~~V~sv~~s~d~~~~ 982 (2435)
..++.+.++.+++|+||+++|+.|+.+ ++|.+|++..+.. ...+..|.+.|.++++.++.. .
T Consensus 9 ~~~~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~-~ 87 (365)
T 4h5i_A 9 ASYNVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGII-L 87 (365)
T ss_dssp EEEECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEE-E
T ss_pred eecCCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEE-E
Confidence 566778899999999999999998643 3699999976542 123567888888988876520 0
Q ss_pred CCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE--C
Q psy4869 983 NVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--L 1060 (2435)
Q Consensus 983 ~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~--~ 1060 (2435)
...+..+..|++++.|+.+++|+++...... .... .............+.+++|||||++|++++ .
T Consensus 88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQL-------EFLT-----SVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp EECCCCHHHHHHTSCCCCEEEEEEETTTTEE-------EEEE-----EECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EEECCCccEEEEecCCCcEEEEEecCCCceE-------EEee-----eeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 0000111223344568889999875322100 0000 000011122345689999999999988765 5
Q ss_pred CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE--EeccCCCEEEEEEccCCCE
Q psy4869 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTHY 1138 (2435)
Q Consensus 1061 dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp~~~~ 1138 (2435)
|+.|+|||+.+++.+..+. |...|.+++|+|||++|++++.+ .+++|+..+++.+.. ...|...|.+++|+|++..
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~ 233 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV 233 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE
Confidence 7999999999999988886 77889999999999999998854 577777777776544 3468889999999999999
Q ss_pred EEEEeCCC----cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEe-ecc
Q psy4869 1139 FFTTSKDG----RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-LAH 1213 (2435)
Q Consensus 1139 l~s~s~Dg----~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~-~~h 1213 (2435)
+++++.|+ .+++|++........ ....+..|..+|++++|+|+|++||+|+.|+.|+|||+++++++..+ .+|
T Consensus 234 l~~~s~d~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 234 LIAASLKKGKGIVLTKISIKSGNTSVL--RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EEEEEESSSCCEEEEEEEEETTEEEEE--EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred EEEEecCCcceeEEeecccccceecce--eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 99999887 588888876543222 22345688999999999999999999999999999999999998875 689
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCcEEEEECCC
Q psy4869 1214 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1245 (2435)
Q Consensus 1214 ~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~ 1245 (2435)
...|++|+|+||+++|++++.|++|+|||+..
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 99999999999999999999999999999864
No 144
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=318.78 Aligned_cols=330 Identities=14% Similarity=0.244 Sum_probs=247.6
Q ss_pred CccceEEEeecCCCCeEEEEEcCCeEEEEECCCCC-----------eEEEecCCC------------CCEEEEEEcCCC-
Q psy4869 74 EKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLDTTD-----------VISTFTGHK------------SAITVIQYDPLG- 129 (2435)
Q Consensus 74 ~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~-----------~~~~l~gH~------------~~V~~l~f~p~g- 129 (2435)
+...|.+++|+|+|.+||+|+.||.|++||+.+++ .+..+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 45678999999999999999999999999999887 588999998 889999999998
Q ss_pred -CEEEEEeCCCCEEEEEccCCeeE---------------------------------------EE-EecCCCcEEEEEEe
Q psy4869 130 -HRLATGSKDTDIVLWDVVAECGL---------------------------------------HR-LSGHKGVITDIRFM 168 (2435)
Q Consensus 130 -~~laSgs~Dg~I~iWd~~~~~~~---------------------------------------~~-l~gH~~~V~~v~~~ 168 (2435)
.+|++|+.|+.|+|||+...... .. +.+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 89999999999999998764331 13 36899999999998
Q ss_pred ecCCCcEEEEEeCCCcEEEEeccC-Ccccc-------ccccccceEEEEEEEeCC-CeEEEeeCCCcEEEEEcCCCCCcc
Q psy4869 169 SQPGHHFVVSSAKDTFVKIWDADT-GDCFK-------TMAAHLTEVWGVCVMRED-SYLISGSNDAELKVWNVRDRSDID 239 (2435)
Q Consensus 169 ~~~~~~~l~S~s~Dg~I~iWd~~t-g~~~~-------~~~~h~~~V~~l~~~p~~-~~l~s~s~Dg~v~vwdl~~~~~~~ 239 (2435)
| ++.+|++| .|+.|++||+++ ++++. .+.+|...|.+++|+|++ .+|++|+.||+|++||++.++...
T Consensus 187 ~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 187 S--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp T--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred C--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 6 46688888 899999999994 44444 467899999999999998 899999999999999998653210
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
.. ..
T Consensus 264 ~~--------~~-------------------------------------------------------------------- 267 (447)
T 3dw8_B 264 RH--------SK-------------------------------------------------------------------- 267 (447)
T ss_dssp TT--------CE--------------------------------------------------------------------
T ss_pred ce--------ee--------------------------------------------------------------------
Confidence 00 00
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEE
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIG 399 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~ 399 (2435)
.+..... ......+.+|...|.+++|+|+|++|++++. |.|++||+......+.
T Consensus 268 ---------~~~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 268 ---------LFEEPED----------------PSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp ---------EECCC---------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred ---------EeccCCC----------------ccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 0000000 0001134578889999999999999999999 9999999986445566
Q ss_pred EeeCCCCC---------------eeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEE
Q psy4869 400 VMSGHTGA---------------VMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIA 464 (2435)
Q Consensus 400 ~l~~h~~~---------------V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~lla 464 (2435)
.+.+|... +..++|+|++++|++++.||.|++||+.+++.+ .+.+|..........+.. .+.
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPR--KVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCC--CEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCc--ccc
Confidence 67777542 334999999999999999999999999998875 666666544433332222 222
Q ss_pred EEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 465 SGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.++... ........+.....|..++|+|++++||+++.++ +++|.-+
T Consensus 399 ~~~~~~-------~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 399 ASGKRK-------KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CSSCCC-------TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCcc-------cccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 222110 0111111234566789999999999999998775 7788654
No 145
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.6e-27 Score=313.20 Aligned_cols=274 Identities=28% Similarity=0.466 Sum_probs=243.4
Q ss_pred EecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
...+|...|+|+.| ++++|++|+.||.|++||+... .....+.+|.+.|.+++| ++++|++|+.||.|++||+++
T Consensus 128 ~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp CCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred cccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence 34567888999887 7999999999999999998764 345678899999999999 788999999999999999999
Q ss_pred CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceE---e-ecCcccEEEEEECCCCCEEEEEecCCe
Q psy4869 437 GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAV---S-MNNTYQVTSVAFNDTAECVLTGGIDND 512 (2435)
Q Consensus 437 g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~---~-~~~~~~v~sv~~sp~g~~l~sgs~dg~ 512 (2435)
++.+..+.+|...|.++.|.+ ..+++|+.|+.|++||++.+.... . ..+...|.+++| +++++++|+.||.
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 999999999999999999864 488999999999999999877652 2 257788999999 7899999999999
Q ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 513 IKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 513 V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
|++||+++++.+..+.+|...|.++.| ++++|++|+.||.|++||++ ..+++..+.+|. ..+.++.| +
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~----~~~~~~~~~~h~----~~v~~~~~--~ 345 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIE----CGACLRVLEGHE----ELVRCIRF--D 345 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETT----TCCEEEEECCCS----SCEEEEEC--C
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC----CCCEEEEEeCCc----CcEEEEEe--c
Confidence 999999999999999999999999999 57899999999999999998 467888888775 36788888 7
Q ss_pred CCEEEEecCCCeEEEEECCCCc---------EEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCCC
Q psy4869 593 GLYVTAGSADKCVYIWDTTTRR---------IAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESPL 654 (2435)
Q Consensus 593 g~~Lasgs~Dg~V~iwd~~s~~---------~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~~ 654 (2435)
+++|++|+.||.|++||+++++ .+..+.+|.+.|.+++| ++.+|++|+.||.|++||+..
T Consensus 346 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 346 NKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp SSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred CCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
Confidence 8999999999999999998766 88999999999999999 678899999999999999974
No 146
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=305.47 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=247.9
Q ss_pred EcCCCeEEEEEecCCcCEEEEEEcCC---CCEEEEEECCCcEEEEEccC-Ccee-EEEeccCCCEEEEEEccCCCEEEEE
Q psy4869 1068 FLDTFKFFISLYGHKLPVLSLDMSYD---STLIATGSGDRTVKVWGLDY-GDCH-KSLLAHEDSVTGVTFVPKTHYFFTT 1142 (2435)
Q Consensus 1068 d~~~~~~~~~l~~h~~~V~sl~~spd---g~~L~Sgs~Dg~I~vWd~~t-~~~~-~~l~~h~~~V~~v~fsp~~~~l~s~ 1142 (2435)
+....+.+..+.+|...|.+++|+|+ +++|++|+.||.|++||+++ +..+ ..+.+|...|.+++|+|++++|+++
T Consensus 25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 44566777788899999999999999 59999999999999999987 5555 7788899999999999999999999
Q ss_pred eCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEE--eCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEE
Q psy4869 1143 SKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDM--SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGV 1220 (2435)
Q Consensus 1143 s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i 1220 (2435)
+.|+.|++||+.+...... ..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..|. .+.++
T Consensus 105 ~~dg~v~iwd~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQI-------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp ETTSEEEEEETTTTEEEEE-------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEE
T ss_pred cCCCcEEEEEcCCCCceee-------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEE
Confidence 9999999999998765442 368999999999 8899999999999999999999999888887654 56666
Q ss_pred EEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1300 (2435)
Q Consensus 1221 ~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~ 1300 (2435)
.+. ...+++++.|+.+.+||++.........
T Consensus 177 ~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------------------------- 207 (368)
T 3mmy_A 177 DVI--YPMAVVATAERGLIVYQLENQPSEFRRI----------------------------------------------- 207 (368)
T ss_dssp EEE--TTEEEEEEGGGCEEEEECSSSCEEEEEC-----------------------------------------------
T ss_pred Eec--CCeeEEEeCCCcEEEEEeccccchhhhc-----------------------------------------------
Confidence 665 4578888899999999887643322110
Q ss_pred ceeeeeecccccccccEEEEEecCCcce----eEEeecCCeEEEEEcccc---eEEEEecCCCC------------CeEE
Q psy4869 1301 KVLSLLHTRTLKLEEQVLCARVSPDSKL----LAVSLLDTTVKIFFLDTF---KFFISLYGHKL------------PVLS 1361 (2435)
Q Consensus 1301 ~~~~~~~~~~~~~~~~i~~ia~spdg~~----lavgs~dG~V~v~d~~~~---k~i~~~~~h~~------------~V~~ 1361 (2435)
.........++++.++... +++++.||.|++|++... +.+..+.+|.. +|.+
T Consensus 208 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 278 (368)
T 3mmy_A 208 ---------ESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNG 278 (368)
T ss_dssp ---------CCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEE
T ss_pred ---------cccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEE
Confidence 0112334555555555444 999999999999999886 56777788876 7999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1362 LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1362 la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++|+|++++|++|+.||.|++||+.+++++..+.+|..+|++++|+|++.+|++++.|+..+.|++..
T Consensus 279 ~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 279 IAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999998666666544
No 147
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2e-27 Score=304.70 Aligned_cols=258 Identities=17% Similarity=0.289 Sum_probs=222.5
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECC--CCCeEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLD--TTDVISTFTGHKSAITVIQYDPL--GHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~--~~~~~~~l~gH~~~V~~l~f~p~--g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|++++.+||+++.||.|++||+. +.+.+..+.+|.+.|++++|+++ +++|++|+.||.|+|||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd 85 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE
Confidence 456888999999999999999999999999999998 66788899999999999999987 89999999999999999
Q ss_pred ccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc--ccccccccceEEEEEEEe--------
Q psy4869 146 VVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC--FKTMAAHLTEVWGVCVMR-------- 213 (2435)
Q Consensus 146 ~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~--~~~~~~h~~~V~~l~~~p-------- 213 (2435)
+.+.+ .+..+.+|...|.+++|+|+..+.+|++++.|+.|++||++++.. ...+..|...|.+++|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 86 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred cCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 99887 678889999999999998764367899999999999999998854 345678999999999999
Q ss_pred -----CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 214 -----EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 214 -----~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
++.+|++++.|+.|++||++.....
T Consensus 166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------------------------------- 195 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------------------- 195 (379)
T ss_dssp ----CTTCEEEEEETTSCEEEEEEETTTTE--------------------------------------------------
T ss_pred ccCCCCCCEEEEEeCCCeEEEEEecCCCcc--------------------------------------------------
Confidence 6899999999999999998743100
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
......+.+|...|.++
T Consensus 196 ---------------------------------------------------------------~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 196 ---------------------------------------------------------------YVLESTLEGHSDWVRDV 212 (379)
T ss_dssp ---------------------------------------------------------------EEEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------------------------eeeEEEEecccCcEeEE
Confidence 00112456899999999
Q ss_pred EECCC---CCEEEEEeCCCeEEEEecCCc----eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 369 KYHPD---GQYIASSGYDRQIFIWSVYGE----CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 369 ~fspd---g~~Lasgs~Dg~I~iwd~~~~----~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
+|+|+ +.+|++++.||.|++||+... .........|...|.+++|+|++++|++++.||.|++||+..+...
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 99999 899999999999999999864 2223333458999999999999999999999999999999865433
No 148
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-26 Score=295.36 Aligned_cols=257 Identities=26% Similarity=0.415 Sum_probs=218.4
Q ss_pred eeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccC--CCEEEEEeCCCeEEE
Q psy4869 355 IMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTD--GCHIFTCSTDQTLAV 431 (2435)
Q Consensus 355 ~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~d--g~~L~s~s~Dg~I~v 431 (2435)
..++.+|.+.|++++|+|+|++|++|+.||.|++||+.. .......+.+|.+.|.+++|+++ +++|++++.||.|++
T Consensus 4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 356889999999999999999999999999999999974 33455678899999999999976 899999999999999
Q ss_pred EECCCCc--eEEEEeccCccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCcceE---eecCcccEEEEEECC------
Q psy4869 432 WDLEKGQ--RIKKMKGHSTFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKNQAV---SMNNTYQVTSVAFND------ 499 (2435)
Q Consensus 432 wd~~tg~--~v~~l~~h~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~~~~---~~~~~~~v~sv~~sp------ 499 (2435)
||+.+++ .+..+.+|...|.+++|+|+. ..++++++.|+.|++||++...... ...+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999987 778888999999999999983 4678899999999999998774322 236788999999999
Q ss_pred -------CCCEEEEEecCCeEEEEECCCCc----EEEEEecCCCCEEEEEEcCC---CCEEEEEECCCcEEEEEcCCCCC
Q psy4869 500 -------TAECVLTGGIDNDIKMWDLRTNS----VVQKLRGHSDTVTGLSLSPD---GSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 500 -------~g~~l~sgs~dg~V~lwD~~s~~----~v~~l~~h~~~V~~i~~spd---g~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
++++|++|+.||.|++||+++++ .+..+.+|...|.+++|+|+ +++|++++.||.|++||++....
T Consensus 164 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~ 243 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 243 (379)
T ss_dssp ------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc
Confidence 69999999999999999998764 45677899999999999999 89999999999999999985321
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
......+.. ......+.+++|+|+|++|++++.||.|++||+..+.
T Consensus 244 -~~~~~~~~~--~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 244 -PWKKTLLKE--EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp -CCEEEESSS--SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred -cceeeeecc--ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 111222222 1223578999999999999999999999999987553
No 149
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=5.8e-27 Score=304.42 Aligned_cols=282 Identities=16% Similarity=0.290 Sum_probs=232.2
Q ss_pred EEEeecCCCCeEE-EEEcCCeEEEEECCCC----CeEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCCEEEEEccCC---
Q psy4869 79 CQLSPNHDSSQLA-VAYTNGSLKTFSLDTT----DVISTFTGHKSAITVIQYDP-LGHRLATGSKDTDIVLWDVVAE--- 149 (2435)
Q Consensus 79 ~~~~~~~d~~~la-v~~~~G~i~i~d~~~~----~~~~~l~gH~~~V~~l~f~p-~g~~laSgs~Dg~I~iWd~~~~--- 149 (2435)
..++++++...++ .++.+|.|++|+++.. ..+..+.+|.+.|++++|+| ++++||+|+.||.|+|||+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 3467777764443 4678999999999765 34557889999999999999 8999999999999999999887
Q ss_pred ----eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccccc--ccccceEEEEEEEeCCCeEEEeeC
Q psy4869 150 ----CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTM--AAHLTEVWGVCVMREDSYLISGSN 223 (2435)
Q Consensus 150 ----~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~--~~h~~~V~~l~~~p~~~~l~s~s~ 223 (2435)
+.+..+.+|.+.|.+++|+|+. ..+|++++.|+.|++||+++++++..+ .+|.+.|.+++|+|++++|++++.
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred cccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 5678899999999999998642 358999999999999999999999999 899999999999999999999999
Q ss_pred CCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccC
Q psy4869 224 DAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNID 303 (2435)
Q Consensus 224 Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (2435)
|+.|++||++.++.+
T Consensus 197 d~~i~iwd~~~~~~~----------------------------------------------------------------- 211 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVV----------------------------------------------------------------- 211 (402)
T ss_dssp TSEEEEEETTTTEEE-----------------------------------------------------------------
T ss_pred CCcEEEEeCCCCcee-----------------------------------------------------------------
Confidence 999999998753100
Q ss_pred ccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEe-cccCCc-EEEEEECCCCCEEEEE-
Q psy4869 304 DFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLL-EGHGGE-IFCSKYHPDGQYIASS- 380 (2435)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l-~gH~~~-V~~l~fspdg~~Lasg- 380 (2435)
..+ .+|.+. +.++.|+|+|.+|++|
T Consensus 212 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 212 ----------------------------------------------------AEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp ----------------------------------------------------EEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred ----------------------------------------------------eeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 011 245554 7889999999999999
Q ss_pred --eCCCeEEEEecCCceeeEEE-eeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCce-EEEEec--cCcccccc
Q psy4869 381 --GYDRQIFIWSVYGECENIGV-MSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQR-IKKMKG--HSTFVNSC 453 (2435)
Q Consensus 381 --s~Dg~I~iwd~~~~~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~-v~~l~~--h~~~v~sv 453 (2435)
+.|+.|++||+......... ...|...|..++|+|++++|+++ +.|+.|++||+.+++. +..+.. |...+.++
T Consensus 240 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~ 319 (402)
T 2aq5_A 240 SRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGM 319 (402)
T ss_dssp CTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEE
T ss_pred cCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccce
Confidence 79999999999865432222 23578889999999999999755 4799999999998874 555554 45889999
Q ss_pred CcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 454 DPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 454 ~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
+|+|++..+ ++.++.+++|++..+.
T Consensus 320 ~~sp~~~~~---~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 320 GYMPKRGLE---VNKCEIARFYKLHERK 344 (402)
T ss_dssp EECCGGGSC---GGGTEEEEEEEEETTE
T ss_pred EEecccccc---eecceeEEEEEcCCCc
Confidence 999987543 2467799999987654
No 150
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=6e-27 Score=304.24 Aligned_cols=280 Identities=17% Similarity=0.248 Sum_probs=237.7
Q ss_pred EEEEECCCCCE-EEEEeCCCeEEEEecCCcee---eEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCC---
Q psy4869 366 FCSKYHPDGQY-IASSGYDRQIFIWSVYGECE---NIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKG--- 437 (2435)
Q Consensus 366 ~~l~fspdg~~-Lasgs~Dg~I~iwd~~~~~~---~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg--- 437 (2435)
..++++|+... +++|+.||.|+||++..... ....+.+|.+.|.+++|+| ++++|++++.||.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 35788887654 44678999999999865322 2345678999999999999 9999999999999999999987
Q ss_pred ----ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEecC
Q psy4869 438 ----QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGID 510 (2435)
Q Consensus 438 ----~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~d 510 (2435)
+.+..+.+|...|.+++|+|++..++++++.|+.|++||+++++.+..+ .|...|.+++|+|++++|++|+.|
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 197 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence 6788999999999999999998889999999999999999999888777 378899999999999999999999
Q ss_pred CeEEEEECCCCcEEEEE-ecCCCC-EEEEEEcCCCCEEEEE---ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeE
Q psy4869 511 NDIKMWDLRTNSVVQKL-RGHSDT-VTGLSLSPDGSYILSN---AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLL 585 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l-~~h~~~-V~~i~~spdg~~las~---s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~ 585 (2435)
|.|++||+++++.+..+ .+|.+. +.++.|+|++++|++| +.|+.|++||++... ..+...... ....+.
T Consensus 198 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~---~~~~~~~~~---~~~~v~ 271 (402)
T 2aq5_A 198 KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE---EPLSLQELD---TSSGVL 271 (402)
T ss_dssp SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS---SCSEEEECC---CCSSCE
T ss_pred CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc---CCceEEecc---CCCcee
Confidence 99999999999999998 788876 8999999999999999 799999999998532 222222211 124689
Q ss_pred EEEEcCCCCEEE-EecCCCeEEEEECCCCcE-EEEecC--CCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 586 RCAWSVSGLYVT-AGSADKCVYIWDTTTRRI-AYKLPG--HNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 586 ~v~~spdg~~La-sgs~Dg~V~iwd~~s~~~-~~~l~~--h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++.
T Consensus 272 ~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 272 LPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp EEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence 999999999996 566899999999999874 444444 5699999999999998775 57799999986
No 151
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=2.7e-26 Score=297.04 Aligned_cols=361 Identities=13% Similarity=0.081 Sum_probs=214.7
Q ss_pred eeeCCCCceEEEEEeCC---CCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEE
Q psy4869 18 IIASPNCNVVFVTLKNQ---EGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY 94 (2435)
Q Consensus 18 ~~~~~~~~v~~~~~~~~---~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~ 94 (2435)
...+.+.....++...+ .+++|+.|.++.|+||+......... ..........-.+...+..+.|++.
T Consensus 10 ~~lpl~~~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 80 (393)
T 4gq1_A 10 YQLPLNVRPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGS-TGLTLQELFTIQTGLPTLHLSFSSS-------- 80 (393)
T ss_dssp EECCTTCCEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSC-CSEEEEEEEEEECSSCEEEEEECTT--------
T ss_pred eEecCCCCCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccc-cccceeeeEEEecCCCeeeEeecCC--------
Confidence 34455666666655433 45688888999999999753321110 0000000000001111222222221
Q ss_pred cCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeE-----EEEecCCCcEEEEEEee
Q psy4869 95 TNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGL-----HRLSGHKGVITDIRFMS 169 (2435)
Q Consensus 95 ~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~-----~~l~gH~~~V~~v~~~~ 169 (2435)
......+|...+....+.+++.+||+|+.|++|+|||...+... ..+.||.+.|.+|+|+|
T Consensus 81 --------------~~~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p 146 (393)
T 4gq1_A 81 --------------CSYSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIAD 146 (393)
T ss_dssp --------------CEEECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEE
T ss_pred --------------ccccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEcc
Confidence 12233456777777777888899999999999999999887643 23579999999999987
Q ss_pred c------CCCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCC-eEEEeeCCCcEEEEEcCCCCCccccc
Q psy4869 170 Q------PGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDS-YLISGSNDAELKVWNVRDRSDIDTED 242 (2435)
Q Consensus 170 ~------~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~-~l~s~s~Dg~v~vwdl~~~~~~~~~~ 242 (2435)
. .++++|+|+|.|++|+|||++++.++..+..|...|.+++|+|++. +|++++.|++|++||++.++......
T Consensus 147 ~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~ 226 (393)
T 4gq1_A 147 VYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENS 226 (393)
T ss_dssp EECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC------
T ss_pred ccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccccc
Confidence 2 2567999999999999999999998888889999999999999875 79999999999999998754211100
Q ss_pred hhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhccc
Q psy4869 243 KDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKR 322 (2435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (2435)
...
T Consensus 227 ~~~----------------------------------------------------------------------------- 229 (393)
T 4gq1_A 227 QTE----------------------------------------------------------------------------- 229 (393)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccC-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee
Q psy4869 323 KNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS 402 (2435)
Q Consensus 323 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~ 402 (2435)
..|...+....+.+.. ......
T Consensus 230 ------------------------------------~~~~~~~~s~~~~~~~----------------------~~~~~~ 251 (393)
T 4gq1_A 230 ------------------------------------LVKNPWLLTLNTLPLV----------------------NTCHSS 251 (393)
T ss_dssp -------------------------------------CSCCCSEEEESGGGC----------------------------
T ss_pred ------------------------------------CcccceEEecccccce----------------------eeeecc
Confidence 0000000000000000 001123
Q ss_pred CCCCCeeEEEEc-cCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 403 GHTGAVMDLKFS-TDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 403 ~h~~~V~~l~~s-~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
+|...|..+.|+ +|++.|++++.|+.+++||+..++....+..|...+..+.+.++.... .
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~----------------- 313 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI-S----------------- 313 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE-C-----------------
T ss_pred cccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc-c-----------------
Confidence 466667777765 577777777777778888877777777777777666666666653111 0
Q ss_pred ceEeecCcccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 482 QAVSMNNTYQVTSVAFND--TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWD 559 (2435)
Q Consensus 482 ~~~~~~~~~~v~sv~~sp--~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWd 559 (2435)
.....+ ...|+| ++.++++|+.||.|++||+.+++.+..+.+|...|.+|+|+|||++||+++.|| +.+|.
T Consensus 314 -----~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvr 386 (393)
T 4gq1_A 314 -----LFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTR 386 (393)
T ss_dssp -----SSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEE
T ss_pred -----ccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEE
Confidence 001111 223333 444677788899999999999999988889999999999999999999998766 66666
Q ss_pred cC
Q psy4869 560 IR 561 (2435)
Q Consensus 560 l~ 561 (2435)
+.
T Consensus 387 L~ 388 (393)
T 4gq1_A 387 LM 388 (393)
T ss_dssp EG
T ss_pred Ee
Confidence 54
No 152
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=9.6e-26 Score=295.73 Aligned_cols=248 Identities=23% Similarity=0.399 Sum_probs=219.4
Q ss_pred EEeeCCCCCeeEEEEccC-CCEEEEEeCCCeEEEEECCC----------CceEEEEeccCccccccCcccCCCeEEEEEe
Q psy4869 399 GVMSGHTGAVMDLKFSTD-GCHIFTCSTDQTLAVWDLEK----------GQRIKKMKGHSTFVNSCDPVRRGQLLIASGS 467 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~vwd~~t----------g~~v~~l~~h~~~v~sv~~~~~~~~llasgs 467 (2435)
.....|.+.|++++|+|+ +.+|++++.||.|++||+.+ .+.+..+.+|...+.+++|++.+..+|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 445679999999999997 67899999999999999987 6788889999999999999999887899999
Q ss_pred CCCeEEEEeCCCCcc-------eEee-cCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCC---cEEEEEecCCCCEE
Q psy4869 468 DDCTVKVWDPRKKNQ-------AVSM-NNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTN---SVVQKLRGHSDTVT 535 (2435)
Q Consensus 468 ~Dg~I~vwD~~~~~~-------~~~~-~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~---~~v~~l~~h~~~V~ 535 (2435)
.||.|++||+..+.. ...+ .|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987322 2222 5778899999999 7889999999999999999987 57788889999999
Q ss_pred EEEEcCCCC-EEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCC-
Q psy4869 536 GLSLSPDGS-YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTT- 612 (2435)
Q Consensus 536 ~i~~spdg~-~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s- 612 (2435)
+|+|+|++. +|++|+.||.|++||++.. ..++..+.+|. ..+.++.|+|+++ +|++++.|+.|+|||+..
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~---~~~~~~~~~h~----~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNL---KLKLHSFESHK----DEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCT---TSCSEEEECCS----SCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCC---CCCeEEeecCC----CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 999999987 6889999999999999852 35667777764 4789999999995 699999999999999987
Q ss_pred -------------CcEEEEecCCCCCeeEEEEcCCCC-EEEEEECCCcEEEecCC
Q psy4869 613 -------------RRIAYKLPGHNGSVNDVQFHPKEP-IIMSASSDKTIYLGESP 653 (2435)
Q Consensus 613 -------------~~~~~~l~~h~~~V~~l~fspd~~-~Lasgs~Dg~I~vWd~~ 653 (2435)
.+++..+.+|...|++++|+|+++ +|++++.||.|++|+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 478888899999999999999999 99999999999999986
No 153
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=9.1e-25 Score=286.36 Aligned_cols=304 Identities=14% Similarity=0.196 Sum_probs=250.1
Q ss_pred EEeCCCCEEEEEccC--C--eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccc-----ccccccc
Q psy4869 134 TGSKDTDIVLWDVVA--E--CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK-----TMAAHLT 204 (2435)
Q Consensus 134 Sgs~Dg~I~iWd~~~--~--~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~-----~~~~h~~ 204 (2435)
+++.|+.++||.+.. . +.+..+..|. .+.+++|+| ++.++++++.|+.|++||+++|+.+. .+.+|.+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 170 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLG 170 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCC
Confidence 455666555555433 4 4566666654 455999986 66788999999999999999999876 5568999
Q ss_pred eEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccc
Q psy4869 205 EVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKK 284 (2435)
Q Consensus 205 ~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~ 284 (2435)
.|++++|.+++.++++++.|+.|++||+++++.
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~----------------------------------------------- 203 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAY----------------------------------------------- 203 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCE-----------------------------------------------
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceE-----------------------------------------------
Confidence 999999999999999999999999999874310
Q ss_pred eEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCc
Q psy4869 285 WLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGE 364 (2435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~ 364 (2435)
...+.+|...
T Consensus 204 ----------------------------------------------------------------------~~~~~~~~~~ 213 (433)
T 3bws_A 204 ----------------------------------------------------------------------KATVDLTGKW 213 (433)
T ss_dssp ----------------------------------------------------------------------EEEEECSSSS
T ss_pred ----------------------------------------------------------------------EEEEcCCCCC
Confidence 0122356778
Q ss_pred EEEEEECCCCCEEEE-EeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe--------CCCeEEEEECC
Q psy4869 365 IFCSKYHPDGQYIAS-SGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS--------TDQTLAVWDLE 435 (2435)
Q Consensus 365 V~~l~fspdg~~Las-gs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s--------~Dg~I~vwd~~ 435 (2435)
+.+++|+|+++++++ ++.|+.|++||+.... ....+.. ...+.+++|+|++++|++++ .|+.|++||+.
T Consensus 214 ~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 214 SKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred eeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 899999999998855 4589999999997653 3334443 45699999999999999988 58899999999
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec------
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI------ 509 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~------ 509 (2435)
+++.+..+ .|...+..+.|.|+++.++++++.|+.|++||+.+++....+.+...+.+++|+|+|+++++++.
T Consensus 292 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 370 (433)
T 3bws_A 292 KEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPT 370 (433)
T ss_dssp TTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTT
T ss_pred CCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccc
Confidence 98877665 45557788999999989999999999999999999988888888888999999999999998876
Q ss_pred ---------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcC
Q psy4869 510 ---------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIR 561 (2435)
Q Consensus 510 ---------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~ 561 (2435)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|++.
T Consensus 371 ~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 371 EGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred cccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 57999999999999988876 457999999999999998875 9999999986
No 154
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=3e-25 Score=283.06 Aligned_cols=279 Identities=11% Similarity=0.147 Sum_probs=215.7
Q ss_pred ceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEE-EEEeCCCeEEEE
Q psy4869 354 PIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHI-FTCSTDQTLAVW 432 (2435)
Q Consensus 354 p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L-~s~s~Dg~I~vw 432 (2435)
|+..+.+|.+.|++++|+|||++|++|+.+| ++|||+....... .. +...+..+++.++++.+ ++++.|+.|++|
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~d~~v~iW 86 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM-SQ--EMRHLSKVRMLHRTNYVAFVTGVKEVVHIW 86 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE-EE--ECSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee-ee--ecCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence 3445688999999999999999999998775 7899987643322 22 22358888999888877 457778999999
Q ss_pred ECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC-cceEeecCcccEEEEEECCCCCEEEE--Eec
Q psy4869 433 DLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK-NQAVSMNNTYQVTSVAFNDTAECVLT--GGI 509 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~-~~~~~~~~~~~v~sv~~sp~g~~l~s--gs~ 509 (2435)
|+.+++.+..+. |...|.++.+.++. ++.+ .|+.|++||+..+ +.+..+.. ....+++++ .++++ |+.
T Consensus 87 d~~~~~~~~~~~-~~~~v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~--~~la~~sg~~ 157 (355)
T 3vu4_A 87 DDVKKQDVSRIK-VDAPVKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR--FGGVCEFSN--GLLVYSNEFN 157 (355)
T ss_dssp ETTTTEEEEEEE-CSSCEEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE--EEEEEEEET--TEEEEEESSC
T ss_pred ECCCCcEEEEEE-CCCceEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc--CCceEEEEc--cEEEEeCCCc
Confidence 999999999887 56678888887653 3333 4789999999987 65555544 445566777 66666 588
Q ss_pred CCeEEEEECCCCc---------------E-EEEEecCCCCEEEEEEcCCCCEEEEEECCCc-EEEEEcCCCCCCCceEEE
Q psy4869 510 DNDIKMWDLRTNS---------------V-VQKLRGHSDTVTGLSLSPDGSYILSNAMDNT-VRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 510 dg~V~lwD~~s~~---------------~-v~~l~~h~~~V~~i~~spdg~~las~s~Dg~-I~lWdl~~~~~~~~~v~~ 572 (2435)
||.|++||+++++ + +..+.+|.+.|.+++|+|||++|++|+.|++ |+|||++ ..+++..
T Consensus 158 ~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~----~~~~~~~ 233 (355)
T 3vu4_A 158 LGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTE----DGVLVRE 233 (355)
T ss_dssp TTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETT----TCCEEEE
T ss_pred CcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECC----CCcEEEE
Confidence 9999999999875 2 6788999999999999999999999999999 9999998 4677888
Q ss_pred Ee-C-cccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE--EEEec---------------------CCCCCee
Q psy4869 573 MS-G-HQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI--AYKLP---------------------GHNGSVN 627 (2435)
Q Consensus 573 ~~-~-h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~---------------------~h~~~V~ 627 (2435)
+. + |. ..|.+++|+|+|++|++|+.|+.|++||++.+.. ...+. .+.....
T Consensus 234 ~~~g~h~----~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (355)
T 3vu4_A 234 FRRGLDR----ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGC 309 (355)
T ss_dssp EECTTCC----SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCC
T ss_pred EEcCCCC----CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCce
Confidence 87 4 54 4799999999999999999999999999976531 11111 1123347
Q ss_pred EEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 628 DVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 628 ~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.++|+++++.|++++.||.+++|++.
T Consensus 310 ~~a~~~d~~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 310 KIAWISESSLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 79999999999999999999999986
No 155
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-26 Score=324.61 Aligned_cols=256 Identities=20% Similarity=0.335 Sum_probs=217.1
Q ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEcc--CCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEE
Q psy4869 110 ISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVV--AECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKI 187 (2435)
Q Consensus 110 ~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~--~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~i 187 (2435)
+..+.||.+.|++++|+|+|++||+|+.||.|+|||+. +...+..+.+|.++|++++|+++.++.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 45678999999999999999999999999999999998 4567788999999999999987655789999999999999
Q ss_pred EeccCCc--cccccccccceEEEEEEEeC--CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCce
Q psy4869 188 WDADTGD--CFKTMAAHLTEVWGVCVMRE--DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLT 263 (2435)
Q Consensus 188 Wd~~tg~--~~~~~~~h~~~V~~l~~~p~--~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (2435)
||+++++ .+..+.+|...|.+++|+|+ +.++++|+.||.|++||++.+...
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~------------------------- 136 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT------------------------- 136 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC-------------------------
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc-------------------------
Confidence 9999997 67888899999999999999 999999999999999998753110
Q ss_pred eeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecc
Q psy4869 264 VSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQK 343 (2435)
Q Consensus 264 v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~ 343 (2435)
T Consensus 137 -------------------------------------------------------------------------------- 136 (753)
T 3jro_A 137 -------------------------------------------------------------------------------- 136 (753)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccccccceeEecccCCcEEEEEECC-------------CCCEEEEEeCCCeEEEEecCCce---eeEEEeeCCCCC
Q psy4869 344 DVGRTSNLFAPIMLLEGHGGEIFCSKYHP-------------DGQYIASSGYDRQIFIWSVYGEC---ENIGVMSGHTGA 407 (2435)
Q Consensus 344 ~~~~~~~~~~p~~~l~gH~~~V~~l~fsp-------------dg~~Lasgs~Dg~I~iwd~~~~~---~~~~~l~~h~~~ 407 (2435)
....+.+|...|.+++|+| ++.+|++|+.||.|++||++... .....+.+|.+.
T Consensus 137 ----------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 137 ----------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp ----------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred ----------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 0112457888999999999 58999999999999999987542 445677899999
Q ss_pred eeEEEEccC---CCEEEEEeCCCeEEEEECCCCc-----eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC
Q psy4869 408 VMDLKFSTD---GCHIFTCSTDQTLAVWDLEKGQ-----RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK 479 (2435)
Q Consensus 408 V~~l~~s~d---g~~L~s~s~Dg~I~vwd~~tg~-----~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~ 479 (2435)
|.+++|+|+ +.+|++++.||.|++||+.+++ .+.....|...+.+++|+|++. ++++++.||.|++||++.
T Consensus 207 V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCEECCBCCS
T ss_pred EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEEEEEecCC
Confidence 999999999 8999999999999999998864 3333456888999999999874 677899999999999985
Q ss_pred Cc
Q psy4869 480 KN 481 (2435)
Q Consensus 480 ~~ 481 (2435)
+.
T Consensus 286 ~~ 287 (753)
T 3jro_A 286 EG 287 (753)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 156
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-26 Score=321.72 Aligned_cols=256 Identities=17% Similarity=0.288 Sum_probs=219.4
Q ss_pred ecCCCccceEEEeecCCCCeEEEEEcCCeEEEEECC--CCCeEEEecCCCCCEEEEEEcCC--CCEEEEEeCCCCEEEEE
Q psy4869 70 LLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTFSLD--TTDVISTFTGHKSAITVIQYDPL--GHRLATGSKDTDIVLWD 145 (2435)
Q Consensus 70 ~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~d~~--~~~~~~~l~gH~~~V~~l~f~p~--g~~laSgs~Dg~I~iWd 145 (2435)
.+.||...|.+++|+|++.++++|+.||.|++||+. ++..+..+.+|.+.|++++|+|+ +++|++|+.||.|++||
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 467899999999999999999999999999999998 56788899999999999999988 99999999999999999
Q ss_pred ccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcc--ccccccccceEEEEEEEe--------
Q psy4869 146 VVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDC--FKTMAAHLTEVWGVCVMR-------- 213 (2435)
Q Consensus 146 ~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~--~~~~~~h~~~V~~l~~~p-------- 213 (2435)
+.+++ .+..+.+|.+.|.+++|+|+.++.+|++++.||.|++||++++.. ...+.+|...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred CCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 99887 678889999999999999764467899999999999999998844 445678999999999999
Q ss_pred -----CCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEE
Q psy4869 214 -----EDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQV 288 (2435)
Q Consensus 214 -----~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 288 (2435)
++.+|++|+.||+|++||++.+...
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-------------------------------------------------- 193 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQT-------------------------------------------------- 193 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTE--------------------------------------------------
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCccc--------------------------------------------------
Confidence 5899999999999999998743100
Q ss_pred EEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEE
Q psy4869 289 FRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCS 368 (2435)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l 368 (2435)
..+...+.+|.+.|+++
T Consensus 194 ---------------------------------------------------------------~~~~~~~~~h~~~V~~l 210 (753)
T 3jro_A 194 ---------------------------------------------------------------YVLESTLEGHSDWVRDV 210 (753)
T ss_dssp ---------------------------------------------------------------EEEEEEECCCSSCEEEE
T ss_pred ---------------------------------------------------------------ceeeeeecCCCCcEEEE
Confidence 00112456899999999
Q ss_pred EECCC---CCEEEEEeCCCeEEEEecCCcee----eEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 369 KYHPD---GQYIASSGYDRQIFIWSVYGECE----NIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 369 ~fspd---g~~Lasgs~Dg~I~iwd~~~~~~----~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
+|+|+ |.+|++|+.||.|++||+..... .......|.+.|.+++|+|++++|++++.||.|++||+..+.
T Consensus 211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 99999 89999999999999999976421 223345689999999999999999999999999999998543
No 157
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=4.1e-24 Score=276.05 Aligned_cols=335 Identities=13% Similarity=0.187 Sum_probs=260.1
Q ss_pred cEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeE-EEeeCCCcEEEEEcCCCCCccccchhhhhhhcce
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYL-ISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQ 252 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l-~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~ 252 (2435)
.++++++.|+.|++||+++++++..+..|. .+.+++|+|+++++ ++++.|++|++||+.+++.+
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~-------------- 67 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-------------- 67 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE--------------
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEE--------------
Confidence 578999999999999999999998888775 48999999999986 57779999999998743100
Q ss_pred eecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeC
Q psy4869 253 LLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDR 332 (2435)
Q Consensus 253 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~ 332 (2435)
T Consensus 68 -------------------------------------------------------------------------------- 67 (391)
T 1l0q_A 68 -------------------------------------------------------------------------------- 67 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEE-eCCCeEEEEecCCceeeEEEeeCCCCCeeEE
Q psy4869 333 EKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASS-GYDRQIFIWSVYGECENIGVMSGHTGAVMDL 411 (2435)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasg-s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l 411 (2435)
..+..| ..+.+++|+|+|++|+.+ +.++.|++||+..... ...+. +...+.++
T Consensus 68 -----------------------~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~ 121 (391)
T 1l0q_A 68 -----------------------ATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGL 121 (391)
T ss_dssp -----------------------EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEE
T ss_pred -----------------------EEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceE
Confidence 001112 278899999999988654 4679999999986543 33344 44578999
Q ss_pred EEccCCCEE-EEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc
Q psy4869 412 KFSTDGCHI-FTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY 490 (2435)
Q Consensus 412 ~~s~dg~~L-~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~ 490 (2435)
+|++++++| ++++.|+.|++||+.+++.+..+..|.. +..+.|.+++..++++++.|+.|++||+++++....+.+..
T Consensus 122 ~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 200 (391)
T 1l0q_A 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC
Confidence 999999987 6777899999999999999888887654 58899999998888899999999999999998888888888
Q ss_pred cEEEEEECCCCCEEEEEe---cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEE-EEEECCCcEEEEEcCCCCCC
Q psy4869 491 QVTSVAFNDTAECVLTGG---IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYI-LSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs---~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~l-as~s~Dg~I~lWdl~~~~~~ 566 (2435)
.+.+++|+|+|++|++++ .++.|++||+++++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..
T Consensus 201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~---- 275 (391)
T 1l0q_A 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT---- 275 (391)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCC----
Confidence 899999999999999988 68999999999999998888765 57899999999988 5668899999999984
Q ss_pred CceEEEEeCccccccc-C-e---------EEEEEcCCC----------CEEEEecCCCeEEEEECCCCcEEEEecCCCCC
Q psy4869 567 ERCVKVMSGHQHNFEK-N-L---------LRCAWSVSG----------LYVTAGSADKCVYIWDTTTRRIAYKLPGHNGS 625 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~-~-i---------~~v~~spdg----------~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~ 625 (2435)
.+.+..+..+...... . + ....|+.+. ..+...+.|..+++||..++... .+..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~ 351 (391)
T 1l0q_A 276 NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP 351 (391)
T ss_dssp TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC
T ss_pred CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC
Confidence 4566666544322110 0 0 011122211 33555667889999999888642 23333
Q ss_pred eeEEEEcCCCCEEEEE
Q psy4869 626 VNDVQFHPKEPIIMSA 641 (2435)
Q Consensus 626 V~~l~fspd~~~Lasg 641 (2435)
...|+++|.+.++.
T Consensus 352 --~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 352 --THTYSETGIYTVRL 365 (391)
T ss_dssp --EECCSSCEEEEEEE
T ss_pred --eEEeCCCceEEEEE
Confidence 35788888766543
No 158
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.3e-24 Score=286.97 Aligned_cols=308 Identities=15% Similarity=0.132 Sum_probs=241.0
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCe---EEEEEec-------------------------------------
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFK---FFISLYG------------------------------------- 1080 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~---~~~~l~~------------------------------------- 1080 (2435)
.++.+++|+++|++|+++. ++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 5788999999999777665 8899999998888 6555543
Q ss_pred -----------------CCcCEEEEEEcCCCCEE-EEEECCCcEEEEEcc--CCceeEEEe--ccCCCEEEEEEccCCCE
Q psy4869 1081 -----------------HKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLD--YGDCHKSLL--AHEDSVTGVTFVPKTHY 1138 (2435)
Q Consensus 1081 -----------------h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~--t~~~~~~l~--~h~~~V~~v~fsp~~~~ 1138 (2435)
|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33379999999999996 889999999999999 888888886 56789999999999999
Q ss_pred EEEEeCCCcEEEEeCCCcceeE-EEEEEEeecccccCeEEEEEeCC---CCEEEEEeCCCcEEEEEccCCceeeE-eecc
Q psy4869 1139 FFTTSKDGRVKQWDADNFERIV-TLHFFISLYGHKLPVLSLDMSYD---STLIATGSGDRTVKVWGLDYGDCHKS-LLAH 1213 (2435)
Q Consensus 1139 l~s~s~Dg~V~iwD~~~~~~~~-~~~~~~~~~~h~~~V~~l~~s~d---g~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h 1213 (2435)
|++++.++.|++|++.+..... .. ..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++.+.. +.+|
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQ---EPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCC---CCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccc---eeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999998766442 11 123478899999999999 99999999999999999999988877 5589
Q ss_pred CCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1214 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1214 ~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
...|.+++|+ ++++|++++.|+.|++||+++.+.+..+........... + +
T Consensus 241 ~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~-----~--------------- 291 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLN--------D-----Q--------------- 291 (450)
T ss_dssp SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCC--------T-----T---------------
T ss_pred CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhh--------h-----c---------------
Confidence 9999999999 999999999999999999999887776653221100000 0 0
Q ss_pred cccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEc--ccc---eEEEEecCCCCCeEEEEEecC
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFL--DTF---KFFISLYGHKLPVLSLDMSYD 1367 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~--~~~---k~i~~~~~h~~~V~~la~spd 1367 (2435)
. .................+.+++|+|++++|++++ .++.|+||++ ..+ +.+..+..| +.|.+++|+|+
T Consensus 292 ~-----~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 292 H-----LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp S-----BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred c-----cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 0 0000000001112346789999999999999999 8999999999 555 778888888 89999999996
Q ss_pred CCEEEEEeC------CCcEEEEeCCC
Q psy4869 1368 STLIATGSG------DRTVKVWGLDY 1387 (2435)
Q Consensus 1368 g~~L~sGg~------Dg~V~iwdl~~ 1387 (2435)
+.+++.++. ++.|.+|.+..
T Consensus 366 ~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 366 EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred cEEEEEecccCCCCCCcceEEEEEEc
Confidence 555555443 45578887643
No 159
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=4.1e-24 Score=280.10 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=252.8
Q ss_pred CEEEEE---EcCCCCEEEEEE--------------CCCcEEEEE--cCCC--eEEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy4869 1042 QVLCAR---VSPDSKLLAVSL--------------LDTTVKIFF--LDTF--KFFISLYGHKLPVLSLDMSYDSTLIATG 1100 (2435)
Q Consensus 1042 ~v~~l~---~spdg~~Lavg~--------------~dg~V~i~d--~~~~--~~~~~l~~h~~~V~sl~~spdg~~L~Sg 1100 (2435)
.+..++ |+|++..+++.. .++.+.||. ..++ +.+..+..+ ..+.+++|+|++.+++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~ 140 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIPL 140 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEEB
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEEe
Confidence 445555 666666555433 223234444 4334 566666655 445699999977888888
Q ss_pred ECCCcEEEEEccCCceeEE-----EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1101 SGDRTVKVWGLDYGDCHKS-----LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1101 s~Dg~I~vWd~~t~~~~~~-----l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
+.++.|++||+.+++.+.. +.+|...|.+++|++++.++++++.|+.|++||+++++....+. .|...+
T Consensus 141 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~------~~~~~~ 214 (433)
T 3bws_A 141 LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD------LTGKWS 214 (433)
T ss_dssp TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE------CSSSSE
T ss_pred CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc------CCCCCe
Confidence 8899999999999988873 34688899999999999999999999999999999877665543 688899
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE--------CCCcEEEEECCCC
Q psy4869 1176 LSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS--------KDGRVKQWDADNF 1246 (2435)
Q Consensus 1176 ~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs--------~Dg~I~vwD~~~~ 1246 (2435)
.+++|+++++.+++++ .|+.|++||+++++.+..+.. ...+.+++|+|+++.|++++ .|+.|++||+++.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 9999999999886554 799999999999988777755 44599999999999999888 3677888877654
Q ss_pred ceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCc
Q psy4869 1247 ERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDS 1326 (2435)
Q Consensus 1247 ~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg 1326 (2435)
+.+..+ .....+.+++|+|++
T Consensus 294 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~~~~g 314 (433)
T 3bws_A 294 KLIDTI-----------------------------------------------------------GPPGNKRHIVSGNTE 314 (433)
T ss_dssp EEEEEE-----------------------------------------------------------EEEECEEEEEECSST
T ss_pred cEEeec-----------------------------------------------------------cCCCCcceEEECCCC
Confidence 332211 112356788999999
Q ss_pred cee-EEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeC---------------CCcEEEEeCCCCce
Q psy4869 1327 KLL-AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG---------------DRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1327 ~~l-avgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~---------------Dg~V~iwdl~~gk~ 1390 (2435)
+.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|||++|++++. ||.|++||+.++++
T Consensus 315 ~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 315 NKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred CEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 755 566899999999999998887776 6678999999999999988876 57999999999998
Q ss_pred EEEecccccceEEEEEeeCCCEEEEEeC-CCcEEEEECCC
Q psy4869 1391 HKSLLAHEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADN 1429 (2435)
Q Consensus 1391 ~~~~~~h~~~V~~laf~P~~~~laSgg~-Dg~V~lWd~~~ 1429 (2435)
+..+..+ ..+.+++|+|++.+|++++. |+.|++|+++.
T Consensus 394 ~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 394 KEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8887764 57999999999999988775 99999999875
No 160
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=5.6e-24 Score=274.75 Aligned_cols=310 Identities=16% Similarity=0.116 Sum_probs=250.9
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L-~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~ 80 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVA 80 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceE
Confidence 356777789999999999999999988775 58999999999876 566789999999999999988887665 899999
Q ss_pred EccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEE-EEEeCCCcEEEEEccCCceeeE
Q psy4869 1132 FVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLI-ATGSGDRTVKVWGLDYGDCHKS 1209 (2435)
Q Consensus 1132 fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~sgs~Dg~V~iwd~~t~~~~~~ 1209 (2435)
|+|++++|++++ .++.|++||+.+++....+. +...+.+++|+++++.+ ++++.|+.|++||+.+++.+..
T Consensus 81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-------CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 999999876554 67999999999887655543 44578999999999977 6777899999999999998887
Q ss_pred eeccCCCEEEEEEeeCCCEE-EEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccc
Q psy4869 1210 LLAHEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNRE 1288 (2435)
Q Consensus 1210 ~~~h~~~V~~i~~spd~~~l-vsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~ 1288 (2435)
+..| ..+.++.|+|+++.| ++++.|+.|++||+++.+.+..+.
T Consensus 154 ~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----------------------------------- 197 (391)
T 1l0q_A 154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------------------------------- 197 (391)
T ss_dssp EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------------
T ss_pred EecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-----------------------------------
Confidence 7655 467999999999887 456678999999998754332211
Q ss_pred ccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee---cCCeEEEEEcccceEEEEecCCCCCeEEEEEe
Q psy4869 1289 ADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL---LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMS 1365 (2435)
Q Consensus 1289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs---~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~s 1365 (2435)
....+.+++|+|+|++|++++ .++.|++||+.+++.+..+..|. .+.+++|+
T Consensus 198 ------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s 252 (391)
T 1l0q_A 198 ------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVT 252 (391)
T ss_dssp ------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEEC
T ss_pred ------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEc
Confidence 123567899999999999988 68999999999999988888765 47899999
Q ss_pred cCCCEE-EEEeCCCcEEEEeCCCCceEEEecccccceE---EEE------------EeeCC----------CEEEEEeCC
Q psy4869 1366 YDSTLI-ATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT---GVT------------FVPKT----------HYFFTTSKD 1419 (2435)
Q Consensus 1366 pdg~~L-~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~---~la------------f~P~~----------~~laSgg~D 1419 (2435)
|||++| ++++.|+.|++||+.+++++..+..|..+.. .+. |+.+. -.|.+.+.|
T Consensus 253 ~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~ 332 (391)
T 1l0q_A 253 PDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332 (391)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBS
T ss_pred cCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCC
Confidence 999977 6778999999999999999888876655421 122 22221 357777788
Q ss_pred CcEEEEECCCcee
Q psy4869 1420 GRVKQWDADNFER 1432 (2435)
Q Consensus 1420 g~V~lWd~~~~~~ 1432 (2435)
..+.+||+.+...
T Consensus 333 ~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 333 ATEWKWDFGDGSS 345 (391)
T ss_dssp CSEEEEECSSSCE
T ss_pred ceEEEEECCCCcc
Confidence 9999999986543
No 161
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.5e-24 Score=282.69 Aligned_cols=282 Identities=11% Similarity=0.052 Sum_probs=233.8
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc---eeEEEec-------------------------------------
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD---CHKSLLA------------------------------------- 1122 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~---~~~~l~~------------------------------------- 1122 (2435)
.++.+++|+++|++|+++ .++.|++||+.+|+ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999966655 57899999999998 6655543
Q ss_pred -----------------cCCCEEEEEEccCCCEE-EEEeCCCcEEEEeCC--CcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1123 -----------------HEDSVTGVTFVPKTHYF-FTTSKDGRVKQWDAD--NFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1123 -----------------h~~~V~~v~fsp~~~~l-~s~s~Dg~V~iwD~~--~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
|...|.+++|+|++++| ++++.|+.|++||+. ++.....+. ...+...|.+++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK----RFCFSKRPNAISIAE 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE----EEECSSCEEEEEECT
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee----cccCCCCceEEEEcC
Confidence 23369999999999986 888899999999998 776665543 135678999999999
Q ss_pred CCCEEEEEeCCCcEEEEEccCCceee----EeeccCCCEEEEEEeeC---CCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDYGDCHK----SLLAHEDSVTGVTFVPK---THYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t~~~~~----~~~~h~~~V~~i~~spd---~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
++.+|++|+.||.|++|++.+++... .+.+|...|.+++|+|+ +++|++++.|+.|++||+++.+.+..+
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~--- 236 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW--- 236 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE---
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee---
Confidence 99999999999999999999887554 77889999999999999 999999999999999998765543321
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
...+...+.+++|+ ++++|++|+.|
T Consensus 237 ------------------------------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 237 ------------------------------------------------------LFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp ------------------------------------------------------CCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ------------------------------------------------------ecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 01234678999999 99999999999
Q ss_pred CeEEEEEcccceEEEEecC-------------------------CCCCeEEEEEecCCCEEEEEe-CCCcEEEEeC--CC
Q psy4869 1336 TTVKIFFLDTFKFFISLYG-------------------------HKLPVLSLDMSYDSTLIATGS-GDRTVKVWGL--DY 1387 (2435)
Q Consensus 1336 G~V~v~d~~~~k~i~~~~~-------------------------h~~~V~~la~spdg~~L~sGg-~Dg~V~iwdl--~~ 1387 (2435)
|.|+|||+.+++.+..+.. ....|..++|+|++++|++++ .|+.|++|++ ..
T Consensus 262 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~ 341 (450)
T 2vdu_B 262 DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ 341 (450)
T ss_dssp SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS
T ss_pred CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC
Confidence 9999999999998888763 235699999999999999999 8999999999 66
Q ss_pred C---ceEEEecccccceEEEEEeeCCCEEEEEeC-------CCcEEEEECCC
Q psy4869 1388 G---DCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-------DGRVKQWDADN 1429 (2435)
Q Consensus 1388 g---k~~~~~~~h~~~V~~laf~P~~~~laSgg~-------Dg~V~lWd~~~ 1429 (2435)
+ +++..+..| ..|.+++|+|+ .++++++. +..|.+|.++.
T Consensus 342 ~~~l~~~~~~~~~-~~v~~~~~~~~-~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 342 KGDLALKQIITFP-YNVISLSAHND-EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TTCEEEEEEEECS-SCEEEEEEETT-EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCceeeccEeccC-CceEEEEecCC-cEEEEEecccCCCCCCcceEEEEEEc
Confidence 6 667777788 88999999995 45655543 55689998764
No 162
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.93 E-value=5e-25 Score=288.93 Aligned_cols=267 Identities=19% Similarity=0.358 Sum_probs=220.6
Q ss_pred EEEEECCCCCe-EEEecCCCCCEEEEEEcCC-CCEEEEEeCCCCEEEEEccC----------CeeEEEEecCCCcEEEEE
Q psy4869 99 LKTFSLDTTDV-ISTFTGHKSAITVIQYDPL-GHRLATGSKDTDIVLWDVVA----------ECGLHRLSGHKGVITDIR 166 (2435)
Q Consensus 99 i~i~d~~~~~~-~~~l~gH~~~V~~l~f~p~-g~~laSgs~Dg~I~iWd~~~----------~~~~~~l~gH~~~V~~v~ 166 (2435)
+..|...+++. +....+|.+.|++++|+|+ +.+||+|+.||.|+|||+.. ...+..+.+|.+.|++++
T Consensus 109 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 188 (430)
T 2xyi_A 109 FGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLS 188 (430)
T ss_dssp ---------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEE
T ss_pred cccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEE
Confidence 33343333433 2456679999999999997 68999999999999999987 567888999999999999
Q ss_pred EeecCCCcEEEEEeCCCcEEEEeccCCcc-------ccccccccceEEEEEEEe-CCCeEEEeeCCCcEEEEEcCCCCCc
Q psy4869 167 FMSQPGHHFVVSSAKDTFVKIWDADTGDC-------FKTMAAHLTEVWGVCVMR-EDSYLISGSNDAELKVWNVRDRSDI 238 (2435)
Q Consensus 167 ~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~-------~~~~~~h~~~V~~l~~~p-~~~~l~s~s~Dg~v~vwdl~~~~~~ 238 (2435)
|+|.. ..+|++|+.||.|++||++++.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++.....
T Consensus 189 ~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~ 267 (430)
T 2xyi_A 189 WNPNL-NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS 267 (430)
T ss_dssp ECTTS-TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS
T ss_pred eCCCC-CCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC
Confidence 98643 23899999999999999988543 345678999999999999 6778889999999999999853100
Q ss_pred cccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhh
Q psy4869 239 DTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTR 318 (2435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (2435)
T Consensus 268 -------------------------------------------------------------------------------- 267 (430)
T 2xyi_A 268 -------------------------------------------------------------------------------- 267 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceee
Q psy4869 319 SMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECEN 397 (2435)
Q Consensus 319 ~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~ 397 (2435)
.+...+.+|...|++++|+|++. +|++|+.||.|++||++.....
T Consensus 268 ----------------------------------~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~ 313 (430)
T 2xyi_A 268 ----------------------------------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313 (430)
T ss_dssp ----------------------------------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred ----------------------------------cceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence 01123457889999999999987 7999999999999999875566
Q ss_pred EEEeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCC--------------CceEEEEeccCccccccCcccCCCeE
Q psy4869 398 IGVMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEK--------------GQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 398 ~~~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~t--------------g~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+..+..|...|.+++|+|+++ +|++++.|+.|++||+.. .+.+..+.+|...|.++.|+|+++.+
T Consensus 314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 393 (430)
T 2xyi_A 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWI 393 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTE
T ss_pred eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCE
Confidence 778889999999999999885 689999999999999986 36778888999999999999999889
Q ss_pred EEEEeCCCeEEEEeCCCC
Q psy4869 463 IASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~ 480 (2435)
+++++.|+.|++|++...
T Consensus 394 l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 394 ICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEECCCCEEEeEcccc
Confidence 999999999999998643
No 163
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=3.2e-24 Score=260.80 Aligned_cols=281 Identities=15% Similarity=0.150 Sum_probs=202.9
Q ss_pred CEEEEEEcCCCC---EEEEEeCCCCEEEEEccCC---eeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC
Q psy4869 119 AITVIQYDPLGH---RLATGSKDTDIVLWDVVAE---CGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT 192 (2435)
Q Consensus 119 ~V~~l~f~p~g~---~laSgs~Dg~I~iWd~~~~---~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t 192 (2435)
.+.++.|-..|- -+++++ ...|++|+.... ++++++.+|..+|..|.+.|+..+.+.++-
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------- 106 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL------------- 106 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-------------
Confidence 456777766553 466665 456999999988 789999999999999999986655433221
Q ss_pred CccccccccccceEEEEEEEeC----CCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEE
Q psy4869 193 GDCFKTMAAHLTEVWGVCVMRE----DSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIE 268 (2435)
Q Consensus 193 g~~~~~~~~h~~~V~~l~~~p~----~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 268 (2435)
| .-|...|+.++++|+ +.++++++.+ +++|++.+++.+
T Consensus 107 ~------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv------------------------------ 148 (356)
T 2w18_A 107 G------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLV------------------------------ 148 (356)
T ss_dssp C------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEE------------------------------
T ss_pred c------cccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEE------------------------------
Confidence 1 245678999999999 8888887754 667765422100
Q ss_pred EEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCc
Q psy4869 269 VQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRT 348 (2435)
Q Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 348 (2435)
T Consensus 149 -------------------------------------------------------------------------------- 148 (356)
T 2w18_A 149 -------------------------------------------------------------------------------- 148 (356)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEcc---CCCEEEEEeC
Q psy4869 349 SNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFST---DGCHIFTCST 425 (2435)
Q Consensus 349 ~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~---dg~~L~s~s~ 425 (2435)
.....+|.+.|..++|+|+|+.++ .+.+|...+..++|++ ++.+|++++.
T Consensus 149 ------~ss~~g~d~~V~~~~~s~dG~~~~---------------------s~~~~~~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 149 ------SSSGTLSDQQVEVMTFAEDGGGKE---------------------NQFLMPPEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp ------EEESSSTTCEEEEEEECTTSCEEE---------------------EEEECCCSSCEEEEEEEETSTTEEEEEET
T ss_pred ------EecccCCCCcEEEEEECCCCceee---------------------eeccCCCceeeEEeeccCCCCceEEEecC
Confidence 000124555555555555554443 4557888899999998 7799999999
Q ss_pred CCeEEEEECCCCceEEEEeccCc---cccccCcccCCCeE-----------EEEEeCCCeEEEEeCCCCcceEee-----
Q psy4869 426 DQTLAVWDLEKGQRIKKMKGHST---FVNSCDPVRRGQLL-----------IASGSDDCTVKVWDPRKKNQAVSM----- 486 (2435)
Q Consensus 426 Dg~I~vwd~~tg~~v~~l~~h~~---~v~sv~~~~~~~~l-----------lasgs~Dg~I~vwD~~~~~~~~~~----- 486 (2435)
|++|+|||+.+|+.++.+.+|.. .+.+++|+|++..+ +++|+.|++|++||..+++.+..+
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p 281 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLP 281 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence 99999999999999999987654 44455789987554 478899999999999998876543
Q ss_pred -cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEE-EEEEcCCCCEEEEEECCCcEEEEEc
Q psy4869 487 -NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVT-GLSLSPDGSYILSNAMDNTVRIWDI 560 (2435)
Q Consensus 487 -~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~-~i~~spdg~~las~s~Dg~I~lWdl 560 (2435)
.+...+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|.+.+. +++|+|||++|++|+.|++|||||+
T Consensus 282 ~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 282 PGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 12223333333 377899999999999999999999999999988655 6899999999999999999999996
No 164
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=3.6e-24 Score=273.08 Aligned_cols=284 Identities=13% Similarity=0.085 Sum_probs=220.8
Q ss_pred ecCCCCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEE-EEeCCCeEEEEEccCCce
Q psy4869 881 AQGHHSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVL-VGTKDGRLLIVDIGAGEI 959 (2435)
Q Consensus 881 l~GH~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~La-vg~~dg~V~vwd~~sg~~ 959 (2435)
..+|...|.|++|+|||++||+|.++.++|||+.+++........ .+..+++.+++++++ +|+.|+.|.|||+.+++.
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 467999999999999999999999988999999988777665543 355678889888885 577889999999999998
Q ss_pred eecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccc-cccccccccccccccccceeeeeeccccc
Q psy4869 960 LEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELV-SVNREADEETKDVSRSHKVLSLLHTRTLK 1038 (2435)
Q Consensus 960 v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1038 (2435)
+..+. |...|.+++|+++. ++.+ .|+.|++|++... .... . +.
T Consensus 94 ~~~~~-~~~~v~~v~~~~~~------------~~~~-~~~~i~i~d~~~~~~~~~-----------------~-----~~ 137 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLSREF------------IVVS-YGDVISVFKFGNPWKRIT-----------------D-----DI 137 (355)
T ss_dssp EEEEE-CSSCEEEEEECSSE------------EEEE-ETTEEEEEESSTTCCBSS-----------------C-----CE
T ss_pred EEEEE-CCCceEEEEEcCCE------------EEEE-EcCEEEEEECCCCceeeE-----------------E-----ec
Confidence 88876 56699999998763 4433 4799999998643 1100 0 00
Q ss_pred cCCCEEEEEEcCCCCEEEE--EECCCcEEEEEcCCCe----------------EEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy4869 1039 LEEQVLCARVSPDSKLLAV--SLLDTTVKIFFLDTFK----------------FFISLYGHKLPVLSLDMSYDSTLIATG 1100 (2435)
Q Consensus 1039 ~~~~v~~l~~spdg~~Lav--g~~dg~V~i~d~~~~~----------------~~~~l~~h~~~V~sl~~spdg~~L~Sg 1100 (2435)
. ....+++++ .++++ |..+|.|++||+.+++ .+..+.+|...|.+++|+|++++|++|
T Consensus 138 ~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~ 213 (355)
T 3vu4_A 138 R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC 213 (355)
T ss_dssp E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE
Confidence 1 233456666 66776 4778999999998765 267789999999999999999999999
Q ss_pred ECCCc-EEEEEccCCceeEEEe-c-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEE--------------
Q psy4869 1101 SGDRT-VKVWGLDYGDCHKSLL-A-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH-------------- 1163 (2435)
Q Consensus 1101 s~Dg~-I~vWd~~t~~~~~~l~-~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~-------------- 1163 (2435)
+.|++ |++||+++++++..+. + |...|.+++|+|++++|++++.|+.|++||++.........
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 99998 9999999999999998 5 99999999999999999999999999999997653211100
Q ss_pred ---EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCc
Q psy4869 1164 ---FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1205 (2435)
Q Consensus 1164 ---~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~ 1205 (2435)
..............++|+++++.|++++.||.+++|++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 000001122234678999999999999999999999987543
No 165
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.6e-25 Score=280.97 Aligned_cols=269 Identities=9% Similarity=0.032 Sum_probs=211.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC---------CCce
Q psy4869 369 KYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE---------KGQR 439 (2435)
Q Consensus 369 ~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~---------tg~~ 439 (2435)
.+.+++.+|++|+.||.|++||+..+... ..+. ...|..+.|+|+ +++++.|+.|++|+.. +++.
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~-~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTI-TTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCE-EEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEE-EEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 34457889999999999999999765332 2232 467888888887 9999999999999655 5555
Q ss_pred EEEEe-ccCccccccCccc--CCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 440 IKKMK-GHSTFVNSCDPVR--RGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 440 v~~l~-~h~~~v~sv~~~~--~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
+..+. +|...|.++.|+| ++ .++++++.|+.|++||+++++..... .+...+.+++|+|+|.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 55554 6778899999999 65 67889999999999999998886555 3455799999999999999999999999
Q ss_pred EEECCCCcEE-EEEec-CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCC
Q psy4869 515 MWDLRTNSVV-QKLRG-HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVS 592 (2435)
Q Consensus 515 lwD~~s~~~v-~~l~~-h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spd 592 (2435)
+||+++++.+ ..+.+ |.+.|++|+|+|+|.+|++++ |++|++||++..... ..+..+..|...... .+++|+|+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~ 271 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT-LAYPTYTIPEFKTGT--VTYDIDDS 271 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC-BSSCCCBC-----CC--EEEEECTT
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc-eeecccccccccccc--eEEEECCC
Confidence 9999999987 88888 999999999999999999999 559999999853211 111112122211111 46999999
Q ss_pred CCEEEEecC-CCeEEEEECCCCcEEEEecCCCCCeeEEEEcC---CCCEEEEEECCCcEEEecC
Q psy4869 593 GLYVTAGSA-DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHP---KEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 593 g~~Lasgs~-Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fsp---d~~~Lasgs~Dg~I~vWd~ 652 (2435)
|++|++++. |+.|+||++......... .++..++|.+ +...|++++.||.++++-.
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~ 331 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK 331 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred CCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence 999999998 999999999765443332 5678899998 8889999999999987643
No 166
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.9e-24 Score=279.71 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=217.6
Q ss_pred cccCCCEEEEEEcC---CC-CEEEEEECCCcEEEEEcCCC-------eEEE--EEecCCcCEEEEEEcCCCCEEEEEECC
Q psy4869 1037 LKLEEQVLCARVSP---DS-KLLAVSLLDTTVKIFFLDTF-------KFFI--SLYGHKLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1037 ~~~~~~v~~l~~sp---dg-~~Lavg~~dg~V~i~d~~~~-------~~~~--~l~~h~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
+.......++.|.. ++ .++++|. ++.|.+|+.... .... ....+..++..+.|++...
T Consensus 12 lpl~~~p~~~~w~~~~~~~~~l~a~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 82 (393)
T 4gq1_A 12 LPLNVRPYTTTWCSQSPSCSNLLAIGH-DTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCS-------- 82 (393)
T ss_dssp CCTTCCEEEEEECTTSGGGTTEEEEEE-SSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCE--------
T ss_pred ecCCCCCeEEEEeCCCCCCCCEEEEEC-CCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCcc--------
Confidence 34456667777743 33 4666665 788999975311 1111 1122444555555543221
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC-
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY- 1182 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~- 1182 (2435)
.....|...+....+.+++.+|++++.|++|++||.+.+..... .....+.+|...|++++|+|
T Consensus 83 --------------~~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~-~~~~~~~gH~~~v~~v~~~p~ 147 (393)
T 4gq1_A 83 --------------YSENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ-HVLGGKSGHHNFVNDIDIADV 147 (393)
T ss_dssp --------------EECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEE-EEECTTTSCSSCEEEEEEEEE
T ss_pred --------------ccccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCcccee-eeecccCCCCCceEEEEEccc
Confidence 11122444445556677888999999999999999988755432 23345678999999999997
Q ss_pred -------CCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCC-CEEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1183 -------DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKT-HYFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1183 -------dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~-~~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
++++|++|+.|++|+|||++++..+..+..|...|.+++|+|++ ++|++++.|+.|++||++..+.......
T Consensus 148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred cccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 78999999999999999999988888888999999999999976 5799999999999999998766544322
Q ss_pred CCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec-CCcceeEEee
Q psy4869 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS-PDSKLLAVSL 1333 (2435)
Q Consensus 1255 ~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s-pdg~~lavgs 1333 (2435)
...... +..+. ++..... .......+...+.++.|+ |||+.+++++
T Consensus 228 ~~~~~~-----------~~~~s-~~~~~~~---------------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 228 TELVKN-----------PWLLT-LNTLPLV---------------------NTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ---CSC-----------CCSEE-EESGGGC---------------------------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred cCCccc-----------ceEEe-cccccce---------------------eeeecccccccceeeeeecCCCCEEEEEe
Confidence 111000 00000 0000000 000112345567788876 8999999999
Q ss_pred cCCeEEEEEcccceEEEEecCCCCCeEEEEEec--------------------CCCEEEEEeCCCcEEEEeCCCCceEEE
Q psy4869 1334 LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY--------------------DSTLIATGSGDRTVKVWGLDYGDCHKS 1393 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp--------------------dg~~L~sGg~Dg~V~iwdl~~gk~~~~ 1393 (2435)
.|+.+++||+..++....+..|...+..+.+.| ++.++++|+.||.|++||+.+++++..
T Consensus 275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 999999999988777766666665555444433 445788899999999999999999988
Q ss_pred ecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCcee
Q psy4869 1394 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1432 (2435)
Q Consensus 1394 ~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~ 1432 (2435)
...|..+|++|+|+|+|++||+++.|| +.+|.+..+.+
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~gf~~ 392 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMGFTR 392 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGGGCC
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeCccc
Confidence 889999999999999999999998665 77777765544
No 167
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=99.92 E-value=1.2e-26 Score=288.83 Aligned_cols=96 Identities=10% Similarity=0.059 Sum_probs=80.6
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhc
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQS 2252 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~ 2252 (2435)
..|..|+++. ...++||||||.||+|| |||+++++|+.++++.
T Consensus 47 ~~~~~F~~~~-----~~~~tpVknQg~cGsCW--------------------------------aFs~~~~le~~~~~k~ 89 (453)
T 2cb5_A 47 RAQHVFQHAV-----PQEGKPITNQKSSGRSW--------------------------------IFSCLNVMRLPFMKKL 89 (453)
T ss_dssp HCCCCCSEEC-----SCCCSSCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred cCCCceeeee-----ccCCCCcccCCCccchH--------------------------------hhhhHHHHHHHHHHHh
Confidence 3577899988 66799999999999999 9999999999999984
Q ss_pred -CCCcCccCCc----------------cceecccCCCCCCC--C-------CCCCCCCCCCChhhHHHHHHHcCccCCCc
Q psy4869 2253 -KGQVKPILSP----------------QHLICSCTNCTRMH--T-------KTPMSMCMGGDSAAAWMYWINAGLVDGGD 2306 (2435)
Q Consensus 2253 -~~~~~~~lS~----------------q~l~~~~~~c~~~~--~-------~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~ 2306 (2435)
+..+. ||+ |+|+ ||.... . -+++.||+||+...|++|++++|++.+.+
T Consensus 90 ~~~~~~--lSe~yl~fwDKlEkan~flq~li----dc~~~~~~~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~ 163 (453)
T 2cb5_A 90 NIEEFE--FSQSYLFFWDKVERCYFFLSAFV----DTAQRKEPEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKC 163 (453)
T ss_dssp TCSCCC--BCHHHHHHHHHHHHHHHHHHHHH----HHHHTTCCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGG
T ss_pred cCCeEe--eChHHHHHHHHHHHhhHHHHHHH----HHHhccCCcchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhh
Confidence 55555 999 9999 775310 0 02357899999999999999999999999
Q ss_pred ccCCC
Q psy4869 2307 YGTHD 2311 (2435)
Q Consensus 2307 y~~~~ 2311 (2435)
|||..
T Consensus 164 yP~~~ 168 (453)
T 2cb5_A 164 FPESY 168 (453)
T ss_dssp SCCCT
T ss_pred ccccc
Confidence 99965
No 168
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.5e-24 Score=275.11 Aligned_cols=272 Identities=13% Similarity=0.108 Sum_probs=212.5
Q ss_pred CCcEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcc
Q psy4869 172 GHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLN 251 (2435)
Q Consensus 172 ~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~ 251 (2435)
++.+|++|+.||+|++||+++++.+..+. ...|.++.++|. +++++.|++|++|+.+..
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~---------------- 105 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQ---------------- 105 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTE----------------
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCc----------------
Confidence 45689999999999999999999887776 467788888887 999999999999997631
Q ss_pred eeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEe
Q psy4869 252 QLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYD 331 (2435)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d 331 (2435)
+.+|+
T Consensus 106 ---------------------------------------------------------------------------~~~~~ 110 (343)
T 3lrv_A 106 ---------------------------------------------------------------------------ITILD 110 (343)
T ss_dssp ---------------------------------------------------------------------------EEEEE
T ss_pred ---------------------------------------------------------------------------eEEee
Confidence 01122
Q ss_pred CccceeeeeecccccCccccccceeEecccCCcEEEEEECC--CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCee
Q psy4869 332 REKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHP--DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVM 409 (2435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fsp--dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~ 409 (2435)
....... .....+|.+.|.+++|+| ++++|++|+.||.|++||+............|...|.
T Consensus 111 ~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~ 174 (343)
T 3lrv_A 111 SKTNKVL----------------REIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS 174 (343)
T ss_dssp TTTCCEE----------------EEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC
T ss_pred cCCccee----------------EEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE
Confidence 1111000 012236788999999999 9999999999999999999876543222245667899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCceE-EEEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec
Q psy4869 410 DLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI-KKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN 487 (2435)
Q Consensus 410 ~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v-~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~ 487 (2435)
+++|+|++.+|++|+.||.|++||+++++.+ ..+.+ |...|.+++|+|++. +|+++++ +.|++||+++++....+.
T Consensus 175 ~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~~-~~v~iwd~~~~~~~~~~~ 252 (343)
T 3lrv_A 175 SGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGY-WMVVECD-QTVVCFDLRKDVGTLAYP 252 (343)
T ss_dssp EEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSS-EEEEEES-SBEEEEETTSSTTCBSSC
T ss_pred EEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCC-EEEEEeC-CeEEEEEcCCCCcceeec
Confidence 9999999999999999999999999999887 78888 999999999999874 5667774 499999999887765442
Q ss_pred ----CcccE--EEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEEecCCCCEEEEEEcC---CCCEEEEEECCCcEEE
Q psy4869 488 ----NTYQV--TSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSP---DGSYILSNAMDNTVRI 557 (2435)
Q Consensus 488 ----~~~~v--~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~sp---dg~~las~s~Dg~I~l 557 (2435)
+...+ .+++|+|+|++|++++. |+.|++|++......... .++..+.|.+ +++.+++++.|+.+++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 253 TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEE
Confidence 22333 46999999999999998 999999999765433222 5678889998 8999999999999998
Q ss_pred EEcC
Q psy4869 558 WDIR 561 (2435)
Q Consensus 558 Wdl~ 561 (2435)
+-..
T Consensus 329 ~~~~ 332 (343)
T 3lrv_A 329 ILKT 332 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7644
No 169
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=3.6e-23 Score=251.59 Aligned_cols=281 Identities=13% Similarity=0.109 Sum_probs=210.4
Q ss_pred CEEEEEEcCCCC---EEEEEECCCcEEEEEcCCC---eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCc
Q psy4869 1042 QVLCARVSPDSK---LLAVSLLDTTVKIFFLDTF---KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGD 1115 (2435)
Q Consensus 1042 ~v~~l~~spdg~---~Lavg~~dg~V~i~d~~~~---~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~ 1115 (2435)
.+.++.|-..|- -+++++ ...|++|+..+. +.+.++.+|+.+|..|.+.||..-|+... +=+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~----- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA------LGN----- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE------ECS-----
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee------ecc-----
Confidence 466677766553 555666 678999998877 89999999999999999999864444211 111
Q ss_pred eeEEEeccCCCEEEEEEccC----CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe
Q psy4869 1116 CHKSLLAHEDSVTGVTFVPK----THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS 1191 (2435)
Q Consensus 1116 ~~~~l~~h~~~V~~v~fsp~----~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 1191 (2435)
-+...|..++|+|+ +..+++++.+ +++|++. +++++.+++
T Consensus 109 ------~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~----------------------------~g~lv~ss~ 152 (356)
T 2w18_A 109 ------LEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLT----------------------------KRRLVSSSG 152 (356)
T ss_dssp ------SSEEEEEEECC------CCEEEEEEEEE--EEEEEET----------------------------TTEEEEEES
T ss_pred ------ccccceEEEEECCCccccccEEEeCCCe--EEEEecC----------------------------CCcEEEecc
Confidence 13446889999999 8888887743 5666532 344455533
Q ss_pred --CCCcEEEEEc-cCCceeeEeeccCCCEEEEEEee---CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1192 --GDRTVKVWGL-DYGDCHKSLLAHEDSVTGVTFVP---KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1192 --~Dg~V~iwd~-~t~~~~~~~~~h~~~V~~i~~sp---d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
.|+.|++|++ ..|+.+..+..|...++.++|++ ++..|++++.|++|++||+++++.+..+..+...
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~------- 225 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY------- 225 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---------
T ss_pred cCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-------
Confidence 6899999999 55888888889999999999999 7799999999999999999999887766421110
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCccee------------EEee
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL------------AVSL 1333 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~l------------avgs 1333 (2435)
-..+.+++|+|||..+ +.|+
T Consensus 226 ------------------------------------------------v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 226 ------------------------------------------------QASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp -------------------------------------------------CCCEEEEEEETTEEEEEEC------------
T ss_pred ------------------------------------------------eeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 1235566777777765 5688
Q ss_pred cCCeEEEEEcccceEEEEe-----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceE-EEEEe
Q psy4869 1334 LDTTVKIFFLDTFKFFISL-----YGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVT-GVTFV 1407 (2435)
Q Consensus 1334 ~dG~V~v~d~~~~k~i~~~-----~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~-~laf~ 1407 (2435)
.|+.+++||..+++.+..+ .+|.+.+.+.+++ +.++++|+.|+.|+|||+.+|+++..+.+|...|. .++|+
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 9999999999999887665 3676666555444 88999999999999999999999999999987655 68999
Q ss_pred eCCCEEEEEeCCCcEEEEEC
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~ 1427 (2435)
|++.+|+||+.|+.|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999996
No 170
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=99.91 E-value=1.8e-25 Score=278.58 Aligned_cols=94 Identities=15% Similarity=0.212 Sum_probs=66.9
Q ss_pred CCCCccccCccCCCCCCCcccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhh-
Q psy4869 2173 AIPETFDAREEWPQCKDVIGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQ- 2251 (2435)
Q Consensus 2173 ~lP~~~Dwr~~~~~~~~~v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~- 2251 (2435)
..|..|+|+. .+.++||||||.||+|| |||+++++|+.++++
T Consensus 52 ~~~~~F~~~~-----~~~vtpVknQg~cGsCW--------------------------------aFs~~~~lE~~~~~~~ 94 (457)
T 2e01_A 52 QDNRVFNTVV-----STDSTPVTNQKSSGRCW--------------------------------LFAATNQLRLNVLSEL 94 (457)
T ss_dssp HCCCCCSEEC-----C------------CCHH--------------------------------HHHHHHHHHHHHHHHT
T ss_pred CCCCceEEEe-----cCCccCcccCCCCccch--------------------------------hHHhHHHHHHHHHHHh
Confidence 4677888887 66799999999999999 999999999999998
Q ss_pred cCCCcCccCCc----------------cceecccCCCCCCCCC-------CCCCCCCCCChhhHHHHHHHcCccCCCccc
Q psy4869 2252 SKGQVKPILSP----------------QHLICSCTNCTRMHTK-------TPMSMCMGGDSAAAWMYWINAGLVDGGDYG 2308 (2435)
Q Consensus 2252 ~~~~~~~~lS~----------------q~l~~~~~~c~~~~~~-------~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~ 2308 (2435)
++..+. ||+ |+|+ ||...... ..+.||+||....+++|++++||+.+++||
T Consensus 95 ~~~~~~--LSe~yl~~~dklEkan~flq~lv----dc~~~~~~~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~yP 168 (457)
T 2e01_A 95 NLKEFE--LSQAYLFFYDKLEKANYFLDQIV----SSADQDIDSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYG 168 (457)
T ss_dssp TCSSCC--BCHHHHHHHHHHHHHHHHHHHHH----HTTTSCTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSC
T ss_pred CCCcee--eCChhhhhhhHHHHHHHHHHHHH----HhcCCcccchhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhcC
Confidence 655555 999 6777 66531000 035789999999999999999999999999
Q ss_pred C
Q psy4869 2309 T 2309 (2435)
Q Consensus 2309 ~ 2309 (2435)
|
T Consensus 169 ~ 169 (457)
T 2e01_A 169 D 169 (457)
T ss_dssp S
T ss_pred C
Confidence 9
No 171
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.91 E-value=5e-22 Score=266.69 Aligned_cols=333 Identities=12% Similarity=0.035 Sum_probs=266.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEc--cCCceeEEEeccC
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSLLAHE 1124 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~--~t~~~~~~l~~h~ 1124 (2435)
+|+|++.+++++..++.|.+||..+++++..+..+.. +..++|+|||++|++++.|+.|++||+ .+++++..+. +.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 4788998888888899999999999999999984333 899999999999999999999999999 8888888887 45
Q ss_pred CCEEEEEEcc----CCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEee-c----ccccCeEEEEEeCCCCE-EEEEeCC
Q psy4869 1125 DSVTGVTFVP----KTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISL-Y----GHKLPVLSLDMSYDSTL-IATGSGD 1193 (2435)
Q Consensus 1125 ~~V~~v~fsp----~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~-~----~h~~~V~~l~~s~dg~~-l~sgs~D 1193 (2435)
..+..++|+| +++++++++ .++.|.+||..+.+.+..+...... . .....+..+.+++++.. +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 5689999999 999999888 4899999999998887766421100 0 12337899999997665 4556678
Q ss_pred CcEEEEEccCCceee--EeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1194 RTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~--~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
+.|.+||+.+++.+. .+ .+...+.++.|+|++++|++++ .+++|.+||..+.+.+..+.....
T Consensus 302 g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~------------- 367 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT------------- 367 (543)
T ss_dssp TEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-------------
T ss_pred CeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC-------------
Confidence 999999998876544 33 4667788999999999887766 589999999998766554432110
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-cceeEEee-cCCeEEEEEccc---
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAVSL-LDTTVKIFFLDT--- 1345 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g~~lavgs-~dG~V~v~d~~~--- 1345 (2435)
++.+....+ ++|+ |..++++. .++.|.|||.++
T Consensus 368 -----------------------------------------ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 368 -----------------------------------------PHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp -----------------------------------------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred -----------------------------------------CCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 011111122 3576 66677765 589999999998
Q ss_pred ----ceEEEEecCCCCCeEEEEEecCCCEEEEEe-------CCCcEEEEeCCCCceE-EEe--------cccccceEEEE
Q psy4869 1346 ----FKFFISLYGHKLPVLSLDMSYDSTLIATGS-------GDRTVKVWGLDYGDCH-KSL--------LAHEDSVTGVT 1405 (2435)
Q Consensus 1346 ----~k~i~~~~~h~~~V~~la~spdg~~L~sGg-------~Dg~V~iwdl~~gk~~-~~~--------~~h~~~V~~la 1405 (2435)
++++..+.+|.+.+..++++|||++|+++. .++.|.+||+.++++. ..+ ..|...|..++
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 485 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 485 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEE
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEecc
Confidence 899999999999999999999999999987 3789999999999877 443 35677899999
Q ss_pred EeeCCCEEEEEe-----CCCcEEEEECCCceeEEEEe
Q psy4869 1406 FVPKTHYFFTTS-----KDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1406 f~P~~~~laSgg-----~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
|+|+|..+..+. .|+.|.|||..+.++++.++
T Consensus 486 ~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 486 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 999998777542 47999999999999998876
No 172
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=4.2e-22 Score=267.35 Aligned_cols=337 Identities=11% Similarity=0.068 Sum_probs=257.1
Q ss_pred EEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEec--cCCcccccccc
Q psy4869 124 QYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDA--DTGDCFKTMAA 201 (2435)
Q Consensus 124 ~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~--~tg~~~~~~~~ 201 (2435)
+|+|++.++++++.|++|.+||..+++.+.++..+.. +..++|+| ++++|++++.|++|++||+ .+++++.++..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEEec
Confidence 3889999999999999999999999999999883333 89999975 5678999999999999999 89998888874
Q ss_pred ccceEEEEEEEe----CCCeEEEee-CCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccc
Q psy4869 202 HLTEVWGVCVMR----EDSYLISGS-NDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELK 276 (2435)
Q Consensus 202 h~~~V~~l~~~p----~~~~l~s~s-~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 276 (2435)
...+..++|+| +|+++++++ .|++|.+||..+.+.+..+ .
T Consensus 221 -g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i--------------------------~-------- 265 (543)
T 1nir_A 221 -GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV--------------------------S-------- 265 (543)
T ss_dssp -CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEE--------------------------E--------
T ss_pred -CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceee--------------------------c--------
Confidence 45679999999 999999888 4899999998754321100 0
Q ss_pred cccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCcccccccee
Q psy4869 277 NLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIM 356 (2435)
Q Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~ 356 (2435)
.. . ... +
T Consensus 266 ---~~---------------g--~~~----------------------------~------------------------- 272 (543)
T 1nir_A 266 ---TR---------------G--MTV----------------------------D------------------------- 272 (543)
T ss_dssp ---CC---------------E--ECS----------------------------S-------------------------
T ss_pred ---cc---------------C--ccc----------------------------C-------------------------
Confidence 00 0 000 0
Q ss_pred EecccC-CcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEE
Q psy4869 357 LLEGHG-GEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWD 433 (2435)
Q Consensus 357 ~l~gH~-~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd 433 (2435)
...-|. ..+..+.++|++. ++++...++.|.+||.............+...+.+++|+|||++|++++ .++.|.+||
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 000122 3678899999765 4666778899999998754322212223667889999999999877665 588999999
Q ss_pred CCCCceEEEEec----cCccccccCcccCCCeEEEEEe-CCCeEEEEeCCC-------CcceEeec-CcccEEEEEECCC
Q psy4869 434 LEKGQRIKKMKG----HSTFVNSCDPVRRGQLLIASGS-DDCTVKVWDPRK-------KNQAVSMN-NTYQVTSVAFNDT 500 (2435)
Q Consensus 434 ~~tg~~v~~l~~----h~~~v~sv~~~~~~~~llasgs-~Dg~I~vwD~~~-------~~~~~~~~-~~~~v~sv~~sp~ 500 (2435)
..+++.+..+.. |......+ +.|++..+++++. .|++|.+||+.+ .+.+..+. +...+..++|+|+
T Consensus 353 ~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd 431 (543)
T 1nir_A 353 SKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK 431 (543)
T ss_dssp TTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT
T ss_pred CCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC
Confidence 999999888874 43322222 3566567777776 689999999988 67777775 4456788999999
Q ss_pred CCEEEEEe-------cCCeEEEEECCCCcEE-EEE--------ecCCCCEEEEEEcCCCCEEEEEE-----CCCcEEEEE
Q psy4869 501 AECVLTGG-------IDNDIKMWDLRTNSVV-QKL--------RGHSDTVTGLSLSPDGSYILSNA-----MDNTVRIWD 559 (2435)
Q Consensus 501 g~~l~sgs-------~dg~V~lwD~~s~~~v-~~l--------~~h~~~V~~i~~spdg~~las~s-----~Dg~I~lWd 559 (2435)
+++|++++ .++.|.+||+.+++.. ..+ ..|...+..+.|+|||+.++.+. .|+.|.|||
T Consensus 432 g~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 432 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 99999987 3789999999998876 444 35678899999999999999763 479999999
Q ss_pred cCCCCCCCceEEEEeCc
Q psy4869 560 IRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 560 l~~~~~~~~~v~~~~~h 576 (2435)
.. ..+++..+...
T Consensus 512 ~~----t~~~~~~i~~~ 524 (543)
T 1nir_A 512 DK----TLKLKAVVKDP 524 (543)
T ss_dssp TT----TTEEEEEECCT
T ss_pred CC----CceEEEeecCC
Confidence 88 45777777654
No 173
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=5.2e-22 Score=258.56 Aligned_cols=304 Identities=11% Similarity=0.091 Sum_probs=239.0
Q ss_pred CCCCEEEEEEcCCC-CEEEEEe----CCC----CEEEEEc--cCCeeE--EEEecCCCcEEEEEEeecC-----------
Q psy4869 116 HKSAITVIQYDPLG-HRLATGS----KDT----DIVLWDV--VAECGL--HRLSGHKGVITDIRFMSQP----------- 171 (2435)
Q Consensus 116 H~~~V~~l~f~p~g-~~laSgs----~Dg----~I~iWd~--~~~~~~--~~l~gH~~~V~~v~~~~~~----------- 171 (2435)
+...++..+|.+.| +++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++.+.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 34578888899888 5677886 467 8999999 888876 5589999988888775411
Q ss_pred -CCcEEEEEeCC------CcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCC---cEEEEEcCCCCCcccc
Q psy4869 172 -GHHFVVSSAKD------TFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDA---ELKVWNVRDRSDIDTE 241 (2435)
Q Consensus 172 -~~~~l~S~s~D------g~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg---~v~vwdl~~~~~~~~~ 241 (2435)
.+..++.++.+ +.|++||++ |...+.+.+|...|.+++|+|+|++|++++.|+ .|++||+++++.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~---- 215 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---- 215 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE----
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE----
Confidence 12345555443 799999997 556788888999999999999999999999885 999999875310
Q ss_pred chhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcc
Q psy4869 242 DKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMK 321 (2435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (2435)
T Consensus 216 -------------------------------------------------------------------------------- 215 (415)
T 2hqs_A 216 -------------------------------------------------------------------------------- 215 (415)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEE-EEeCCCe--EEEEecCCceeeE
Q psy4869 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIA-SSGYDRQ--IFIWSVYGECENI 398 (2435)
Q Consensus 322 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~La-sgs~Dg~--I~iwd~~~~~~~~ 398 (2435)
..+.+|.+.+.+++|+|||++|+ +++.++. |++||+.+.. .
T Consensus 216 ----------------------------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~ 259 (415)
T 2hqs_A 216 ----------------------------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--I 259 (415)
T ss_dssp ----------------------------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--E
T ss_pred ----------------------------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--E
Confidence 01234566788999999999888 6666654 9999987653 3
Q ss_pred EEeeCCCCCeeEEEEccCCCEEEEEeC-CC--eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--CeEE
Q psy4869 399 GVMSGHTGAVMDLKFSTDGCHIFTCST-DQ--TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD--CTVK 473 (2435)
Q Consensus 399 ~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg--~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D--g~I~ 473 (2435)
..+..|...+..++|+|||++|+.++. ++ .|++||+.+++. ..+..|...+..+.|+|++..+++++..+ ..|.
T Consensus 260 ~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~ 338 (415)
T 2hqs_A 260 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA 338 (415)
T ss_dssp EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEE
Confidence 467788899999999999999998886 44 688889988764 45556777788899999998776666553 5899
Q ss_pred EEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCC---eEEEEECCCCcEEEEEecCCCCEEEEEEcCCC
Q psy4869 474 VWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDN---DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDG 543 (2435)
Q Consensus 474 vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg---~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg 543 (2435)
+||+.+++......+ ..+.+++|+|+|++|++++.++ .|++||+. ++....+.+|.+.|.+++|+|.-
T Consensus 339 ~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 339 KQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 999998876443333 4899999999999999988777 79999987 55677889999999999999964
No 174
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=99.88 E-value=3.1e-24 Score=261.73 Aligned_cols=80 Identities=25% Similarity=0.323 Sum_probs=69.8
Q ss_pred cccccCCCCCCCcccCCcCCccccccceeeeccCCcccccccccccceehhHhhhhhhhhhcCCCcCccCCccceecccC
Q psy4869 2191 IGKVWDQGACQSCWVSHQPRTAGLKGLFSFIKYGQGQERTLSVWDKAISAASVMSDRICIQSKGQVKPILSPQHLICSCT 2270 (2435)
Q Consensus 2191 v~~v~dQg~CgsCw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~e~~~~~~~~~~~~~~lS~q~l~~~~~ 2270 (2435)
++||||||.||+|| |||+++++|+.++++.+..+. ||+|+|+
T Consensus 22 vtpVknQg~cGsCW--------------------------------aFSa~~~lE~~~~~k~~~~~~--LSeq~Lv---- 63 (383)
T 3pw3_A 22 ITSVKNQNRAGTCW--------------------------------CYSSYSFLESELLRMGKGEYD--LSEMFTV---- 63 (383)
T ss_dssp CCCCCBCCBSSCHH--------------------------------HHHHHHHHHHHHHHTTCCCCC--BCHHHHH----
T ss_pred CCCcccCCCCcHHH--------------------------------HHHhHHHHHHHHHHHcCCCCc--cChHHHH----
Confidence 79999999999999 999999999999998876665 9999999
Q ss_pred CCCCCC-------CCCCCCCCCCCChhhHHHHHHHcCccCCCccc
Q psy4869 2271 NCTRMH-------TKTPMSMCMGGDSAAAWMYWINAGLVDGGDYG 2308 (2435)
Q Consensus 2271 ~c~~~~-------~~~~~~gC~gg~~~~a~~~~~~~Gi~~~~~y~ 2308 (2435)
||+... ..+.+.||+||.+..|++|++++||+.+.+||
T Consensus 64 dcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~Givpe~~YP 108 (383)
T 3pw3_A 64 YNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFGLVPEEEMR 108 (383)
T ss_dssp HHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTCCCBGGGSC
T ss_pred hhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcCcCcHHhCC
Confidence 775311 01235789999999999999999999999999
No 175
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.88 E-value=1e-20 Score=246.35 Aligned_cols=300 Identities=16% Similarity=0.042 Sum_probs=234.6
Q ss_pred CCEEEEEEcCCCC-EEEEEE----CCC----cEEEEEc--CCCeEE--EEEecCCcCEEEEEEcC--------------C
Q psy4869 1041 EQVLCARVSPDSK-LLAVSL----LDT----TVKIFFL--DTFKFF--ISLYGHKLPVLSLDMSY--------------D 1093 (2435)
Q Consensus 1041 ~~v~~l~~spdg~-~Lavg~----~dg----~V~i~d~--~~~~~~--~~l~~h~~~V~sl~~sp--------------d 1093 (2435)
..+....|.+.|. ++++|. .+| .|++||+ .+++.+ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3566677888775 555665 457 8999999 888877 45888888888777764 2
Q ss_pred CCEEEEEECC------CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCcceeEEEEE
Q psy4869 1094 STLIATGSGD------RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADNFERIVTLHF 1164 (2435)
Q Consensus 1094 g~~L~Sgs~D------g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg---~V~iwD~~~~~~~~~~~~ 1164 (2435)
+..++.++.+ +.|++||++ +.....+..|...+.+++|+|+++.|++++.++ .|++||+.+++... +
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l-- 218 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-V-- 218 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-E--
T ss_pred CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-e--
Confidence 5566665554 799999997 555778888999999999999999999999875 99999999876532 2
Q ss_pred EEeecccccCeEEEEEeCCCCEEE-EEeCCCc--EEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC-CC--cE
Q psy4869 1165 FISLYGHKLPVLSLDMSYDSTLIA-TGSGDRT--VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK-DG--RV 1238 (2435)
Q Consensus 1165 ~~~~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~--V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~-Dg--~I 1238 (2435)
..+...+.+++|+|+|++|+ +++.|+. |++||+.+++. ..+..|...+.++.|+|+++.|+.++. ++ .|
T Consensus 219 ----~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 219 ----ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp ----ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred ----ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 35778899999999999887 6666554 99999998875 567788899999999999999998885 44 45
Q ss_pred EEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEE
Q psy4869 1239 KQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1239 ~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.+||+...+... + ......+.
T Consensus 294 ~~~d~~~~~~~~-l----------------------------------------------------------~~~~~~~~ 314 (415)
T 2hqs_A 294 YKVNINGGAPQR-I----------------------------------------------------------TWEGSQNQ 314 (415)
T ss_dssp EEEETTSSCCEE-C----------------------------------------------------------CCSSSEEE
T ss_pred EEEECCCCCEEE-E----------------------------------------------------------ecCCCccc
Confidence 555655432100 0 01124567
Q ss_pred EEEecCCcceeEEeecC---CeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEeCCCCceEE
Q psy4869 1319 CARVSPDSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDR---TVKVWGLDYGDCHK 1392 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~d---G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg---~V~iwdl~~gk~~~ 1392 (2435)
+++|+|||++|++++.+ +.|++||+++++.. .+..+. .+..++|+|||++|++++.|+ .|++||+. ++...
T Consensus 315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~ 391 (415)
T 2hqs_A 315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA 391 (415)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEE
T ss_pred CeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEE
Confidence 89999999999998864 58999999988774 455554 899999999999999998887 79999997 55567
Q ss_pred EecccccceEEEEEeeCCC
Q psy4869 1393 SLLAHEDSVTGVTFVPKTH 1411 (2435)
Q Consensus 1393 ~~~~h~~~V~~laf~P~~~ 1411 (2435)
.+..|.+.|.+++|+|...
T Consensus 392 ~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 392 RLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECCCSSSEEEEEEECCCCC
T ss_pred EeeCCCCCCcCCccccccc
Confidence 8899999999999999753
No 176
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=2.7e-20 Score=261.92 Aligned_cols=325 Identities=11% Similarity=0.068 Sum_probs=246.5
Q ss_pred CCCEEEEEEcCCCCEEEEEEC-CC-----cEEEEEcCCCeEEEEEecCCcC------------------------EEEEE
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLL-DT-----TVKIFFLDTFKFFISLYGHKLP------------------------VLSLD 1089 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~-dg-----~V~i~d~~~~~~~~~l~~h~~~------------------------V~sl~ 1089 (2435)
...+.+++|+|||++|++++. ++ .|.+||+.+++....+..+... |.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999999999999998 77 8999999999887777655433 78999
Q ss_pred EcCCCCEEEEEECCCcEEEEEccCCc--eeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe
Q psy4869 1090 MSYDSTLIATGSGDRTVKVWGLDYGD--CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS 1167 (2435)
Q Consensus 1090 ~spdg~~L~Sgs~Dg~I~vWd~~t~~--~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~ 1167 (2435)
|+|||++|++++. +.|++||+.++. ....+..|...+..++|+|||++|+.++ ++.|++||+.+++.....
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~----- 188 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT----- 188 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC-----
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec-----
Confidence 9999999999887 899999998873 4455667888899999999999999887 469999999876543321
Q ss_pred eccccc----------------CeEEEEEeCCCCEEEEEeCCC---------------------------------cEEE
Q psy4869 1168 LYGHKL----------------PVLSLDMSYDSTLIATGSGDR---------------------------------TVKV 1198 (2435)
Q Consensus 1168 ~~~h~~----------------~V~~l~~s~dg~~l~sgs~Dg---------------------------------~V~i 1198 (2435)
..+.. .+..++|+|||++|++++.|+ .|++
T Consensus 189 -~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 189 -ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp -CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred -cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 12222 147799999999999987765 7899
Q ss_pred EEccC-CceeeEee--ccCCCEEEEEEeeCCCEEEEEEC-----CCcEEEEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1199 WGLDY-GDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSK-----DGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1199 wd~~t-~~~~~~~~--~h~~~V~~i~~spd~~~lvsgs~-----Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
||+.+ ++...... .|...+..++| ||++.|+.++. +..|.+||+.+.+....+....
T Consensus 268 ~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-------------- 332 (741)
T 2ecf_A 268 ISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-------------- 332 (741)
T ss_dssp ECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--------------
T ss_pred EECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--------------
Confidence 99998 77554332 47788999999 99999998764 4567788877654322211000
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcc-cceEE
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD-TFKFF 1349 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~-~~k~i 1349 (2435)
+ ..-..+..++|+|||+++++++.+|.++||.++ .++ .
T Consensus 333 -~---------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~ 371 (741)
T 2ecf_A 333 -P---------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A 371 (741)
T ss_dssp -S---------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E
T ss_pred -C---------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e
Confidence 0 000023357899999988899999988888776 455 7
Q ss_pred EEecCCCCCeEEE-EEecCCCEEEE-EeCCC--cEEEEeCCC-CceEEEecccccceEEEEEeeCCCEEEEEeCC----C
Q psy4869 1350 ISLYGHKLPVLSL-DMSYDSTLIAT-GSGDR--TVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD----G 1420 (2435)
Q Consensus 1350 ~~~~~h~~~V~~l-a~spdg~~L~s-Gg~Dg--~V~iwdl~~-gk~~~~~~~h~~~V~~laf~P~~~~laSgg~D----g 1420 (2435)
..+..|...|..+ +|+|||+.|+. ++.++ .+++|++.. ++....+.. ...+..++|+|++.+|+....+ +
T Consensus 372 ~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~ 450 (741)
T 2ecf_A 372 AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPP 450 (741)
T ss_dssp EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEE
T ss_pred eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCC
Confidence 7788888888887 59999997754 55555 899999874 665666655 5678999999999988865433 4
Q ss_pred cEEEEECCC
Q psy4869 1421 RVKQWDADN 1429 (2435)
Q Consensus 1421 ~V~lWd~~~ 1429 (2435)
.+.+|+...
T Consensus 451 ~~~l~~~~~ 459 (741)
T 2ecf_A 451 QIELFRANG 459 (741)
T ss_dssp EEEEEETTS
T ss_pred eEEEEEcCC
Confidence 688888764
No 177
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=3.9e-20 Score=260.31 Aligned_cols=353 Identities=13% Similarity=0.120 Sum_probs=250.9
Q ss_pred ceEEEeecCCCCeEEEEEc-CC-----eEEEEECCCCCeEEEecCCCCC------------------------EEEEEEc
Q psy4869 77 EVCQLSPNHDSSQLAVAYT-NG-----SLKTFSLDTTDVISTFTGHKSA------------------------ITVIQYD 126 (2435)
Q Consensus 77 ~v~~~~~~~d~~~lav~~~-~G-----~i~i~d~~~~~~~~~l~gH~~~------------------------V~~l~f~ 126 (2435)
.+..++|+|||++||.++. +| .|++||+.+++....+.+|... |.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678999999999999988 88 8999999999988877766433 8899999
Q ss_pred CCCCEEEEEeCCCCEEEEEccCCe--eEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccc
Q psy4869 127 PLGHRLATGSKDTDIVLWDVVAEC--GLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLT 204 (2435)
Q Consensus 127 p~g~~laSgs~Dg~I~iWd~~~~~--~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~ 204 (2435)
|||++|++++. +.|.+||+.++. ....+..|...+.+++|+| ++..|+.++ ++.|++||+.+|+.......+..
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~ 193 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQLTADGST 193 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence 99999999987 999999998873 4556788989999999986 456677776 56899999999887655544433
Q ss_pred e----------------EEEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 205 E----------------VWGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 205 ~----------------V~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
. +..++|+|||++|++++.|+ .+..|+... ..++. ....
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~--------------------~~p~~--~~~~-- 249 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYE--------------------VYADR--TDVI-- 249 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEE--------------------ECSSC--EEEE--
T ss_pred ceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCC--------------------CCCCc--ccce--
Confidence 2 46799999999999887654 333443100 00000 0000
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCC--eEEEEeCcc-ceeeeeeccc
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKND--EVTVYDREK-NYKVQKVQKD 344 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~v~i~d~~~-~~~~~~~~~~ 344 (2435)
..... . ....+. .+.+||... ......
T Consensus 250 ----------------------~~~~~--------------~----------~g~~~~~~~l~~~d~~~~~~~~~~---- 279 (741)
T 2ecf_A 250 ----------------------EQRYP--------------A----------AGDANVQVKLGVISPAEQAQTQWI---- 279 (741)
T ss_dssp ----------------------EEECC--------------B----------TTSCCCEEEEEEECSSTTCCCEEE----
T ss_pred ----------------------EeecC--------------C----------CCCCCCeeEEEEEECCCCCceEEe----
Confidence 00000 0 000112 345556543 211100
Q ss_pred ccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC-----CCeEEEEecCCceeeEEEeeCCCC----CeeEEEEcc
Q psy4869 345 VGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY-----DRQIFIWSVYGECENIGVMSGHTG----AVMDLKFST 415 (2435)
Q Consensus 345 ~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~-----Dg~I~iwd~~~~~~~~~~l~~h~~----~V~~l~~s~ 415 (2435)
....+|...+..++| |||++|+.++. +..|++||+.++... ..+..|.. .+..++|+|
T Consensus 280 -----------~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~sp 346 (741)
T 2ecf_A 280 -----------DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR-VLAHETSPTWVPLHNSLRFLD 346 (741)
T ss_dssp -----------CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEE-EEEEEECSSCCCCCSCCEECT
T ss_pred -----------cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceE-EEEEcCCCCcCCcCCceEECC
Confidence 001257888999999 99999997764 578999998765432 23333332 457899999
Q ss_pred CCCEEEEEeCCCeEEEEECC-CCceEEEEeccCcccccc-CcccCCCeEEEEEeCCC--eEEEEeCCC-CcceEeecCcc
Q psy4869 416 DGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGHSTFVNSC-DPVRRGQLLIASGSDDC--TVKVWDPRK-KNQAVSMNNTY 490 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~-tg~~v~~l~~h~~~v~sv-~~~~~~~~llasgs~Dg--~I~vwD~~~-~~~~~~~~~~~ 490 (2435)
||+++++++.|+.++||.++ .++ ...+..|...+..+ .|++++..++++++.++ .+++|++.. +.....+....
T Consensus 347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~ 425 (741)
T 2ecf_A 347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP 425 (741)
T ss_dssp TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC
T ss_pred CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC
Confidence 99988889999988888765 455 77788887777776 59999988888888877 899999864 45455665567
Q ss_pred cEEEEEECCCCCEEEEEecC----CeEEEEECCCC
Q psy4869 491 QVTSVAFNDTAECVLTGGID----NDIKMWDLRTN 521 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~d----g~V~lwD~~s~ 521 (2435)
.+..++|+|+|++|+....+ +.+++||...+
T Consensus 426 ~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 426 GMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp SEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 78899999999998876544 56888887543
No 178
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.84 E-value=4.4e-19 Score=223.67 Aligned_cols=276 Identities=10% Similarity=0.136 Sum_probs=204.4
Q ss_pred EEEEEeCCCeEEEEecCC-ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-CeEEEEECC--CCc--eEEEEeccCcc
Q psy4869 376 YIASSGYDRQIFIWSVYG-ECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-QTLAVWDLE--KGQ--RIKKMKGHSTF 449 (2435)
Q Consensus 376 ~Lasgs~Dg~I~iwd~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g~I~vwd~~--tg~--~v~~l~~h~~~ 449 (2435)
++++++.|+.|++||+.. +.........|...+..++|+|++++|++++.+ +.|++|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 344557899999999852 222222334577889999999999999998886 899999997 555 344555444 7
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCC---CCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCC-CcEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPR---KKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRT-NSVV 524 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~---~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s-~~~v 524 (2435)
+..++|+|++..+++++..++.|.+||+. .............+.+++|+|+|+++++++ .++.|++||+.+ ++..
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 78899999998888888889999999994 344445555566789999999999988887 899999999987 6543
Q ss_pred E----EEec-CCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcc--cccccCeEEEEEcCCCCEE
Q psy4869 525 Q----KLRG-HSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQ--HNFEKNLLRCAWSVSGLYV 596 (2435)
Q Consensus 525 ~----~l~~-h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~--~~~~~~i~~v~~spdg~~L 596 (2435)
. .+.. ....+.+++|+|+|++|+.++ .++.|++||+................. ......+..++|+|+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 2 2333 345789999999999877655 799999999963211122233332111 1112356789999999988
Q ss_pred E-EecCCCeEEEEECC--C--CcEEEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 597 T-AGSADKCVYIWDTT--T--RRIAYKLPGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 597 a-sgs~Dg~V~iwd~~--s--~~~~~~l~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
+ ++..++.|.+||+. + .+.+..+..+.. +.+++|+|++++|++++ .|+.|.+|+++
T Consensus 246 ~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 246 YACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 7 45579999999998 3 355566655555 89999999999888887 68999999775
No 179
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.84 E-value=4.5e-19 Score=247.95 Aligned_cols=385 Identities=11% Similarity=0.018 Sum_probs=250.1
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeE-EEecCCC-----------------CCEEEEEEcCCCCEEEEEeCCCCE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVI-STFTGHK-----------------SAITVIQYDPLGHRLATGSKDTDI 141 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~-~~l~gH~-----------------~~V~~l~f~p~g~~laSgs~Dg~I 141 (2435)
.+.|. +..++.+..+| | +||+.+++.+ ..+..|. ..|.+++|+|+ .+++.+ .|+.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 36677 66777777888 8 9999999874 4444443 56999999999 555555 45999
Q ss_pred EEEEccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccC-----Cccccccccccce-----------
Q psy4869 142 VLWDVVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADT-----GDCFKTMAAHLTE----------- 205 (2435)
Q Consensus 142 ~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~t-----g~~~~~~~~h~~~----------- 205 (2435)
++||+.+++. ..+..|.+.+.+++|+| ++..|+. +.|+.|++||+.+ |+.......+...
T Consensus 104 ~~~d~~~~~~-~~l~~~~~~~~~~~~Sp--dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 104 VGFDMLARKV-TYLFDTNEETASLDFSP--VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEETTTTEE-EEEECCTTCCTTCEECT--TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEECCCCce-EEccCCcccccCCcCCC--CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 9999988765 44566788899999986 4556776 4789999999999 8776554444333
Q ss_pred ---EEEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCC
Q psy4869 206 ---VWGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTG 281 (2435)
Q Consensus 206 ---V~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g 281 (2435)
+.+++|+|||++|++++.|. .+..|.+.... ...+. ....
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~--------------------~~~~~-----~~~~----------- 223 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYH--------------------PLEAE-----SKPL----------- 223 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECC--------------------SSSCE-----EEEE-----------
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccC--------------------CCCCc-----eEEe-----------
Confidence 47899999999999887432 22222211000 00000 0000
Q ss_pred ccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEeccc
Q psy4869 282 KKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGH 361 (2435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH 361 (2435)
.. .. .........+.+||......... ....+|
T Consensus 224 ----------~y--------------~~--------~g~~~~~~~l~~~d~~~~~~~~~---------------~~~~~~ 256 (706)
T 2z3z_A 224 ----------YY--------------PM--------AGTPSHHVTVGIYHLATGKTVYL---------------QTGEPK 256 (706)
T ss_dssp ----------CC--------------CB--------TTSCCCEEEEEEEETTTTEEEEC---------------CCCSCT
T ss_pred ----------eC--------------CC--------CCCCCCeeEEEEEECCCCceEee---------------ccCCCC
Confidence 00 00 00011234567787765422111 011257
Q ss_pred CCcEEEEEECCCCCEEEEEeCCC-----eEEEEecCCc-eeeEEEeeCCCC---CeeEEEEcc--CCCEEEEEeCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDR-----QIFIWSVYGE-CENIGVMSGHTG---AVMDLKFST--DGCHIFTCSTDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg-----~I~iwd~~~~-~~~~~~l~~h~~---~V~~l~~s~--dg~~L~s~s~Dg~I~ 430 (2435)
...+.+++|+|||++|++++.++ .|++||+.++ .........+.. .+..++|+| ||++|+++..|+.++
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~ 336 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNH 336 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCE
T ss_pred ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccE
Confidence 78899999999999999988775 9999999876 222211122222 357889999 999999999999999
Q ss_pred EEECC-CCceEEEEeccCccccc-cCcccCCCeEEEEEeCCC----eEEEEeCCCCcceEeecCcccEEEEEECCCCCEE
Q psy4869 431 VWDLE-KGQRIKKMKGHSTFVNS-CDPVRRGQLLIASGSDDC----TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 431 vwd~~-tg~~v~~l~~h~~~v~s-v~~~~~~~~llasgs~Dg----~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l 504 (2435)
||+++ +++.+..+..|...+.. +.|+|++..+++++..++ .|..||+.++. ...+.+...+.+++|+|+|+++
T Consensus 337 l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l 415 (706)
T 2z3z_A 337 LYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAI 415 (706)
T ss_dssp EEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEE
T ss_pred EEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEE
Confidence 99886 67778888888777766 789999988888888776 77778887765 4455567779999999999998
Q ss_pred EEEecC----CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcC
Q psy4869 505 LTGGID----NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIR 561 (2435)
Q Consensus 505 ~sgs~d----g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~ 561 (2435)
+....+ +.|++||+.+++ ...+ .+...+....|.+. ..+..-+.|| .+..|-..
T Consensus 416 ~~~~~~~~~p~~i~l~d~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~ 475 (706)
T 2z3z_A 416 IDIFQSPTVPRKVTVTNIGKGS-HTLL-EAKNPDTGYAMPEI-RTGTIMAADGQTPLYYKLTM 475 (706)
T ss_dssp EEEEECSSCSCEEEEEESSSCE-EEEE-ECC------CCCCE-EEEEEECTTSSSEEEEEEEC
T ss_pred EEEecCCCCCcEEEEEECCCCe-Eeec-cccchhhhcCCCCc-EEEEEEcCCCCEEEEEEEEe
Confidence 877554 569999999887 3333 34444444444332 2222334455 55555443
No 180
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=1.3e-19 Score=254.08 Aligned_cols=341 Identities=11% Similarity=0.050 Sum_probs=241.8
Q ss_pred eEEEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCC---CEEEEEEcCCCCEEEEEeCC---------CCEEEEE
Q psy4869 78 VCQLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKS---AITVIQYDPLGHRLATGSKD---------TDIVLWD 145 (2435)
Q Consensus 78 v~~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~---~V~~l~f~p~g~~laSgs~D---------g~I~iWd 145 (2435)
...++|+|||++++. +.||.|++||+.+++....+.+|.. .|.+++|+|||++||+++.| +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 346899999997766 6899999999999999888888876 49999999999999999875 6788999
Q ss_pred ccCCeeEEEE---ecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCccccccccccceE----------------
Q psy4869 146 VVAECGLHRL---SGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEV---------------- 206 (2435)
Q Consensus 146 ~~~~~~~~~l---~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V---------------- 206 (2435)
+.+++. ..+ .+|...|..++|+|+ ++.|+.++. +.|++||+.+|+..+....+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPd--G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPK--GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSS--TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred CCCCce-EeccCCccccccccccEECCC--CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 988765 333 355556999999864 456777765 799999999998766555443322
Q ss_pred --EEEEEEeCCCeEEEeeCCC-cEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCcc
Q psy4869 207 --WGVCVMREDSYLISGSNDA-ELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKK 283 (2435)
Q Consensus 207 --~~l~~~p~~~~l~s~s~Dg-~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~ 283 (2435)
.+++|+|||++|++++.|+ .+++|++.....
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~---------------------------------------------- 207 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG---------------------------------------------- 207 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS----------------------------------------------
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCC----------------------------------------------
Confidence 7899999999999887653 455554431100
Q ss_pred ceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCC
Q psy4869 284 KWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGG 363 (2435)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~ 363 (2435)
.+..
T Consensus 208 ----------------------------------------------------------------------------~~~~ 211 (723)
T 1xfd_A 208 ----------------------------------------------------------------------------SIYP 211 (723)
T ss_dssp ----------------------------------------------------------------------------SSSC
T ss_pred ----------------------------------------------------------------------------cCCC
Confidence 0001
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeC------CCCCeeEEEEccCCCEEEEEeC----CCeEEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSG------HTGAVMDLKFSTDGCHIFTCST----DQTLAVWD 433 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~----Dg~I~vwd 433 (2435)
.+..+.|.++|.. ..+..|++||+.+... ...+.. |...+..++|+|||++|++... +..|++||
T Consensus 212 ~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 212 TVKPYHYPKAGSE----NPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp CCEEEECCBTTSC----CCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred cceeccCCCCCCC----CCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 1234455555542 2345789999876532 123333 3678999999999998877653 35799999
Q ss_pred CCCCceEEEEecc-Ccccc----ccCcccCCCeEEEE-EeCCC------eEEEEe-CCCCcc--eEeec-CcccEEE-EE
Q psy4869 434 LEKGQRIKKMKGH-STFVN----SCDPVRRGQLLIAS-GSDDC------TVKVWD-PRKKNQ--AVSMN-NTYQVTS-VA 496 (2435)
Q Consensus 434 ~~tg~~v~~l~~h-~~~v~----sv~~~~~~~~llas-gs~Dg------~I~vwD-~~~~~~--~~~~~-~~~~v~s-v~ 496 (2435)
+.+++....+..+ ...+. .+.|+|++..+++. +..++ .|.+|| ...+.. ...+. ....+.. ++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 9999877766543 34443 78899999877765 66777 577777 344441 33333 3344554 69
Q ss_pred ECCCCCEEEEEecC---CeEEEEECCCC--cEEEEEec---CCCCEEEEEEcCCCCEEEEEE
Q psy4869 497 FNDTAECVLTGGID---NDIKMWDLRTN--SVVQKLRG---HSDTVTGLSLSPDGSYILSNA 550 (2435)
Q Consensus 497 ~sp~g~~l~sgs~d---g~V~lwD~~s~--~~v~~l~~---h~~~V~~i~~spdg~~las~s 550 (2435)
|+|+|+.|+..+.+ +.++||++... .....+.. |...+..++|+|||++|+...
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 99999999876555 78999988643 23334443 677789999999999988643
No 181
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.82 E-value=3.7e-18 Score=214.66 Aligned_cols=276 Identities=11% Similarity=0.143 Sum_probs=204.2
Q ss_pred EECCCCCE-EEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEECCCCce-EEEEec
Q psy4869 369 KYHPDGQY-IASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDLEKGQR-IKKMKG 445 (2435)
Q Consensus 369 ~fspdg~~-Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~~tg~~-v~~l~~ 445 (2435)
.|.+++++ +++++.++.|++||..++.. ...+..+...+ .++|+||++++++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEI-LNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCE-EEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccce-eeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 45555554 77788899999999876543 33444555666 9999999997777766 88999999999987 777777
Q ss_pred cCccccccCcccCCCeEEEEEeCC-C--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCCe-EEEEECCC
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDD-C--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDND-IKMWDLRT 520 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~D-g--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg~-V~lwD~~s 520 (2435)
+.....++.|+|++..++ ++..+ + .|.+||+.+++.+..+.....+.+++|+|+|++++++ ..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 776666589999997776 44444 3 9999999999888888777778999999999866655 45588 99999886
Q ss_pred CcEE----EEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCE
Q psy4869 521 NSVV----QKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLY 595 (2435)
Q Consensus 521 ~~~v----~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~ 595 (2435)
...+ .....+...+.+++|+|||++++.++ .++.|++||+..... .+.+..+... ..+..++|+|||++
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~~-----~~~~~~~~spdg~~ 234 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGTN-----NLPGTIVVSRDGST 234 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEECS-----SCCCCEEECTTSSE
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccCC-----CCCceEEECCCCCE
Confidence 4333 12223455689999999999766555 689999999974321 1115555433 25567999999997
Q ss_pred EEEec-CCCeEEEEECCCCcE--EEEecCC----CCC---eeEEEEcCCCCEEEEEEC-CCcEEEecCC
Q psy4869 596 VTAGS-ADKCVYIWDTTTRRI--AYKLPGH----NGS---VNDVQFHPKEPIIMSASS-DKTIYLGESP 653 (2435)
Q Consensus 596 Lasgs-~Dg~V~iwd~~s~~~--~~~l~~h----~~~---V~~l~fspd~~~Lasgs~-Dg~I~vWd~~ 653 (2435)
|+.++ .++.|.+||..++++ +..+..+ ... ++.++|+|++++|++++. ++.|++|++.
T Consensus 235 l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 235 VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 76654 578899999999887 4444332 222 356999999998876665 5699999997
No 182
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=2e-18 Score=241.48 Aligned_cols=318 Identities=12% Similarity=0.075 Sum_probs=230.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEcCCCeEE-EEEecCC-----------------cCEEEEEEcCCCCEEEEEECCCcE
Q psy4869 1045 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFF-ISLYGHK-----------------LPVLSLDMSYDSTLIATGSGDRTV 1106 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~-~~l~~h~-----------------~~V~sl~~spdg~~L~Sgs~Dg~I 1106 (2435)
.+.|. |..++.+..++ | +||+.+++.+ ..+..|. ..|.+++|+|| +.++.+ .++.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 35677 66677777677 8 9999988873 4444333 46999999999 666655 45999
Q ss_pred EEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-----cceeEEEEEEEeecccccC-------
Q psy4869 1107 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN-----FERIVTLHFFISLYGHKLP------- 1174 (2435)
Q Consensus 1107 ~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~-----~~~~~~~~~~~~~~~h~~~------- 1174 (2435)
++||+.+++.. .+..+...+..++|+|+++.|+.+ .++.|++||+.+ ++..... ..+...
T Consensus 104 ~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~------~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 104 VGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVT------IDGTETLVYGQAV 175 (706)
T ss_dssp EEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESC------SCCBTTEEESSCC
T ss_pred EEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEec------cCCCCCeEcccch
Confidence 99999888654 444566778899999999999885 679999999987 6543322 122222
Q ss_pred -------eEEEEEeCCCCEEEEEe---------------------------------CCCcEEEEEccCCceeeEe--ec
Q psy4869 1175 -------VLSLDMSYDSTLIATGS---------------------------------GDRTVKVWGLDYGDCHKSL--LA 1212 (2435)
Q Consensus 1175 -------V~~l~~s~dg~~l~sgs---------------------------------~Dg~V~iwd~~t~~~~~~~--~~ 1212 (2435)
+.++.|+|||++|++++ .+..|++||+.+++..... ..
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 57899999999999987 4467999999988754433 25
Q ss_pred cCCCEEEEEEeeCCCEEEEEECCC-----cEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccc
Q psy4869 1213 HEDSVTGVTFVPKTHYFFTTSKDG-----RVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNR 1287 (2435)
Q Consensus 1213 h~~~V~~i~~spd~~~lvsgs~Dg-----~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~ 1287 (2435)
|...+.++.|+||++.|++++.++ .|.+||+.+.+....+.. ....
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--------------~~~~--------------- 306 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV--------------ETDK--------------- 306 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE--------------EECS---------------
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE--------------ccCC---------------
Confidence 677899999999999999988776 788888877533221110 0000
Q ss_pred cccccccccccccceeeeeecccccccccEEEEEecC--CcceeEEeecCCeEEEEEcc-cceEEEEecCCCCCeEE-EE
Q psy4869 1288 EADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP--DSKLLAVSLLDTTVKIFFLD-TFKFFISLYGHKLPVLS-LD 1363 (2435)
Q Consensus 1288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~sp--dg~~lavgs~dG~V~v~d~~-~~k~i~~~~~h~~~V~~-la 1363 (2435)
.....+..++|+| ||++++++..+|.++||.++ +++.+..+..|...+.. ++
T Consensus 307 ------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~ 362 (706)
T 2z3z_A 307 ------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAG 362 (706)
T ss_dssp ------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEE
T ss_pred ------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeE
Confidence 0001124578999 99999999999999999887 67777888888888887 79
Q ss_pred EecCCCEEEEEeC-CC----cEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCC----CcEEEEECCCce
Q psy4869 1364 MSYDSTLIATGSG-DR----TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD----GRVKQWDADNFE 1431 (2435)
Q Consensus 1364 ~spdg~~L~sGg~-Dg----~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~D----g~V~lWd~~~~~ 1431 (2435)
|+|||+.|+.++. ++ .|+.||+.+++. ..+ .|...+.+++|+|++.+|+....+ +.|.+||+.+.+
T Consensus 363 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 363 FDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 9999998766554 44 677788887763 333 366779999999999988865443 569999998766
No 183
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.81 E-value=1e-17 Score=212.42 Aligned_cols=272 Identities=9% Similarity=0.074 Sum_probs=217.4
Q ss_pred cCCcEEEEEECCCCCEEEEEeC-------CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGY-------DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVW 432 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~-------Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vw 432 (2435)
....+..++|+|+|++|++++. ++.|.+||..+... ...+. ....+..++|+++|++++.+ ..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIH-NDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEE-ESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEe-cCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 3456789999999999888874 56899999876533 22332 23457889999999966655 457999999
Q ss_pred ECCCCceEEEEeccCcc---------ccccCcccCCCeEEEEE-eCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCC
Q psy4869 433 DLEKGQRIKKMKGHSTF---------VNSCDPVRRGQLLIASG-SDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTA 501 (2435)
Q Consensus 433 d~~tg~~v~~l~~h~~~---------v~sv~~~~~~~~llasg-s~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g 501 (2435)
|..+++.+..+..+... +..+.|+|++..++++. +.++.|.+||+.+++....+. ....+.+++|+|+|
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg 196 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence 99999998888765432 56789999998777776 468999999999998888876 55568899999999
Q ss_pred CEEEEEecCCeEEEEECCCCcEEEEEec----CCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCc
Q psy4869 502 ECVLTGGIDNDIKMWDLRTNSVVQKLRG----HSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGH 576 (2435)
Q Consensus 502 ~~l~sgs~dg~V~lwD~~s~~~v~~l~~----h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h 576 (2435)
+++++++.++.|.+||..+++.+..+.. +...+.+++|+|+|++++.++. ++.|.+||+.. .+.+..+...
T Consensus 197 ~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~----~~~~~~~~~~ 272 (353)
T 3vgz_A 197 KRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN----GNILAKVAAP 272 (353)
T ss_dssp TEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT----CCEEEEEECS
T ss_pred CEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC----CcEEEEEEcC
Confidence 9999999999999999999999888764 5667899999999998877665 59999999974 4555555532
Q ss_pred ccccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 577 QHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 577 ~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
. ...+.|+|+|++|+.++ .++.|.+||..+++.+..+..+ ..+.+++|+|++++|+.+..++
T Consensus 273 ~------~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 E------SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp S------CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred C------CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 2 14589999999665554 7899999999999998887654 4689999999999877777664
No 184
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=6.7e-19 Score=246.92 Aligned_cols=329 Identities=14% Similarity=0.068 Sum_probs=230.3
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc---CEEEEEEcCCCCEEEEEECC---------CcEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL---PVLSLDMSYDSTLIATGSGD---------RTVKV 1108 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~---~V~sl~~spdg~~L~Sgs~D---------g~I~v 1108 (2435)
..+.+++|+|||+++++ +.||.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +.|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 44677899999997776 6799999999999988888877765 49999999999999999875 77889
Q ss_pred EEccCCceeEEEe---ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeeccccc------------
Q psy4869 1109 WGLDYGDCHKSLL---AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKL------------ 1173 (2435)
Q Consensus 1109 Wd~~t~~~~~~l~---~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~------------ 1173 (2435)
||+.+++. ..+. .|...+..++|+|||+.|+.++. +.|++||+.+++...... .+..
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~------~~~~~~~~~g~~~~v~ 167 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVS------TGKEGVIYNGLSDWLY 167 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEEC------CCBTTTEEEEECCHHH
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEec------CCCCCceECcccceeE
Confidence 99998876 3343 34445889999999999998886 799999998876544321 2222
Q ss_pred ------CeEEEEEeCCCCEEEEEeCCC----------------------------------cEEEEEccCCceeeEeecc
Q psy4869 1174 ------PVLSLDMSYDSTLIATGSGDR----------------------------------TVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1174 ------~V~~l~~s~dg~~l~sgs~Dg----------------------------------~V~iwd~~t~~~~~~~~~h 1213 (2435)
.+.+++|+|||++|+.++.|+ .|++||+.+++....+..+
T Consensus 168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~ 247 (723)
T 1xfd_A 168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP 247 (723)
T ss_dssp HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence 237899999999999887543 7999999988865566544
Q ss_pred ------CCCEEEEEEeeCCCEEEEEECC----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccc
Q psy4869 1214 ------EDSVTGVTFVPKTHYFFTTSKD----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1283 (2435)
Q Consensus 1214 ------~~~V~~i~~spd~~~lvsgs~D----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~ 1283 (2435)
...+..+.|+||++.|++.... ..|.+||+.+.+....+... .++
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---------------~~~---------- 302 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE---------------SEA---------- 302 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE---------------CSS----------
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec---------------cCC----------
Confidence 6689999999999988766532 45777777665432211100 000
Q ss_pred cccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe--ecCC------eEEEEE-cccce--EEEEe
Q psy4869 1284 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS--LLDT------TVKIFF-LDTFK--FFISL 1352 (2435)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg--s~dG------~V~v~d-~~~~k--~i~~~ 1352 (2435)
........++|+|||+.|+.. ..+| .|.+|| ...++ ....+
T Consensus 303 ----------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l 354 (723)
T 1xfd_A 303 ----------------------------WLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI 354 (723)
T ss_dssp ----------------------------CCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred ----------------------------EEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence 000001256899999988864 4566 466666 33443 13444
Q ss_pred cCCCCCeEE-EEEecCCCEEEEEeCC---CcEEEEeCCCCc--eEEEecc---cccceEEEEEeeCCCEEEEEe-CCC--
Q psy4869 1353 YGHKLPVLS-LDMSYDSTLIATGSGD---RTVKVWGLDYGD--CHKSLLA---HEDSVTGVTFVPKTHYFFTTS-KDG-- 1420 (2435)
Q Consensus 1353 ~~h~~~V~~-la~spdg~~L~sGg~D---g~V~iwdl~~gk--~~~~~~~---h~~~V~~laf~P~~~~laSgg-~Dg-- 1420 (2435)
..+...+.. ++|+|||++|+..+.+ +.+++|++.... ....+.. |...+..++|+|++.+|+... .++
T Consensus 355 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p 434 (723)
T 1xfd_A 355 TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVP 434 (723)
T ss_dssp CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSC
T ss_pred ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCC
Confidence 444445554 6999999999766555 789999986432 2333433 677899999999998887543 333
Q ss_pred cEEEEECCCce
Q psy4869 1421 RVKQWDADNFE 1431 (2435)
Q Consensus 1421 ~V~lWd~~~~~ 1431 (2435)
...+++....+
T Consensus 435 ~~~~~~~~~~~ 445 (723)
T 1xfd_A 435 MVTVHNTTDKK 445 (723)
T ss_dssp CEEEEETTTCC
T ss_pred eEEEEECCCCC
Confidence 23445544433
No 185
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.81 E-value=3.1e-18 Score=210.31 Aligned_cols=256 Identities=17% Similarity=0.157 Sum_probs=196.8
Q ss_pred EEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC-CceEEEEecc-CccccccCcc
Q psy4869 379 SSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK-GQRIKKMKGH-STFVNSCDPV 456 (2435)
Q Consensus 379 sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t-g~~v~~l~~h-~~~v~sv~~~ 456 (2435)
.++.|+.|++||+.+... ..+..|...|.+++|+||+++|++++ ++.|++||+.+ ++......+| ...+.++.|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM--RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEE--EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCce--eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 346889999999977543 34556889999999999999999987 78999999999 8877776666 3678899999
Q ss_pred cCCCeEEEEEe-CCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEE-EEecCCeEEEEECCC-CcEEEEEecCC
Q psy4869 457 RRGQLLIASGS-DDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLRT-NSVVQKLRGHS 531 (2435)
Q Consensus 457 ~~~~~llasgs-~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~-sgs~dg~V~lwD~~s-~~~v~~l~~h~ 531 (2435)
|++..+++... .++ .|..||+..+. ...+.....+..++|+|++++|+ ++..++.+.||+++. ......+..|.
T Consensus 94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 94 PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 99866554442 334 44455555544 34444445689999999999887 778899999988532 23446677788
Q ss_pred CCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC--------
Q psy4869 532 DTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-------- 602 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-------- 602 (2435)
..+.+++|+|+|++|+.++ .|+.++||+++. ....+..+..+. ..+..+.|+|+|++|+.++.+
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV---DGSSVERITDSA----YGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEET---TSSCEEECCCCS----EEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECC---CCCCcEEEecCC----cccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 8999999999999888766 599999999863 233445555443 357789999999999988765
Q ss_pred ---CeEEEEECCCCcE--EEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 603 ---KCVYIWDTTTRRI--AYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 603 ---g~V~iwd~~s~~~--~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
+.|++||+.+++. +..+.+|...|.+++|+|+++.|++++.|.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999998865 445558899999999999999998887664
No 186
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.80 E-value=2e-17 Score=208.45 Aligned_cols=269 Identities=10% Similarity=0.124 Sum_probs=194.3
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCC-CeEEEEecC--Cc-eeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-CCeEEEEEC
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYD-RQIFIWSVY--GE-CENIGVMSGHTGAVMDLKFSTDGCHIFTCST-DQTLAVWDL 434 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~D-g~I~iwd~~--~~-~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~vwd~ 434 (2435)
.|...+.+++|+|+|++|++++.+ +.|++|++. .+ ...+..+..+. .+..++|+|++++|++++. ++.|.+||+
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 466788899999999999998887 999999987 32 23334444444 8899999999998877765 889999999
Q ss_pred C---CCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCC-CcceE------eecCcccEEEEEECCCCCEE
Q psy4869 435 E---KGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRK-KNQAV------SMNNTYQVTSVAFNDTAECV 504 (2435)
Q Consensus 435 ~---tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~-~~~~~------~~~~~~~v~sv~~sp~g~~l 504 (2435)
. .++.+..+..+ ..+.++.|+|++..+++++..++.|.+||+.. ++... .......+..++|+|+|+++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 4 44455555544 35788999999987777776899999999987 54321 22344578899999999987
Q ss_pred EEEe-cCCeEEEEECCC--CcE--EEEEe----cC--CCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEE
Q psy4869 505 LTGG-IDNDIKMWDLRT--NSV--VQKLR----GH--SDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 505 ~sgs-~dg~V~lwD~~s--~~~--v~~l~----~h--~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
++++ .++.|.+||++. ++. ...+. ++ ...+.+++|+|||++|+.+. .|+.|++||+.......+.+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 6665 789999999953 433 33332 11 23677899999999887544 7999999999732212234444
Q ss_pred EeCcccccccCeEEEEEcCCCCEEEEec-CCCeEEEE--ECCCCc--EEEEecCCCCCeeEEEEcCCCC
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIW--DTTTRR--IAYKLPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iw--d~~s~~--~~~~l~~h~~~V~~l~fspd~~ 636 (2435)
+..+. .+..++|+|+|++|++++ .++.|.+| |..+++ .+..+.. .....+++|.|+.+
T Consensus 273 ~~~~~-----~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 273 QPTET-----QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp EECSS-----SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred ecCCC-----ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEcccC
Confidence 44332 366799999999888887 68999999 555664 3444433 34577788877653
No 187
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.80 E-value=2.7e-17 Score=208.42 Aligned_cols=279 Identities=11% Similarity=0.054 Sum_probs=222.2
Q ss_pred CceEEEEecCCCcEEEEec--------CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccC
Q psy4869 886 SEVRALAFSSDNLALVSAC--------ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGA 956 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~--------~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~s 956 (2435)
..+..++|+++|++|+++. ++.|.+||..+++.+..+..+..+.+++|+|++++|+++ ..++.|.+||+++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 4688999999999988877 458999999999999888877778889999999977665 4579999999998
Q ss_pred CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 957 g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
++++..+..+... .+.
T Consensus 121 ~~~~~~~~~~~~~------~~~---------------------------------------------------------- 136 (353)
T 3vgz_A 121 GEVKGRLVLDDRK------RTE---------------------------------------------------------- 136 (353)
T ss_dssp CCEEEEEESCCCC------CCS----------------------------------------------------------
T ss_pred CeeEEEEecCCCc------ccc----------------------------------------------------------
Confidence 8776544322100 000
Q ss_pred cccCCCEEEEEEcCCCCEEEEEE--CCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCC
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSL--LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1114 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~--~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~ 1114 (2435)
......+.+++|+|+|++++++. .++.|.+||..+++.+..+..+...+.+++|+|++++|++++.++.|.+||..++
T Consensus 137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~ 216 (353)
T 3vgz_A 137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN 216 (353)
T ss_dssp SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT
T ss_pred ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 00112356789999999888886 3688999999999998888866667889999999999999999999999999999
Q ss_pred ceeEEEec----cCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEE
Q psy4869 1115 DCHKSLLA----HEDSVTGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1115 ~~~~~l~~----h~~~V~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 1189 (2435)
+.+..+.. +...+..++|+|+++.+++++. ++.|.+||..+++....+. ... ...++|+++++++++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~------~~~--~~~~~~s~dg~~l~v 288 (353)
T 3vgz_A 217 KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA------APE--SLAVLFNPARNEAYV 288 (353)
T ss_dssp EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE------CSS--CCCEEEETTTTEEEE
T ss_pred eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE------cCC--CceEEECCCCCEEEE
Confidence 98887764 5557889999999997777665 4899999999887766553 111 256899999997766
Q ss_pred Ee-CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1190 GS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1190 gs-~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
+. .++.|.+||..+++.+..+..+ ..+.+++|+|+++.|+++..++.
T Consensus 289 ~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 289 THRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECCC
T ss_pred EECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEcccc
Confidence 65 6899999999999988777543 46899999999998887776543
No 188
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.80 E-value=2.3e-17 Score=207.44 Aligned_cols=277 Identities=13% Similarity=0.083 Sum_probs=202.9
Q ss_pred EEcCCCCEE-EEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCce-eEEEecc
Q psy4869 1047 RVSPDSKLL-AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDC-HKSLLAH 1123 (2435)
Q Consensus 1047 ~~spdg~~L-avg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~-~~~l~~h 1123 (2435)
.|.+++.++ ++...++.|.+||..+++.+..+..+...+ .++|+|++++|++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 466666664 455567999999999999988888766667 9999999997776666 89999999999987 7777767
Q ss_pred CCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEE-eCCCc-EEE
Q psy4869 1124 EDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRT-VKV 1198 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~~~l~s~s~Dg---~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg-s~Dg~-V~i 1198 (2435)
.....+++|+|++++++++..++ .|++||+.+++....+. ......+++|+|+|++++++ ..++. |++
T Consensus 83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~ 155 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP-------IPYDAVGIAISPNGNGLILIDRSSANTVRR 155 (331)
T ss_dssp SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE-------CCTTEEEEEECTTSSCEEEEEETTTTEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE-------CCCCccceEECCCCCEEEEEecCCCceEEE
Confidence 66666699999999998555553 89999999887655442 34456899999999866555 55588 999
Q ss_pred EEccCCcee----eEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCce---EEEEeeCCcccccCceEEEEEE
Q psy4869 1199 WGLDYGDCH----KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFER---IVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1199 wd~~t~~~~----~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~---v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
|++.....+ .....+......+.|+|+++.+++++ .++.|.+||+.+.+. +..+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----------------- 218 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----------------- 218 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-----------------
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-----------------
Confidence 998764432 12223445689999999999776665 588899999876554 21111
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee-cCCeEEEEEcccceE-
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKF- 1348 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs-~dG~V~v~d~~~~k~- 1348 (2435)
....+..++|+|||++++++. .++.|.+||.++++.
T Consensus 219 ------------------------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~ 256 (331)
T 3u4y_A 219 ------------------------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLS 256 (331)
T ss_dssp ------------------------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEE
T ss_pred ------------------------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCcee
Confidence 112345689999999777655 578899999998876
Q ss_pred -EEEecCC----CC---CeEEEEEecCCCEEEEEe-CCCcEEEEeCCCCce
Q psy4869 1349 -FISLYGH----KL---PVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1349 -i~~~~~h----~~---~V~~la~spdg~~L~sGg-~Dg~V~iwdl~~gk~ 1390 (2435)
+..+..+ .. ....++|+|||++|++++ .++.|++||+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 257 FVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred eecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 4444332 22 235689999999886655 567999999987653
No 189
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=1.8e-17 Score=208.26 Aligned_cols=278 Identities=11% Similarity=0.048 Sum_probs=209.4
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEeccCC--CEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEEEeeccc
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAHED--SVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFFISLYGH 1171 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~--~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h 1171 (2435)
++|++++.++.|.+||+.+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+++....+.... ...+
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLST-PEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCB-TTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC-cccc
Confidence 4789999999999999999988887763322 478999999998665 55567899999999887665543100 0001
Q ss_pred ccCeEEEEEeCCCCEEEEEe------------CCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEE
Q psy4869 1172 KLPVLSLDMSYDSTLIATGS------------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK 1239 (2435)
Q Consensus 1172 ~~~V~~l~~s~dg~~l~sgs------------~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~ 1239 (2435)
...+..++|++++++++++. .++.|++||+.+++.+..+.. ...+.++.|+|+++.|+++ ++.|.
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~ 157 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLH 157 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEE
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEE
Confidence 23567899999999999886 579999999999887776654 4567889999999988887 78999
Q ss_pred EEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEE
Q psy4869 1240 QWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319 (2435)
Q Consensus 1240 vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1319 (2435)
+||+.+.+.+..+....... .
T Consensus 158 ~~d~~~~~~~~~~~~~~~~~-----------------------------------------------------------~ 178 (337)
T 1pby_B 158 VMDPEAGTLVEDKPIQSWEA-----------------------------------------------------------E 178 (337)
T ss_dssp EEETTTTEEEEEECSTTTTT-----------------------------------------------------------T
T ss_pred EEECCCCcEeeeeeccccCC-----------------------------------------------------------C
Confidence 99998876554443211000 0
Q ss_pred EEecCCcceeEEeecC------------------------CeEEEEEcccceEE-EEecCCCCCeEEEEEecCCCEEEEE
Q psy4869 1320 ARVSPDSKLLAVSLLD------------------------TTVKIFFLDTFKFF-ISLYGHKLPVLSLDMSYDSTLIATG 1374 (2435)
Q Consensus 1320 ia~spdg~~lavgs~d------------------------G~V~v~d~~~~k~i-~~~~~h~~~V~~la~spdg~~L~sG 1374 (2435)
+.|+|||+.+++.... ..|.+||..+++.. ..+..+...+..++|+|||++|+++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 1234444433332211 15789999887764 3344566778899999999999998
Q ss_pred eCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEee
Q psy4869 1375 SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1375 g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.|+.|.+||+.+.+.+..++.
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred --CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 799999999999988776544 4578999999999999889999999999999998888763
No 190
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.78 E-value=1.9e-17 Score=208.08 Aligned_cols=298 Identities=10% Similarity=0.031 Sum_probs=215.6
Q ss_pred CEEEEEECCCcEEEEEcCCCeEEEEEecCCc--CEEEEEEcCCCCEEE-EEECCCcEEEEEccCCceeEEEec-c----C
Q psy4869 1053 KLLAVSLLDTTVKIFFLDTFKFFISLYGHKL--PVLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDCHKSLLA-H----E 1124 (2435)
Q Consensus 1053 ~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~--~V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~~~~l~~-h----~ 1124 (2435)
.+|+++..++.|.+||..+++.+..+..... .+..++|+|+++.++ ++..++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4788888999999999999998888763322 478899999997665 555678999999999998877653 2 2
Q ss_pred CCEEEEEEccCCCEEEEEe------------CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1125 DSVTGVTFVPKTHYFFTTS------------KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1125 ~~V~~v~fsp~~~~l~s~s------------~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
..+..++|+|+++.++++. .++.|.+||+.+++....+. ....+.+++|+|++++|+++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------~~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-------APRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-------CCSSCCCEEECTTSSCEEEE--
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe-------CCCCcceeEECCCCCEEEEe--
Confidence 2567899999999888886 57999999998876655442 24457789999999988888
Q ss_pred CCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEE--EEECCCCceEEEEeeCCcccccCceEEEEEE
Q psy4869 1193 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVK--QWDADNFERIVTLHFNPNVYLPLQIQVVTGG 1270 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~--vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~ 1270 (2435)
++.|++||+.+++.+..+..+... ..+.|+|++..++..+.++... +|.... .......+..
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~------- 216 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTAR--------KDIDPADPTA------- 216 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEB--------TTSCTTSGGG-------
T ss_pred CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccc--------cccccccccc-------
Confidence 688999999999887776544311 1237889888777665444332 121100 0000000000
Q ss_pred CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEE
Q psy4869 1271 GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI 1350 (2435)
Q Consensus 1271 ~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~ 1350 (2435)
....+.+||+...+.. . .........+..++|+|||++++++ ++.|++||+++++.+.
T Consensus 217 ~~~~v~~~d~~~~~~~-~-------------------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~ 274 (337)
T 1pby_B 217 YRTGLLTMDLETGEMA-M-------------------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIK 274 (337)
T ss_dssp EEEEEEEEETTTCCEE-E-------------------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEE
T ss_pred cccceEEEeCCCCCce-E-------------------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcc
Confidence 0115777877633221 0 0001123467789999999999988 7999999999999888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccc
Q psy4869 1351 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1398 (2435)
Q Consensus 1351 ~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~ 1398 (2435)
.+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+..++.+.
T Consensus 275 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 275 RVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 77754 457889999999999999999999999999999988776553
No 191
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.77 E-value=9.3e-17 Score=203.58 Aligned_cols=271 Identities=10% Similarity=0.145 Sum_probs=192.3
Q ss_pred CCCeEEEEecCC--ceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC---CCeEEEEECCCCc--eEEEEeccCccccccC
Q psy4869 382 YDRQIFIWSVYG--ECENIGVMSGHTGAVMDLKFSTDGCHIFTCST---DQTLAVWDLEKGQ--RIKKMKGHSTFVNSCD 454 (2435)
Q Consensus 382 ~Dg~I~iwd~~~--~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~tg~--~v~~l~~h~~~v~sv~ 454 (2435)
.++.|.+|++.. +.........+...+..++|+|||+ |++++. ++.|++||+.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 345678887653 3222223344557788899999998 666554 6899999997765 4455556777888999
Q ss_pred cccCCCeEEEEEeCCCeEEEEeCCCC-c--ceEeecC----------cccEEEEEECCCCCEEEEEecCCeEEEEECC-C
Q psy4869 455 PVRRGQLLIASGSDDCTVKVWDPRKK-N--QAVSMNN----------TYQVTSVAFNDTAECVLTGGIDNDIKMWDLR-T 520 (2435)
Q Consensus 455 ~~~~~~~llasgs~Dg~I~vwD~~~~-~--~~~~~~~----------~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~-s 520 (2435)
|+|++..++++...++.|.+||+... . .+..... ...+.+++|+|+|+++++...++.|++||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 99999877777768999999999632 2 2222221 1248899999999966666678899999998 5
Q ss_pred CcEE--EEEecC-CCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCCCCceEEEEeCcccc--cccCeEEEEEcCCCC
Q psy4869 521 NSVV--QKLRGH-SDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVPGERCVKVMSGHQHN--FEKNLLRCAWSVSGL 594 (2435)
Q Consensus 521 ~~~v--~~l~~h-~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~--~~~~i~~v~~spdg~ 594 (2435)
++.. ..+..+ ...+..++|+|||++|++ +..++.|.+|++.........+..+...... ....+..++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 5443 223333 336889999999997766 4578999999987421111223333322111 113478899999999
Q ss_pred EEE-EecCCCeEEEEECC---CCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC-CcEEEecCC
Q psy4869 595 YVT-AGSADKCVYIWDTT---TRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD-KTIYLGESP 653 (2435)
Q Consensus 595 ~La-sgs~Dg~V~iwd~~---s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D-g~I~vWd~~ 653 (2435)
+|+ ++..++.|.+||+. ..+.+..+..|...+..++|+||+++|++++.+ +.|.+|+++
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 884 55678999999987 335666777777889999999999988888865 899999775
No 192
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.77 E-value=2.7e-17 Score=201.88 Aligned_cols=255 Identities=15% Similarity=0.115 Sum_probs=195.9
Q ss_pred EcCCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccC-CeeEEEEecCC-CcEEEEEEeecC
Q psy4869 94 YTNGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVA-ECGLHRLSGHK-GVITDIRFMSQP 171 (2435)
Q Consensus 94 ~~~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~-~~~~~~l~gH~-~~V~~v~~~~~~ 171 (2435)
+.++.|++||+.+++.. .+..|...|.+++|+|+|++||+++ ++.|++||+.+ ++....+.+|. ..|.+++|+|
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-- 94 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-- 94 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT--
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC--
Confidence 35788999999998765 5566999999999999999999987 78999999998 77766666664 7899999985
Q ss_pred CCcEEEEEe--CCCcEEEEec--cCCccccccccccceEEEEEEEeCCCeEE-EeeCCCcEEEEEcCCCCCccccchhhh
Q psy4869 172 GHHFVVSSA--KDTFVKIWDA--DTGDCFKTMAAHLTEVWGVCVMREDSYLI-SGSNDAELKVWNVRDRSDIDTEDKDKL 246 (2435)
Q Consensus 172 ~~~~l~S~s--~Dg~I~iWd~--~tg~~~~~~~~h~~~V~~l~~~p~~~~l~-s~s~Dg~v~vwdl~~~~~~~~~~~~~~ 246 (2435)
++.+|+.++ .|+.++||.+ .+++ ...+..+. .+..++|+|++++|+ +++.|+.+++|+++....
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~--------- 163 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG--------- 163 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC---------
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCC---------
Confidence 456778887 4456666665 4444 44444443 488899999999877 788999999998652100
Q ss_pred hhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCe
Q psy4869 247 SEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDE 326 (2435)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (2435)
T Consensus 164 -------------------------------------------------------------------------------- 163 (297)
T 2ojh_A 164 -------------------------------------------------------------------------------- 163 (297)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEe-CCCeEEEEecCCceeeEEEeeCCC
Q psy4869 327 VTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSG-YDRQIFIWSVYGECENIGVMSGHT 405 (2435)
Q Consensus 327 v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs-~Dg~I~iwd~~~~~~~~~~l~~h~ 405 (2435)
....+..|...+.+++|+|+|++|+.++ .++.+++|++.........+..|.
T Consensus 164 ---------------------------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 164 ---------------------------VETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp ---------------------------CEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred ---------------------------cceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 0001224556788999999999888766 589999999863334456677788
Q ss_pred CCeeEEEEccCCCEEEEEeCC-----------CeEEEEECCCCce--EEEEeccCccccccCcccCCCeEEEEEeCCC
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTD-----------QTLAVWDLEKGQR--IKKMKGHSTFVNSCDPVRRGQLLIASGSDDC 470 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~D-----------g~I~vwd~~tg~~--v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg 470 (2435)
..+..++|+|++++|+.++.+ +.|++||+.+++. +..+.+|...+..+.|+|++..+++++..++
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 899999999999999988765 5699999988865 4445578888999999999987776666554
No 193
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.75 E-value=1.7e-17 Score=226.33 Aligned_cols=274 Identities=11% Similarity=0.100 Sum_probs=201.6
Q ss_pred cCCcEEEEEECCCCCEEEEEeC-CCeEEEEecCCceeeEEEeeCCC-CCeeEEEEccCCCEEEEEeC---CCeEEEEECC
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGY-DRQIFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGCHIFTCST---DQTLAVWDLE 435 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~-Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s~s~---Dg~I~vwd~~ 435 (2435)
+..+|++++|+|||++||.++. ||.++||++.++. ...+..|. ..+..++|+|| +.+++++. +...++|.+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 3567999999999999999887 9999999986543 23444554 68999999999 77777765 4445565543
Q ss_pred C---CceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC--
Q psy4869 436 K---GQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-- 510 (2435)
Q Consensus 436 t---g~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-- 510 (2435)
. +... .+..+. ......|+++++.++++.+.++.+.+||+.+++......+.. .+++|+|||++|+.++.+
T Consensus 97 ~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred ccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 2 3322 332222 233557888887655555555555699998887655444333 789999999999988777
Q ss_pred --CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCCCCCceEEEEeCccccccc----
Q psy4869 511 --NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIRPYVPGERCVKVMSGHQHNFEK---- 582 (2435)
Q Consensus 511 --g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~~~~~~~~~v~~~~~h~~~~~~---- 582 (2435)
+.|++||+.+++.. .+..|.+.+..++|+|||++|+++..|+ .|++||+.. ++.. .+.++......
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~----~~~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD----GSVE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT----CCEE-ECCCSCSHHHHHCCS
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC----CcEE-EccCCCcChhhhhhc
Confidence 78999999988764 6788889999999999999999888898 899999873 3444 45444321110
Q ss_pred CeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCc---EEEecCC
Q psy4869 583 NLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT---IYLGESP 653 (2435)
Q Consensus 583 ~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~---I~vWd~~ 653 (2435)
.....+|+|||.++++++.|+.+++|++ ++.+. .+.+.|.+++|+ +++++++++.+.. +++|+..
T Consensus 247 ~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 1122339999999999999999999999 76554 345779999999 9999999888854 7777764
No 194
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=227.85 Aligned_cols=324 Identities=11% Similarity=0.117 Sum_probs=224.9
Q ss_pred EEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEEEecCCC---cEEEEEEeecCCCcEEEEEeC---------CCcEEEEe
Q psy4869 122 VIQYDPLGHRLATGSKDTDIVLWDVVAECGLHRLSGHKG---VITDIRFMSQPGHHFVVSSAK---------DTFVKIWD 189 (2435)
Q Consensus 122 ~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~l~gH~~---~V~~v~~~~~~~~~~l~S~s~---------Dg~I~iWd 189 (2435)
.++|+|+|.+++++ .|+.|++||+.+++....+.+|.. .|.+++|+| ++++|+.++. |+.|++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSP--DRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECT--TSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECC--CCCeEEEEecCceeEEeecceEEEEEE
Confidence 67899999666655 699999999999887777776654 499999985 4566777765 79999999
Q ss_pred ccCCccc--cccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeE
Q psy4869 190 ADTGDCF--KTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKI 267 (2435)
Q Consensus 190 ~~tg~~~--~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 267 (2435)
+++|+.+ ..+ ...+..++|+|||++|+.+. |+.|++||+.+++.... ..
T Consensus 97 ~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l---------------~~---------- 147 (719)
T 1z68_A 97 LSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI---------------TF---------- 147 (719)
T ss_dssp TTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC---------------CC----------
T ss_pred CCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE---------------ec----------
Confidence 9999873 233 24588899999999999885 78999999876532100 00
Q ss_pred EEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccC
Q psy4869 268 EVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGR 347 (2435)
Q Consensus 268 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 347 (2435)
.+..
T Consensus 148 ------------~~~~---------------------------------------------------------------- 151 (719)
T 1z68_A 148 ------------NGRE---------------------------------------------------------------- 151 (719)
T ss_dssp ------------CCBT----------------------------------------------------------------
T ss_pred ------------CCCc----------------------------------------------------------------
Confidence 0000
Q ss_pred ccccccceeEecccCC---------cEEEEEECCCCCEEEEEeCCC----------------------------------
Q psy4869 348 TSNLFAPIMLLEGHGG---------EIFCSKYHPDGQYIASSGYDR---------------------------------- 384 (2435)
Q Consensus 348 ~~~~~~p~~~l~gH~~---------~V~~l~fspdg~~Lasgs~Dg---------------------------------- 384 (2435)
..++.||.. ...+++|+|||++||+++.|.
T Consensus 152 -------~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~ 224 (719)
T 1z68_A 152 -------NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVV 224 (719)
T ss_dssp -------TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEE
T ss_pred -------CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCee
Confidence 000112211 124689999999999988652
Q ss_pred eEEEEecCCcee----eE---EEeeCCCCCeeEEEEccCCCEEEEEeCC----CeEEEEE----CCCCceEEEE----ec
Q psy4869 385 QIFIWSVYGECE----NI---GVMSGHTGAVMDLKFSTDGCHIFTCSTD----QTLAVWD----LEKGQRIKKM----KG 445 (2435)
Q Consensus 385 ~I~iwd~~~~~~----~~---~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g~I~vwd----~~tg~~v~~l----~~ 445 (2435)
.|++||+.+... .+ ..+.+|...+..++|+||++.+++.... ..|.+|| +.+++....+ .+
T Consensus 225 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~ 304 (719)
T 1z68_A 225 RIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES 304 (719)
T ss_dssp EEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC
T ss_pred EEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc
Confidence 788999876542 11 1134688899999999998766664432 2488999 8777665544 46
Q ss_pred cCcccc-----ccCcccCCCeEEE-EEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC-----Ce
Q psy4869 446 HSTFVN-----SCDPVRRGQLLIA-SGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID-----ND 512 (2435)
Q Consensus 446 h~~~v~-----sv~~~~~~~~lla-sgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d-----g~ 512 (2435)
|...+. .+.|+|++..+++ +...++ .|.+||+..++......+...+..+.+. +++.|+..+.+ +.
T Consensus 305 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~ 383 (719)
T 1z68_A 305 RTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGR 383 (719)
T ss_dssp SSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTC
T ss_pred CCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCce
Confidence 777776 7889999987655 444555 5777788776643333445567777777 88877776654 77
Q ss_pred EEEEECCC--Cc-EEEEEe----cCCCCEEEEEEcCCCCEEEE-EECC--CcEEEEEcC
Q psy4869 513 IKMWDLRT--NS-VVQKLR----GHSDTVTGLSLSPDGSYILS-NAMD--NTVRIWDIR 561 (2435)
Q Consensus 513 V~lwD~~s--~~-~v~~l~----~h~~~V~~i~~spdg~~las-~s~D--g~I~lWdl~ 561 (2435)
+++|.+.. +. ....+. +|...+..+.|+|||++++. ++.+ ..+.+||+.
T Consensus 384 ~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~ 442 (719)
T 1z68_A 384 RNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGR 442 (719)
T ss_dssp BEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSS
T ss_pred EEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECC
Confidence 88887653 42 233443 26677889999999988774 4433 568889876
No 195
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.72 E-value=2.8e-15 Score=189.89 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=195.0
Q ss_pred EEEEEEC----CCcEEEEEcC--CCeEEE-EEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEEccCCc--eeEEEe
Q psy4869 1054 LLAVSLL----DTTVKIFFLD--TFKFFI-SLYGHKLPVLSLDMSYDSTLIATGSG---DRTVKVWGLDYGD--CHKSLL 1121 (2435)
Q Consensus 1054 ~Lavg~~----dg~V~i~d~~--~~~~~~-~l~~h~~~V~sl~~spdg~~L~Sgs~---Dg~I~vWd~~t~~--~~~~l~ 1121 (2435)
.+++|+. ++.|.+|+++ +++... ....+...+..++|+|||+ |++++. ++.|.+|++..++ .+..+.
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~ 82 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV 82 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeee
Confidence 4556643 4567777665 455433 2334556778899999999 555544 6899999997765 344445
Q ss_pred ccCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeec------ccccCeEEEEEeCCCCEEEEEeCCC
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLY------GHKLPVLSLDMSYDSTLIATGSGDR 1194 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~------~h~~~V~~l~~s~dg~~l~sgs~Dg 1194 (2435)
.+...+..++|+|++++|++++ .++.|.+|++........+....... .....+.+++|+|+|+++++...++
T Consensus 83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~ 162 (347)
T 3hfq_A 83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSD 162 (347)
T ss_dssp EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTT
T ss_pred cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCC
Confidence 5777889999999999888887 67899999996433333332111100 0123588999999999666666788
Q ss_pred cEEEEEcc-CCceee--Eeecc-CCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCc-eEEEEeeCCcccccCceEEEE
Q psy4869 1195 TVKVWGLD-YGDCHK--SLLAH-EDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFE-RIVTLHFNPNVYLPLQIQVVT 1268 (2435)
Q Consensus 1195 ~V~iwd~~-t~~~~~--~~~~h-~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~-~v~~~~~~~~~~~~~~~~lv~ 1268 (2435)
.|++||+. .++... .+..+ ......++|+|+++++++++ .++.|.+||+.... .+....
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~--------------- 227 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLG--------------- 227 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEE---------------
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEee---------------
Confidence 99999998 554322 22222 33678899999999766654 67888998875411 110000
Q ss_pred EECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEE-eecCCeEEEEEcc---
Q psy4869 1269 GGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAV-SLLDTTVKIFFLD--- 1344 (2435)
Q Consensus 1269 g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lav-gs~dG~V~v~d~~--- 1344 (2435)
..... .........+..++|+|||++|++ ...++.|.+|+++
T Consensus 228 --------~~~~~--------------------------~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 228 --------IVKTI--------------------------PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp --------EEESS--------------------------CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred --------eeeec--------------------------CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 00000 000011245788999999998755 5568999999997
Q ss_pred cceEEEEecCCCCCeEEEEEecCCCEEEEEeCC-CcEEEE--eCCCCceEE
Q psy4869 1345 TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD-RTVKVW--GLDYGDCHK 1392 (2435)
Q Consensus 1345 ~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~D-g~V~iw--dl~~gk~~~ 1392 (2435)
..+.+..+..+...+..++|+|||++|++++.+ +.|.+| |.++|++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 335666777766778999999999998888765 899999 556777654
No 196
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=9.4e-16 Score=193.75 Aligned_cols=262 Identities=10% Similarity=0.034 Sum_probs=192.3
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCC-CCeeEEEEccCCCEEEE-EeCCCeEEEEECCCCceEEEEec
Q psy4869 368 SKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHT-GAVMDLKFSTDGCHIFT-CSTDQTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 368 l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~L~s-~s~Dg~I~vwd~~tg~~v~~l~~ 445 (2435)
+++++++.++++++.++.|++||..+... ...+..+. ..+..++|+||+++++. ...++.|.+||+.+++.+..+..
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTV-YKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE-EEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcE-EEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 46778889999999999999999876543 33343332 36889999999987655 45689999999999988877764
Q ss_pred c------CccccccCcccCCCeEEEEEeC-----------CCeEEEEeCCCCcc---eEeecCcccEEEEEECCCCCEEE
Q psy4869 446 H------STFVNSCDPVRRGQLLIASGSD-----------DCTVKVWDPRKKNQ---AVSMNNTYQVTSVAFNDTAECVL 505 (2435)
Q Consensus 446 h------~~~v~sv~~~~~~~~llasgs~-----------Dg~I~vwD~~~~~~---~~~~~~~~~v~sv~~sp~g~~l~ 505 (2435)
+ ...+..+.|+|++..++++... ++.|.+||+.+++. +....+...+.+++|+|+|+ ++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence 3 2337788999998776665543 58999999987443 34445555788999999999 66
Q ss_pred EEecCCeEEEEECCCCcEEEEEecCC-C-----------------------CEEEEEEcCCCCEE-----------EEEE
Q psy4869 506 TGGIDNDIKMWDLRTNSVVQKLRGHS-D-----------------------TVTGLSLSPDGSYI-----------LSNA 550 (2435)
Q Consensus 506 sgs~dg~V~lwD~~s~~~v~~l~~h~-~-----------------------~V~~i~~spdg~~l-----------as~s 550 (2435)
+++ +.|++||..+++.+..+..+. + ...++++++++... ....
T Consensus 163 ~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred Ecc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 554 449999999999888775432 0 34557777655221 1222
Q ss_pred CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 551 MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 551 ~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
.++.+++|++.. ....+..++|+| +|++|+++ ++.|.+||+.+++.+..+.. ...+.++
T Consensus 241 ~~~~~~~~~~~~-----------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~ 300 (349)
T 1jmx_B 241 KTGKTHTQEFAD-----------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCV 300 (349)
T ss_dssp TTCCEEEEEEEE-----------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEE
T ss_pred cCCcEEeccccc-----------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-CCCccce
Confidence 344455544421 123567899999 99999988 89999999999998887753 3457899
Q ss_pred EEcCCCCEEEEEECCCcEEEecCC
Q psy4869 630 QFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 630 ~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+|++++|++++.++.|++||+.
T Consensus 301 ~~s~dg~~l~~~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 301 AFDKKGDKLYLGGTFNDLAVFNPD 324 (349)
T ss_dssp EECSSSSCEEEESBSSEEEEEETT
T ss_pred EECCCCCEEEEecCCCeEEEEecc
Confidence 999999988888899999999986
No 197
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=5.6e-15 Score=188.36 Aligned_cols=300 Identities=11% Similarity=0.045 Sum_probs=201.8
Q ss_pred CCEEEEEEC----CCcEEEEEcC--CCeEEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEEccC--Cce--e
Q psy4869 1052 SKLLAVSLL----DTTVKIFFLD--TFKFFISLYGHKLPVLSLDMSYDSTLIATGSGD----RTVKVWGLDY--GDC--H 1117 (2435)
Q Consensus 1052 g~~Lavg~~----dg~V~i~d~~--~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~D----g~I~vWd~~t--~~~--~ 1117 (2435)
..++++|+. ++.|.+|.++ +++.......+...+..++|+||+++|++++.+ +.|.+|+++. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 345667743 4679998764 454433222266778889999999999999886 7999999865 432 3
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeec--------ccccCeEEEEEeCCCCEEE
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLY--------GHKLPVLSLDMSYDSTLIA 1188 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~--------~h~~~V~~l~~s~dg~~l~ 1188 (2435)
.....+......+++ ++++|++++ .++.|.+|++.....+..+....... .+...+.+++|+|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 333445566778888 778777766 57899999997544332221111111 1233468899999999776
Q ss_pred EEe-CCCcEEEEEccCCce------e-------eEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEe
Q psy4869 1189 TGS-GDRTVKVWGLDYGDC------H-------KSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLH 1253 (2435)
Q Consensus 1189 sgs-~Dg~V~iwd~~t~~~------~-------~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~ 1253 (2435)
+++ .++.|++|++..... + .....+.....+++|+|+++++++++ .++.|.+||+...+......
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 665 478999999875431 1 11223455688999999999888887 68899999886432110000
Q ss_pred eCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEee
Q psy4869 1254 FNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL 1333 (2435)
Q Consensus 1254 ~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs 1333 (2435)
. .. ..........++|+|||++|+++.
T Consensus 251 ~------------------------~~-----------------------------~~~~~~~~~~i~~spdg~~l~v~~ 277 (361)
T 3scy_A 251 V------------------------AA-----------------------------DTVNAQGSGDIHLSPDGKYLYASN 277 (361)
T ss_dssp E------------------------ES-----------------------------CSSCCCCEEEEEECTTSSEEEEEE
T ss_pred E------------------------ec-----------------------------CCCCCCCcccEEECCCCCEEEEEC
Confidence 0 00 000012346899999999987766
Q ss_pred cC--CeEEEEEcc--cce--EEEEecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--eCCCCceEEEec-ccccceEE
Q psy4869 1334 LD--TTVKIFFLD--TFK--FFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVW--GLDYGDCHKSLL-AHEDSVTG 1403 (2435)
Q Consensus 1334 ~d--G~V~v~d~~--~~k--~i~~~~~h~~~V~~la~spdg~~L~sGg-~Dg~V~iw--dl~~gk~~~~~~-~h~~~V~~ 1403 (2435)
.+ +.|.+|+++ +++ .+..+.. ...+..++|+|||++|++++ .++.|.+| |..+|++..... .+...++|
T Consensus 278 ~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~ 356 (361)
T 3scy_A 278 RLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVC 356 (361)
T ss_dssp CSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEE
T ss_pred CCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeE
Confidence 54 899999996 344 4555554 45678999999999988887 67889995 555787765442 34557889
Q ss_pred EEEe
Q psy4869 1404 VTFV 1407 (2435)
Q Consensus 1404 laf~ 1407 (2435)
|+|.
T Consensus 357 v~~~ 360 (361)
T 3scy_A 357 LKFV 360 (361)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9885
No 198
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.72 E-value=2.1e-15 Score=192.33 Aligned_cols=265 Identities=13% Similarity=0.137 Sum_probs=190.4
Q ss_pred cCCcEEEEEECCCCCEEEEEeCC----CeEEEEecCCc---eeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYD----RQIFIWSVYGE---CENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVW 432 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~D----g~I~iwd~~~~---~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vw 432 (2435)
|......++|+|+|++|++++.+ +.|.+|++... ...+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66677789999999999999886 79999988642 2334444556677888888 788888776 57899999
Q ss_pred ECCCCceEEEE------ec--------cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcc--------------eE
Q psy4869 433 DLEKGQRIKKM------KG--------HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQ--------------AV 484 (2435)
Q Consensus 433 d~~tg~~v~~l------~~--------h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~--------------~~ 484 (2435)
++.....+..+ .+ +...+.++.|+|++..++++...++.|.+|++..... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 99754322111 11 1122356899999988888888899999998875431 22
Q ss_pred eecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcE--EEEEe---cCCCCEEEEEEcCCCCEEEEEECC--CcEE
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSV--VQKLR---GHSDTVTGLSLSPDGSYILSNAMD--NTVR 556 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~--v~~l~---~h~~~V~~i~~spdg~~las~s~D--g~I~ 556 (2435)
.......+..++|+|+|+++++++ .++.|.+||+.+++. +..+. .+.....+++|+|||++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 234556788999999999888877 689999999987754 33332 344567899999999999776654 8999
Q ss_pred EEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec-CCCeEEEE--ECCCCcEEEEec-CCCCCeeEEEEc
Q psy4869 557 IWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS-ADKCVYIW--DTTTRRIAYKLP-GHNGSVNDVQFH 632 (2435)
Q Consensus 557 lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iw--d~~s~~~~~~l~-~h~~~V~~l~fs 632 (2435)
+|++.......+.+..+.. ...+..++|+|||++|++++ .++.|.+| |.+++++..... .+...+.||.|.
T Consensus 286 v~~~~~~~g~~~~~~~~~~-----g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-----GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-----SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEEcCCCCcEEEeeEecC-----CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9999632111223333332 13567899999999888887 67899995 556777765432 255678999886
No 199
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=223.69 Aligned_cols=335 Identities=11% Similarity=0.081 Sum_probs=225.0
Q ss_pred EEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCC----eEEEEEEecCCCEEEEEeC---------CCeEEEEEccC
Q psy4869 890 ALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS----YALSVCFVPGDRHVLVGTK---------DGRLLIVDIGA 956 (2435)
Q Consensus 890 ~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~----~v~~vafspdg~~Lavg~~---------dg~V~vwd~~s 956 (2435)
.++|+|||++++.+.++.|++||+.+++....+.... .+.+++|||||++|+.+.. ++.|++||+.+
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 5899999998888888999999999998877766432 2778999999999998765 78999999999
Q ss_pred CceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 957 GEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 957 g~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
|+.+..... ...+..++|+||+ ..|+.+. |+.|++|++..+.......... ...+..-.....
T Consensus 100 g~~~~~~~l-~~~~~~~~~SPDG----------~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-----~~~v~~g~~~~v 162 (719)
T 1z68_A 100 GEFVRGNEL-PRPIQYLCWSPVG----------SKLAYVY-QNNIYLKQRPGDPPFQITFNGR-----ENKIFNGIPDWV 162 (719)
T ss_dssp TEECCSSCC-CSSBCCEEECSST----------TCEEEEE-TTEEEEESSTTSCCEECCCCCB-----TTTEEESSCCHH
T ss_pred Cccccceec-CcccccceECCCC----------CEEEEEE-CCeEEEEeCCCCCcEEEecCCC-----cCCeEcccccce
Confidence 987321111 2468889999997 4677764 7899999986543211000000 000000000000
Q ss_pred --cccCCCEEEEEEcCCCCEEEEEECCC----------------------------------cEEEEEcCCCeEE---E-
Q psy4869 1037 --LKLEEQVLCARVSPDSKLLAVSLLDT----------------------------------TVKIFFLDTFKFF---I- 1076 (2435)
Q Consensus 1037 --~~~~~~v~~l~~spdg~~Lavg~~dg----------------------------------~V~i~d~~~~~~~---~- 1076 (2435)
-+......+++|||||++|+.+..|. .|++||+.+++.. .
T Consensus 163 ~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~ 242 (719)
T 1z68_A 163 YEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV 242 (719)
T ss_dssp HHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC
T ss_pred eeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc
Confidence 00012235899999999999987542 7889999887642 1
Q ss_pred ----EEecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEE----ccCCceeEEE----eccCCCEE-----EEEEccC
Q psy4869 1077 ----SLYGHKLPVLSLDMSYDSTLIATGSGDR----TVKVWG----LDYGDCHKSL----LAHEDSVT-----GVTFVPK 1135 (2435)
Q Consensus 1077 ----~l~~h~~~V~sl~~spdg~~L~Sgs~Dg----~I~vWd----~~t~~~~~~l----~~h~~~V~-----~v~fsp~ 1135 (2435)
.+.+|...+.+++|+||++++++....+ .|.+|| ..++++...+ ..|...+. .+.|+|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 243 PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1336888899999999988777654332 488899 7777665544 35666666 8899999
Q ss_pred CCEEEE--EeCCC--cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC-----CcEEEEEccC--C
Q psy4869 1136 THYFFT--TSKDG--RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDY--G 1204 (2435)
Q Consensus 1136 ~~~l~s--~s~Dg--~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D-----g~V~iwd~~t--~ 1204 (2435)
++.|+. ...++ .|.+||+..++. .. +..+...+..+.+. +++.|+..+.+ +.+++|.+.. +
T Consensus 323 g~~l~~~~~~~~g~~~l~~~~~~~~~~-~~------lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 323 AISYYKIFSDKDGYKHIHYIKDTVENA-IQ------ITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp SSCEEEEEECTTSCEEEEEESSCSTTC-EE------CSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred CCeEEEEEEccCCceEEEEEECCCCce-Ee------cccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 986544 44555 566777766542 22 22455567777777 78777776654 7888998764 3
Q ss_pred c-eeeEee----ccCCCEEEEEEeeCCCEEEEEE-CC--CcEEEEECCCCceE
Q psy4869 1205 D-CHKSLL----AHEDSVTGVTFVPKTHYFFTTS-KD--GRVKQWDADNFERI 1249 (2435)
Q Consensus 1205 ~-~~~~~~----~h~~~V~~i~~spd~~~lvsgs-~D--g~I~vwD~~~~~~v 1249 (2435)
. ....+. +|...+..+.|+|+++.++... .+ ..+.+||+.+.+.+
T Consensus 395 ~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 395 PPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 2 123332 2667888999999888777543 22 45778887665543
No 200
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.71 E-value=2.6e-16 Score=214.68 Aligned_cols=270 Identities=13% Similarity=0.009 Sum_probs=198.8
Q ss_pred CcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEeccC-CCEEEEEEccCCCEEEEEeC---CCcEEEEeCCC-
Q psy4869 1082 KLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFFTTSK---DGRVKQWDADN- 1155 (2435)
Q Consensus 1082 ~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~~h~-~~V~~v~fsp~~~~l~s~s~---Dg~V~iwD~~~- 1155 (2435)
..+|.+++|+|||+.|++++. ||++.||+++.++. ..+..|. ..+..++|+|+ +.+++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999998887 99999999966654 4454555 68999999998 77777765 45566665543
Q ss_pred -cceeEEEEEEEeecccccCeEEEEEeCCCCE-EEEEeCCCcEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEE
Q psy4869 1156 -FERIVTLHFFISLYGHKLPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1156 -~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~-l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs 1233 (2435)
......+ .....+...+|+++++. +++.+.++.+.+||+.+++...... +.. .++.|+|||+.|+.++
T Consensus 99 ~~g~~~~l-------~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 99 RPGEEQRL-------EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp STTCCEEC-------TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEE
T ss_pred CCCccccc-------cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEE
Confidence 2222222 12223446688888753 4444455556699999887654443 333 8899999999999888
Q ss_pred CC----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 1234 KD----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1309 (2435)
Q Consensus 1234 ~D----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1309 (2435)
.| +.|.+||+.+.+.. .+
T Consensus 169 ~~~~~~~~i~~~d~~~g~~~-~l--------------------------------------------------------- 190 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSSGGLR-VF--------------------------------------------------------- 190 (582)
T ss_dssp EEETTEEEEEEEETTTCCCE-EE---------------------------------------------------------
T ss_pred EcCCCCeEEEEEcCCCCCce-Ee---------------------------------------------------------
Confidence 66 56777776554321 00
Q ss_pred cccccccEEEEEecCCcceeEEeecCC--eEEEEEcccceEEEEecCCCCCeEEEE--------EecCCCEEEEEeCCCc
Q psy4869 1310 TLKLEEQVLCARVSPDSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLD--------MSYDSTLIATGSGDRT 1379 (2435)
Q Consensus 1310 ~~~~~~~i~~ia~spdg~~lavgs~dG--~V~v~d~~~~k~i~~~~~h~~~V~~la--------~spdg~~L~sGg~Dg~ 1379 (2435)
......+..++|+|||+.|+.+..+| .|++||+++++.. .+.+|...+..++ |+|||+++++++.|+.
T Consensus 191 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~ 268 (582)
T 3o4h_A 191 -DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR 268 (582)
T ss_dssp -CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred -ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence 01134567899999999999888888 8999999998887 7778877777777 9999999999999999
Q ss_pred EEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCC---cEEEEECCC
Q psy4869 1380 VKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---RVKQWDADN 1429 (2435)
Q Consensus 1380 V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg---~V~lWd~~~ 1429 (2435)
+++|++ |++.. .+.+.|.+++|+ ++.++++++.+. .|.+||...
T Consensus 269 ~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 269 SAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred EEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999 76654 344679999999 999999888774 466666554
No 201
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=3e-15 Score=191.33 Aligned_cols=275 Identities=10% Similarity=0.101 Sum_probs=191.3
Q ss_pred EEEEEeCC--CeEEEEecC--Ccee-eEEEee-CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC-CCceEEEEecc-C
Q psy4869 376 YIASSGYD--RQIFIWSVY--GECE-NIGVMS-GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE-KGQRIKKMKGH-S 447 (2435)
Q Consensus 376 ~Lasgs~D--g~I~iwd~~--~~~~-~~~~l~-~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~-tg~~v~~l~~h-~ 447 (2435)
+|+.|++. +.|.+|++. ++.. .+.... .....+..++|+|||++|++++.+ .|.+||+. +++........ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556553 467777653 2222 122221 234578899999999999999888 99999997 77765433211 1
Q ss_pred ccccccCcccCCCe-EEEEEe-------------CCCeEEEEeCCC-CcceEeec-----CcccEEEEEECCCCCEEEEE
Q psy4869 448 TFVNSCDPVRRGQL-LIASGS-------------DDCTVKVWDPRK-KNQAVSMN-----NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 448 ~~v~sv~~~~~~~~-llasgs-------------~Dg~I~vwD~~~-~~~~~~~~-----~~~~v~sv~~sp~g~~l~sg 507 (2435)
.....+.++|++.. +++++. .++.+.+|++.. ++....+. +...+.+++|+|+|++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23667899999975 344553 689999999974 54433222 45679999999999998887
Q ss_pred ec-CCeEEEEECC-CCcEE--EEEe--cCCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCCCCCceE---EEEeCcc
Q psy4869 508 GI-DNDIKMWDLR-TNSVV--QKLR--GHSDTVTGLSLSPDGSYILSNAM-DNTVRIWDIRPYVPGERCV---KVMSGHQ 577 (2435)
Q Consensus 508 s~-dg~V~lwD~~-s~~~v--~~l~--~h~~~V~~i~~spdg~~las~s~-Dg~I~lWdl~~~~~~~~~v---~~~~~h~ 577 (2435)
+. ++.|++||+. +++.. ..+. .|...+..++|+|||++|++++. +++|.+|++... .++.. ..+....
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~--~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA--THMPVYTHHSFPLIP 240 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--TCCEEEEEEEEESSC
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC--CCcEEEccceEEcCC
Confidence 64 6899999998 77653 3343 24677999999999999988775 789999987631 12221 1222111
Q ss_pred ccc--cc-------CeEEEE-EcCCCCEEEEecCCC------eEEEEECC-CCcEEE---EecCCCCCeeEEEEcC---C
Q psy4869 578 HNF--EK-------NLLRCA-WSVSGLYVTAGSADK------CVYIWDTT-TRRIAY---KLPGHNGSVNDVQFHP---K 634 (2435)
Q Consensus 578 ~~~--~~-------~i~~v~-~spdg~~Lasgs~Dg------~V~iwd~~-s~~~~~---~l~~h~~~V~~l~fsp---d 634 (2435)
... .. .+..++ |+|||++|++++.+. .|.+|++. ++++.. .+..+...+..++|+| |
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 000 01 367899 999999988776432 89999986 676544 2444666788899999 8
Q ss_pred CCEEEEEECC-CcEEEecCC
Q psy4869 635 EPIIMSASSD-KTIYLGESP 653 (2435)
Q Consensus 635 ~~~Lasgs~D-g~I~vWd~~ 653 (2435)
+++|++++.+ +.|.+|+++
T Consensus 321 g~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp TTEEEEECSSSCEEEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEEEc
Confidence 9999999875 899999986
No 202
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.71 E-value=1.1e-15 Score=193.29 Aligned_cols=296 Identities=10% Similarity=0.052 Sum_probs=204.5
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccC-CCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEE
Q psy4869 1087 SLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHF 1164 (2435)
Q Consensus 1087 sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~ 1164 (2435)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~- 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN- 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE-
Confidence 34677888899999999999999999999888876543 2578999999998665 45568999999999877655543
Q ss_pred EEeeccc-----ccCeEEEEEeCCCCEEEEEeCC------------CcEEEEEccCCcee---eEeeccCCCEEEEEEee
Q psy4869 1165 FISLYGH-----KLPVLSLDMSYDSTLIATGSGD------------RTVKVWGLDYGDCH---KSLLAHEDSVTGVTFVP 1224 (2435)
Q Consensus 1165 ~~~~~~h-----~~~V~~l~~s~dg~~l~sgs~D------------g~V~iwd~~t~~~~---~~~~~h~~~V~~i~~sp 1224 (2435)
..+ ...+..++|+|+|+++++++.+ +.|.+||+.+++.. ..+ .+...+.+++|+|
T Consensus 83 ----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 83 ----LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAAD 157 (349)
T ss_dssp ----SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECT
T ss_pred ----cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECC
Confidence 111 2347789999999999998865 89999999985533 333 3445688999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceee
Q psy4869 1225 KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLS 1304 (2435)
Q Consensus 1225 d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (2435)
+++ +++++ +.|.+||+.+.+.+..+....... +.. .....+.+|...
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~----------------------- 204 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNR-KGY------SAPDVLYFWPHQ----------------------- 204 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCC-TTB------CCCBCCCCCCCC-----------------------
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCC-ccc------cCccceeeecCC-----------------------
Confidence 999 66553 449999998887665543321000 000 000001111110
Q ss_pred eeecccccccccEEEEEecCCccee-----------EEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec-CCCEEE
Q psy4869 1305 LLHTRTLKLEEQVLCARVSPDSKLL-----------AVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY-DSTLIA 1372 (2435)
Q Consensus 1305 ~~~~~~~~~~~~i~~ia~spdg~~l-----------avgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp-dg~~L~ 1372 (2435)
...........+++++++... .+....+.+.++++ ..+...+..++|+| ||++|+
T Consensus 205 ----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 205 ----SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp ----CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEE
T ss_pred ----CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEE
Confidence 000001123456666654222 12333444554443 22556788999999 999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEEEEe
Q psy4869 1373 TGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1373 sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++ ++.|++||+.+++.+..+..+ ..+.+++|+|++.+|++++.|+.|.+||..+.+.++.++
T Consensus 272 ~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 272 GV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 98 899999999999988776543 357799999999888888889999999999999888876
No 203
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.70 E-value=1.5e-15 Score=198.21 Aligned_cols=246 Identities=13% Similarity=0.026 Sum_probs=177.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCce---------eeEE-----EeeCCCCCeeEEEEccCCCEEE----EEe
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC---------ENIG-----VMSGHTGAVMDLKFSTDGCHIF----TCS 424 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~---------~~~~-----~l~~h~~~V~~l~~s~dg~~L~----s~s 424 (2435)
..++.+++++++.++++|+.++ +++|+..... .... ....|.+.|.+++|++++++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4578899999999999999988 8888753110 0000 1123667899999999999999 788
Q ss_pred CCCeEEEEECCCC--------c---eEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccE
Q psy4869 425 TDQTLAVWDLEKG--------Q---RIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQV 492 (2435)
Q Consensus 425 ~Dg~I~vwd~~tg--------~---~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v 492 (2435)
.|+.|++||++++ + .+..+.+|...|.+++|+|++..+|++++.|++|++||++++...... .|...|
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v 195 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV 195 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence 8999999998765 2 245567899999999999997789999999999999999988655433 567899
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC-------CCEEEEEEcCCCCEEEE-EECCCc------EEEE
Q psy4869 493 TSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS-------DTVTGLSLSPDGSYILS-NAMDNT------VRIW 558 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~-------~~V~~i~~spdg~~las-~s~Dg~------I~lW 558 (2435)
.+++|+|+|++|++|+.||.|++||.+ ++....+..|. ..|.+++|++++.++++ ++.||. +++|
T Consensus 196 ~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 196 TSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEE
T ss_pred eEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEE
Confidence 999999999999999999999999999 66666665442 38999999999888865 445543 8999
Q ss_pred EcCCCCCC-CceEEEEeCccc---ccccCeEEEEEcCCCCEEEEec-CCCeEEEEEC
Q psy4869 559 DIRPYVPG-ERCVKVMSGHQH---NFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDT 610 (2435)
Q Consensus 559 dl~~~~~~-~~~v~~~~~h~~---~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~ 610 (2435)
|++..... ......+..... ........+.+-++.+++++++ ..+.|.|+..
T Consensus 275 ~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 275 LLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp ECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 99854221 112222221100 1111223344446667666654 4555666654
No 204
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.69 E-value=8.3e-16 Score=197.86 Aligned_cols=292 Identities=13% Similarity=0.133 Sum_probs=201.9
Q ss_pred eEecccCCcEEE-----EEECCCCCEEEEEeC-CC--eEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC
Q psy4869 356 MLLEGHGGEIFC-----SKYHPDGQYIASSGY-DR--QIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ 427 (2435)
Q Consensus 356 ~~l~gH~~~V~~-----l~fspdg~~Lasgs~-Dg--~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg 427 (2435)
..+..|...... .+|+|||++|+.++. +| .|.+||+.+.. ......++...+..+.|+|||++|+.++.++
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 445566666665 789999999999887 67 48888887653 2334455666666789999999999999999
Q ss_pred eEEEEECCCCceEEEEeccCccccccC--cccCCCeEEEE---------------------EeCCCeEEEEeCCCCcceE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCD--PVRRGQLLIAS---------------------GSDDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~--~~~~~~~llas---------------------gs~Dg~I~vwD~~~~~~~~ 484 (2435)
.|++||+.+++....+..+...+.... +.+++..++.. ...+..|.+||+.+++...
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~ 182 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV 182 (388)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE
T ss_pred eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEE
Confidence 999999999987776666655443333 36666554422 2245789999999887766
Q ss_pred eecCcccEEEEEECC-CCCEEEEEecC------CeEEEEECCCCcEEEEEecCC--CCEEEEEEcCCCCEEEEEEC-CC-
Q psy4869 485 SMNNTYQVTSVAFND-TAECVLTGGID------NDIKMWDLRTNSVVQKLRGHS--DTVTGLSLSPDGSYILSNAM-DN- 553 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp-~g~~l~sgs~d------g~V~lwD~~s~~~v~~l~~h~--~~V~~i~~spdg~~las~s~-Dg- 553 (2435)
...+...+..++|+| +|+.|+....+ ..|+++|...++. ..+..+. ..+..+.|+|||+.|+..+. ++
T Consensus 183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (388)
T 3pe7_A 183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS 261 (388)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTC
T ss_pred eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCC
Confidence 666677789999999 99999877653 3788899876654 3344344 35788999999998865443 22
Q ss_pred ---cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe---------cCCCeEEEEECCCCcEEEEecC
Q psy4869 554 ---TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG---------SADKCVYIWDTTTRRIAYKLPG 621 (2435)
Q Consensus 554 ---~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg---------s~Dg~V~iwd~~s~~~~~~l~~ 621 (2435)
.|.+||+.... .+.+..+.++.+.. .......|+|||++|+.. ..+..|++||+.+++. ..+..
T Consensus 262 ~~~~l~~~d~~~g~--~~~l~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~ 337 (388)
T 3pe7_A 262 PDRFIYSADPETLE--NRQLTSMPACSHLM-SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVAR 337 (388)
T ss_dssp CCEEEEEECTTTCC--EEEEEEECCEEEEE-ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEE
T ss_pred CcceEEEEecCCCc--eEEEEcCCCceeee-ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEecc
Confidence 39999997431 12333333311000 001113799999988854 4567899999998876 34445
Q ss_pred CCC-----------CeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 622 HNG-----------SVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 622 h~~-----------~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
|.. .+..++|+||++.|+..+ .+|...+|.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 555 578899999999887666 46776776654
No 205
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=8e-15 Score=205.61 Aligned_cols=370 Identities=12% Similarity=0.119 Sum_probs=231.0
Q ss_pred EeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC---------CeEEE
Q psy4869 31 LKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN---------GSLKT 101 (2435)
Q Consensus 31 ~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~---------G~i~i 101 (2435)
.|+|||++|+++ +|.|++||+.+++....+...... .......+++|+|||++|+.++.+ |.+.+
T Consensus 23 ~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~ 96 (740)
T 4a5s_A 23 RWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFD-----EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI 96 (740)
T ss_dssp EECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTT-----TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred EECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhh-----hhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence 678999999998 999999999887644332221111 111122358899999999999875 66789
Q ss_pred EECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEE-EecCCCcE-----------------E
Q psy4869 102 FSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR-LSGHKGVI-----------------T 163 (2435)
Q Consensus 102 ~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~-l~gH~~~V-----------------~ 163 (2435)
||+.+++.. .+.+|.+.+..++|+|||++||.+ .|+.|.+||..++...+. ..++...+ .
T Consensus 97 ~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 97 YDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 999998754 577888999999999999999998 478999999987664432 22443333 2
Q ss_pred EEEEeecCCCcEEEEEeCCCc-EEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCC---CCCcc
Q psy4869 164 DIRFMSQPGHHFVVSSAKDTF-VKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRD---RSDID 239 (2435)
Q Consensus 164 ~v~~~~~~~~~~l~S~s~Dg~-I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~---~~~~~ 239 (2435)
.+.|+| ++..|+.++.|.+ |++|++....... .+...+..+.+.+.|.. ..+.+|++||+.+ +..+.
T Consensus 175 ~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 175 ALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp CEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCC
T ss_pred ceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcce
Confidence 367764 3445555554433 7777654222111 34445555666555432 1222466666654 21000
Q ss_pred ccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhh
Q psy4869 240 TEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRS 319 (2435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (2435)
T Consensus 246 -------------------------------------------------------------------------------- 245 (740)
T 4a5s_A 246 -------------------------------------------------------------------------------- 245 (740)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC----CCeEEEEecCCce
Q psy4869 320 MKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY----DRQIFIWSVYGEC 395 (2435)
Q Consensus 320 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~----Dg~I~iwd~~~~~ 395 (2435)
... +. .| ..+.+|...+..++|+|||++++.... +..|++||+.++.
T Consensus 246 -----------------~~~-l~----------~~-~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 246 -----------------SIQ-IT----------AP-ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp -----------------EEE-EC----------CC-HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred -----------------EEE-ec----------CC-ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 000 00 00 002256777889999999997766543 3479999987653
Q ss_pred -----eeEEE--eeCCCCCee-----EEEEccCCCEEE-EEeC-C--CeEEEEECCCCceEEEEeccCccccccCcccCC
Q psy4869 396 -----ENIGV--MSGHTGAVM-----DLKFSTDGCHIF-TCST-D--QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 396 -----~~~~~--l~~h~~~V~-----~l~~s~dg~~L~-s~s~-D--g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~ 459 (2435)
..... -..|.+.|. .++|+|||+.|+ ..+. + ..|++||+.+++......+ ...+..+. .+++
T Consensus 297 ~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~~-~~d~ 374 (740)
T 4a5s_A 297 GRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGIE-ALTS 374 (740)
T ss_dssp TEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEEE-EECS
T ss_pred cccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEEE-EEeC
Confidence 11111 245666665 789999999877 6664 3 4688999987765443333 33333332 2346
Q ss_pred CeEEEEEeC----CC--eEEEEeCCCCcceEeec-----CcccEEEEEECCCCCEEEEEecC---CeEEEEECCCCcEEE
Q psy4869 460 QLLIASGSD----DC--TVKVWDPRKKNQAVSMN-----NTYQVTSVAFNDTAECVLTGGID---NDIKMWDLRTNSVVQ 525 (2435)
Q Consensus 460 ~~llasgs~----Dg--~I~vwD~~~~~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs~d---g~V~lwD~~s~~~v~ 525 (2435)
..+++++.. .+ .|...++..+.....+. .......+.|+|++++++..... ..+.++|..+++.+.
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~ 454 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR 454 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence 666666655 23 44455555443322333 23568899999999988765443 468888988887665
Q ss_pred EEe
Q psy4869 526 KLR 528 (2435)
Q Consensus 526 ~l~ 528 (2435)
.+.
T Consensus 455 ~l~ 457 (740)
T 4a5s_A 455 VLE 457 (740)
T ss_dssp EEE
T ss_pred Eec
Confidence 554
No 206
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.67 E-value=6.4e-15 Score=206.60 Aligned_cols=351 Identities=9% Similarity=0.035 Sum_probs=232.7
Q ss_pred EEeecCCCCeEEEEEcCCeEEEEECCCCCeEEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---------CCEEEEE
Q psy4869 80 QLSPNHDSSQLAVAYTNGSLKTFSLDTTDVISTFTGHKSA-----ITVIQYDPLGHRLATGSKD---------TDIVLWD 145 (2435)
Q Consensus 80 ~~~~~~d~~~lav~~~~G~i~i~d~~~~~~~~~l~gH~~~-----V~~l~f~p~g~~laSgs~D---------g~I~iWd 145 (2435)
.+.|++||.+++.+ +|.|++||+.+++....+.+|... ...++|+|||++||.++.| +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 68999999888776 999999999999998889988743 2347899999999999887 5567999
Q ss_pred ccCCeeEEEEecCCCcEEEEEEeecCCCcEEEEEeCCCcEEEEeccCCcccc-ccccccceE-----------------E
Q psy4869 146 VVAECGLHRLSGHKGVITDIRFMSQPGHHFVVSSAKDTFVKIWDADTGDCFK-TMAAHLTEV-----------------W 207 (2435)
Q Consensus 146 ~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~S~s~Dg~I~iWd~~tg~~~~-~~~~h~~~V-----------------~ 207 (2435)
+.+++.. .+..|.+.+..++|+|+ ++.|+.+ .|+.|.+||+.+|+..+ +..++...+ .
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPd--G~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 99 LNKRQLI-TEERIPNNTQWVTWSPV--GHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSS--TTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred CCCCcEE-EcccCCCcceeeEECCC--CCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9988743 46788889999999864 4456666 57899999999887643 223443323 2
Q ss_pred EEEEEeCCCeEEEeeCCCc-EEEEEcCCCCCccccchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceE
Q psy4869 208 GVCVMREDSYLISGSNDAE-LKVWNVRDRSDIDTEDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWL 286 (2435)
Q Consensus 208 ~l~~~p~~~~l~s~s~Dg~-v~vwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~ 286 (2435)
++.|+|||++|+.++.|.+ +.+|++...... .
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~--------------------~--------------------------- 207 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE--------------------S--------------------------- 207 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCST--------------------T---------------------------
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCC--------------------C---------------------------
Confidence 4889999999998776654 777765311000 0
Q ss_pred EEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEE
Q psy4869 287 QVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIF 366 (2435)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~ 366 (2435)
+|...+.
T Consensus 208 -------------------------------------------------------------------------~~~~~~~ 214 (740)
T 4a5s_A 208 -------------------------------------------------------------------------LQYPKTV 214 (740)
T ss_dssp -------------------------------------------------------------------------CSSCEEE
T ss_pred -------------------------------------------------------------------------CCCCcce
Confidence 0111122
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCC---cee-eEEEee------CCCCCeeEEEEccCCCEEEEEeC----CCeEEEE
Q psy4869 367 CSKYHPDGQYIASSGYDRQIFIWSVYG---ECE-NIGVMS------GHTGAVMDLKFSTDGCHIFTCST----DQTLAVW 432 (2435)
Q Consensus 367 ~l~fspdg~~Lasgs~Dg~I~iwd~~~---~~~-~~~~l~------~h~~~V~~l~~s~dg~~L~s~s~----Dg~I~vw 432 (2435)
.++|.+.|.. ..+..|++||+.+ +.. ....+. +|...+..++|+|||+.++.... +..|++|
T Consensus 215 ~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~ 290 (740)
T 4a5s_A 215 RVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDIC 290 (740)
T ss_dssp EEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEE
T ss_pred eecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEE
Confidence 2333333321 1122688899876 421 112232 48888999999999997666543 3479999
Q ss_pred ECCCCc----eE--EEE--eccCcccc-----ccCcccCCCeEEEEEe-CCC--eEEEEeCCCCcceEeecCcccEEEEE
Q psy4869 433 DLEKGQ----RI--KKM--KGHSTFVN-----SCDPVRRGQLLIASGS-DDC--TVKVWDPRKKNQAVSMNNTYQVTSVA 496 (2435)
Q Consensus 433 d~~tg~----~v--~~l--~~h~~~v~-----sv~~~~~~~~llasgs-~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~ 496 (2435)
|+.+|+ +. ..+ .+|...+. ...|+|++..++...+ .+| .|.+||+..+...........+..+.
T Consensus 291 d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~ 370 (740)
T 4a5s_A 291 DYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE 370 (740)
T ss_dssp EEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE
T ss_pred ECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE
Confidence 999887 11 222 45666665 6889999987763444 444 68888988776654444555666554
Q ss_pred ECCCCCEEEEEecC-----C--eEEEEECCCCcEEEEEec----CCCCEEEEEEcCCCCEEEEEECC---CcEEEEEcC
Q psy4869 497 FNDTAECVLTGGID-----N--DIKMWDLRTNSVVQKLRG----HSDTVTGLSLSPDGSYILSNAMD---NTVRIWDIR 561 (2435)
Q Consensus 497 ~sp~g~~l~sgs~d-----g--~V~lwD~~s~~~v~~l~~----h~~~V~~i~~spdg~~las~s~D---g~I~lWdl~ 561 (2435)
. ++++.|+..+.. + .|+..++..++....+.. ....+..+.|+|||++++..... ..+.+++..
T Consensus 371 ~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~ 448 (740)
T 4a5s_A 371 A-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV 448 (740)
T ss_dssp E-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred E-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence 2 346655544332 3 455556655444334432 24578899999999987754433 356666654
No 207
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=2.3e-14 Score=182.50 Aligned_cols=301 Identities=15% Similarity=0.079 Sum_probs=213.7
Q ss_pred CCCEEEEEEC------CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC----------CCcEEEEEccCC
Q psy4869 1051 DSKLLAVSLL------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG----------DRTVKVWGLDYG 1114 (2435)
Q Consensus 1051 dg~~Lavg~~------dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~----------Dg~I~vWd~~t~ 1114 (2435)
+++++++... |+.|.+||..+++.+..+..+..+ .++|+||+++|+++.. ++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 5667777652 579999999999998888877666 8999999999998863 678999999999
Q ss_pred ceeEEEecc------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEE-EEEEEeecccccCeEEEEEeCCC-
Q psy4869 1115 DCHKSLLAH------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVT-LHFFISLYGHKLPVLSLDMSYDS- 1184 (2435)
Q Consensus 1115 ~~~~~l~~h------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~dg- 1184 (2435)
+.+..+... ......++|+|++++|+++.. ++.|.+||+.+.+.+.. +. . .....+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~-------~-~~~~~v~~~p~~~ 163 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTA-------A-AGCWSVIPQPNRP 163 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGG-------G-TTEEEEEECTTSS
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEec-------C-CCcceeEEcCCCC
Confidence 988887642 345678999999999998874 57899999998765443 21 1 122335566765
Q ss_pred CEEEEEeCCCcEEEEEccC-CceeeE------eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCc
Q psy4869 1185 TLIATGSGDRTVKVWGLDY-GDCHKS------LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPN 1257 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t-~~~~~~------~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~ 1257 (2435)
..+++.+.||.+.+|++.. ++.... +..+..++ .+.+.+++..++..+.++.+.++|+.......
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~------- 235 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKV------- 235 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEE-------
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCcee-------
Confidence 6778888999999999865 554311 11222222 22335666666666777778777775432110
Q ss_pred ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec---
Q psy4869 1258 VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL--- 1334 (2435)
Q Consensus 1258 ~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~--- 1334 (2435)
+..|++..... . . .... + ....-++|+||++.+.+...
T Consensus 236 -----------------~~~~~~~~~~~--------~--~---~~~~-------p--~g~~~~a~~~dg~~lyv~~~~~~ 276 (361)
T 2oiz_A 236 -----------------DGPWSLLNDED--------K--A---KNWV-------P--GGYNLVGLHRASGRMYVFMHPDG 276 (361)
T ss_dssp -----------------EEEEESCCHHH--------H--H---TTCE-------E--CCSSCEEEETTTTEEEEEEESSC
T ss_pred -----------------cccccccCccc--------c--c---cccc-------c--CCeeEEEEecCCCeEEEEEccCC
Confidence 11122210000 0 0 0000 0 00112578999887777543
Q ss_pred --------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCC--ceEEEecccccceEEE
Q psy4869 1335 --------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG--DCHKSLLAHEDSVTGV 1404 (2435)
Q Consensus 1335 --------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~g--k~~~~~~~h~~~V~~l 1404 (2435)
.+.|.+||.++++.+..+..+. +..++|+|||++|++++. +.|.+||..++ ++++.+..+......+
T Consensus 277 ~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 277 KEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp CTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred CcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 3589999999999999999877 999999999999999987 99999999999 9998877776778899
Q ss_pred EEeeCCC
Q psy4869 1405 TFVPKTH 1411 (2435)
Q Consensus 1405 af~P~~~ 1411 (2435)
+|+|+|+
T Consensus 354 ~~~p~G~ 360 (361)
T 2oiz_A 354 QFHPVGG 360 (361)
T ss_dssp EECCCSC
T ss_pred EecCCCC
Confidence 9999985
No 208
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=1.7e-14 Score=185.66 Aligned_cols=298 Identities=14% Similarity=0.048 Sum_probs=205.5
Q ss_pred EEEcCCCeEEEEEecCCcCEEE-----EEEcCCCCEEEEEEC-CC--cEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1066 IFFLDTFKFFISLYGHKLPVLS-----LDMSYDSTLIATGSG-DR--TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1066 i~d~~~~~~~~~l~~h~~~V~s-----l~~spdg~~L~Sgs~-Dg--~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
..+..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++.......+...+..+.|+|+++
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 3456677778888878777766 889999999998887 66 388889988887766666666666778999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEE--EEeCCCCEEEEE----------------------eCC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSL--DMSYDSTLIATG----------------------SGD 1193 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l--~~s~dg~~l~sg----------------------s~D 1193 (2435)
.|+.++.++.|++||+.+++...... .+...+... .+++++.+++.. ..+
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~------~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQ------VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred EEEEEeCCCeEEEEECCCCcceeeee------chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 99999999999999999877654432 333334333 347899888743 234
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCC------cEEEEECCCCceEEEEeeCCcccccCceEE
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDG------RVKQWDADNFERIVTLHFNPNVYLPLQIQV 1266 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg------~I~vwD~~~~~~v~~~~~~~~~~~~~~~~l 1266 (2435)
..|++||+.+++. ..+..+...+..+.|+| +++.|+....++ .|.++|........
T Consensus 168 ~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~---------------- 230 (388)
T 3pe7_A 168 CRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK---------------- 230 (388)
T ss_dssp EEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE----------------
T ss_pred ceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE----------------
Confidence 6799999998874 44556777899999999 999888776532 34444432211000
Q ss_pred EEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-CC----eEEEE
Q psy4869 1267 VTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL-DT----TVKIF 1341 (2435)
Q Consensus 1267 v~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~-dG----~V~v~ 1341 (2435)
+ ........+..++|+|||+.|+..+. ++ .|++|
T Consensus 231 -------------l----------------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 231 -------------V----------------------------KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp -------------S----------------------------CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred -------------e----------------------------eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 0 00000124667889999998876553 22 39999
Q ss_pred EcccceE--EEEecCCCCC---eEEEEEecCCCEEEEE---------eCCCcEEEEeCCCCceEEEeccccc--------
Q psy4869 1342 FLDTFKF--FISLYGHKLP---VLSLDMSYDSTLIATG---------SGDRTVKVWGLDYGDCHKSLLAHED-------- 1399 (2435)
Q Consensus 1342 d~~~~k~--i~~~~~h~~~---V~~la~spdg~~L~sG---------g~Dg~V~iwdl~~gk~~~~~~~h~~-------- 1399 (2435)
|+++++. +..+.++... ...++|+|||+.|+.. ..+..|++||+.++++ ..+..|..
T Consensus 270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGD 348 (388)
T ss_dssp CTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTB
T ss_pred ecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccc
Confidence 9988764 3333331100 1123799999988754 5567899999998875 44555554
Q ss_pred ---ceEEEEEeeCCCEEEEEe-CCCcEEEEECC
Q psy4869 1400 ---SVTGVTFVPKTHYFFTTS-KDGRVKQWDAD 1428 (2435)
Q Consensus 1400 ---~V~~laf~P~~~~laSgg-~Dg~V~lWd~~ 1428 (2435)
.+..++|+|++.+|+..+ .+|...||.++
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 578999999998887655 57777777655
No 209
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.64 E-value=8.9e-15 Score=190.99 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=156.1
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-----------eEEE----EEecCCcCEEEEEEcCCCCEEE----EEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF-----------KFFI----SLYGHKLPVLSLDMSYDSTLIA----TGS 1101 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~-----------~~~~----~l~~h~~~V~sl~~spdg~~L~----Sgs 1101 (2435)
..++.+++++++.+|++++.++ +++|+.... .... ....|...|.+++|+|++++|+ +|+
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 3577899999999999999887 888874311 1111 1123567899999999999999 788
Q ss_pred CCCcEEEEEccCC--------ce---eEEEeccCCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeec
Q psy4869 1102 GDRTVKVWGLDYG--------DC---HKSLLAHEDSVTGVTFVPK-THYFFTTSKDGRVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1102 ~Dg~I~vWd~~t~--------~~---~~~l~~h~~~V~~v~fsp~-~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.|+.|++||++++ +. +..+.+|...|.+++|+|+ +++|++++.||.|++||+++...... ..
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~------~~ 189 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCA------TL 189 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEE------EE
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceee------cc
Confidence 8999999999765 22 3445669999999999997 78999999999999999998744322 23
Q ss_pred ccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc-------CCCEEEEEEeeCCCEEEEEE-CCCc----
Q psy4869 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-------EDSVTGVTFVPKTHYFFTTS-KDGR---- 1237 (2435)
Q Consensus 1170 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h-------~~~V~~i~~spd~~~lvsgs-~Dg~---- 1237 (2435)
.|...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++.|++++.++++.+ .||.
T Consensus 190 ~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~ 268 (434)
T 2oit_A 190 PSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETS 268 (434)
T ss_dssp CGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSC
T ss_pred CCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCC
Confidence 688999999999999999999999999999998 6655555433 33899999999887775543 4543
Q ss_pred --EEEEECCCC
Q psy4869 1238 --VKQWDADNF 1246 (2435)
Q Consensus 1238 --I~vwD~~~~ 1246 (2435)
+++||++..
T Consensus 269 ~~v~i~~l~~~ 279 (434)
T 2oit_A 269 PDVVMALLPKK 279 (434)
T ss_dssp CEEEEEECCCT
T ss_pred CceEEEEeccC
Confidence 899999864
No 210
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.60 E-value=1.3e-13 Score=176.18 Aligned_cols=275 Identities=9% Similarity=0.099 Sum_probs=185.8
Q ss_pred EEEEEECC--CcEEEEEc--cCCceeEE--Ee-ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC-CcceeEEEEEEEe
Q psy4869 1096 LIATGSGD--RTVKVWGL--DYGDCHKS--LL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD-NFERIVTLHFFIS 1167 (2435)
Q Consensus 1096 ~L~Sgs~D--g~I~vWd~--~t~~~~~~--l~-~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~-~~~~~~~~~~~~~ 1167 (2435)
.|+.|+.. +.|.+|++ ++++.... .. .....+..++|+|++++|++++.+ .|.+||+. +++......
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~---- 78 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS---- 78 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE----
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE----
Confidence 35556553 46887776 45543222 11 233467889999999999999888 99999987 554332211
Q ss_pred ecccccCeEEEEEeCCCCE--EEEEe-------------CCCcEEEEEcc-CCceeeEee----ccCCCEEEEEEeeCCC
Q psy4869 1168 LYGHKLPVLSLDMSYDSTL--IATGS-------------GDRTVKVWGLD-YGDCHKSLL----AHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1168 ~~~h~~~V~~l~~s~dg~~--l~sgs-------------~Dg~V~iwd~~-t~~~~~~~~----~h~~~V~~i~~spd~~ 1227 (2435)
...+ +.+.+++|+|+|++ ++++. .++.+.+|++. .++....+. .+...+.++.|+|+++
T Consensus 79 ~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~ 157 (365)
T 1jof_A 79 HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET 157 (365)
T ss_dssp EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred eecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC
Confidence 1111 22456889999994 45553 68999999997 466544443 2556899999999999
Q ss_pred EEEEEEC-CCcEEEEECC-CCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeee
Q psy4869 1228 YFFTTSK-DGRVKQWDAD-NFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSL 1305 (2435)
Q Consensus 1228 ~lvsgs~-Dg~I~vwD~~-~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 1305 (2435)
+|+++.. ++.|.+||+. +.+... + ....+.
T Consensus 158 ~l~~~~~~~~~v~~~~~~~~g~~~~-~-----------------------~~~~~~------------------------ 189 (365)
T 1jof_A 158 YLYSADLTANKLWTHRKLASGEVEL-V-----------------------GSVDAP------------------------ 189 (365)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEE-E-----------------------EEEECS------------------------
T ss_pred EEEEEcCCCCEEEEEEECCCCCEEE-e-----------------------eeEecC------------------------
Confidence 8887764 6788888876 332110 0 000000
Q ss_pred eecccccccccEEEEEecCCcceeEEeec-CCeEEEEEcc--cceEE---E---EecC----CCC------CeEEEE-Ee
Q psy4869 1306 LHTRTLKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLD--TFKFF---I---SLYG----HKL------PVLSLD-MS 1365 (2435)
Q Consensus 1306 ~~~~~~~~~~~i~~ia~spdg~~lavgs~-dG~V~v~d~~--~~k~i---~---~~~~----h~~------~V~~la-~s 1365 (2435)
......+.++|+|||++++++.. ++.|.+|+++ ++++. . .+.. |.. .+..++ |+
T Consensus 190 ------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s 263 (365)
T 1jof_A 190 ------DPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT 263 (365)
T ss_dssp ------STTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC
T ss_pred ------CCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC
Confidence 01234778999999999888764 7899999876 45542 1 2221 122 488999 99
Q ss_pred cCCCEEEEEeCCC------cEEEEeCC-CCceEEE---ecccccceEEEEEee---CCCEEEEEeCC-CcEEEEECCCc
Q psy4869 1366 YDSTLIATGSGDR------TVKVWGLD-YGDCHKS---LLAHEDSVTGVTFVP---KTHYFFTTSKD-GRVKQWDADNF 1430 (2435)
Q Consensus 1366 pdg~~L~sGg~Dg------~V~iwdl~-~gk~~~~---~~~h~~~V~~laf~P---~~~~laSgg~D-g~V~lWd~~~~ 1430 (2435)
|||++|++++.+. .|.+|++. +|++... ...+...+..++|+| ++++|++++.+ +.|.+|+++..
T Consensus 264 pdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 264 FSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 9999988776433 89999996 6776542 333555677899999 79999988865 89999999865
No 211
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.60 E-value=1.6e-14 Score=186.04 Aligned_cols=274 Identities=14% Similarity=0.101 Sum_probs=190.3
Q ss_pred EEEEEECCCCCEEEEEeCC---CeEEEEecCCceeeEEEeeCCCCC-eeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 365 IFCSKYHPDGQYIASSGYD---RQIFIWSVYGECENIGVMSGHTGA-VMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~D---g~I~iwd~~~~~~~~~~l~~h~~~-V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
+..++|+|||++|+..... ..|.+||+.++.. ..+..+... ...+.|+|||++|+.++.++.|++||+.+++..
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQA--VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEE--EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcE--EEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 5678899999998877543 3688888876532 223333333 334889999999999999999999999988866
Q ss_pred EEEeccCccccc-------------------cCcccCCCeEEEEE----eCCCeEEEEeCCCCcceEeecCcccEEEEEE
Q psy4869 441 KKMKGHSTFVNS-------------------CDPVRRGQLLIASG----SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAF 497 (2435)
Q Consensus 441 ~~l~~h~~~v~s-------------------v~~~~~~~~llasg----s~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~ 497 (2435)
.....+...... +.++|++..+++.. ..+..|.+||+.+++......+...+..+.|
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceE
Confidence 655544433222 45677665443322 4667899999998877666666677899999
Q ss_pred CC-CCCEEEEEecC------CeEEEEECCCCcEEEEEecCC--CCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 498 ND-TAECVLTGGID------NDIKMWDLRTNSVVQKLRGHS--DTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 498 sp-~g~~l~sgs~d------g~V~lwD~~s~~~v~~l~~h~--~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
+| +++.|+..+.+ ..|++||+..++... +..+. ..+..+.|+|||++|+.++.+ +.|++||+..
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~- 273 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET- 273 (396)
T ss_dssp ETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT-
T ss_pred CCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC-
Confidence 99 78877766543 468999987765433 33232 358889999999988877654 4599999874
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEec----------------CCCeEEEEECCCCcEEEEecCCCC--
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAGS----------------ADKCVYIWDTTTRRIAYKLPGHNG-- 624 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasgs----------------~Dg~V~iwd~~s~~~~~~l~~h~~-- 624 (2435)
++........ ... +.|+| ||++|+.++ .++.|++||+.+++.. .+..|..
T Consensus 274 ---g~~~~l~~~~------~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~ 342 (396)
T 3c5m_A 274 ---LENEEVMVMP------PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW 342 (396)
T ss_dssp ---CCEEEEEECC------SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred ---CCeEEeeeCC------CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence 2222222111 122 88999 999888754 3478999999888753 3444444
Q ss_pred ---------CeeEEEEcCCCCEEEEEEC-CCcEEEecCC
Q psy4869 625 ---------SVNDVQFHPKEPIIMSASS-DKTIYLGESP 653 (2435)
Q Consensus 625 ---------~V~~l~fspd~~~Lasgs~-Dg~I~vWd~~ 653 (2435)
.+..++|+|+++.|+.++. ++...+|.++
T Consensus 343 ~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 343 DVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2667899999998887765 5665666554
No 212
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.56 E-value=3.7e-13 Score=171.35 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=197.4
Q ss_pred CCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeC----------CCeEEEEecCC
Q psy4869 324 NDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGY----------DRQIFIWSVYG 393 (2435)
Q Consensus 324 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~----------Dg~I~iwd~~~ 393 (2435)
++.+.+||....... ..+..+..+ .++|+|||++|+++.. ++.|.+||...
T Consensus 30 d~~v~v~D~~t~~~~-----------------~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t 90 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFL-----------------GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK 90 (361)
T ss_dssp GCEEEEEETTTCCEE-----------------EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred cCeEEEEECCCCeEE-----------------EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence 457788886543221 123334444 7899999999998863 67899999875
Q ss_pred ceeeEEEeeC------CCCCeeEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEE-EeccCccccccCcccCCCeEEE
Q psy4869 394 ECENIGVMSG------HTGAVMDLKFSTDGCHIFTCST--DQTLAVWDLEKGQRIKK-MKGHSTFVNSCDPVRRGQLLIA 464 (2435)
Q Consensus 394 ~~~~~~~l~~------h~~~V~~l~~s~dg~~L~s~s~--Dg~I~vwd~~tg~~v~~-l~~h~~~v~sv~~~~~~~~lla 464 (2435)
.. ....+.. +......++++|||++|+++.. ++.|.+||+.+++.+.. +..... ..+.+.|.+...++
T Consensus 91 ~~-~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~--~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 91 LT-FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC--WSVIPQPNRPRSFM 167 (361)
T ss_dssp CC-EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE--EEEEECTTSSSEEE
T ss_pred Cc-EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc--ceeEEcCCCCeeEE
Confidence 33 2333321 2346778999999999998874 58999999999988877 543221 11345676667788
Q ss_pred EEeCCCeEEEEeCCC-CcceEe------ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE--EEEEec------
Q psy4869 465 SGSDDCTVKVWDPRK-KNQAVS------MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV--VQKLRG------ 529 (2435)
Q Consensus 465 sgs~Dg~I~vwD~~~-~~~~~~------~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~--v~~l~~------ 529 (2435)
+.+.||.+.+|+... ++.... +........+.+.+++..++..+.++.|+++|+..... +..+.-
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 899999999999865 433311 11111112333456778888888899999999976542 222221
Q ss_pred CC----CCEEEEEEcCCCCEEEEEEC-----------CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCC
Q psy4869 530 HS----DTVTGLSLSPDGSYILSNAM-----------DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGL 594 (2435)
Q Consensus 530 h~----~~V~~i~~spdg~~las~s~-----------Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~ 594 (2435)
+. .....++|+||+++++++.. +++|.+||+.. .+.+..+..+. ...++|+|||+
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t----~~~v~~i~~~~------p~~ia~spdg~ 317 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT----KQRVARIPGRD------ALSMTIDQQRN 317 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT----TEEEEEEECTT------CCEEEEETTTT
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC----CcEEEEEecCC------eeEEEECCCCC
Confidence 11 11123789999988887643 34899999883 56777776552 57899999999
Q ss_pred EEEEecCCCeEEEEECCCC--cEEEEecCCCCCeeEEEEcCCCC
Q psy4869 595 YVTAGSADKCVYIWDTTTR--RIAYKLPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 595 ~Lasgs~Dg~V~iwd~~s~--~~~~~l~~h~~~V~~l~fspd~~ 636 (2435)
+|++++. +.|.+||..++ +++..+..+......++|+|+|+
T Consensus 318 ~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 318 LMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999887 99999999999 99999888888999999999985
No 213
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.56 E-value=1.2e-13 Score=191.43 Aligned_cols=336 Identities=11% Similarity=0.070 Sum_probs=209.2
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEE--eCCCCEEEEEccCCeeEEEEecCCCcEE---------EEEEeecCCCcE-EE-
Q psy4869 111 STFTGHKSAITVIQYDPLGHRLATG--SKDTDIVLWDVVAECGLHRLSGHKGVIT---------DIRFMSQPGHHF-VV- 177 (2435)
Q Consensus 111 ~~l~gH~~~V~~l~f~p~g~~laSg--s~Dg~I~iWd~~~~~~~~~l~gH~~~V~---------~v~~~~~~~~~~-l~- 177 (2435)
..+.+|...|..++|++++-+++++ +.|+...||..........+.+|...|. ...|+.++++.. |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3567899999999999887777777 6688999999755556677788887777 677763233344 44
Q ss_pred EEeCCCcEEEEecc--CCcccccccc-----ccceEEEEEEEeCCCeEEEeeCC----------CcEEEEEcCCCCCccc
Q psy4869 178 SSAKDTFVKIWDAD--TGDCFKTMAA-----HLTEVWGVCVMREDSYLISGSND----------AELKVWNVRDRSDIDT 240 (2435)
Q Consensus 178 S~s~Dg~I~iWd~~--tg~~~~~~~~-----h~~~V~~l~~~p~~~~l~s~s~D----------g~v~vwdl~~~~~~~~ 240 (2435)
+...+..|.+||+. .+.....+.. |...+..++|+|||+.|+.++.| ..|++||+.+.....
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD- 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC-
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc-
Confidence 44446667777765 3033455544 67889999999999999988876 355555554210000
Q ss_pred cchhhhhhhcceeecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhc
Q psy4869 241 EDKDKLSEQLNQLLLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSM 320 (2435)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (2435)
.
T Consensus 176 -----~-------------------------------------------------------------------------- 176 (662)
T 3azo_A 176 -----R-------------------------------------------------------------------------- 176 (662)
T ss_dssp -----G--------------------------------------------------------------------------
T ss_pred -----C--------------------------------------------------------------------------
Confidence 0
Q ss_pred ccCCCeEEEEeCccceeeeeecccccCccccccceeEec-ccCCcEEEEEECCCCCEEEEEeCC--------CeEEEEec
Q psy4869 321 KRKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLE-GHGGEIFCSKYHPDGQYIASSGYD--------RQIFIWSV 391 (2435)
Q Consensus 321 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~-gH~~~V~~l~fspdg~~Lasgs~D--------g~I~iwd~ 391 (2435)
.. ...+. .|...+..++|+|||++|+.++.+ ..|++||+
T Consensus 177 --------------~~------------------~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~ 224 (662)
T 3azo_A 177 --------------SA------------------VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARV 224 (662)
T ss_dssp --------------GG------------------SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEE
T ss_pred --------------Cc------------------eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEE
Confidence 00 00111 233456678899999999988755 37999999
Q ss_pred C-Cc--eeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCceEEEEeccCcc--------ccccCcccC
Q psy4869 392 Y-GE--CENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ--TLAVWDLEKGQRIKKMKGHSTF--------VNSCDPVRR 458 (2435)
Q Consensus 392 ~-~~--~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I~vwd~~tg~~v~~l~~h~~~--------v~sv~~~~~ 458 (2435)
. ++ ........+|...+..++|+|||++++++..++ .|.+||+.+++.......+... +..+.|+++
T Consensus 225 ~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 225 TEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp CTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred CCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC
Confidence 8 33 123334455678999999999999777777788 6777777677655444433322 334555566
Q ss_pred CCeEEEEEeCCCeEEEE--eCCCCcceEee-cCcccEEEE-EECCCCCEEEEEecCC--eEEEEECCCCcEEEEEecCCC
Q psy4869 459 GQLLIASGSDDCTVKVW--DPRKKNQAVSM-NNTYQVTSV-AFNDTAECVLTGGIDN--DIKMWDLRTNSVVQKLRGHSD 532 (2435)
Q Consensus 459 ~~~llasgs~Dg~I~vw--D~~~~~~~~~~-~~~~~v~sv-~~sp~g~~l~sgs~dg--~V~lwD~~s~~~v~~l~~h~~ 532 (2435)
+ .+++++.. +.+++| |+..++ +..+ .+...+..+ +++.+.-++++++.+. .|+++|+.+++.......|..
T Consensus 305 ~-~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~ 381 (662)
T 3azo_A 305 G-LIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTD 381 (662)
T ss_dssp S-CEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCC
T ss_pred C-EEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcc
Confidence 5 56777777 999999 555554 3444 344556666 4443322333344443 577778888876554445544
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 533 TVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 533 ~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.+....+.+.....+.+..+..|..|-..
T Consensus 382 ~~~~~~~~~~~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 382 PVDPAYYPEPQIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp SSCGGGSCCCEEEEEECTTSCEEEEEEEC
T ss_pred cCCccccCcceEEEEEcCCCCEEEEEEEC
Confidence 33333333333333333233456555544
No 214
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.55 E-value=1.6e-13 Score=190.19 Aligned_cols=290 Identities=10% Similarity=0.034 Sum_probs=200.8
Q ss_pred EecccCCcEEEEEECCCCCEEEEE--eCCCeEEEEecCCceeeEEEeeCCCCCee---------EEEEc--cCCCE-EEE
Q psy4869 357 LLEGHGGEIFCSKYHPDGQYIASS--GYDRQIFIWSVYGECENIGVMSGHTGAVM---------DLKFS--TDGCH-IFT 422 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~~Lasg--s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~---------~l~~s--~dg~~-L~s 422 (2435)
.+.+|...|..++|++++-+++.. +.++...||...... ....+..|...+. ...|+ |||++ |+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 467899999999999887777877 668899999864322 2345566666666 66676 99998 776
Q ss_pred EeC-CCeEEEEECC--C-CceEEEEec-----cCccccccCcccCCCeEEEEEeCC----------CeEEEEeCCC----
Q psy4869 423 CST-DQTLAVWDLE--K-GQRIKKMKG-----HSTFVNSCDPVRRGQLLIASGSDD----------CTVKVWDPRK---- 479 (2435)
Q Consensus 423 ~s~-Dg~I~vwd~~--t-g~~v~~l~~-----h~~~v~sv~~~~~~~~llasgs~D----------g~I~vwD~~~---- 479 (2435)
++. +..|.+|++. . ++ ...+.. |...+..++|+|++..++.+ +.| ..|.+||+..
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCM-AEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEE-EEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEE-EecccCCCCCCceeEEEEEECCCCccc
Confidence 654 5567777765 2 43 455555 66678889999999766554 444 5899999988
Q ss_pred --CcceEee-cCcccEEEEEECCCCCEEEEEecC--------CeEEEEECC-CC---cEEEEEecCCCCEEEEEEcCCCC
Q psy4869 480 --KNQAVSM-NNTYQVTSVAFNDTAECVLTGGID--------NDIKMWDLR-TN---SVVQKLRGHSDTVTGLSLSPDGS 544 (2435)
Q Consensus 480 --~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~d--------g~V~lwD~~-s~---~~v~~l~~h~~~V~~i~~spdg~ 544 (2435)
+...... .+...+..++|+|||++|+.++.+ ..|++||+. ++ +......+|...+..+.|+|||+
T Consensus 175 ~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 175 DRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp CGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred cCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 5554444 445678889999999999988755 379999999 57 44444456678999999999999
Q ss_pred EEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc----cccCeEEEEEcCCCCEEEEecCCCeEEEE--ECCCCcEEEE
Q psy4869 545 YILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN----FEKNLLRCAWSVSGLYVTAGSADKCVYIW--DTTTRRIAYK 618 (2435)
Q Consensus 545 ~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~----~~~~i~~v~~spdg~~Lasgs~Dg~V~iw--d~~s~~~~~~ 618 (2435)
++++++.|+..+||.+... .++.......+... ....+..++|+|+++++++++. +.++|| |...++ +..
T Consensus 255 l~~~~~~~~~~~l~~~~~~--~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~ 330 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPA--TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVD 330 (662)
T ss_dssp EEEEECTTSSCEEEEECTT--TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEE
T ss_pred EEEEECCCCCeEEEEEECC--CCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEE
Confidence 8888888885444444311 22333222222110 0011456889999999999998 999999 665565 577
Q ss_pred ecCCCCCeeEE-EEcCCCCEEEEEECCCcEEEecCC
Q psy4869 619 LPGHNGSVNDV-QFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 619 l~~h~~~V~~l-~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+..|...+..+ ++.++.-++++++.+....+|.++
T Consensus 331 l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 331 AAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp CCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred ecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEE
Confidence 88888888877 655444455566666555555443
No 215
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.53 E-value=1.1e-13 Score=178.36 Aligned_cols=301 Identities=14% Similarity=0.035 Sum_probs=192.8
Q ss_pred EEEcCCCeEEEEEecCCcC-----EEEEEEcCCCCEEEEEECC---CcEEEEEccCCceeEEEeccCCCEEEEEEccCCC
Q psy4869 1066 IFFLDTFKFFISLYGHKLP-----VLSLDMSYDSTLIATGSGD---RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1066 i~d~~~~~~~~~l~~h~~~-----V~sl~~spdg~~L~Sgs~D---g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
..|..+++.+..+..+... +..++|+|||++|+..... ..|.+||+.+++.......+......+.|+|+++
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 4456677666666554333 6778999999998877543 3688889888765443333332233478999999
Q ss_pred EEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEE-------------------EEEeCCCCEEEEE-----eCC
Q psy4869 1138 YFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLS-------------------LDMSYDSTLIATG-----SGD 1193 (2435)
Q Consensus 1138 ~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~s~dg~~l~sg-----s~D 1193 (2435)
.|+.++.++.|++||+..++...... .+...... +.|+|+++.++.. ..+
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~ 167 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYT------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPT 167 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCC
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEe------cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCc
Confidence 99999999999999998776443322 11111111 3456777766544 356
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEee-CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVP-KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~sp-d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
..|++||+.+++..... .+...+..+.|+| +++.|+..+.++. + ...
T Consensus 168 ~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~----~---------------------------~~~ 215 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPH----D---------------------------LVD 215 (396)
T ss_dssp EEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCS----S---------------------------SCS
T ss_pred ceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCC----C---------------------------CCC
Confidence 68999999988754443 6777899999999 7877776653221 0 000
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC-----CeEEEEEcccce
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD-----TTVKIFFLDTFK 1347 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d-----G~V~v~d~~~~k 1347 (2435)
..|.+|++..... . .+ ........+..++|+|||++|+.++.+ +.|++||+.+++
T Consensus 216 ~~l~~~d~~~~~~--------~----------~l--~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (396)
T 3c5m_A 216 ARMWLVNEDGSNV--------R----------KI--KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE 275 (396)
T ss_dssp CCCEEEETTSCCC--------E----------ES--SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC
T ss_pred ceEEEEECCCCce--------e----------Ee--eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC
Confidence 1233333321000 0 00 000012346778999999998887654 459999998876
Q ss_pred EEEEecCCCCCeEEEEEec-CCCEEEEEe----------------CCCcEEEEeCCCCceEEEeccccc-----------
Q psy4869 1348 FFISLYGHKLPVLSLDMSY-DSTLIATGS----------------GDRTVKVWGLDYGDCHKSLLAHED----------- 1399 (2435)
Q Consensus 1348 ~i~~~~~h~~~V~~la~sp-dg~~L~sGg----------------~Dg~V~iwdl~~gk~~~~~~~h~~----------- 1399 (2435)
........ ... +.|+| ||++|+.++ .+..|++||+.+++.. .+..|..
T Consensus 276 ~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~ 351 (396)
T 3c5m_A 276 NEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQI 351 (396)
T ss_dssp EEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSST
T ss_pred eEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccccC
Confidence 54332211 123 89999 999888765 3478999999988754 3444443
Q ss_pred ceEEEEEeeCCCEEEEEeC-CCcEEEEECC
Q psy4869 1400 SVTGVTFVPKTHYFFTTSK-DGRVKQWDAD 1428 (2435)
Q Consensus 1400 ~V~~laf~P~~~~laSgg~-Dg~V~lWd~~ 1428 (2435)
.+..++|+|++..|+.++. ++...||.++
T Consensus 352 ~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 352 THPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp TCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2677899999988887664 5666666544
No 216
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.53 E-value=2.3e-11 Score=162.60 Aligned_cols=331 Identities=12% Similarity=0.022 Sum_probs=234.9
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc--CCceeEEEeccCCCE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD--YGDCHKSLLAHEDSV 1127 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~--t~~~~~~l~~h~~~V 1127 (2435)
+.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+.... ..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EA 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CC
Confidence 33344445555799999999999999888743 356799999999999999999999999995 888888876533 46
Q ss_pred EEEEEc----cCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEe-ec---cc-ccCeEEEEEeCCCCEEE-EEeCCCcE
Q psy4869 1128 TGVTFV----PKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFIS-LY---GH-KLPVLSLDMSYDSTLIA-TGSGDRTV 1196 (2435)
Q Consensus 1128 ~~v~fs----p~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~-~~---~h-~~~V~~l~~s~dg~~l~-sgs~Dg~V 1196 (2435)
..++|+ |+++++++++ .++.|.++|..+.+.+..+..... .. .| ...+..+..++++..++ ....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 799999 6999888766 458999999999888776642111 00 01 22677888888766544 44567999
Q ss_pred EEEEccCCceeeEe-eccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEee-CCcccccCceEEEEEECCC
Q psy4869 1197 KVWGLDYGDCHKSL-LAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHF-NPNVYLPLQIQVVTGGGDK 1273 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~-~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~-~~~~~~~~~~~lv~g~~d~ 1273 (2435)
.++|....+.+... ........++.|+|++++++++. .++.|.++|+.+.+.+..+.. ...
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~---------------- 386 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT---------------- 386 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS----------------
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC----------------
Confidence 99998875433221 13345677899999999988877 678899999988765443322 110
Q ss_pred eEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-cceeEEee-cCCeEEEEEccc------
Q psy4869 1274 SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-SKLLAVSL-LDTTVKIFFLDT------ 1345 (2435)
Q Consensus 1274 ~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g~~lavgs-~dG~V~v~d~~~------ 1345 (2435)
++.+....+ +.|+ +..++++. .++.|.++|.++
T Consensus 387 --------------------------------------Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~ 427 (567)
T 1qks_A 387 --------------------------------------PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDN 427 (567)
T ss_dssp --------------------------------------BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT
T ss_pred --------------------------------------CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccc
Confidence 011111111 4676 44455553 468999999987
Q ss_pred -ceEEEEecCCCCCeEEEEEecCCCEEEEEeC-------CCcEEEEeCCCC-----c-eEEEec--------ccccceEE
Q psy4869 1346 -FKFFISLYGHKLPVLSLDMSYDSTLIATGSG-------DRTVKVWGLDYG-----D-CHKSLL--------AHEDSVTG 1403 (2435)
Q Consensus 1346 -~k~i~~~~~h~~~V~~la~spdg~~L~sGg~-------Dg~V~iwdl~~g-----k-~~~~~~--------~h~~~V~~ 1403 (2435)
.+.+..+......-.-+..+||+++|.+... .+.|.++|+.+. . .+..+. .....+..
T Consensus 428 ~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (567)
T 1qks_A 428 AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQ 507 (567)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEE
T ss_pred cCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEe
Confidence 7788888865444455778999999988663 469999999876 2 222232 12347899
Q ss_pred EEEeeCCCEE-EEEe----CCCcEEEEECCCceeEEEEe
Q psy4869 1404 VTFVPKTHYF-FTTS----KDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1404 laf~P~~~~l-aSgg----~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++|+|+|..+ +|.. .++.|.++|..+.+.++.++
T Consensus 508 ~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 508 GEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp EEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999999655 4533 37999999999999888776
No 217
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.52 E-value=3.1e-12 Score=157.04 Aligned_cols=239 Identities=11% Similarity=0.208 Sum_probs=181.3
Q ss_pred CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEec------cCccccccCcccCCCeEEEEEe-CCCeEEEE
Q psy4869 403 GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKG------HSTFVNSCDPVRRGQLLIASGS-DDCTVKVW 475 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~------h~~~v~sv~~~~~~~~llasgs-~Dg~I~vw 475 (2435)
++-..+.+++++++++++++...++.|++||.+ ++.+..+.. |...+..+++.+.+..++++.. .++.|.+|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455778999999999988888889999999986 666666642 3345667777434445666554 38899999
Q ss_pred eCCCCcceEeec--CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe--cCCCCEEEEEEcCCCCEEEEEEC
Q psy4869 476 DPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR--GHSDTVTGLSLSPDGSYILSNAM 551 (2435)
Q Consensus 476 D~~~~~~~~~~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~--~h~~~V~~i~~spdg~~las~s~ 551 (2435)
| ..++.+..+. ....+..++++++|+++++...++.|++||.. ++.+..+. .+...+.+|+++++|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 5555555553 33568999999999988877788999999964 56666664 45567899999999998888888
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-eEEEEECCCCcEEEEecCCCC--CeeE
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-CVYIWDTTTRRIAYKLPGHNG--SVND 628 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-~V~iwd~~s~~~~~~l~~h~~--~V~~ 628 (2435)
++.|++||.. .+.+..+..+.. ...+..++++++|+++++...++ .|.+||. +++.+..+..+.. .+.+
T Consensus 184 ~~~i~~~~~~-----g~~~~~~~~~g~--~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~ 255 (286)
T 1q7f_A 184 AHCVKVFNYE-----GQYLRQIGGEGI--TNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 255 (286)
T ss_dssp GTEEEEEETT-----CCEEEEESCTTT--SCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred CCEEEEEcCC-----CCEEEEEccCCc--cCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCccee
Confidence 9999999975 344555543211 13578899999999999988886 9999995 5677776655443 4789
Q ss_pred EEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 629 VQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 629 l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
++|+|+++++++ +.|+.|++|++.
T Consensus 256 i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 256 VALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp EEEETTTEEEEE-ETTTEEEEEECS
T ss_pred EEECCCCcEEEE-CCCCeEEEEEcc
Confidence 999999987776 679999999985
No 218
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=2.5e-12 Score=161.62 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=194.9
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.|.++.|++++..++..+.++.++.|.- .....+..+...+.+++|+++|++++++..++.|.+||.++++.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITA----EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEEC----EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred ccceeeecCCccceeEEeecccCccccc----ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 3566788888877777778889999931 234456677778899999999997778888999999999888766555
Q ss_pred eccCccccccCcccCCCeEEEEEeCC----CeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEec------C
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDD----CTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGGI------D 510 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~D----g~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs~------d 510 (2435)
..+...+.++.+.+++. ++++...+ +.|.+||...+.....+ .....+..++++|+|+++++... .
T Consensus 83 ~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp ECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 45667788899988875 45555555 68999999877654332 23457899999999987776653 3
Q ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcCCCCCCCceEEEEe---CcccccccCeEE
Q psy4869 511 NDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIRPYVPGERCVKVMS---GHQHNFEKNLLR 586 (2435)
Q Consensus 511 g~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~~~~~~~~~v~~~~---~h~~~~~~~i~~ 586 (2435)
+.|+.||..+++... +..+...+.+++|+|||+.|+. .+.++.|.+||++.. ...+..+. .........+..
T Consensus 162 ~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~---g~~~~~~~~~~~~~~~~~~~~~~ 237 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD---GVTIQPFGATIPYYFTGHEGPDS 237 (333)
T ss_dssp EEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT---SSSEEEEEEEEEEECCSSSEEEE
T ss_pred ceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC---CcCcccccceEEEecCCCCCCCc
Confidence 678888877665443 3233446889999999986654 456899999998631 11111110 000000124677
Q ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCC------CeeEEEEcCCCCEEEEEECCC
Q psy4869 587 CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNG------SVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 587 v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~------~V~~l~fspd~~~Lasgs~Dg 645 (2435)
++++++|+++++...++.|.+||. +++.+..+..+.. .+.+++|+|+++.|+.++.++
T Consensus 238 i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 238 CCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred eEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 999999998888888899999998 5677666654433 689999999988777666653
No 219
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=7.1e-12 Score=153.82 Aligned_cols=241 Identities=15% Similarity=0.217 Sum_probs=180.5
Q ss_pred ccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee------CCCCCeeEEEEc-cCCCEEEEEeC-CCeEEE
Q psy4869 360 GHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS------GHTGAVMDLKFS-TDGCHIFTCST-DQTLAV 431 (2435)
Q Consensus 360 gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~------~h~~~V~~l~~s-~dg~~L~s~s~-Dg~I~v 431 (2435)
+|-....+++++++|+++++...++.|++||..... ...+. +|...+..++++ +++..+++... ++.|++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE--EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE--EEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 566778999999999999988899999999987532 22232 345678999994 66655555533 789999
Q ss_pred EECCCCceEEEEec-cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec---CcccEEEEEECCCCCEEEEE
Q psy4869 432 WDLEKGQRIKKMKG-HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN---NTYQVTSVAFNDTAECVLTG 507 (2435)
Q Consensus 432 wd~~tg~~v~~l~~-h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~---~~~~v~sv~~sp~g~~l~sg 507 (2435)
|| .+++.+..+.. +...+..+++.+++. ++++...++.|.+||.. ++....+. ....+..++++++|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 57777776643 345677888888874 66777778999999965 44444442 33468999999999988777
Q ss_pred ecCCeEEEEECCCCcEEEEEecC--CCCEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 508 GIDNDIKMWDLRTNSVVQKLRGH--SDTVTGLSLSPDGSYILSNAMDN-TVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 508 s~dg~V~lwD~~s~~~v~~l~~h--~~~V~~i~~spdg~~las~s~Dg-~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
..++.|++||. +++.+..+..+ ...+.+|+++++|+++++...++ .|.+||.. .+.+..+..+.. ...+
T Consensus 182 ~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-----g~~~~~~~~~~~--~~~~ 253 (286)
T 1q7f_A 182 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-----GQLISALESKVK--HAQC 253 (286)
T ss_dssp GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-----SCEEEEEEESSC--CSCE
T ss_pred CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-----CCEEEEEcccCC--CCcc
Confidence 78999999997 45666677543 36789999999999888888886 99999954 455555554321 1246
Q ss_pred EEEEEcCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 585 LRCAWSVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 585 ~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
..++++|+|+++++ +.|+.|++|+.....
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 78999999987777 569999999986543
No 220
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=6.9e-11 Score=157.96 Aligned_cols=330 Identities=13% Similarity=0.077 Sum_probs=227.2
Q ss_pred CcEEEEec-CCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc--CCceeecccccccceeEE
Q psy4869 897 NLALVSAC-ASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG--AGEILEDIPAHSQELWSV 973 (2435)
Q Consensus 897 g~~la~g~-~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~--sg~~v~~~~~h~~~V~sv 973 (2435)
+.++++.. ++.|.|||..+++.+..+..+..+..+.|+|||++|+++..++.|.+||+. +++++..+..... ...+
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~i 245 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSI 245 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEE
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-Ccee
Confidence 33444433 589999999999999999988888899999999999999999999999995 8888888876443 4789
Q ss_pred EEe----cCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 974 AML----PDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 974 ~~s----~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
+|+ |++ ...+++...++.|.++|....+.... +...... .....+.....+..+.++
T Consensus 246 a~s~~~~pDG---------k~l~v~n~~~~~v~ViD~~t~~~~~~-------i~~~~~~---~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 246 ETSKMEGWED---------KYAIAGAYWPPQYVIMDGETLEPKKI-------QSTRGMT---YDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp EECCSTTCTT---------TEEEEEEEETTEEEEEETTTCCEEEE-------EECCEEC---TTTCCEESCCCEEEEEEC
T ss_pred EEccccCCCC---------CEEEEEEccCCeEEEEECCCCcEEEE-------Eeccccc---cccccccCCCceEEEEEc
Confidence 999 576 12444555579999999654332110 0000000 000001112367889999
Q ss_pred CCCCEEEEEEC-CCcEEEEEcCCCeEEEEE-ecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec----
Q psy4869 1050 PDSKLLAVSLL-DTTVKIFFLDTFKFFISL-YGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA---- 1122 (2435)
Q Consensus 1050 pdg~~Lavg~~-dg~V~i~d~~~~~~~~~l-~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~---- 1122 (2435)
+++..+++... +|.|.++|..+.+.+... ........++.|+|++++|+++. .++.|.++|+.+++.+..+..
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 98877666654 599999998765432221 12334577889999999887765 578999999999988777654
Q ss_pred -cCCCEEEEEEccCCCEEE-EEe-CCCcEEEEeCCC-------cceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1123 -HEDSVTGVTFVPKTHYFF-TTS-KDGRVKQWDADN-------FERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1123 -h~~~V~~v~fsp~~~~l~-s~s-~Dg~V~iwD~~~-------~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
|....-. -++|++..++ +.. .++.|.++|... .+.+..+. .....-..+..+|+++++++...
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~------~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP------ALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE------CSCSCCCCEECCTTCSEEEEECT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe------cCCCCCEEEEeCCCCCeEEEecC
Confidence 3321111 2577755454 443 468999999887 34444432 22233345678999999998763
Q ss_pred -------CCcEEEEEccCC-----cee-eEee--------ccCCCEEEEEEeeCCCEEEEEEC-----CCcEEEEECCCC
Q psy4869 1193 -------DRTVKVWGLDYG-----DCH-KSLL--------AHEDSVTGVTFVPKTHYFFTTSK-----DGRVKQWDADNF 1246 (2435)
Q Consensus 1193 -------Dg~V~iwd~~t~-----~~~-~~~~--------~h~~~V~~i~~spd~~~lvsgs~-----Dg~I~vwD~~~~ 1246 (2435)
.+.|.++|+.+. ... ..+. .....+..+.|+|+|+.+..+.+ ++.|.++|.++.
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2232 12457899999999999888755 789999999998
Q ss_pred ceEEEEe
Q psy4869 1247 ERIVTLH 1253 (2435)
Q Consensus 1247 ~~v~~~~ 1253 (2435)
+.+..+.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 8777665
No 221
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.49 E-value=3.1e-12 Score=160.75 Aligned_cols=241 Identities=13% Similarity=0.177 Sum_probs=186.0
Q ss_pred CCCeeEEEEccCCCEEEEEeCC------------------------CeEEEEECCCCceEEEEe-ccCccccccCcccCC
Q psy4869 405 TGAVMDLKFSTDGCHIFTCSTD------------------------QTLAVWDLEKGQRIKKMK-GHSTFVNSCDPVRRG 459 (2435)
Q Consensus 405 ~~~V~~l~~s~dg~~L~s~s~D------------------------g~I~vwd~~tg~~v~~l~-~h~~~v~sv~~~~~~ 459 (2435)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++......+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999888887777 479999999898876664 344567788888888
Q ss_pred CeEEEEEeCCCeEEEEeCCCCc-ceEeec----------CcccEEEEEECC-CCCEEEEEe-cCCeEEEEECCCCcEEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKN-QAVSMN----------NTYQVTSVAFND-TAECVLTGG-IDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~-~~~~~~----------~~~~v~sv~~sp-~g~~l~sgs-~dg~V~lwD~~s~~~v~~ 526 (2435)
. ++++...++.|++||..... .+..+. +...+..++++| +|+++++.+ .++.|++|| .+++.+..
T Consensus 103 ~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 103 N-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp C-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred C-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 6 77788889999999986542 344332 223688999999 788887776 699999999 67777777
Q ss_pred EecCC----------CCEEEEEEcCC-CCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC----
Q psy4869 527 LRGHS----------DTVTGLSLSPD-GSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV---- 591 (2435)
Q Consensus 527 l~~h~----------~~V~~i~~spd-g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp---- 591 (2435)
+.... ....+|+++|+ |+++++...+++|++||.. .++.+..+.... ....+..++|+|
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~----~G~~~~~~~~~~--~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTD----TKEFVREIKHAS--FGRNVFAISYIPGFLF 254 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETT----TCCEEEEECCTT--TTTCEEEEEEETTEEE
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECC----CCcEEEEEeccc--cCCCcceeeecCCEEE
Confidence 74322 34899999999 7777777789999999987 356666664332 224677889999
Q ss_pred --CCCEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 592 --SGLYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 592 --dg~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+|+.+++...+..|++||..+++.+..+. ++...+..|+++|++.++++...++.|++|+++
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 33333333445689999999999998884 677889999999999888888899999999986
No 222
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.46 E-value=7.6e-12 Score=157.24 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=186.7
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------------------------CcEEEEeCCCcceeEEEEEEEeecccccCeEEEE
Q psy4869 1124 EDSVTGVTFVPKTHYFFTTSKD------------------------GRVKQWDADNFERIVTLHFFISLYGHKLPVLSLD 1179 (2435)
Q Consensus 1124 ~~~V~~v~fsp~~~~l~s~s~D------------------------g~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~ 1179 (2435)
-..+.+|+++++++++++...+ +.|.+||..+++....+. ..+......++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----~~~~~~p~gia 97 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-----KNLFYLPHGLS 97 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-----TTTCSSEEEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-----CCccCCceEEE
Confidence 3578999999999988887776 479999998776543321 23445788999
Q ss_pred EeCCCCEEEEEeCCCcEEEEEccCCc-eeeEe---------eccCCCEEEEEEee-CCCEEEEEE-CCCcEEEEECCCCc
Q psy4869 1180 MSYDSTLIATGSGDRTVKVWGLDYGD-CHKSL---------LAHEDSVTGVTFVP-KTHYFFTTS-KDGRVKQWDADNFE 1247 (2435)
Q Consensus 1180 ~s~dg~~l~sgs~Dg~V~iwd~~t~~-~~~~~---------~~h~~~V~~i~~sp-d~~~lvsgs-~Dg~I~vwD~~~~~ 1247 (2435)
++++|+++++...++.|++||..... .+..+ ..+......|+++| +++++++.+ .++.|++||. ...
T Consensus 98 ~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 98 IDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC
T ss_pred ECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC
Confidence 99999988888888999999986442 45555 23445789999999 788777776 6899999984 333
Q ss_pred eEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC-c
Q psy4869 1248 RIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD-S 1326 (2435)
Q Consensus 1248 ~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd-g 1326 (2435)
.+..+.... .+ ... ....-.....++++|+ |
T Consensus 177 ~~~~~~~~g---------------~~---------------------~~~------------~~~~~~~p~gia~d~~~g 208 (329)
T 3fvz_A 177 FVTQWGEES---------------SG---------------------SSP------------RPGQFSVPHSLALVPHLD 208 (329)
T ss_dssp EEEEECEEC---------------CS---------------------SSC------------CTTEESCEEEEEEETTTT
T ss_pred EEEEeccCC---------------CC---------------------CCC------------CCcccCCCcEEEEECCCC
Confidence 322221000 00 000 0000124678999999 8
Q ss_pred ceeEEeecCCeEEEEEcccceEEEEec--CCCCCeEEEEEec------CCCEEEEEeCCCcEEEEeCCCCceEEEe---c
Q psy4869 1327 KLLAVSLLDTTVKIFFLDTFKFFISLY--GHKLPVLSLDMSY------DSTLIATGSGDRTVKVWGLDYGDCHKSL---L 1395 (2435)
Q Consensus 1327 ~~lavgs~dG~V~v~d~~~~k~i~~~~--~h~~~V~~la~sp------dg~~L~sGg~Dg~V~iwdl~~gk~~~~~---~ 1395 (2435)
..+++...+++|++|+.++++.+..+. .+...+..++++| +|+..++...+..|++|++.+++++..+ .
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~ 288 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR 288 (329)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSS
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC
Confidence 888888899999999999899888885 4556788999999 3333333334568999999999999887 3
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
++-..+.+|+++|++.++++...+++|++|+++.
T Consensus 289 ~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 289 KHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp SCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 6777899999999999999999999999999875
No 223
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.46 E-value=4.8e-12 Score=159.92 Aligned_cols=256 Identities=13% Similarity=0.148 Sum_probs=178.8
Q ss_pred cEEEEEECCCCCEEEEEe---------CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC---C--eE
Q psy4869 364 EIFCSKYHPDGQYIASSG---------YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD---Q--TL 429 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs---------~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D---g--~I 429 (2435)
.+..+++ ||++|+... .++.|.+||+.++... .+ ..+..++|+|||++|+.++.+ + .|
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR--FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE--EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE--Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 4566677 888877642 3678999998765322 22 568899999999999887754 2 48
Q ss_pred EEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC--------------------------CCeEEEEeCCCCcce
Q psy4869 430 AVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD--------------------------DCTVKVWDPRKKNQA 483 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~--------------------------Dg~I~vwD~~~~~~~ 483 (2435)
.+||+.+++.......+. +..+.|+|++..++++... ...|.+||+.+++.+
T Consensus 88 ~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 888998887655544443 8889999999777666533 357999999887763
Q ss_pred EeecCcccEEEEEECCCCCEEEEEecCC---------eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-
Q psy4869 484 VSMNNTYQVTSVAFNDTAECVLTGGIDN---------DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN- 553 (2435)
Q Consensus 484 ~~~~~~~~v~sv~~sp~g~~l~sgs~dg---------~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg- 553 (2435)
..+... .+..++|+|+| +++++..++ .|+++| +++ ...+..+ ..+..+ +|||++|+.++.++
T Consensus 166 ~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 166 EEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp EEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred eeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 333223 78899999999 777776542 455556 554 3444444 556554 99999998877543
Q ss_pred -------cEEEEEcCCCCCCCceEEEEeCcccccccCeEE-EEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCC
Q psy4869 554 -------TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLR-CAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGS 625 (2435)
Q Consensus 554 -------~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~-v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~ 625 (2435)
.|.+|| . ++.......+ ...+.. +.|+ || ++++++.++.++|| +.+++....+ .+.+.
T Consensus 238 ~~~~~~~~l~~~d-~-----~~~~~l~~~~----~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~ 303 (347)
T 2gop_A 238 KYMSEHNKLYIYD-G-----KEVMGILDEV----DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHW 303 (347)
T ss_dssp SCCCSSCEEEEEC-S-----SCEEESSTTC----CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-CSSSE
T ss_pred CCccccceEEEEC-C-----CceEeccccC----CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-cCCCe
Confidence 577777 2 2222222222 234555 8899 88 89999999999999 8777764444 55788
Q ss_pred eeEEEEcCCCCEEEEEECCCcE-EEecCC
Q psy4869 626 VNDVQFHPKEPIIMSASSDKTI-YLGESP 653 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg~I-~vWd~~ 653 (2435)
|.+++|+| .++++++.++.. .+|.++
T Consensus 304 v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 304 IMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999999 688888877765 677654
No 224
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.45 E-value=1.3e-11 Score=155.98 Aligned_cols=264 Identities=10% Similarity=-0.001 Sum_probs=177.7
Q ss_pred CEEEEEEcCCCCEEEEEE---------CCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCC---C--cEE
Q psy4869 1084 PVLSLDMSYDSTLIATGS---------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKD---G--RVK 1149 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs---------~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~D---g--~V~ 1149 (2435)
.+...++ ||+.++... .++.|.+||+.+++... + ..+..+.|+|+|+.|+..+.+ + .|.
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~ 88 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW 88 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence 3566666 777776542 25679999998887533 3 467899999999998877654 2 377
Q ss_pred EEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC---------------------------CcEEEEEcc
Q psy4869 1150 QWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD---------------------------RTVKVWGLD 1202 (2435)
Q Consensus 1150 iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D---------------------------g~V~iwd~~ 1202 (2435)
+||+..++...... +.. +..+.|+|+|+.|+.++.+ ..|++||+.
T Consensus 89 ~~~~~~g~~~~l~~-------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 160 (347)
T 2gop_A 89 VADLETLSSKKILE-------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE 160 (347)
T ss_dssp EEETTTTEEEEEEE-------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT
T ss_pred EEECCCCceEEEEc-------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC
Confidence 88887765433221 223 8999999999988887632 579999999
Q ss_pred CCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccc
Q psy4869 1203 YGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLEL 1282 (2435)
Q Consensus 1203 t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~ 1282 (2435)
+++.+..+.. . .+..+.|+|++ .++++..++. ... . .+...+|.+..
T Consensus 161 ~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~-------~~~-------------~----------~~~~~l~~~d~ 207 (347)
T 2gop_A 161 SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI-------IPQ-------------Y----------FKFWDIYIWED 207 (347)
T ss_dssp TTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS-------SCC-------------S----------SCCEEEEEEET
T ss_pred CCeEEeeecC-C-CcccccCCCCe-EEEEEecccc-------ccc-------------c----------cccccEEEeCC
Confidence 8876455544 3 78899999999 7777765431 000 0 00111121110
Q ss_pred ccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC--------CeEEEEEcccceEEEEecC
Q psy4869 1283 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD--------TTVKIFFLDTFKFFISLYG 1354 (2435)
Q Consensus 1283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d--------G~V~v~d~~~~k~i~~~~~ 1354 (2435)
.. . ..+.. . ..+..+ +|||++|+.++.+ +.|.+|| .++.......
T Consensus 208 ~~-----------------~-~~l~~----~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 208 GK-----------------E-EKMFE----K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp TE-----------------E-EEEEE----E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred Cc-----------------e-EEecc----C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 00 0 00000 0 122233 8999999887754 3677777 6666555566
Q ss_pred CCCCeEE-EEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcE-EEEECC
Q psy4869 1355 HKLPVLS-LDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRV-KQWDAD 1428 (2435)
Q Consensus 1355 h~~~V~~-la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V-~lWd~~ 1428 (2435)
+...+.. +.|+ || ++++++.++.+++| +.+++.... ..+...|.+++|+| .++++++.++.. .||.++
T Consensus 261 ~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~-~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 261 VDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPI-AKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEE-ECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEE-ecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 7778886 9999 98 99999999999999 887776443 34577899999999 677787777765 788876
No 225
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.39 E-value=5.7e-10 Score=137.19 Aligned_cols=278 Identities=9% Similarity=-0.023 Sum_probs=197.3
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQ 438 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~ 438 (2435)
..+...+.+++++++|+++++...++.|.+||.. ..........+...+..++++++|..+++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3456779999999999988877668999999987 322222223456789999999999877777778899999986 44
Q ss_pred eEEEEe--ccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee--cCcccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 439 RIKKMK--GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 439 ~v~~l~--~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
. ..+. .+...+..+.+.+++ .++++...++.|..||. .++..... .....+..++++++|++.++...++.|.
T Consensus 89 ~-~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 165 (299)
T 2z2n_A 89 I-KEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG 165 (299)
T ss_dssp E-EEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred E-EEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence 3 3332 234556778777776 45556666889999998 44433222 2345689999999998877777789999
Q ss_pred EEECCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCC
Q psy4869 515 MWDLRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 515 lwD~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
.||. +++.... +..+...+.+++++++|+++++...++.|.+||.. . + +..+... .....+..++++++|
T Consensus 166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g----~-~~~~~~~--~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS-G----E-ITEFKIP--TPNARPHAITAGAGI 236 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-C----C-EEEEECS--STTCCEEEEEECSTT
T ss_pred EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCC-C----c-EEEEECC--CCCCCceeEEECCCC
Confidence 9999 6665443 33445678999999999977776678899999973 1 2 1222211 112367889999999
Q ss_pred CEEEEecCCCeEEEEECCCCcEEEE-ecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 594 LYVTAGSADKCVYIWDTTTRRIAYK-LPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 594 ~~Lasgs~Dg~V~iwd~~s~~~~~~-l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+++++...++.|.+||. +++.... +..+...+.++++ +++.+.++.. .+.|..++..
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~ 294 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLI 294 (299)
T ss_dssp CEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC
T ss_pred CEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcC
Confidence 97777777899999998 4554322 3456678999999 8887766655 4556655553
No 226
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.39 E-value=4.8e-11 Score=149.90 Aligned_cols=267 Identities=16% Similarity=0.121 Sum_probs=186.4
Q ss_pred cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
..|.++.|++++..++....++.++.| .++....+..+...+.+++|++++++++++..++.|.+||..+++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 456778899888777777888899999 45566677777778899999999997778888999999999876543322
Q ss_pred EEEEeecccccCeEEEEEeCCCCEEEEEeCC----CcEEEEEccCCceeeEee--ccCCCEEEEEEeeCCCEEEEEECC-
Q psy4869 1163 HFFISLYGHKLPVLSLDMSYDSTLIATGSGD----RTVKVWGLDYGDCHKSLL--AHEDSVTGVTFVPKTHYFFTTSKD- 1235 (2435)
Q Consensus 1163 ~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D----g~V~iwd~~t~~~~~~~~--~h~~~V~~i~~spd~~~lvsgs~D- 1235 (2435)
..+...+.+++++++++++++...+ +.|.+||.++++....+. .+...+.++.+.|+++.+++...+
T Consensus 83 ------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 83 ------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp ------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred ------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 1355789999999999888777666 689999998877543332 244578999999998876655431
Q ss_pred -----CcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1236 -----GRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1236 -----g~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+.|..||....+. ..+ .
T Consensus 157 ~~~~~~~l~~~~~~~~~~---------------------------~~~---------------------------~---- 178 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTV---------------------------TPI---------------------------I---- 178 (333)
T ss_dssp TTBCCEEEEEECTTSCCE---------------------------EEE---------------------------E----
T ss_pred ccCCCceEEEEeCCCCEE---------------------------EEe---------------------------e----
Confidence 2233333221110 000 0
Q ss_pred ccccccEEEEEecCCcceeEE-eecCCeEEEEEccc-ceEEE--------EecCCCCCeEEEEEecCCCEEEEEeCCCcE
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAV-SLLDTTVKIFFLDT-FKFFI--------SLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1380 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lav-gs~dG~V~v~d~~~-~k~i~--------~~~~h~~~V~~la~spdg~~L~sGg~Dg~V 1380 (2435)
........++|+|||+.|.+ .+.++.|.+|+++. ++.+. .+.++ ..+..++++++|+++++...++.|
T Consensus 179 -~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v 256 (333)
T 2dg1_A 179 -QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV 256 (333)
T ss_dssp -EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE
T ss_pred -cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE
Confidence 00123567899999986655 45678999999963 33221 12222 467889999999988888888999
Q ss_pred EEEeCCCCceEEEeccccc------ceEEEEEeeCCCEEEEEeCC
Q psy4869 1381 KVWGLDYGDCHKSLLAHED------SVTGVTFVPKTHYFFTTSKD 1419 (2435)
Q Consensus 1381 ~iwdl~~gk~~~~~~~h~~------~V~~laf~P~~~~laSgg~D 1419 (2435)
.+||. +++.+..+..+.. .+.+++|+|++..|..++.+
T Consensus 257 ~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 257 LVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 99998 5666666554432 68999999998666544444
No 227
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.37 E-value=1.1e-10 Score=146.53 Aligned_cols=263 Identities=8% Similarity=0.034 Sum_probs=190.4
Q ss_pred CCCcEEEEEccCCceeEEEe------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1102 GDRTVKVWGLDYGDCHKSLL------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1102 ~Dg~I~vWd~~t~~~~~~l~------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
.++.|.+||.++++....+. ........+.+. +++.+++...++.|.+||..+++.+..+. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-------~~~~p 86 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-------GFTSP 86 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-------CCSSE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-------CCCCC
Confidence 37899999999988765442 122346778774 45555666667999999999988776653 34568
Q ss_pred EEEEEeCCCCEEEEEe-CCCcEEEEEccCCceeeEeeccC-----CCEEEEEEeeCCCEEEEEE--CCCcEEEEECCCCc
Q psy4869 1176 LSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHE-----DSVTGVTFVPKTHYFFTTS--KDGRVKQWDADNFE 1247 (2435)
Q Consensus 1176 ~~l~~s~dg~~l~sgs-~Dg~V~iwd~~t~~~~~~~~~h~-----~~V~~i~~spd~~~lvsgs--~Dg~I~vwD~~~~~ 1247 (2435)
..+++++++ .++++. .++.|.+||..+++....+.... .....+.+ ++..|+++. .++.|.+||+.+.+
T Consensus 87 ~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 87 RYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE
T ss_pred cEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe
Confidence 889998888 555555 88999999999998777665433 14456666 344555555 37888888887765
Q ss_pred eEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1248 RIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1248 ~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
.+..+.. ......++++|+|+
T Consensus 164 ~~~~i~~-----------------------------------------------------------g~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 164 VVDELTI-----------------------------------------------------------GIQPTSLVMDKYNK 184 (328)
T ss_dssp EEEEEEC-----------------------------------------------------------SSCBCCCEECTTSE
T ss_pred EEEEEEc-----------------------------------------------------------CCCccceEEcCCCC
Confidence 4433211 01123567889999
Q ss_pred eeEEeecC----------CeEEEEEcccceEEEEecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE--e
Q psy4869 1328 LLAVSLLD----------TTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS--L 1394 (2435)
Q Consensus 1328 ~lavgs~d----------G~V~v~d~~~~k~i~~~~~h~-~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~--~ 1394 (2435)
++++...+ +.|.++|.++++....+.... .....++|+||+++|+++.. .|.+||..++++... .
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~ 262 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFL 262 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSB
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeee
Confidence 77776654 789999999998877766432 36889999999999988866 999999999886421 1
Q ss_pred cccccceEEEEEee-CCCEEEEE----eCCCcEEEEECCCceeEEEEe
Q psy4869 1395 LAHEDSVTGVTFVP-KTHYFFTT----SKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1395 ~~h~~~V~~laf~P-~~~~laSg----g~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
..+.....+++++| ++.++++. ..++.|.+||.+ .+.+++++
T Consensus 263 ~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 263 EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 12235789999999 56777777 678999999998 77778776
No 228
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.36 E-value=9.1e-11 Score=144.81 Aligned_cols=232 Identities=10% Similarity=0.049 Sum_probs=174.2
Q ss_pred EeeCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 400 VMSGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 400 ~l~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
.+..+.....+++|+++++ .++++..++.|..||..++ ...+..+...+..+.+.+++. ++++...++.|.+||..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEEEcCC
Confidence 3445566788999999998 6777888899999999877 667777777788899988875 55666667899999997
Q ss_pred CCcceEeec-----CcccEEEEEECCCCCEEEE----Ee-------------cCCeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 479 KKNQAVSMN-----NTYQVTSVAFNDTAECVLT----GG-------------IDNDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 479 ~~~~~~~~~-----~~~~v~sv~~sp~g~~l~s----gs-------------~dg~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
+++...... ....++.++++|+|+++++ |. ..+.|+.+|.. ++ +..+..+.....+
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCcc
Confidence 776543322 1234678999999998887 33 13577777766 44 4445566778899
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCCCCCce---EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 537 LSLSPDGSYILSNAMDNTVRIWDIRPYVPGERC---VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 537 i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~---v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
++|+|||+.|++.+.++.|.+||+.. .+.. ...+..+ ...+..++++++|+++++. ++.|.+||.. +
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~----~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNA---RGETEYQGVHFTVE----PGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECS---SSCEEEEEEEECCS----SSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECC---CCcCcCCCeEeeCC----CCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 99999999997777889999999862 1222 2233111 2245578999999977776 8899999986 8
Q ss_pred cEEEEecCCCCCeeEEEE-cCCCCEEEEEECCCcE
Q psy4869 614 RIAYKLPGHNGSVNDVQF-HPKEPIIMSASSDKTI 647 (2435)
Q Consensus 614 ~~~~~l~~h~~~V~~l~f-spd~~~Lasgs~Dg~I 647 (2435)
+.+..+..+.. +++++| .|+++.|++++.++.+
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 88888877777 999999 6899999999887533
No 229
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.35 E-value=1.7e-10 Score=142.45 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=176.2
Q ss_pred EecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECC
Q psy4869 357 LLEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLE 435 (2435)
Q Consensus 357 ~l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~ 435 (2435)
.+..+.....+++|+|+|+ +++++..++.|.+||..+. ...+..+...+..++++++|+++++...++.|.+||..
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 4445666778999999998 7888889999999998765 34556677889999999999987777677899999998
Q ss_pred CCceEEEEecc----CccccccCcccCCCeEEEE----Ee-------------CCCeEEEEeCCCCcceEeecCcccEEE
Q psy4869 436 KGQRIKKMKGH----STFVNSCDPVRRGQLLIAS----GS-------------DDCTVKVWDPRKKNQAVSMNNTYQVTS 494 (2435)
Q Consensus 436 tg~~v~~l~~h----~~~v~sv~~~~~~~~llas----gs-------------~Dg~I~vwD~~~~~~~~~~~~~~~v~s 494 (2435)
+++........ ...++.+.+.+++. ++++ |. ..+.|..+|.. ++...........+.
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG 176 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence 88755443221 23466788888885 4444 22 13466666665 444333455566789
Q ss_pred EEECCCCCEEEEEecCCeEEEEECC-CCcE---EEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceE
Q psy4869 495 VAFNDTAECVLTGGIDNDIKMWDLR-TNSV---VQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCV 570 (2435)
Q Consensus 495 v~~sp~g~~l~sgs~dg~V~lwD~~-s~~~---v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v 570 (2435)
++|+|+|+.+++...++.|++||+. +++. ...+..+.+.+.+|+++++|+++++. ++.|.+||.. ++.+
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-----g~~~ 249 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-----GDEL 249 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-----SCEE
T ss_pred EEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-----CCEE
Confidence 9999999999777778999999987 5554 33344455667889999999976666 8899999975 4555
Q ss_pred EEEeCcccccccCeEEEEE-cCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 571 KVMSGHQHNFEKNLLRCAW-SVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 571 ~~~~~h~~~~~~~i~~v~~-spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
..+..+. . +..++| +|+++.|++++.++ +.-++.++.++
T Consensus 250 ~~~~~~~----~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 250 GRVLTPQ----T-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp EEEECSS----C-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred EEEECCC----C-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 5565443 2 677889 68999999988764 55667766655
No 230
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.34 E-value=1.8e-09 Score=132.58 Aligned_cols=281 Identities=9% Similarity=0.059 Sum_probs=198.1
Q ss_pred cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE-eccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcce
Q psy4869 1080 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFER 1158 (2435)
Q Consensus 1080 ~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~ 1158 (2435)
.+...+.++++.++|+++++...++.|.+||.. ++..... ..+...+..+++.+++.++++...++.|..||.. +.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~- 88 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI- 88 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-
Confidence 455689999999999987766668899999988 6543322 2345679999999999877777778899999976 22
Q ss_pred eEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCCCEEEEEECCCc
Q psy4869 1159 IVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGR 1237 (2435)
Q Consensus 1159 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~~~lvsgs~Dg~ 1237 (2435)
...+. .......+..+++.+++.++++...++.|.+||. +++.... ...+...+.++.+.++++.+++...++.
T Consensus 89 ~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 163 (299)
T 2z2n_A 89 IKEYT----LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNA 163 (299)
T ss_dssp EEEEE----CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred EEEEe----CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCE
Confidence 22221 1224557899999999988887777889999998 5654322 2234557899999998887666656678
Q ss_pred EEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE
Q psy4869 1238 VKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1317 (2435)
Q Consensus 1238 I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 1317 (2435)
|..||. +.+.. . +.+. .....+
T Consensus 164 i~~~~~-~g~~~-~--------------------------~~~~------------------------------~~~~~~ 185 (299)
T 2z2n_A 164 IGRITE-SGDIT-E--------------------------FKIP------------------------------TPASGP 185 (299)
T ss_dssp EEEECT-TCCEE-E--------------------------EECS------------------------------STTCCE
T ss_pred EEEEcC-CCcEE-E--------------------------eeCC------------------------------CCCCcc
Confidence 888876 32211 0 1000 001346
Q ss_pred EEEEecCCcceeEEeecCCeEEEEEcccceEEE-EecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ec
Q psy4869 1318 LCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI-SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LL 1395 (2435)
Q Consensus 1318 ~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~-~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~ 1395 (2435)
..+++.++|+.+++...++.|.+|+. +++... ....+...+..++++++|++.++...++.|.+||. +++.... ..
T Consensus 186 ~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~ 263 (299)
T 2z2n_A 186 VGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQ 263 (299)
T ss_dssp EEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECS
T ss_pred eeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCC
Confidence 68899999987777767889999998 665432 23345567899999999997777767899999998 4554332 34
Q ss_pred ccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1396 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1396 ~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
.+...+.++++ +++.++++.. .+.|..+|.++.
T Consensus 264 ~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 264 IKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp SSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 55567999999 8888887765 567777777653
No 231
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.34 E-value=1.6e-10 Score=161.08 Aligned_cols=280 Identities=11% Similarity=-0.025 Sum_probs=189.2
Q ss_pred CCCCEEEEEECC-C----cEEEEEcCCCeEEEEEe------cCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEEccC
Q psy4869 1050 PDSKLLAVSLLD-T----TVKIFFLDTFKFFISLY------GHKLPVLSLDMSYDSTLIATGSGDR-----TVKVWGLDY 1113 (2435)
Q Consensus 1050 pdg~~Lavg~~d-g----~V~i~d~~~~~~~~~l~------~h~~~V~sl~~spdg~~L~Sgs~Dg-----~I~vWd~~t 1113 (2435)
|+|++++....+ + .+.+.+..+++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889888766533 2 33444443444322221 3445688999999999998766543 899999999
Q ss_pred CceeEEEeccCCCEEEEEEccCCCEEEEEeCCCc----------------EEEEeCCCcceeEEEEEEEeecccccCeEE
Q psy4869 1114 GDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGR----------------VKQWDADNFERIVTLHFFISLYGHKLPVLS 1177 (2435)
Q Consensus 1114 ~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~----------------V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~ 1177 (2435)
++.+.....+ ..+..++|+||++.|+.+..++. |++|++.++.....+ +.....+...+..
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~--v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDIL--CAEFPDEPKWMGG 237 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEE--EECCTTCTTCEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceE--EeccCCCCeEEEE
Confidence 9876643322 22678999999999998887765 999999876532111 0111234556789
Q ss_pred EEEeCCCCEEEEEeC-----CCcEEEEEccC------Cc-eeeEeeccCCCEEEEEEeeCCCEEEEEECCC----cEEEE
Q psy4869 1178 LDMSYDSTLIATGSG-----DRTVKVWGLDY------GD-CHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG----RVKQW 1241 (2435)
Q Consensus 1178 l~~s~dg~~l~sgs~-----Dg~V~iwd~~t------~~-~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg----~I~vw 1241 (2435)
+.|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+++++.|+..+.++ .|.+|
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence 999999999988764 67899999987 53 35566666666655 4788888777666432 36666
Q ss_pred ECCCCce--EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEE
Q psy4869 1242 DADNFER--IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319 (2435)
Q Consensus 1242 D~~~~~~--v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1319 (2435)
|+..... ...+. .......+..
T Consensus 317 d~~~~~~~~~~~l~--------------------------------------------------------~~~~~~~~~~ 340 (710)
T 2xdw_A 317 DFTDPEESKWKVLV--------------------------------------------------------PEHEKDVLEW 340 (710)
T ss_dssp ETTSCCGGGCEEEE--------------------------------------------------------CCCSSCEEEE
T ss_pred eCCCCCcccceecc--------------------------------------------------------CCCCCCeEEE
Confidence 6544321 00000 0000124566
Q ss_pred EEecCCcceeEEeecCCe--EEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEE----eCCCcEEEEeCCCCc
Q psy4869 1320 ARVSPDSKLLAVSLLDTT--VKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG----SGDRTVKVWGLDYGD 1389 (2435)
Q Consensus 1320 ia~spdg~~lavgs~dG~--V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sG----g~Dg~V~iwdl~~gk 1389 (2435)
++|++++..+++...+|. |.+|++.+++.+..+..+.+.+..++++|+++.|+.. ...+.|+.||+.+++
T Consensus 341 ~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 341 VACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 788888888888888885 5566766788777888788889999999999866533 235789999999887
No 232
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.32 E-value=4.3e-10 Score=141.10 Aligned_cols=283 Identities=10% Similarity=0.013 Sum_probs=193.9
Q ss_pred cCCCeEEEEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEe
Q psy4869 322 RKNDEVTVYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVM 401 (2435)
Q Consensus 322 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l 401 (2435)
..++.+.++|.+.......+..... -.........+.+. +++++++...++.|.+||..+... +..+
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n-----------~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i 80 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRAN-----------GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRI 80 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHH-----------SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEE
T ss_pred CCCceEEEEECCCCEEhhhhHhhhc-----------CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEc
Confidence 3477899999886544332211000 00112335566664 345555556689999999876533 2333
Q ss_pred eCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccC-----ccccccCcccCCCeEEEEEe-CCCeEEE
Q psy4869 402 SGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHS-----TFVNSCDPVRRGQLLIASGS-DDCTVKV 474 (2435)
Q Consensus 402 ~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~-----~~v~sv~~~~~~~~llasgs-~Dg~I~v 474 (2435)
. .......+++++++ .++.+. .++.|.+||..+++....+.... .....+.+ ++..++++.. .++.|.+
T Consensus 81 ~-~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~v 156 (328)
T 3dsm_A 81 T-GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILK 156 (328)
T ss_dssp E-CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEE
T ss_pred C-CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEE
Confidence 3 34678999999988 555555 89999999999998887776433 13445555 4556666655 5899999
Q ss_pred EeCCCCcceEeecCcccEEEEEECCCCCEEEEEecC----------CeEEEEECCCCcEEEEEecC-CCCEEEEEEcCCC
Q psy4869 475 WDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGID----------NDIKMWDLRTNSVVQKLRGH-SDTVTGLSLSPDG 543 (2435)
Q Consensus 475 wD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~d----------g~V~lwD~~s~~~v~~l~~h-~~~V~~i~~spdg 543 (2435)
||+.+++....+........++++|+|++++++..+ +.|.+||..+++....+... ......++|+||+
T Consensus 157 iD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 157 IDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp EETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred EECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 999999888777666667889999999977776554 78999999999988777543 2468999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcC-CCCEEEEe----cCCCeEEEEECCCCcEEEE
Q psy4869 544 SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSV-SGLYVTAG----SADKCVYIWDTTTRRIAYK 618 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~sp-dg~~Lasg----s~Dg~V~iwd~~s~~~~~~ 618 (2435)
++|+.+.. .|.+||+......... .+... ......++++| +++++++. ..++.|.+||.. ++.+..
T Consensus 237 ~~lyv~~~--~v~~~d~~t~~~~~~~--~~~~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVEADRVPVRP--FLEFR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CEEEEESS--SEEEEETTCSSCCSSC--SBCCC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred CEEEEEcc--EEEEEECCCCceeeee--eecCC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 99988765 8999998743211100 01100 23578899999 56666666 678999999998 988887
Q ss_pred ecCCCCCeeEEEE
Q psy4869 619 LPGHNGSVNDVQF 631 (2435)
Q Consensus 619 l~~h~~~V~~l~f 631 (2435)
+.- ......++|
T Consensus 308 i~~-G~~P~~~~~ 319 (328)
T 3dsm_A 308 FYV-GIIPGAFCW 319 (328)
T ss_dssp EEE-EESEEEEEE
T ss_pred EEe-ccCcceEEE
Confidence 742 233444554
No 233
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=4.3e-09 Score=133.94 Aligned_cols=286 Identities=10% Similarity=-0.090 Sum_probs=195.8
Q ss_pred EcCCCCEEEEEEC--CC---cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEcc
Q psy4869 1048 VSPDSKLLAVSLL--DT---TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLD 1112 (2435)
Q Consensus 1048 ~spdg~~Lavg~~--dg---~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~ 1112 (2435)
..|+++++++... .+ .|.+||..+++.+..+.....+ .++++||+++|+.+. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4478888888764 22 7899999999998888765555 999999999999886 36789999999
Q ss_pred CCceeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEE-EEEEEeecccccCeEEEEEeC
Q psy4869 1113 YGDCHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVT-LHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1113 t~~~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~-~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
+++.+..+... ......+.|+|++++|+++.. ++.|.++| .+++.... +. ... ++.+.+
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-------~~~---~~~~~~ 174 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-------SPT---CYHIHP 174 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-------CCc---eEEEEe
Confidence 98888776532 123468999999999998874 47899999 88776554 32 111 133445
Q ss_pred CC-CEEEEEeCCCcEEEEEccCCceeeEee-----ccCCCE-EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DS-TLIATGSGDRTVKVWGLDYGDCHKSLL-----AHEDSV-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg-~~l~sgs~Dg~V~iwd~~t~~~~~~~~-----~h~~~V-~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
++ +.+++.+.||.+.++|. +++.+.... ....++ ....+.+++..++..+.++.+.+.|+.......
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v----- 248 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN----- 248 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE-----
Confidence 44 45566778999999999 887653321 111221 234566665555555577788888875432110
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL- 1334 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~- 1334 (2435)
+.-|++..... ............++++||++.+.+...
T Consensus 249 -------------------~~~~~~~~~~~----------------------~~~~~~p~g~~~~~~s~d~~~lyV~~~~ 287 (373)
T 2mad_H 249 -------------------KAPIDALSGGR----------------------KADTWRPGGWQQVAYLKSSDGIYLLTSE 287 (373)
T ss_pred -------------------eeeeeecCCcc----------------------cccceecCceEeEEECCCCCEEEEEecc
Confidence 01122110000 000000122345678999988877653
Q ss_pred ---------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEe
Q psy4869 1335 ---------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1335 ---------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
.+.|.++|.++++.+..+... .....++|+|||+ +++++. .++.|.++|..+++.++.+
T Consensus 288 ~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 288 QSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 358999999999998888643 3578999999999 788887 5899999999999998873
No 234
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.31 E-value=2e-10 Score=139.95 Aligned_cols=212 Identities=10% Similarity=0.068 Sum_probs=171.1
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccC-ccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc--ccE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHS-TFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT--YQV 492 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~-~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~--~~v 492 (2435)
.++.|++++.|+.|++||.++|+.+.++..+. ..+.++.+.|++. +++ +.++.|..||. +++.+..+... ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 45789999999999999999999999998776 4678888899885 444 45788999999 78888888643 578
Q ss_pred EEEEECCCCCEEEEEec-CCeEEEEECCCCcEEEEEec------CCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 493 TSVAFNDTAECVLTGGI-DNDIKMWDLRTNSVVQKLRG------HSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~-dg~V~lwD~~s~~~v~~l~~------h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
.++.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+.+.++|+++++...++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~---- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN---- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT----
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC----
Confidence 89999999999999887 888988886 7887777642 22345567889999999999999999999975
Q ss_pred CCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC------CCeeEEEEcCCCCEEE
Q psy4869 566 GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN------GSVNDVQFHPKEPIIM 639 (2435)
Q Consensus 566 ~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~------~~V~~l~fspd~~~La 639 (2435)
++.+-.+.... ....+...++|++|+++..++.|..+|..+|+.+..+..+. ..+..++..+++.+++
T Consensus 155 -G~~~w~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 155 -GQLLNSVKLSG-----TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -SCEEEEEECSS-----CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -CCEEEEEECCC-----CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 45566665432 34567788999999999999999999999999998886432 2378889999999888
Q ss_pred EEE
Q psy4869 640 SAS 642 (2435)
Q Consensus 640 sgs 642 (2435)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 774
No 235
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.31 E-value=1.9e-10 Score=160.42 Aligned_cols=244 Identities=15% Similarity=0.067 Sum_probs=175.6
Q ss_pred CCCCeeEEEEccCCCEEEEEeCCC-----eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCe-------
Q psy4869 404 HTGAVMDLKFSTDGCHIFTCSTDQ-----TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCT------- 471 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s~s~Dg-----~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~------- 471 (2435)
|...+..++|+|||++|+.+..++ .|++||+.+|+.+.....+. .+..+.|+|++..++.+. .++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~-~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNA-YPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEE-CCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEE-ECCcccccccc
Confidence 445688999999999998776543 89999999998766433332 266789999997766554 4433
Q ss_pred ---------EEEEeCCCCcce--Eeec---CcccEEEEEECCCCCEEEEEec-----CCeEEEEECCC------Cc-EEE
Q psy4869 472 ---------VKVWDPRKKNQA--VSMN---NTYQVTSVAFNDTAECVLTGGI-----DNDIKMWDLRT------NS-VVQ 525 (2435)
Q Consensus 472 ---------I~vwD~~~~~~~--~~~~---~~~~v~sv~~sp~g~~l~sgs~-----dg~V~lwD~~s------~~-~v~ 525 (2435)
|++|++.++... ..+. +...+..+.|+|||++|+.+.. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 999999877632 2222 3445789999999999998765 67899999986 43 456
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 526 KLRGHSDTVTGLSLSPDGSYILSNAMD----NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 526 ~l~~h~~~V~~i~~spdg~~las~s~D----g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
.+..+...+.. .|+|+|..|+..+.+ +.|.+||+.... ......+..+.. ...+..+.|++++.++++...
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~--~~~~~~~~~~~~~~lv~~~~~ 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE--ESKWKVLVPEHE--KDVLEWVACVRSNFLVLCYLH 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCS--SCEEEEEEEETTTEEEEEEEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC--cccceeccCCCC--CCeEEEEEEEcCCEEEEEEEE
Confidence 66667666655 488999988876653 369999987421 112233433321 124667889988888888888
Q ss_pred CCe--EEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEE-E---CCCcEEEecCCC
Q psy4869 602 DKC--VYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSA-S---SDKTIYLGESPL 654 (2435)
Q Consensus 602 Dg~--V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasg-s---~Dg~I~vWd~~~ 654 (2435)
|+. |.+||+.+++.+..+..+.+.|..+.++|+++.|+.. + ..+.|+.||+..
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 884 6677887888888888888889999999998865533 3 247899999863
No 236
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=2.2e-10 Score=138.97 Aligned_cols=238 Identities=8% Similarity=-0.041 Sum_probs=170.2
Q ss_pred CeeEEEEccCCCEEE-EEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 407 AVMDLKFSTDGCHIF-TCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~-s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
...+++++++|+.++ +...++.|.+||..++........+...+..+++.+++. ++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999998666 446788999999765543322223335677788888775 555544 88999999876554322
Q ss_pred e-cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 486 M-NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 486 ~-~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
. .....+..++++++|+++++...++.|.+||..+.........+...+.+|+++++|+++++...++.|.+||...
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-- 180 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES-- 180 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--
Confidence 2 2235689999999999777777789999998766654433333344678999999999777777789999999863
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECC
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~D 644 (2435)
.......... ...+..++++++|+++++...++.|.+||............+...+.++++.++++++++...+
T Consensus 181 --~~~~~~~~~~----~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~ 254 (270)
T 1rwi_B 181 --NNQVVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGN 254 (270)
T ss_dssp --CCEEECCCSS----CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred --CceEeecccC----CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCC
Confidence 2221111111 1357889999999888888889999999987655433322344678999999999988898899
Q ss_pred CcEEEecCCC
Q psy4869 645 KTIYLGESPL 654 (2435)
Q Consensus 645 g~I~vWd~~~ 654 (2435)
+.|++++++.
T Consensus 255 ~~v~~~~~~~ 264 (270)
T 1rwi_B 255 DRVVKLTSLE 264 (270)
T ss_dssp TEEEEECCCG
T ss_pred CEEEEEcCCC
Confidence 9999999873
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.30 E-value=1.6e-07 Score=132.49 Aligned_cols=481 Identities=9% Similarity=0.063 Sum_probs=294.4
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCC---eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceee
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGS---YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~---~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~ 961 (2435)
..|.+|...++|...+ |..+.+..||..+.+...-.. ... .+.++...++|++. +++. +.|.+||.+++++..
T Consensus 88 n~I~~i~~d~~g~lWi-gT~~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lw-i~t~-~gl~~~~~~~~~~~~ 164 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI-GTRDGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLL-ISTP-EGLIMFDIKESKFID 164 (795)
T ss_dssp SCEEEEEECTTSCEEE-EESSCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEE-EEET-TEEEEEETTTTEEEC
T ss_pred cceeEEEECCCCCEEE-EeCCchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEE-EEEC-CceEEEECCCCEEEe
Confidence 4689999999887665 445678999988765432111 111 16677777777644 4555 568899988776543
Q ss_pred ccccc-ccc-eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecccccc
Q psy4869 962 DIPAH-SQE-LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKL 1039 (2435)
Q Consensus 962 ~~~~h-~~~-V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1039 (2435)
-...+ ... |.++...+++ .+..+..++-|..|+.....+.. .. ....
T Consensus 165 ~~~~~~~~~~i~~i~~d~~g-----------~lwigt~~~Gl~~~~~~~~~~~~-----------------~~---~~~~ 213 (795)
T 4a2l_A 165 DSFSTAMHKTIASTLYRQGD-----------QIYIGTSTDGLYTYSITQKTFEK-----------------VI---PILG 213 (795)
T ss_dssp SSSCHHHHTCCEEEEEEETT-----------EEEEEESSSCEEEEETTTCCEEE-----------------CC-------
T ss_pred ccCCCCCCcceEEEEECCCC-----------CEEEEECCCCEEEEeCCCCeEEE-----------------ec---CCCC
Confidence 22211 123 7788777665 56666665557788754322100 00 0012
Q ss_pred CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEEcc
Q psy4869 1040 EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1112 (2435)
Q Consensus 1040 ~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~ 1112 (2435)
...|.++...++|.+.+ |+.++-+.+|+..+.+....... ....|.++...++|.+.+ |..+ -|.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 35688888888777554 55454588999877665433221 135699999988887555 5555 58999987
Q ss_pred CCceeEEEec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE-eecccccCeEEEEEeCCC
Q psy4869 1113 YGDCHKSLLA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-SLYGHKLPVLSLDMSYDS 1184 (2435)
Q Consensus 1113 t~~~~~~l~~-------h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~dg 1184 (2435)
+++....... ....|.++...+++. |..|+.++-|..|+.....- ..+.... ........|.++...++|
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g 368 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDK 368 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTS
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCC
Confidence 7654433211 235799999988776 55677777899998765432 1111000 000124569999988877
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeEeec--------cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeC-
Q psy4869 1185 TLIATGSGDRTVKVWGLDYGDCHKSLLA--------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFN- 1255 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t~~~~~~~~~--------h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~- 1255 (2435)
. |..|+.++-|..||..+++....... ....|.++...++++.|..|+.++-|..||..+.+. ..+...
T Consensus 369 ~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~ 446 (795)
T 4a2l_A 369 N-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRN 446 (795)
T ss_dssp C-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTT
T ss_pred C-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCC
Confidence 5 55677777899999887764332211 235799999888888677788888899999876543 222210
Q ss_pred ----C-ccc---ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1256 ----P-NVY---LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1256 ----~-~~~---~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
. .++ ......+..|+. +.+.+|+......... .. . ..........|.++...++|+
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~-~~-------~-------~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTI-EK-------E-------KDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEEC-CB-------C-------TTCCBCCCCCEEEEEECTTCC
T ss_pred CCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEc-cc-------c-------ccccccCCceEEEEEECCCCC
Confidence 0 000 111234555555 4577777642211000 00 0 000001135688999888887
Q ss_pred eeEEeecCCeEEEEEcccceEEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc---
Q psy4869 1328 LLAVSLLDTTVKIFFLDTFKFFISLY-------GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH--- 1397 (2435)
Q Consensus 1328 ~lavgs~dG~V~v~d~~~~k~i~~~~-------~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h--- 1397 (2435)
..+ |+. +.|..|+.++.+. .+. .....|.++..+++|++.+... + -|..||.++++...-...+
T Consensus 511 lWi-gt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~ 584 (795)
T 4a2l_A 511 LWI-GGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLP 584 (795)
T ss_dssp EEE-EES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCS
T ss_pred EEE-EeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCc
Confidence 555 444 5688899877665 222 1235689999999998666544 3 5778888877654322211
Q ss_pred ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1398 EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1398 ~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
...|.++..++++++.+++ ++.|..||..+.+
T Consensus 585 ~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 585 NNVVYGILEDSFGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp CSCEEEEEECTTSCEEEEE--TTEEEEEETTTTE
T ss_pred hhheEEEEECCCCCEEEEc--CCceEEEcCCCCc
Confidence 3469999999999888766 4568889988644
No 238
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.28 E-value=3e-09 Score=135.42 Aligned_cols=285 Identities=9% Similarity=-0.049 Sum_probs=192.8
Q ss_pred cCCCCEEEEEEC--CC---cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCC
Q psy4869 1091 SYDSTLIATGSG--DR---TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS----------KDGRVKQWDADN 1155 (2435)
Q Consensus 1091 spdg~~L~Sgs~--Dg---~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s----------~Dg~V~iwD~~~ 1155 (2435)
.|+++++++... .. .|.+||..+++.+..+.....+ .++++||++.++++. .++.|.+||..+
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 467777766653 22 7899999999988887654444 999999999999886 367899999998
Q ss_pred cceeEEEEEE-EeecccccCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCC-CEEE
Q psy4869 1156 FERIVTLHFF-ISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKT-HYFF 1230 (2435)
Q Consensus 1156 ~~~~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~sgs~--Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~-~~lv 1230 (2435)
.+....+... .....+......+.++|||++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ +.++
T Consensus 107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~ 181 (373)
T 2mad_H 107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFY 181 (373)
T ss_pred CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEE
Confidence 7776665411 000001123458899999999999874 57899999 99988777 5322 1 24455654 4566
Q ss_pred EEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 1231 TTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1310 (2435)
Q Consensus 1231 sgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1310 (2435)
+.+.||.+.++|. ..+.+........ + ..
T Consensus 182 ~~~~dg~~~~vd~-~g~~~~~~~~~~~--------------------~-~~----------------------------- 210 (373)
T 2mad_H 182 LLCAQGGLAKTDH-AGGAAGAGLVGAM--------------------L-TA----------------------------- 210 (373)
T ss_pred EEcCCCCEEEEEC-CCcEEEEEecccc--------------------c-cC-----------------------------
Confidence 6778999999988 6554322110000 0 00
Q ss_pred ccccccEEEEEecCCcceeEEeecCCeEEEEEcccc--eEEEEecC----------CCCCeEEEEEecCCCEEEEEeC--
Q psy4869 1311 LKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYG----------HKLPVLSLDMSYDSTLIATGSG-- 1376 (2435)
Q Consensus 1311 ~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~--k~i~~~~~----------h~~~V~~la~spdg~~L~sGg~-- 1376 (2435)
.........+.+++..++..+.+|.+.++|+... +.+..+.. .......++++||++.|+.+..
T Consensus 211 --~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~ 288 (373)
T 2mad_H 211 --AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ 288 (373)
T ss_pred --CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccC
Confidence 0000112345566655555557788888888654 22222221 1223445789999998887654
Q ss_pred --------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEEEe-CCCcEEEEECCCceeEEEE
Q psy4869 1377 --------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1377 --------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg-~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++.|.++|..+++.++.+... ....+++|+||++ +|+++. .++.|.+||..+.+.++.+
T Consensus 289 ~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 289 SAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999998888533 3589999999998 777777 5899999999999988873
No 239
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.28 E-value=7.1e-11 Score=164.27 Aligned_cols=278 Identities=13% Similarity=0.032 Sum_probs=181.9
Q ss_pred cCCCCEEEEEECCC---cEEEE--EcCCCeEEEEEe------cCCcCEEEEEEcCCCCEEEE-----EECCCcEEEEEcc
Q psy4869 1049 SPDSKLLAVSLLDT---TVKIF--FLDTFKFFISLY------GHKLPVLSLDMSYDSTLIAT-----GSGDRTVKVWGLD 1112 (2435)
Q Consensus 1049 spdg~~Lavg~~dg---~V~i~--d~~~~~~~~~l~------~h~~~V~sl~~spdg~~L~S-----gs~Dg~I~vWd~~ 1112 (2435)
+|+|++++....++ .-.+| +...++....+. +|...+.+++|||||++|+. |+.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 37899888776543 34444 444444333322 46667999999999999883 4445689999999
Q ss_pred CCceeEEEeccCCCE--EEEEEccCCCEEEEEeCCCc-------------EEEEeCCCcceeEEEEEEEeecccccCeEE
Q psy4869 1113 YGDCHKSLLAHEDSV--TGVTFVPKTHYFFTTSKDGR-------------VKQWDADNFERIVTLHFFISLYGHKLPVLS 1177 (2435)
Q Consensus 1113 t~~~~~~l~~h~~~V--~~v~fsp~~~~l~s~s~Dg~-------------V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~ 1177 (2435)
+++.+. ..+...+ ..++|+||++.|+.++.|.. |++|++.++.....+ +.....+...+..
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~l--v~~~~~~~~~~~~ 231 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTV--VHERTGDPTTFLQ 231 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEE--EECCCCCTTCEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceE--EEecCCCCEEEEE
Confidence 988641 1111222 68999999999999988776 999999876532111 1112234567889
Q ss_pred EEEeCCCCEEEEEeCCC----cEEEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEEC----CCcEEEEECCCCce-
Q psy4869 1178 LDMSYDSTLIATGSGDR----TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSK----DGRVKQWDADNFER- 1248 (2435)
Q Consensus 1178 l~~s~dg~~l~sgs~Dg----~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~----Dg~I~vwD~~~~~~- 1248 (2435)
+.|+|||++|+.++.++ .|++||..+++ ...+..+...+....+ +++. |+..+. ++.|.+||+.....
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~ 308 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA 308 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc
Confidence 99999999998877665 67777766555 4455556666666666 5666 444442 35566666543321
Q ss_pred -EEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc
Q psy4869 1249 -IVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1327 (2435)
Q Consensus 1249 -v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~ 1327 (2435)
...+. .......+..++++ ++.
T Consensus 309 ~~~~l~--------------------------------------------------------~~~~~~~l~~~~~~-~~~ 331 (695)
T 2bkl_A 309 SWKEIV--------------------------------------------------------PEDSSASLLSVSIV-GGH 331 (695)
T ss_dssp GCEEEE--------------------------------------------------------CCCSSCEEEEEEEE-TTE
T ss_pred CCeEEe--------------------------------------------------------cCCCCCeEEEEEEE-CCE
Confidence 00000 00002235566777 677
Q ss_pred eeEEeecCCeEEEEEcc-cceEEEEecCC-CCCeEEEEEecCCCEEEE----EeCCCcEEEEeCCCCce
Q psy4869 1328 LLAVSLLDTTVKIFFLD-TFKFFISLYGH-KLPVLSLDMSYDSTLIAT----GSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1328 ~lavgs~dG~V~v~d~~-~~k~i~~~~~h-~~~V~~la~spdg~~L~s----Gg~Dg~V~iwdl~~gk~ 1390 (2435)
.+++...+|..+||.++ .++....+..+ .+.+..++++||++.|+. ....+.|++||+.+++.
T Consensus 332 lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 332 LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 88888899988888765 45555666655 567788899999987763 33458899999998874
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.27 E-value=3.4e-07 Score=129.19 Aligned_cols=525 Identities=9% Similarity=0.069 Sum_probs=292.0
Q ss_pred CCceEEEEEeCCCCcEEEEecCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcCCeEEEE
Q psy4869 23 NCNVVFVTLKNQEGRFLATGASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTNGSLKTF 102 (2435)
Q Consensus 23 ~~~v~~~~~~~~~g~~lasg~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~G~i~i~ 102 (2435)
+.+.+...+..++|++.+... +.+.+||..+.+....... . ......|.++...++| .+.++.. +-+..|
T Consensus 86 ~~n~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~~~~~-~------~~~~~~i~~i~~d~~g-~lwi~t~-~gl~~~ 155 (795)
T 4a2l_A 86 ANDISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQNFFYE-K------NGKHLQVNGIEEISPE-QLLISTP-EGLIMF 155 (795)
T ss_dssp SCSCEEEEEECTTSCEEEEES-SCEEEEETTTTEEEEECCE-E------TTEECCCCEEEEEETT-EEEEEET-TEEEEE
T ss_pred cccceeEEEECCCCCEEEEeC-CchheeCCCCCeEEecccc-c------cCCCceEEEEEECCCC-CEEEEEC-CceEEE
Confidence 344444444456787666554 5689999875543221110 0 0000115677777777 4555655 458889
Q ss_pred ECCCCCeEEEecCC-CCC-EEEEEEcCCCCEEEEEeCCCCEEEEEccCCeeEEE-EecCCCcEEEEEEeecCCCcEEEEE
Q psy4869 103 SLDTTDVISTFTGH-KSA-ITVIQYDPLGHRLATGSKDTDIVLWDVVAECGLHR-LSGHKGVITDIRFMSQPGHHFVVSS 179 (2435)
Q Consensus 103 d~~~~~~~~~l~gH-~~~-V~~l~f~p~g~~laSgs~Dg~I~iWd~~~~~~~~~-l~gH~~~V~~v~~~~~~~~~~l~S~ 179 (2435)
+..+++......++ ... |.++...++|.+.+ |+.++-|..||..+.+.... ...+...|.++... .++.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~~g~lwig- 231 (795)
T 4a2l_A 156 DIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQ--SPTRIWVA- 231 (795)
T ss_dssp ETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEE--ETTEEEEE-
T ss_pred ECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEc--CCCCEEEE-
Confidence 98776443221111 123 88898888776555 66665689999776653322 12235678888764 34555554
Q ss_pred eCCCcEEEEeccCCcccccccc-------ccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhcce
Q psy4869 180 AKDTFVKIWDADTGDCFKTMAA-------HLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQ 252 (2435)
Q Consensus 180 s~Dg~I~iWd~~tg~~~~~~~~-------h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~ 252 (2435)
+.++-+.+||..+++....... ....|+++...++|.+ ..|+.+ -|.+||........
T Consensus 232 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~------------- 296 (795)
T 4a2l_A 232 TEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFAS------------- 296 (795)
T ss_dssp EBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEE-------------
T ss_pred ECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEE-------------
Confidence 4444488999887754322111 2356888887766654 445555 58888876432110
Q ss_pred eeccc-CCCCc---eeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEE
Q psy4869 253 LLLSE-DEPDL---TVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVT 328 (2435)
Q Consensus 253 ~~~~~-~~~~~---~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~ 328 (2435)
+.... ....+ .+..+... ..| ..| ++...+.+.
T Consensus 297 ~~~~~~~~~~l~~~~i~~i~~D--------~~g-~lW----------------------------------igt~~~Gl~ 333 (795)
T 4a2l_A 297 YSSNPVENGSLSQRSVRSIFMD--------SQG-GMW----------------------------------LGTYFGGLN 333 (795)
T ss_dssp ECCCTTSTTSCSSSCEEEEEEC--------TTS-CEE----------------------------------EEESSSCEE
T ss_pred EecCCCCCCCCCCCcEEEEEEe--------CCc-CEE----------------------------------EEECCCCeE
Confidence 00000 00000 01111000 000 001 011223344
Q ss_pred EEeCccceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee------
Q psy4869 329 VYDREKNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS------ 402 (2435)
Q Consensus 329 i~d~~~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~------ 402 (2435)
.++......... ..... + -.-....|.++...++|++. .|+.++-|..||............
T Consensus 334 ~~~~~~~~~~~~-~~~~~-------~---~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 401 (795)
T 4a2l_A 334 YYHPIRNRFKNI-RNIPY-------K---NSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESAR 401 (795)
T ss_dssp EECGGGGSSEEE-CCCTT-------S---SSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------
T ss_pred EeCCCcccceEE-cCCCC-------C---CCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCccc
Confidence 444332211000 00000 0 00124569999999888754 477777899998764321111100
Q ss_pred -CCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe----ccCccccccCcccCCCeEEEEEeCCCeEEEEeC
Q psy4869 403 -GHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK----GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDP 477 (2435)
Q Consensus 403 -~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~----~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~ 477 (2435)
.....|.++...+++..|..|+.++-|.+||..+++...... .+...|.++...+++..++. +. +-+.+||.
T Consensus 402 ~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig--t~-~Gl~~~~~ 478 (795)
T 4a2l_A 402 GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG--TL-SALVRFNP 478 (795)
T ss_dssp CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE--ES-SCEEEEET
T ss_pred CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE--ec-CceeEEeC
Confidence 124679999998888767888888889999998876443321 12345666665555654443 33 45888998
Q ss_pred CCCcceEeec-------CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEe-------cCCCCEEEEEEcCCC
Q psy4869 478 RKKNQAVSMN-------NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLR-------GHSDTVTGLSLSPDG 543 (2435)
Q Consensus 478 ~~~~~~~~~~-------~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~-------~h~~~V~~i~~spdg 543 (2435)
.+++...... ....|.++...++|++.+. +. +.|..||..+++. .+. .+...|.+|...++|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG 554 (795)
T ss_dssp TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred CCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence 7765433221 1356899999999886554 44 6689999887765 332 234579999999999
Q ss_pred CEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCC
Q psy4869 544 SYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHN 623 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~ 623 (2435)
+..++. .. -|..||... .....+..........+.++...++|++.+++ ++-|..||.++++.. .+..+.
T Consensus 555 ~lWigT-~~-Gl~~~d~~~-----~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~d 624 (795)
T 4a2l_A 555 IIWVGT-RE-GFYCFNEKD-----KQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESD 624 (795)
T ss_dssp CEEEEE-SS-CEEEEETTT-----TEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGG
T ss_pred CEEEEe-CC-CceeECCCC-----CcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcC
Confidence 865544 34 577888652 22333432222223467888888888877666 355788998877653 332221
Q ss_pred ----CCe--eEEEEcCCCCEEEEEECCCcEEE
Q psy4869 624 ----GSV--NDVQFHPKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 624 ----~~V--~~l~fspd~~~Lasgs~Dg~I~v 649 (2435)
..+ .++...++|. |..|+.+|.+++
T Consensus 625 Gl~~~~f~~~~~~~~~~G~-l~~g~~~Gl~~~ 655 (795)
T 4a2l_A 625 GLQSNQFNTASYCRTSVGQ-MYFGGINGITTF 655 (795)
T ss_dssp TCSCSCEEEEEEEECTTSC-EEEEETTEEEEE
T ss_pred CCccccCccCceeECCCCe-EEEecCCceEEE
Confidence 222 4666777775 455677775553
No 241
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.27 E-value=1e-09 Score=137.58 Aligned_cols=303 Identities=12% Similarity=0.008 Sum_probs=201.9
Q ss_pred EEcCCCCEEEEEEC-----CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEc
Q psy4869 1047 RVSPDSKLLAVSLL-----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGL 1111 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~-----dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~ 1111 (2435)
...|+++.+++... ++.|.++|..+++.+..+.....+ . ++++|||++|+++. .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 45689999999986 578999999999999999866666 4 99999999888765 3678999999
Q ss_pred cCCceeEEEeccC-------CCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1112 DYGDCHKSLLAHE-------DSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1112 ~t~~~~~~l~~h~-------~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
.+++.+..+.... .....++|+||+++++++.. ++.|.++|+.+.+.+..+.. .+ . ...+..
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v----~g----~-~~~~P~ 187 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV----PD----C-YHIFPT 187 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC----CS----E-EEEEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC----CC----c-ceeecC
Confidence 9999988875321 24567999999999998874 68999999999988777641 11 1 122223
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeecc----CCCEE-EEEEe-eCCCEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAH----EDSVT-GVTFV-PKTHYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h----~~~V~-~i~~s-pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
..+.+++.+.||.+.+.++.. ++.......+ ..++. ...|. +++++++ .+.+|.|.+.|........
T Consensus 188 g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v----- 261 (386)
T 3sjl_D 188 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF----- 261 (386)
T ss_dssp ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE-----
T ss_pred CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee-----
Confidence 445677777888888888876 5542211111 11221 13454 3554333 4556777777775433210
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL- 1334 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~- 1334 (2435)
+.-|++.... . .. ... ....+..++++|+++.+.+...
T Consensus 262 -------------------~~~~~~~~~~------~----~~---~g~---------~p~g~q~~a~~~~~~~lyV~~~~ 300 (386)
T 3sjl_D 262 -------------------LPAVEALTEA------E----RA---DGW---------RPGGWQQVAYHRALDRIYLLVDQ 300 (386)
T ss_dssp -------------------CCCEESSCHH------H----HH---TTE---------EECSSSCEEEETTTTEEEEEEEE
T ss_pred -------------------ecceeccccc------c----cc---ccc---------cCCCcceeeECCCCCeEEEEecc
Confidence 0001100000 0 00 000 0011123566888888887653
Q ss_pred ---------CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEE-eCCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1335 ---------DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATG-SGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1335 ---------dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sG-g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
.++|.++|.++++.+..+.... .+..|++++|++ +|++. ..++.|.++|..+++.++.++.-. .-+.
T Consensus 301 ~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~-~p~~ 378 (386)
T 3sjl_D 301 RDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG-HGPQ 378 (386)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC-SSCC
T ss_pred ccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC-CCce
Confidence 2579999999999988887433 677899999997 66665 558999999999999998876332 2345
Q ss_pred EEEeeC
Q psy4869 1404 VTFVPK 1409 (2435)
Q Consensus 1404 laf~P~ 1409 (2435)
|.+++|
T Consensus 379 l~~s~d 384 (386)
T 3sjl_D 379 VITTAD 384 (386)
T ss_dssp EEEECC
T ss_pred eEECCc
Confidence 666655
No 242
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.25 E-value=4.9e-11 Score=165.85 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=169.5
Q ss_pred cccCCcEEEEEECCCCCEEE-----EEeCCCeEEEEecCCceeeEEEeeCCCCCe--eEEEEccCCCEEEEEeCCCe---
Q psy4869 359 EGHGGEIFCSKYHPDGQYIA-----SSGYDRQIFIWSVYGECENIGVMSGHTGAV--MDLKFSTDGCHIFTCSTDQT--- 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~La-----sgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V--~~l~~s~dg~~L~s~s~Dg~--- 428 (2435)
.+|...+..++|+|||++|| .|+.+..|++||+.++.... ..+...+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 36777899999999999998 44455789999998754320 1122223 68999999999999998776
Q ss_pred ----------EEEEECCCCc----eEEEEeccCccccccCcccCCCeEEEEEeCC-C--eEEEEeCCCCcceEeecCccc
Q psy4869 429 ----------LAVWDLEKGQ----RIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-C--TVKVWDPRKKNQAVSMNNTYQ 491 (2435)
Q Consensus 429 ----------I~vwd~~tg~----~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-g--~I~vwD~~~~~~~~~~~~~~~ 491 (2435)
|++|++.+++ .+.....|...+..+.|+|++..++++...+ + .|.+||...+.......+...
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 273 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGA 273 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSC
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCc
Confidence 9999998876 3333344556777889999998777665544 2 677777655554444444445
Q ss_pred EEEEEECCCCCEEEEEe---cCCeEEEEECCCCcE--EEEE-ecC-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 492 VTSVAFNDTAECVLTGG---IDNDIKMWDLRTNSV--VQKL-RGH-SDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 492 v~sv~~sp~g~~l~sgs---~dg~V~lwD~~s~~~--v~~l-~~h-~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
+....+ ++|++++... .++.|.+||+.+++. ...+ ..+ ...+..++|+ ++.++++...|+..+||.+..
T Consensus 274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-- 349 (695)
T 2bkl_A 274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-- 349 (695)
T ss_dssp CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET--
T ss_pred eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC--
Confidence 556666 5666444443 258899999988753 2333 333 4568889998 777888899999999997753
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEE----ecCCCeEEEEECCCCcE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA----GSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las----gs~Dg~V~iwd~~s~~~ 615 (2435)
.++....+..+. ...+..+.++|+++.|+. ....+.|++||+.+++.
T Consensus 350 -~g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 350 -KGKPVRTVQLPG---VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp -TCCEEEECCCSS---SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred -CCCeeEEecCCC---CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233444443321 124566788999987773 33457899999998874
No 243
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.25 E-value=2.4e-10 Score=138.59 Aligned_cols=243 Identities=11% Similarity=0.050 Sum_probs=172.1
Q ss_pred CEEEEEEccCCCEEE-EEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCC
Q psy4869 1126 SVTGVTFVPKTHYFF-TTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYG 1204 (2435)
Q Consensus 1126 ~V~~v~fsp~~~~l~-s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~ 1204 (2435)
...++++++++++++ +...++.|.+||........ + ...+...+.++++.++++++++.. ++.|.+||....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~-----~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-L-----PFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-C-----CCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-E-----eeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc
Confidence 678999999998666 44678899999976543211 1 112335678899999998665555 889999998765
Q ss_pred ceeeEee-ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccc
Q psy4869 1205 DCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELV 1283 (2435)
Q Consensus 1205 ~~~~~~~-~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~ 1283 (2435)
.. ..+. .....+.++.+.++++.+++...++.|.+||......... .
T Consensus 98 ~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~----------------------------~--- 145 (270)
T 1rwi_B 98 NQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL----------------------------P--- 145 (270)
T ss_dssp CC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC----------------------------C---
T ss_pred eE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee----------------------------c---
Confidence 43 3332 3335789999999988666666677788776543221100 0
Q ss_pred cccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEE
Q psy4869 1284 SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLD 1363 (2435)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la 1363 (2435)
.........++++++|+.+++...++.|.+|+.+..........+...+..|+
T Consensus 146 ---------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~ 198 (270)
T 1rwi_B 146 ---------------------------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIA 198 (270)
T ss_dssp ---------------------------CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEE
T ss_pred ---------------------------cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEE
Confidence 00011345688999999777777789999999887665544444446789999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1364 MSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1364 ~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
++++|.++++...++.|.+|+............+-..+.+|+++|+++++++...++.|.++++...++++
T Consensus 199 ~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 199 VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSCC
T ss_pred ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccccC
Confidence 99999888888888999999997765543333344578999999999999999999999999999876553
No 244
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.24 E-value=1e-08 Score=125.98 Aligned_cols=276 Identities=10% Similarity=-0.003 Sum_probs=193.3
Q ss_pred cCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceE
Q psy4869 361 HGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 361 H~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v 440 (2435)
....+.++.+.++|+++++...++.|.+||.... .....+..+...+..+++++++..+++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGR-IKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCc-eEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 4567889999999998888778899999998732 2222233445789999999999877777668899999987 6543
Q ss_pred EE-EeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-ec-CcccEEEEEECCCCCEEEEEecCCeEEEEE
Q psy4869 441 KK-MKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-MN-NTYQVTSVAFNDTAECVLTGGIDNDIKMWD 517 (2435)
Q Consensus 441 ~~-l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD 517 (2435)
.. +......+..+.+.+++. ++++...++.|..||.. ++.... .. ....+..++++++|++.++...++.|..||
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 173 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT 173 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence 22 222335567777777664 55556667899999987 544322 22 345789999999999666666678999999
Q ss_pred CCCCcEEEE-EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEE
Q psy4869 518 LRTNSVVQK-LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYV 596 (2435)
Q Consensus 518 ~~s~~~v~~-l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~L 596 (2435)
. +++.... +..+...+.+++++++|+..++....+.|.+||.. .+... +... .....+..+++.++|++.
T Consensus 174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-----g~~~~-~~~~--~~~~~~~~i~~d~~g~l~ 244 (300)
T 2qc5_A 174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-----GEISE-YDIP--TPNARPHAITAGKNSEIW 244 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-----CCEEE-EECS--STTCCEEEEEECSTTCEE
T ss_pred C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-----CcEEE-EECC--CCCCCceEEEECCCCCEE
Confidence 8 5555432 22445678999999999877776677889999973 22222 2111 112357889999999977
Q ss_pred EEecCCCeEEEEECCCCcEEE-EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 597 TAGSADKCVYIWDTTTRRIAY-KLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 597 asgs~Dg~V~iwd~~s~~~~~-~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
++...++.|..||. +++... .+..+...+.++++.+++.+.++.. . .|..++.
T Consensus 245 v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 245 FTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred EeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 77777899999998 455432 2344556789999999998666554 4 5555543
No 245
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.23 E-value=1.1e-09 Score=133.47 Aligned_cols=197 Identities=10% Similarity=0.027 Sum_probs=157.4
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEecc-CCCE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSV 1127 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~-~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V 1127 (2435)
..+++|++++.++.|.+||.++++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +|+.+..+..+ ...+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 346889999999999999999999999998776 4788999999999888 45788999999 89999998865 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce
Q psy4869 1128 TGVTFVPKTHYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1128 ~~v~fsp~~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~ 1206 (2435)
..+.+.++++.+++.+. ++.|..+|. +++.+..+........+......+++.++|+++++...++.|..||.+ |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999998887 778888885 566666554211111222345566788999999999999999999998 998
Q ss_pred eeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEE
Q psy4869 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1252 (2435)
Q Consensus 1207 ~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~ 1252 (2435)
+..+..+ ....++...++++.++++..+++|..+|..+++.+..+
T Consensus 158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~ 202 (276)
T 3no2_A 158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV 202 (276)
T ss_dssp EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence 8888654 44566778889999998888889999998877665444
No 246
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.18 E-value=2.3e-08 Score=122.75 Aligned_cols=278 Identities=10% Similarity=0.059 Sum_probs=194.7
Q ss_pred CCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEE-EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee
Q psy4869 1081 HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1159 (2435)
Q Consensus 1081 h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~-l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~ 1159 (2435)
....+.++++.++|+++++...++.|.+||.. ++.... +..+...+..+++.++++++++...++.|..||.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~- 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF- 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-
Confidence 44578999999999988877678999999988 654432 22334678999999999877776667899999987 432
Q ss_pred EEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE-eeccCCCEEEEEEeeCCCEEEEEECCCcE
Q psy4869 1160 VTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLAHEDSVTGVTFVPKTHYFFTTSKDGRV 1238 (2435)
Q Consensus 1160 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~-~~~h~~~V~~i~~spd~~~lvsgs~Dg~I 1238 (2435)
..+. .......+.++++.++++++++...++.|..||.. ++.... +......+.++.+.++++.+++...++.|
T Consensus 95 ~~~~----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 95 TEYP----LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEEE----CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EEec----CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 2221 12234678999999999887777668899999988 664422 22345678999999988855555456778
Q ss_pred EEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEE
Q psy4869 1239 KQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1239 ~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
..||. ..+.. .+.+. .....+.
T Consensus 170 ~~~~~-~g~~~---------------------------~~~~~------------------------------~~~~~~~ 191 (300)
T 2qc5_A 170 GRITN-TGKLE---------------------------EYPLP------------------------------TNAAAPV 191 (300)
T ss_dssp EEECT-TCCEE---------------------------EEECS------------------------------STTCCEE
T ss_pred EEECC-CCcEE---------------------------EeeCC------------------------------CCCCCcc
Confidence 77776 22211 11100 0013467
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ecc
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFIS-LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLA 1396 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~-~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~~ 1396 (2435)
.+++.++|+.+++....+.|.+|+. +++.... +..+...+..++++++|++.++...++.|..|+. +++.... +..
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~ 269 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQT 269 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCS
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCc
Confidence 8889999987777667788999998 4443332 3345567899999999997777767899999998 4554432 333
Q ss_pred cccceEEEEEeeCCCEEEEEeCCCcEEEEECC
Q psy4869 1397 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1428 (2435)
Q Consensus 1397 h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~ 1428 (2435)
....+.++++++++.++++.. . .|..+|.+
T Consensus 270 ~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 270 ENAEPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp TTCCCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred cCCccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 456789999999998777655 4 67766654
No 247
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.18 E-value=3e-09 Score=133.36 Aligned_cols=282 Identities=12% Similarity=0.042 Sum_probs=198.0
Q ss_pred EEEccCCCEEEEEeC-----CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----------CCC
Q psy4869 1130 VTFVPKTHYFFTTSK-----DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDR 1194 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~-----Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----------~Dg 1194 (2435)
....|+++.+++... ++.|.++|..+.+.+..+. ....+ . +.++|||++++++. .++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~------vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~ 109 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------GGFLP-N-PVVADDGSFIAHASTVFSRIARGERTD 109 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------ECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE------CCCCC-c-EEECCCCCEEEEEcccccccccCCCCC
Confidence 445688988888875 6799999999988877764 22334 3 99999999998875 367
Q ss_pred cEEEEEccCCceeeEeeccC-------CCEEEEEEeeCCCEEEEEEC--CCcEEEEECCCCceEEEEeeCCc--ccccCc
Q psy4869 1195 TVKVWGLDYGDCHKSLLAHE-------DSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFNPN--VYLPLQ 1263 (2435)
Q Consensus 1195 ~V~iwd~~t~~~~~~~~~h~-------~~V~~i~~spd~~~lvsgs~--Dg~I~vwD~~~~~~v~~~~~~~~--~~~~~~ 1263 (2435)
.|.+||..+++.+..+.-.. ..-..+.++||+++++++.. ++.|.++|+.+.+.+.++..... .+....
T Consensus 110 ~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~ 189 (386)
T 3sjl_D 110 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAP 189 (386)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEET
T ss_pred EEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCC
Confidence 89999999999888775321 23557899999999998874 68999999999999988876543 122223
Q ss_pred eEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccE-EEEEec-CCcceeEEeecCCeEEEE
Q psy4869 1264 IQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV-LCARVS-PDSKLLAVSLLDTTVKIF 1341 (2435)
Q Consensus 1264 ~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~ia~s-pdg~~lavgs~dG~V~v~ 1341 (2435)
..+++.+.||++.+.++........... . .+... ...+ ....|. ++|+++. .+.+|+|+++
T Consensus 190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~---------~---~~~~~----~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~ 252 (386)
T 3sjl_D 190 DTFFMHCRDGSLAKVAFGTEGTPEITHT---------E---VFHPE----DEFLINHPAYSQKAGRLVW-PTYTGKIHQI 252 (386)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEEC---------C---CCSCT----TSCBCSCCEEETTTTEEEE-EBTTSEEEEE
T ss_pred ceeEEECCCCCEEEEECCCCCeEEEeec---------c---eeccc----cccccccceeEcCCCcEEE-EeCCCEEEEE
Confidence 4567888899999999864221110000 0 00000 0011 112453 6776554 5568999999
Q ss_pred Ecccce--EEEEec----------CCCCCeEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCceEEEeccccc
Q psy4869 1342 FLDTFK--FFISLY----------GHKLPVLSLDMSYDSTLIATGSG----------DRTVKVWGLDYGDCHKSLLAHED 1399 (2435)
Q Consensus 1342 d~~~~k--~i~~~~----------~h~~~V~~la~spdg~~L~sGg~----------Dg~V~iwdl~~gk~~~~~~~h~~ 1399 (2435)
|..... .+..+. ...+....++++++++.|+.... .+.|.++|+.++++++.+.-- .
T Consensus 253 d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~ 331 (386)
T 3sjl_D 253 DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-H 331 (386)
T ss_dssp ECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-E
T ss_pred ECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-C
Confidence 996543 222221 01233445778999998888643 257999999999999987633 2
Q ss_pred ceEEEEEeeCCC-EEEE-EeCCCcEEEEECCCceeEEEEe
Q psy4869 1400 SVTGVTFVPKTH-YFFT-TSKDGRVKQWDADNFERIVTLH 1437 (2435)
Q Consensus 1400 ~V~~laf~P~~~-~laS-gg~Dg~V~lWd~~~~~~l~~~~ 1437 (2435)
++..|+|+|+++ +|.+ ...++.|.++|..+.+.+++++
T Consensus 332 ~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 332 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 688999999985 5555 5568999999999999999886
No 248
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.17 E-value=5.1e-09 Score=133.77 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=194.4
Q ss_pred CCCCEEEEEECC-----CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEccCC
Q psy4869 1050 PDSKLLAVSLLD-----TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYG 1114 (2435)
Q Consensus 1050 pdg~~Lavg~~d-----g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~t~ 1114 (2435)
++++.+++.... +.|.++|..+++.+..+..-..+ .++++||+++|+++. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 577888887753 68999999999999999866666 899999999888776 4678999999999
Q ss_pred ceeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC-C
Q psy4869 1115 DCHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD-S 1184 (2435)
Q Consensus 1115 ~~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d-g 1184 (2435)
+.+..+... ......+.|+|++++++++.. ++.|.++|+.+.+.+..+.. .. . ....|+ .
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-----~g---~--~~~~p~g~ 229 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-----PD---C--YHIFPASP 229 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-----CS---E--EEEEEEET
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-----CC---c--eeeccCCC
Confidence 998887532 123457899999999999874 57899999999887776641 11 1 122232 2
Q ss_pred CEEEEEeCCCcEEEEEccCCceeeE----eeccCCCE-EEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCccc
Q psy4869 1185 TLIATGSGDRTVKVWGLDYGDCHKS----LLAHEDSV-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVY 1259 (2435)
Q Consensus 1185 ~~l~sgs~Dg~V~iwd~~t~~~~~~----~~~h~~~V-~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~ 1259 (2435)
+.+++.+.||.+.+.+..+++.... +.....++ ..+.+.+++..++.....+.+.+.|........
T Consensus 230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v--------- 300 (426)
T 3c75_H 230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF--------- 300 (426)
T ss_dssp TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE---------
T ss_pred cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE---------
Confidence 4556666777777777755554422 11111121 124567777766666677777777765432110
Q ss_pred ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec-----
Q psy4869 1260 LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL----- 1334 (2435)
Q Consensus 1260 ~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~----- 1334 (2435)
+.-|.+..... .. .. . .......++++||++.+.+...
T Consensus 301 ---------------~~~~~~~~~~~----------i~---~g-------~--~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 301 ---------------RAPIEALTEAE----------RA---DD-------W--RPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp ---------------CCCEESSCTTT----------GG---GT-------E--EECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred ---------------eeeeeeccccc----------cc---cc-------c--ccCCceeeEEcCCCCEEEEEecccccc
Confidence 00011100000 00 00 0 0011113578999887777643
Q ss_pred -----CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEe
Q psy4869 1335 -----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSL 1394 (2435)
Q Consensus 1335 -----dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~ 1394 (2435)
.+.|.++|..+++.+..+.... ....++|+|||+ ++++.. .++.|.++|..+++.++.+
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999998887433 478899999999 888888 5999999999999999886
No 249
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=5.1e-09 Score=129.91 Aligned_cols=240 Identities=11% Similarity=0.137 Sum_probs=169.8
Q ss_pred CCCCeeEEEEccCCCEEEE-------EeCCCeEEEEECCCCceEEEEe----ccCccccccCcccCCCeEEEEEeCCCeE
Q psy4869 404 HTGAVMDLKFSTDGCHIFT-------CSTDQTLAVWDLEKGQRIKKMK----GHSTFVNSCDPVRRGQLLIASGSDDCTV 472 (2435)
Q Consensus 404 h~~~V~~l~~s~dg~~L~s-------~s~Dg~I~vwd~~tg~~v~~l~----~h~~~v~sv~~~~~~~~llasgs~Dg~I 472 (2435)
.-....+++|++++..+++ ...++.|.+||..+++...... ++...+..+.+.+++..++++.. +..|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3456789999999987777 5678899999988887543222 24456778888887334444443 3478
Q ss_pred EEEeCCCCcceEe-ec-----CcccEEEEEECCCCCEEEEEecC---------------CeEEEEECCCCcEEEEEecCC
Q psy4869 473 KVWDPRKKNQAVS-MN-----NTYQVTSVAFNDTAECVLTGGID---------------NDIKMWDLRTNSVVQKLRGHS 531 (2435)
Q Consensus 473 ~vwD~~~~~~~~~-~~-----~~~~v~sv~~sp~g~~l~sgs~d---------------g~V~lwD~~s~~~v~~l~~h~ 531 (2435)
.+||.. ++.... .. ....+.+++++++|++.++...+ +.|..||.. ++... +..+.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCC
Confidence 999988 654433 21 12357899999999988776655 678888876 55433 33334
Q ss_pred CCEEEEEEc----CCCCEEEEE-ECCCcEEEEEcCCCCCCCc-----eEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 532 DTVTGLSLS----PDGSYILSN-AMDNTVRIWDIRPYVPGER-----CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 532 ~~V~~i~~s----pdg~~las~-s~Dg~I~lWdl~~~~~~~~-----~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
.....++|+ |+|+.|+.+ ..++.|.+||+.. .++ ....+.++. ......++++++|+++++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~---~g~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v~~~~ 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG---PAKIENKKVWGHIPGTH---EGGADGMDFDEDNNLLVANWG 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE---TTEEEEEEEEEECCCCS---SCEEEEEEEBTTCCEEEEEET
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC---CCccccceEEEECCCCC---CCCCCceEECCCCCEEEEEcC
Confidence 457899999 999766655 5689999999762 111 111222111 024677999999999888888
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEE-EEECCCcEEEecCC
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIM-SASSDKTIYLGESP 653 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~La-sgs~Dg~I~vWd~~ 653 (2435)
++.|.+||..+++.+..+..+...+.+++|+|+++.|+ +...++.|..|+++
T Consensus 246 ~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 246 SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 89999999988887777777778899999999999555 44566889998876
No 250
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.13 E-value=6.7e-09 Score=132.72 Aligned_cols=285 Identities=13% Similarity=0.039 Sum_probs=198.9
Q ss_pred CCCCEEEEEECC-----CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCCc
Q psy4869 1092 YDSTLIATGSGD-----RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTS----------KDGRVKQWDADNF 1156 (2435)
Q Consensus 1092 pdg~~L~Sgs~D-----g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s----------~Dg~V~iwD~~~~ 1156 (2435)
++++.+++.... +.|.++|..+++.+.++..-..+ .+.++|+++.++++. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 466666666553 69999999999999999865555 899999999888876 3678999999998
Q ss_pred ceeEEEEEE-EeecccccCeEEEEEeCCCCEEEEEeC--CCcEEEEEccCCceeeEeeccCCCEEEEEEeeC-CCEEEEE
Q psy4869 1157 ERIVTLHFF-ISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPK-THYFFTT 1232 (2435)
Q Consensus 1157 ~~~~~~~~~-~~~~~h~~~V~~l~~s~dg~~l~sgs~--Dg~V~iwd~~t~~~~~~~~~h~~~V~~i~~spd-~~~lvsg 1232 (2435)
+....+... ............+.++|||++++++.. ++.|.++|+.+++.+..+.... . ....|+ .+.+++.
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~ 235 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMN 235 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEE
Confidence 887766410 000001123456899999999999874 5789999999999888775422 1 233443 3667778
Q ss_pred ECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccc
Q psy4869 1233 SKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLK 1312 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1312 (2435)
+.||.+.+.+....+...... .+++...
T Consensus 236 ~~dG~~~~V~~~~~~v~~~~~----------------------~~~~v~~------------------------------ 263 (426)
T 3c75_H 236 CRDGSLARVDFADGETKVTNT----------------------EVFHTED------------------------------ 263 (426)
T ss_dssp ETTSSEEEEECCTTCCEEEEC----------------------CCCSCTT------------------------------
T ss_pred cCCCCEEEEECCCCcEEEEee----------------------eeeccCC------------------------------
Confidence 889988888874333221100 0111110
Q ss_pred ccccEEEEEecCCcceeEEeecCCeEEEEEcccceEE--EEecC----------CCCCeEEEEEecCCCEEEEEeC----
Q psy4869 1313 LEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFF--ISLYG----------HKLPVLSLDMSYDSTLIATGSG---- 1376 (2435)
Q Consensus 1313 ~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i--~~~~~----------h~~~V~~la~spdg~~L~sGg~---- 1376 (2435)
......+.+.++++.++..+..|.|.+.|....... ..+.. .......++++||++.++....
T Consensus 264 -~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~ 342 (426)
T 3c75_H 264 -ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE 342 (426)
T ss_dssp -SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT
T ss_pred -CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccc
Confidence 000112467889888888888999999998654321 11110 0112223689999998777643
Q ss_pred ------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEEEe-CCCcEEEEECCCceeEEEE
Q psy4869 1377 ------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFTTS-KDGRVKQWDADNFERIVTL 1436 (2435)
Q Consensus 1377 ------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laSgg-~Dg~V~lWd~~~~~~l~~~ 1436 (2435)
++.|.++|..+++.++.+.... ....|+|+|+++ ++++.. .++.|.++|..+.+.++++
T Consensus 343 gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 343 WKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 3579999999999999886432 478999999998 888777 5899999999999999886
No 251
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.13 E-value=2.5e-09 Score=149.79 Aligned_cols=273 Identities=12% Similarity=0.013 Sum_probs=177.3
Q ss_pred CCCCEEEEEeCCCe---EEEEec--C---CceeeEE-----EeeCCCCCeeEEEEccCCCEEEEEeCC-----CeEEEEE
Q psy4869 372 PDGQYIASSGYDRQ---IFIWSV--Y---GECENIG-----VMSGHTGAVMDLKFSTDGCHIFTCSTD-----QTLAVWD 433 (2435)
Q Consensus 372 pdg~~Lasgs~Dg~---I~iwd~--~---~~~~~~~-----~l~~h~~~V~~l~~s~dg~~L~s~s~D-----g~I~vwd 433 (2435)
|+|.+++....++. -.+|.. . ++..... .-.+|...+..++|+|||++|+.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 78888776654432 455543 2 2221111 112344478899999999999887654 4699999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-------------eEEEEeCCCCcc--eEeec---CcccEEEE
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-------------TVKVWDPRKKNQ--AVSMN---NTYQVTSV 495 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-------------~I~vwD~~~~~~--~~~~~---~~~~v~sv 495 (2435)
+.+|+.+... .+...+..+.|+|+ ..++.+...+. .|++|++.++.. ...+. +...+..+
T Consensus 196 l~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~ 273 (741)
T 1yr2_A 196 VADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA 273 (741)
T ss_dssp TTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred CCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence 9999876532 12222467889999 66665543322 489999987653 22222 22358899
Q ss_pred EECCCCCEEEEEecCC-----eEEEEECCCC--cEEEEEecCCCCEEEEEEcCCCCEEEEEECC----CcEEEEEcCCCC
Q psy4869 496 AFNDTAECVLTGGIDN-----DIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPDGSYILSNAMD----NTVRIWDIRPYV 564 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~dg-----~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spdg~~las~s~D----g~I~lWdl~~~~ 564 (2435)
.|+|||++|+....++ .|++||+.++ +....+..+.+.+.... +|+|+.|+..+.+ +.|.+||+....
T Consensus 274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 352 (741)
T 1yr2_A 274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST 352 (741)
T ss_dssp EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence 9999999999877554 8999999887 41455555555555553 4899999887764 459999987421
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC-CCcEEEEecC-CCCCeeEEEEcCCCCEEE-EE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT-TRRIAYKLPG-HNGSVNDVQFHPKEPIIM-SA 641 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~-s~~~~~~l~~-h~~~V~~l~fspd~~~La-sg 641 (2435)
......+..+. ..+..+.|+ ++.++++...|+..+||.+. +++.+..+.. +.+.|..+.++|+++.|+ +.
T Consensus 353 --~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ 425 (741)
T 1yr2_A 353 --PRFDTVVPESK----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSF 425 (741)
T ss_dssp --CEEEEEECCCS----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEE
T ss_pred --cccEEEecCCC----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEE
Confidence 22233333322 235567777 66778888889887777554 4666666765 367789999999988555 33
Q ss_pred E---CCCcEEEecCCC
Q psy4869 642 S---SDKTIYLGESPL 654 (2435)
Q Consensus 642 s---~Dg~I~vWd~~~ 654 (2435)
+ ..+.|++||+..
T Consensus 426 ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 426 SSFTQPATVLALDPAT 441 (741)
T ss_dssp EETTEEEEEEEEETTT
T ss_pred cCCCCCCEEEEEECCC
Confidence 2 347899999863
No 252
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.12 E-value=1.2e-08 Score=126.46 Aligned_cols=239 Identities=10% Similarity=0.101 Sum_probs=163.8
Q ss_pred CCcEEEEEECCCCCEEEE-------EeCCCeEEEEecCCceeeEEEe---eCCCCCeeEEEEccC-CCEEEEEeCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIAS-------SGYDRQIFIWSVYGECENIGVM---SGHTGAVMDLKFSTD-GCHIFTCSTDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Las-------gs~Dg~I~iwd~~~~~~~~~~l---~~h~~~V~~l~~s~d-g~~L~s~s~Dg~I~ 430 (2435)
-....+++|+++|.++++ +..++.|.+||..++....... .++...+..++++++ ++ |+.+..++.|.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l~ 95 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGLL 95 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCEE
Confidence 345578999999998888 6788999999975543221111 125577999999998 64 55555555899
Q ss_pred EEECCCCceEEE-Eec----cCccccccCcccCCCeEEEEEeCC---------------CeEEEEeCCCCcceEeecCcc
Q psy4869 431 VWDLEKGQRIKK-MKG----HSTFVNSCDPVRRGQLLIASGSDD---------------CTVKVWDPRKKNQAVSMNNTY 490 (2435)
Q Consensus 431 vwd~~tg~~v~~-l~~----h~~~v~sv~~~~~~~~llasgs~D---------------g~I~vwD~~~~~~~~~~~~~~ 490 (2435)
+||.+ ++.... ... +...+.++.+.+++..++ +...+ +.|..||.. ++.........
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWI-TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEE-EECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEE-EecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 99998 765433 221 123467888888875544 44433 578888876 44433333344
Q ss_pred cEEEEEEC----CCCCEEEEE-ecCCeEEEEECC-CCc-----EEEEEecCC-CCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 491 QVTSVAFN----DTAECVLTG-GIDNDIKMWDLR-TNS-----VVQKLRGHS-DTVTGLSLSPDGSYILSNAMDNTVRIW 558 (2435)
Q Consensus 491 ~v~sv~~s----p~g~~l~sg-s~dg~V~lwD~~-s~~-----~v~~l~~h~-~~V~~i~~spdg~~las~s~Dg~I~lW 558 (2435)
....++|+ |+++.++++ ..++.|.+||.+ +++ ....+.++. ..+..++++++|+++++...++.|.+|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence 56889999 999776666 457899999986 454 223334444 668899999999988888889999999
Q ss_pred EcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEE-EecCCCeEEEEECCC
Q psy4869 559 DIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVT-AGSADKCVYIWDTTT 612 (2435)
Q Consensus 559 dl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~La-sgs~Dg~V~iwd~~s 612 (2435)
|.+. .+.+..+..+. ..+.+++|+++|++|+ +...++.|..|++..
T Consensus 253 d~~~----g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 253 GPDG----GQPKMRIRCPF----EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTC----BSCSEEEECSS----SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCC----CcEeEEEeCCC----CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 9863 23333443331 3678999999999555 455678899999764
No 253
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=4.3e-06 Score=117.70 Aligned_cols=491 Identities=11% Similarity=0.020 Sum_probs=290.2
Q ss_pred CceEEEEecCCCcEEEEecCC-cEEEEeCCCCceeEEE-e-------CCCeEEEEEEec--CCCEEEEEeCCCeEEEEEc
Q psy4869 886 SEVRALAFSSDNLALVSACAS-QVKIWNRPSLSCLRTI-D-------TGSYALSVCFVP--GDRHVLVGTKDGRLLIVDI 954 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~-~V~Iwd~~~~~~~~~l-~-------~~~~v~~vafsp--dg~~Lavg~~dg~V~vwd~ 954 (2435)
..|.+|...++|..|..|..+ .+..||..+.+...-. . ....+.++.... ++ .|.+|+.++.|..||.
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~ 144 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDI 144 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEET
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEEC
Confidence 468999999888834455554 8999999876654321 1 123577777666 44 5677776667889998
Q ss_pred cCCceeeccc-----ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccccccccccee
Q psy4869 955 GAGEILEDIP-----AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1029 (2435)
Q Consensus 955 ~sg~~v~~~~-----~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l 1029 (2435)
+++++..-.. .....|.++....++ .|..+..++-|..++.....+.. +...
T Consensus 145 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-----------~lwigt~~~Gl~~~~~~~~~~~~--------~~~~---- 201 (781)
T 3v9f_A 145 ATGKFTHYNKSTVPALPSEQTWTATEAEDG-----------KLYIGHVEGGLSILSLNDKSVKH--------FVHD---- 201 (781)
T ss_dssp TTTEEEEESTTTCTTCSCCCEEEEEEEETT-----------EEEEEETTTEEEEEETTTTEEEE--------ECC-----
T ss_pred CCCeEEeeccCcccCCCccceEEEEECCCC-----------CEEEEecCCCeEEEcCCCCceEe--------eecC----
Confidence 8777543211 112457777766664 56667766567778754322100 0000
Q ss_pred eeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEEEEC
Q psy4869 1030 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIATGSG 1102 (2435)
Q Consensus 1030 ~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~Sgs~ 1102 (2435)
..... .-....|.++...++|.+.+ |..+ -+.+|+..+.+....... ....|.+|....+|. |..|..
T Consensus 202 -~~~~~-~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~ 276 (781)
T 3v9f_A 202 -PQNPN-SLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATE 276 (781)
T ss_dssp ---------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEES
T ss_pred -CCCcc-cCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeC
Confidence 00000 01135688999999887655 4444 588899876654332211 235699999887776 555677
Q ss_pred CCcEEEEEccCCceeEEEe--------------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE--
Q psy4869 1103 DRTVKVWGLDYGDCHKSLL--------------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-- 1166 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~--------------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-- 1166 (2435)
.+-|.++|..+++...... .....|.++...+++. |..|..++-|..|+....... .+....
T Consensus 277 ~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~ 354 (781)
T 3v9f_A 277 LNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQ 354 (781)
T ss_dssp SSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE-EEC----C
T ss_pred CCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce-eeccCccc
Confidence 5678899987665332211 1345789999988776 666777778899987654321 111000
Q ss_pred --eecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEe---eccCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1167 --SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL---LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1167 --~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~---~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
........|.++...++|. |..|+.++-|..||..+++..... ......|.++...++++ |..|+.++-|..+
T Consensus 355 ~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 432 (781)
T 3v9f_A 355 MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYY 432 (781)
T ss_dssp CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEE
T ss_pred cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEE
Confidence 0011245689998887775 556676667999998755422111 12345789998877776 5557777778889
Q ss_pred ECCCCceEEEEeeC----Ccc---cccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1242 DADNFERIVTLHFN----PNV---YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1242 D~~~~~~v~~~~~~----~~~---~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
|.++.+. ..+... ... +......+..|+. +.+..|+........... . .......
T Consensus 433 ~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~---------------~-~~~~~~~ 494 (781)
T 3v9f_A 433 NTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYD---------------T-SNSQLLE 494 (781)
T ss_dssp CSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEEC---------------T-TTSSCSC
T ss_pred cCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEeccc---------------C-ccccccc
Confidence 8765432 222110 001 1122335666665 567778765322100000 0 0000123
Q ss_pred ccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceE
Q psy4869 1315 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG---HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1391 (2435)
Q Consensus 1315 ~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~---h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~ 1391 (2435)
..+.++...++|.. .+|+.++.|..||.+..+...-... ....|.++...++|++.+... +|.|..||.++++..
T Consensus 495 ~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~ 572 (781)
T 3v9f_A 495 NFVRSIAQDSEGRF-WIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQ 572 (781)
T ss_dssp SCEEEEEECTTCCE-EEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCE
T ss_pred ceeEEEEEcCCCCE-EEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEE
Confidence 57889998888864 4566655577888776654332211 235689999999998766554 777688998887654
Q ss_pred EEeccc---ccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1392 KSLLAH---EDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1392 ~~~~~h---~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
.-...+ ...|.++..++++.+.+++ ++.|..+|..+.+
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~ 613 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWAST--NTGISCYITSKKC 613 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEEC--SSCEEEEETTTTE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEEc--CCceEEEECCCCc
Confidence 322111 2368899999999877754 3458888887543
No 254
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=4.7e-06 Score=117.35 Aligned_cols=489 Identities=11% Similarity=0.051 Sum_probs=287.6
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe---------CCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID---------TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~---------~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
+..|.+|+-.++|. |-.|..+.+..||-.+.+.... . ....+.++....+|+.|.+|+.++.|..||.+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~ 95 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEGLNKFDGTRFITYYK-EEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYE 95 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSCEEEECSSSEEEECC-CSSCSSSCCCSCSCEEEEEECSSSSEEEEEESSSCEEEEETT
T ss_pred cCEeEEEEECCCCC-EEEccCCcCccccCCceEEEEc-CCCCCccccccccccceEEEcCCCCEEEEEeCCCCcceECCC
Confidence 35799999988884 5566666677788554222111 1 12358888887777757788888679999998
Q ss_pred CCceeecc-c---c---cccceeEEEEec--CCCCCCCcCCcceEEEEEeCCCeEEEEEccccccccccccccccccccc
Q psy4869 956 AGEILEDI-P---A---HSQELWSVAMLP--DQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSH 1026 (2435)
Q Consensus 956 sg~~v~~~-~---~---h~~~V~sv~~s~--d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~ 1026 (2435)
+++...-. . . ....|.++.... ++ .|..+..++-|..++.....+.. +.. .
T Consensus 96 ~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-----------~lwi~t~~~gl~~~~~~~~~~~~--------~~~-~ 155 (781)
T 3v9f_A 96 TQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-----------GLWVCTYYRGIEYLDIATGKFTH--------YNK-S 155 (781)
T ss_dssp TTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-----------EEEEEESSSCEEEEETTTTEEEE--------EST-T
T ss_pred CCeEEeeccccCCCCCcccCcceEEEecCccCC-----------CEEEEECCCCeeEEECCCCeEEe--------ecc-C
Confidence 87754321 0 0 123577777665 44 56666644557777754222100 000 0
Q ss_pred ceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEec-------CCcCEEEEEEcCCCCEEEE
Q psy4869 1027 KVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYG-------HKLPVLSLDMSYDSTLIAT 1099 (2435)
Q Consensus 1027 ~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~-------h~~~V~sl~~spdg~~L~S 1099 (2435)
.........|.++...++|.+.+ |..++-+..|+..+.+...-... ....|.+|...+++.+.+
T Consensus 156 -------~~~~l~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi- 226 (781)
T 3v9f_A 156 -------TVPALPSEQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI- 226 (781)
T ss_dssp -------TCTTCSCCCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-
T ss_pred -------cccCCCccceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-
Confidence 00001124588888887776554 66565688899877654332111 134699999888887655
Q ss_pred EECCCcEEEEEccCCceeEEEe-------ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEE----EEEe-
Q psy4869 1100 GSGDRTVKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLH----FFIS- 1167 (2435)
Q Consensus 1100 gs~Dg~I~vWd~~t~~~~~~l~-------~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~----~~~~- 1167 (2435)
|..+ -|.+||..+++...... .....|.++...+++. |..|...+-|.++|..+........ .+..
T Consensus 227 gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~ 304 (781)
T 3v9f_A 227 GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREG 304 (781)
T ss_dssp EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBC
T ss_pred EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCC
Confidence 5555 68999987665432211 1245689998887766 5556665678889887643211100 0000
Q ss_pred ---ecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEee---------ccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1168 ---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL---------AHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1168 ---~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~---------~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
.......|.++....+|. |..|..++-|..++...+....... -....|.++...++++ |..|+.+
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~ 382 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDG 382 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBS
T ss_pred CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCC
Confidence 011345799999888775 6667777779999987655322110 1235689998877766 6677777
Q ss_pred CcEEEEECCCCceEEEE---eeCCc-cc---ccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeec
Q psy4869 1236 GRVKQWDADNFERIVTL---HFNPN-VY---LPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHT 1308 (2435)
Q Consensus 1236 g~I~vwD~~~~~~v~~~---~~~~~-~~---~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1308 (2435)
+-|..||.......... ..... ++ ......|..|+.++.+..++.+..... ....
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~------------------~~~~ 444 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ------------------IIEL 444 (781)
T ss_dssp SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE------------------ECCS
T ss_pred CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE------------------Eecc
Confidence 77888987643211100 00000 10 112334566666666777765321110 0000
Q ss_pred ccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCC-----CCCeEEEEEecCCCEEEEEeCCCcEEEE
Q psy4869 1309 RTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH-----KLPVLSLDMSYDSTLIATGSGDRTVKVW 1383 (2435)
Q Consensus 1309 ~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h-----~~~V~~la~spdg~~L~sGg~Dg~V~iw 1383 (2435)
. ......|.++...++|.. .+|+. +.|.+|+..+++........ ...|.++...++|++.+....+| |..|
T Consensus 445 ~-~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~ 520 (781)
T 3v9f_A 445 E-KNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIY 520 (781)
T ss_dssp T-TTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEE
T ss_pred C-CCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEE
Confidence 0 112356888888888764 44555 56888998776543322222 35789999999998766544345 6778
Q ss_pred eCCCCceEEEecc---cccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1384 GLDYGDCHKSLLA---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1384 dl~~gk~~~~~~~---h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
+.+.++...-... ....|.+|..++++.+.++.. +|.|..||..+.+
T Consensus 521 ~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 521 TPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFD 570 (781)
T ss_dssp CTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCC
T ss_pred eCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCc
Confidence 8877765432211 235799999999998777554 6655888887643
No 255
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.05 E-value=2.3e-08 Score=129.05 Aligned_cols=238 Identities=11% Similarity=0.079 Sum_probs=166.6
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-eEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-TVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-~I~vwD~~~~~~~~ 484 (2435)
.....|+|+++++++++...++.|++||..+++........ .... ++|.+++..++++....+ .|.+||...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 46788999999987777767789999999877765555442 3333 888888876555444333 89999987655433
Q ss_pred ee----c-CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE----EecCCCCE--EEEEEcCC-CCEEEEEECC
Q psy4869 485 SM----N-NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQK----LRGHSDTV--TGLSLSPD-GSYILSNAMD 552 (2435)
Q Consensus 485 ~~----~-~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~----l~~h~~~V--~~i~~spd-g~~las~s~D 552 (2435)
.+ . ....+.+++++|++..|+++..++.|+.||..++..... ..++...- ..|+|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 33 2 445678899999666666677889999999988764332 22222222 39999995 5555566678
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcc---c--------ccccCeEEEEEcCCCCEEEEec-CCCeEEEEECCCCcEEEEec
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQ---H--------NFEKNLLRCAWSVSGLYVTAGS-ADKCVYIWDTTTRRIAYKLP 620 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~---~--------~~~~~i~~v~~spdg~~Lasgs-~Dg~V~iwd~~s~~~~~~l~ 620 (2435)
++|+.||... . +..+.++. . ..-.....++++++|+++++-. .++.|+.||..+++.. .+.
T Consensus 289 ~~I~~~~~~g-----~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~ 361 (409)
T 3hrp_A 289 SSVYKITPDG-----E-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVA 361 (409)
T ss_dssp TEEEEECTTC-----C-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEE
T ss_pred CEEEEEecCC-----C-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEe
Confidence 9999999762 2 23333321 0 0012467899999999888888 8999999998888653 333
Q ss_pred CC---------------CCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 621 GH---------------NGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 621 ~h---------------~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
++ -.....|++.+++.++++-..++.|+.+++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 43 245889999999888888888888887654
No 256
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.04 E-value=2.1e-09 Score=135.36 Aligned_cols=170 Identities=17% Similarity=0.208 Sum_probs=136.7
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCc-----------eeEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEEEEcc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLS-----------CLRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIG 955 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~-----------~~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~ 955 (2435)
+++.|++++.+..+|+|....++||+++..+ ....++.+. +..|+| |+++|+++ .++.|.+||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 6888999999999999999999999977554 224556666 999999 99999999 88999999998
Q ss_pred CCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeecc
Q psy4869 956 AGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTR 1035 (2435)
Q Consensus 956 sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1035 (2435)
+.........|..++.++.+.+. .++++..||.|.+|++..... .
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p------------~~av~~~dG~L~v~dl~~~~~-----------------~------ 159 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNN------------TLVILNSVNDLSALDLRTKST-----------------K------ 159 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSS------------EEEEEETTSEEEEEETTTCCE-----------------E------
T ss_pred hhhccCccceeecceeeEEecCC------------CEEEEECCCCEEEEEccCCcc-----------------c------
Confidence 76655556677777887776653 388889999999999863221 0
Q ss_pred ccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeE--EEEE------e---cCCcCEEEEEEcCCCCEEEE
Q psy4869 1036 TLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKF--FISL------Y---GHKLPVLSLDMSYDSTLIAT 1099 (2435)
Q Consensus 1036 ~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~--~~~l------~---~h~~~V~sl~~spdg~~L~S 1099 (2435)
.+...|+|++|||+| +++|..||.+++|+.+..+. ..++ . +|...|.+|.|.+++.+|++
T Consensus 160 --~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 160 --QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --EEEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred --cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 123579999999999 78899999999999888775 5666 3 47788999999999888875
No 257
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.04 E-value=6.7e-08 Score=123.52 Aligned_cols=305 Identities=10% Similarity=0.017 Sum_probs=192.0
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecC---------CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEe
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGH---------KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h---------~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
++..|++++.++.|..+|..+++.+..+... ...+.+.- ..++..++.++.++.|..+|.++|+.+....
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3667888888899999999999887766542 22332221 2245678889999999999999999888776
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEc
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL 1201 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~ 1201 (2435)
........... .+..+++++.++.|..+|..+++.+............ ......... +..++++..++.|..+|.
T Consensus 131 ~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~--~~~v~~g~~~g~l~~~d~ 205 (376)
T 3q7m_A 131 VAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL-RGESAPTTA--FGAAVVGGDNGRVSAVLM 205 (376)
T ss_dssp CSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC------CCCCCCEEE--TTEEEECCTTTEEEEEET
T ss_pred CCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee-cCCCCcEEE--CCEEEEEcCCCEEEEEEC
Confidence 54322212222 2457888889999999999999887766421000000 000111222 457888888999999999
Q ss_pred cCCceeeEeeccCCC----EE---EEEEee--CCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECC
Q psy4869 1202 DYGDCHKSLLAHEDS----VT---GVTFVP--KTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGD 1272 (2435)
Q Consensus 1202 ~t~~~~~~~~~h~~~----V~---~i~~sp--d~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d 1272 (2435)
.+|+.+......... +. .+...| .+..++.++.++.+..+|.++++.+......
T Consensus 206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----------------- 268 (376)
T 3q7m_A 206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG----------------- 268 (376)
T ss_dssp TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-----------------
T ss_pred CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-----------------
Confidence 999987665432110 00 010111 2455666667777777777655433221100
Q ss_pred CeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEe
Q psy4869 1273 KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL 1352 (2435)
Q Consensus 1273 ~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~ 1352 (2435)
....+. .++..+.+++.+|.|..+|..+++.+...
T Consensus 269 -------------------------------------------~~~~~~--~~~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 269 -------------------------------------------SVNDFI--VDGNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp -------------------------------------------CEEEEE--EETTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred -------------------------------------------CCCCce--EECCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 011111 23567777888999999999999887766
Q ss_pred cCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1353 YGH-KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1353 ~~h-~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
... ...+..+.. .+..|+.++.+|.|+++|..+|+.+...+.....+.+.... .+..|..++.||.|..||
T Consensus 304 ~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 304 SDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEE
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEe
Confidence 522 222222222 35788899999999999999999887766533333322222 255777789999999987
No 258
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.03 E-value=1.6e-09 Score=136.64 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=137.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCce----------eeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGEC----------ENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD 433 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~----------~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd 433 (2435)
.++.+++++...++++|+.++ +++|++.... ... ....+.. |+.|+| |+.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 578899999999999999985 5569865322 111 1223566 999999 88999998 889999999
Q ss_pred CCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeE
Q psy4869 434 LEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDI 513 (2435)
Q Consensus 434 ~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V 513 (2435)
+.+.........|...+.++.+.+. . ++.+..||.|.+||+..+.... ....|.|++|+|+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766677777777877766554 3 7788999999999999776543 45689999999999 7889999999
Q ss_pred EEEECCCCcE--EEEE------e---cCCCCEEEEEEcCCCCEEEE
Q psy4869 514 KMWDLRTNSV--VQKL------R---GHSDTVTGLSLSPDGSYILS 548 (2435)
Q Consensus 514 ~lwD~~s~~~--v~~l------~---~h~~~V~~i~~spdg~~las 548 (2435)
++|+...++. ..++ . +|...|.+|.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999988875 5666 3 47889999999999988885
No 259
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.03 E-value=1.5e-07 Score=120.18 Aligned_cols=305 Identities=11% Similarity=0.067 Sum_probs=192.4
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCC----------CeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTG----------SYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~----------~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
+++.++...++.|..+|..+++.+.....+ ..+.+ ....++..|++++.++.|+.+|.++|+++.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 444444444689999999999998777652 22321 2223567888899999999999999998866654
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
........... + ..++.++.++.|..+|...++..+....... ... .. ....
T Consensus 132 ~~~~~~~p~~~-~-----------~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~-------~~~------~~---~~~~ 183 (376)
T 3q7m_A 132 AGEALSRPVVS-D-----------GLVLIHTSNGQLQALNEADGAVKWTVNLDMP-------SLS------LR---GESA 183 (376)
T ss_dssp SSCCCSCCEEE-T-----------TEEEEECTTSEEEEEETTTCCEEEEEECCC------------------C---CCCC
T ss_pred CCceEcCCEEE-C-----------CEEEEEcCCCeEEEEECCCCcEEEEEeCCCC-------cee------ec---CCCC
Confidence 33221112222 2 3678888899999999876654332111000 000 00 0001
Q ss_pred EEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCc-------CEEEEEEcC--CCCEEEEEECCCcEEEEEccCCce
Q psy4869 1046 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-------PVLSLDMSY--DSTLIATGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~-------~V~sl~~sp--dg~~L~Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
.... +..++++..++.+..+|..+++.+........ .+..+.-.| .+..++.++.++.|..+|.++|+.
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE
Confidence 1111 45677888889999999999888776653211 000011111 246778888899999999999998
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcE
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTV 1196 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 1196 (2435)
+..... .....+.. ++..++.++.++.|..+|..+++...... ......+..... .+..|++++.+|.|
T Consensus 262 ~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-----~~~~~~~~~~~~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 262 MWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS-----DLLHRLLTSPVL--YNGNLVVGDSEGYL 330 (376)
T ss_dssp EEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC-----TTTTSCCCCCEE--ETTEEEEECTTSEE
T ss_pred EeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec-----ccCCCcccCCEE--ECCEEEEEeCCCeE
Confidence 876643 22344443 46678888889999999999988765432 011112222222 25688999999999
Q ss_pred EEEEccCCceeeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEEC
Q psy4869 1197 KVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDA 1243 (2435)
Q Consensus 1197 ~iwd~~t~~~~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~ 1243 (2435)
+++|..+++.+..+......+...-.. .+..|+.++.+|.|..||.
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~-~~~~l~v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSGFQTEPVA-ADGKLLIQAKDGTVYSITR 376 (376)
T ss_dssp EEEETTTCCEEEEEECCTTCBCSCCEE-ETTEEEEEBTTSCEEEEEC
T ss_pred EEEECCCCcEEEEEecCCCcceeCCEE-ECCEEEEEeCCCEEEEEeC
Confidence 999999999887766533333322122 2456888888999988863
No 260
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.03 E-value=7.4e-09 Score=145.00 Aligned_cols=246 Identities=10% Similarity=-0.002 Sum_probs=164.6
Q ss_pred cccCCcEEEEEECCCCCEEEEEeCC-----CeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCe-----
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASSGYD-----RQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQT----- 428 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasgs~D-----g~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~----- 428 (2435)
.+|...+..++|+|||++||.+..+ ..|++||+.++....... +...+..++|+|| +.|+.++.|+.
T Consensus 159 ~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 159 KDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred cCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccc
Confidence 3455578899999999999887654 469999998764322111 1222357899999 99988887654
Q ss_pred ---------EEEEECCCCce--EEEEe--ccCccccccCcccCCCeEEEEEeC----CCeEEEEeCCCC--c-ceEeecC
Q psy4869 429 ---------LAVWDLEKGQR--IKKMK--GHSTFVNSCDPVRRGQLLIASGSD----DCTVKVWDPRKK--N-QAVSMNN 488 (2435)
Q Consensus 429 ---------I~vwd~~tg~~--v~~l~--~h~~~v~sv~~~~~~~~llasgs~----Dg~I~vwD~~~~--~-~~~~~~~ 488 (2435)
|++|++.+++. ...+. .+...+..+.|+|++..++++... ...|.+||+.++ + ......+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~ 315 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD 315 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC
Confidence 89999987752 22232 333457788899999877766643 348999999876 4 3333333
Q ss_pred cccEEEEEECCCCCEEEEEec----CCeEEEEECCCC--cEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 489 TYQVTSVAFNDTAECVLTGGI----DNDIKMWDLRTN--SVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 489 ~~~v~sv~~sp~g~~l~sgs~----dg~V~lwD~~s~--~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
...+.... +|+|+.|+..+. ++.|.+||+.++ +....+..+...+..+.|. ++.++++...|+..+||.+..
T Consensus 316 ~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 316 LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET
T ss_pred CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC
Confidence 33444443 489998888765 356999999885 3334444555567778887 667778888999988887652
Q ss_pred CCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEE----ecCCCeEEEEECCCCcE
Q psy4869 563 YVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA----GSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 563 ~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las----gs~Dg~V~iwd~~s~~~ 615 (2435)
.+.....+..+. ...+..+.++|+++.|+. ....+.|++||+.+++.
T Consensus 394 ---~g~~~~~l~~~~---~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 394 ---DGKPAGAVSLPG---IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---TSCEEEECBCSS---SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---CCCceeeccCCC---CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233444443221 235778899999986663 23457899999998873
No 261
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.02 E-value=4.1e-09 Score=133.00 Aligned_cols=271 Identities=11% Similarity=0.040 Sum_probs=172.2
Q ss_pred cCEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCceeEEEe-------ccCCCEEEEEEccCCCEEEEEeC-----CCcE
Q psy4869 1083 LPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSK-----DGRV 1148 (2435)
Q Consensus 1083 ~~V~sl~~spdg~~L~Sgs~--Dg~I~vWd~~t~~~~~~l~-------~h~~~V~~v~fsp~~~~l~s~s~-----Dg~V 1148 (2435)
.....++++++|+++++... ++.++||.+.+++ +..+. .+-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999999888642 3436666665554 33221 24567999999999876555443 5789
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----CCCcEEEEEccCCceeeEeeccCCCEE-EEEEe
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----GDRTVKVWGLDYGDCHKSLLAHEDSVT-GVTFV 1223 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----~Dg~V~iwd~~t~~~~~~~~~h~~~V~-~i~~s 1223 (2435)
.+||+.+++....+........+...+..+++++++..++.+. .++.|.+||+.+++..+.+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 9999988775555431101112234578999998655555443 578999999998887665544432110 02233
Q ss_pred eCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccccccccccccee
Q psy4869 1224 PKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVL 1303 (2435)
Q Consensus 1224 pd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 1303 (2435)
+++..+.+...++.+. .|.
T Consensus 176 ~~g~~~~~~~~~g~~~-------------------------------------~~~------------------------ 194 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVI-------------------------------------RPH------------------------ 194 (343)
T ss_dssp ETTEECBEECTTSCEE-------------------------------------CCC------------------------
T ss_pred ECCEEEEeccCCCcee-------------------------------------cee------------------------
Confidence 3443333333333322 221
Q ss_pred eeeecccccccccEEEEEecCCcceeEEeecCC-eEEEEEcccc--------eEEE--EecCCCCCeEEEEEecCCCEEE
Q psy4869 1304 SLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDT-TVKIFFLDTF--------KFFI--SLYGHKLPVLSLDMSYDSTLIA 1372 (2435)
Q Consensus 1304 ~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG-~V~v~d~~~~--------k~i~--~~~~h~~~V~~la~spdg~~L~ 1372 (2435)
..+..++|+|||+.|.++...+ ++..++.... +... ...++.+....++++++|++++
T Consensus 195 -----------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~v 263 (343)
T 2qe8_A 195 -----------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYV 263 (343)
T ss_dssp -----------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEE
T ss_pred -----------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEE
Confidence 1245689999999888877666 5555554211 0000 1113344566789999999999
Q ss_pred EEeCCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEEeCCCcEEEEE
Q psy4869 1373 TGSGDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWD 1426 (2435)
Q Consensus 1373 sGg~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd 1426 (2435)
+...++.|.+||..+|+...... .+-.++.+|+|.+++.++++.+..+.+.+|.
T Consensus 264 a~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 264 GDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred EccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 99999999999996676433332 2355799999999999998887766665554
No 262
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.02 E-value=6.7e-08 Score=124.69 Aligned_cols=237 Identities=11% Similarity=0.103 Sum_probs=165.2
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC--eEEEEECCCCceE
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ--TLAVWDLEKGQRI 440 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg--~I~vwd~~tg~~v 440 (2435)
.....|+|+++|+++++...++.|++||..+..... .... ..... ++|+++++.|+++..++ .|.+||...+...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 356789999999988887778999999987643322 2222 23334 99999999999988866 8999998776554
Q ss_pred EEE----eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe----ecCcccE---EEEEECCC-CCEEEEEe
Q psy4869 441 KKM----KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS----MNNTYQV---TSVAFNDT-AECVLTGG 508 (2435)
Q Consensus 441 ~~l----~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~----~~~~~~v---~sv~~sp~-g~~l~sgs 508 (2435)
..+ ..+...+.++++.+.+..+++ +..++.|..||...+..... ....... ..++|+|+ +.++++-.
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 444 224556788888886556666 56688999999987654332 1111111 28999996 44455555
Q ss_pred cCCeEEEEECCCCcEEEEEecCC---------------CCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEE
Q psy4869 509 IDNDIKMWDLRTNSVVQKLRGHS---------------DTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 509 ~dg~V~lwD~~s~~~v~~l~~h~---------------~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
.++.|+.||.... +..+.++. ....+|+++|+|+++++-. .+++|+.||+.. +. +..
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~----G~-v~~ 359 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD----GY-VST 359 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT----TE-EEE
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC----CE-EEE
Confidence 6789999997654 33443332 3578999999999888877 899999999652 22 344
Q ss_pred EeCcccc-----------cccCeEEEEEcCCCCEEEEecCCCeEEEEEC
Q psy4869 573 MSGHQHN-----------FEKNLLRCAWSVSGLYVTAGSADKCVYIWDT 610 (2435)
Q Consensus 573 ~~~h~~~-----------~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~ 610 (2435)
+.++... .-.....++++++|.++++-..++.|+.+++
T Consensus 360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 360 VAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 4333100 0135788999999988888888899988775
No 263
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=2.2e-08 Score=137.57 Aligned_cols=317 Identities=15% Similarity=0.124 Sum_probs=204.6
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+|+.+++..++.|.-+|..+++.+..++.... ...+++ ++..|++++.|+.|+.+|.++|+++..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55555555568899999999999988874321 123333 4678889999999999999999998777
Q ss_pred ccc-c----cceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccccc-------
Q psy4869 964 PAH-S----QELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVSRS------- 1025 (2435)
Q Consensus 964 ~~h-~----~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~~~------- 1025 (2435)
..+ . ..+.+.-...+ ..++.+.. +|.|+.+|...++..+............
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-----------~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~ 223 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFK-----------GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMK 223 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEET-----------TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHH
T ss_pred cCCcCcCcCcccccCcEEEC-----------CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccc
Confidence 654 1 01111000111 35555543 6999999998777554422111100000
Q ss_pred --cceeee-eecccc-ccCCCEEEEEEcCCCCEEEEEECCC-------------------cEEEEEcCCCeEEEEEec--
Q psy4869 1026 --HKVLSL-LHTRTL-KLEEQVLCARVSPDSKLLAVSLLDT-------------------TVKIFFLDTFKFFISLYG-- 1080 (2435)
Q Consensus 1026 --~~~l~~-~~~~~~-~~~~~v~~l~~spdg~~Lavg~~dg-------------------~V~i~d~~~~~~~~~l~~-- 1080 (2435)
...... ...... ........+++++++.+|+++..++ .|..+|.++++.+..++.
T Consensus 224 ~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~ 303 (677)
T 1kb0_A 224 RAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETP 303 (677)
T ss_dssp HHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESST
T ss_pred cccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCC
Confidence 000000 000000 0111223578999999999887664 499999999998887763
Q ss_pred CC-------cCEEEEEEcCCC---CEEEEEECCCcEEEEEccCCceeEEEeccCC-----------CE------------
Q psy4869 1081 HK-------LPVLSLDMSYDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHED-----------SV------------ 1127 (2435)
Q Consensus 1081 h~-------~~V~sl~~spdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~-----------~V------------ 1127 (2435)
|. ....-+....+| ..++.++.+|.|+++|..+|+.+..+..... .+
T Consensus 304 ~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 383 (677)
T 1kb0_A 304 GDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQ 383 (677)
T ss_dssp TCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCE
T ss_pred CcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCcc
Confidence 21 112223344477 6789999999999999999998877652210 01
Q ss_pred ------------EEEEEccCCCEEEEEeCC-------------------------------------------CcEEEEe
Q psy4869 1128 ------------TGVTFVPKTHYFFTTSKD-------------------------------------------GRVKQWD 1152 (2435)
Q Consensus 1128 ------------~~v~fsp~~~~l~s~s~D-------------------------------------------g~V~iwD 1152 (2435)
..++|+|+..++++...+ +.|..||
T Consensus 384 ~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D 463 (677)
T 1kb0_A 384 DAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWD 463 (677)
T ss_dssp ECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEE
T ss_pred EECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEe
Confidence 146888888888775431 7799999
Q ss_pred CCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC-CCEEEEEEeeCCCEEEE
Q psy4869 1153 ADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE-DSVTGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1153 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~-~~V~~i~~spd~~~lvs 1231 (2435)
+.+++.+.... +..++....+...+..++.++.||.+++||.++++.+..+.... ....-+.|..+++++++
T Consensus 464 ~~tG~~~W~~~-------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 464 PVAQKAAWSVE-------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTTEEEEEEE-------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEEeecC-------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99998877664 22334444556678889999999999999999999998887443 23344556677766554
Q ss_pred E
Q psy4869 1232 T 1232 (2435)
Q Consensus 1232 g 1232 (2435)
.
T Consensus 537 ~ 537 (677)
T 1kb0_A 537 V 537 (677)
T ss_dssp E
T ss_pred E
Confidence 4
No 264
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.01 E-value=9.7e-08 Score=117.73 Aligned_cols=232 Identities=11% Similarity=0.038 Sum_probs=158.5
Q ss_pred CCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCc
Q psy4869 403 GHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKN 481 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~ 481 (2435)
.+........|++++. .+++...++.|+.||..+++. ..+. ....+..+.+.+++. ++++ . +..|.+||..+++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc
Confidence 3445567889999655 455555688999999987765 3332 345678888999887 3333 2 5689999998776
Q ss_pred ceEeec-----CcccEEEEEECCCCCEEEEEec-----------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 482 QAVSMN-----NTYQVTSVAFNDTAECVLTGGI-----------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 482 ~~~~~~-----~~~~v~sv~~sp~g~~l~sgs~-----------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
...... ....++.++++|+|++.++... .+.|+.+|.. ++.. .+..+-...+.++|+||++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEeeccccccceEEcCCCCE
Confidence 443322 2345889999999996665432 2345555543 3332 23334456789999999997
Q ss_pred EE-EEECCCcEEEEEcCCCCCCCce--EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCC
Q psy4869 546 IL-SNAMDNTVRIWDIRPYVPGERC--VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 546 la-s~s~Dg~I~lWdl~~~~~~~~~--v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h 622 (2435)
|+ +.+.++.|.+||+... .+.. ...+.... ........+++.++|++.++...++.|.+||..+++++..+..+
T Consensus 163 lyv~~~~~~~i~~~~~d~~--~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQ--TGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEGGGTEEEEEEECTT--TCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEecCCCCcEEEEeccCC--CCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 75 4556889999998421 1211 11111110 11134678899999998888888899999999999999999888
Q ss_pred CCCeeEEEEc-CCCCEEEEEECC
Q psy4869 623 NGSVNDVQFH-PKEPIIMSASSD 644 (2435)
Q Consensus 623 ~~~V~~l~fs-pd~~~Lasgs~D 644 (2435)
...+++++|. |+++.|+.++..
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBC
T ss_pred CCCceEEEEeCCCCCEEEEEcCC
Confidence 7889999998 888877666643
No 265
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.00 E-value=2.7e-07 Score=113.70 Aligned_cols=230 Identities=11% Similarity=0.023 Sum_probs=156.8
Q ss_pred eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 970 LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 970 V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
..+..|.++. +..+++...++.|..|+.+.... ........+.+++++
T Consensus 15 ~Egp~w~~~~---------~~l~~~d~~~~~i~~~d~~~~~~-----------------------~~~~~~~~~~~i~~~ 62 (297)
T 3g4e_A 15 GESPVWEEVS---------NSLLFVDIPAKKVCRWDSFTKQV-----------------------QRVTMDAPVSSVALR 62 (297)
T ss_dssp EEEEEEETTT---------TEEEEEETTTTEEEEEETTTCCE-----------------------EEEECSSCEEEEEEB
T ss_pred ccCCeEECCC---------CEEEEEECCCCEEEEEECCCCcE-----------------------EEEeCCCceEEEEEC
Confidence 3567788753 24666666789999998753221 012234678999999
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEec----CCcCEEEEEEcCCCCEEEEEECC---------CcEEEEEccCCce
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYG----HKLPVLSLDMSYDSTLIATGSGD---------RTVKVWGLDYGDC 1116 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~----h~~~V~sl~~spdg~~L~Sgs~D---------g~I~vWd~~t~~~ 1116 (2435)
++|++++ +. ++.|.+||.++++....... ....+.+++++++|+++++...+ ..-.+|.+.....
T Consensus 63 ~dG~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~ 140 (297)
T 3g4e_A 63 QSGGYVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH 140 (297)
T ss_dssp TTSSEEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC
T ss_pred CCCCEEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC
Confidence 9999544 44 56799999988765433322 22458899999999977654322 2345665543322
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCC--CcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCC
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFT-TSKDGRVKQWDAD--NFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGD 1193 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s-~s~Dg~V~iwD~~--~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 1193 (2435)
+..+..+....+.++|+|+++.|+. .+.++.|.+||+. ++.. ...+....+..+......+++.++|++.++....
T Consensus 141 ~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 141 VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT
T ss_pred EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC
Confidence 3333334455789999999987755 4567889999974 4432 1112222222334567889999999877777778
Q ss_pred CcEEEEEccCCceeeEeeccCCCEEEEEEe-eCCCEEEEEEC
Q psy4869 1194 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFV-PKTHYFFTTSK 1234 (2435)
Q Consensus 1194 g~V~iwd~~t~~~~~~~~~h~~~V~~i~~s-pd~~~lvsgs~ 1234 (2435)
+.|..||.++++.+..+..+...+++++|. |+++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 889999999999888888777889999998 78877776664
No 266
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.98 E-value=3.6e-08 Score=135.65 Aligned_cols=339 Identities=12% Similarity=0.034 Sum_probs=203.5
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcC----------E-EEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP----------V-LSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~----------V-~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
+..|++++.++.|..+|..+++.+-.+..+... + ..+.+ ++..|+.++.|+.|..+|.++|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 667778877899999999999988887533210 0 11122 3567888999999999999999998887
Q ss_pred ecc--CCCEEEEEEcc---CCCEEEEEe------CCCcEEEEeCCCcceeEEEEEEEeec--------------------
Q psy4869 1121 LAH--EDSVTGVTFVP---KTHYFFTTS------KDGRVKQWDADNFERIVTLHFFISLY-------------------- 1169 (2435)
Q Consensus 1121 ~~h--~~~V~~v~fsp---~~~~l~s~s------~Dg~V~iwD~~~~~~~~~~~~~~~~~-------------------- 1169 (2435)
... ......+...| ++ .++++. .++.|+.||..+++.+..+.......
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 642 11111111122 44 444443 36899999999999888765210000
Q ss_pred -----ccccCeEEEEEeCCCCEEEEEeCCCc-------------------EEEEEccCCceeeEeec--cC-------CC
Q psy4869 1170 -----GHKLPVLSLDMSYDSTLIATGSGDRT-------------------VKVWGLDYGDCHKSLLA--HE-------DS 1216 (2435)
Q Consensus 1170 -----~h~~~V~~l~~s~dg~~l~sgs~Dg~-------------------V~iwd~~t~~~~~~~~~--h~-------~~ 1216 (2435)
........++++++..+++.+..++. |..||.++|+.+..++. |. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00011125788888899999987763 99999999998877764 22 12
Q ss_pred EEEEEEeeCCC---EEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccc
Q psy4869 1217 VTGVTFVPKTH---YFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEET 1293 (2435)
Q Consensus 1217 V~~i~~spd~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~ 1293 (2435)
+.-.....+++ .++.++.+|.++++|.++++.+....+....+.. + .+..............
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~-------~--------~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTK-------G--------MDMKTGRPILDEENAA 371 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE-------E--------EETTTTEEEECHHHHC
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccccc-------c--------cCccCCCcccchhhcc
Confidence 22222223554 7888999999999999999988766554321100 0 0000000000000000
Q ss_pred cccccccceeeeeeccccccc-ccEEEEEecCCcceeEEee---------------------------------------
Q psy4869 1294 KDVSRSHKVLSLLHTRTLKLE-EQVLCARVSPDSKLLAVSL--------------------------------------- 1333 (2435)
Q Consensus 1294 ~~~~~~~~~~~~~~~~~~~~~-~~i~~ia~spdg~~lavgs--------------------------------------- 1333 (2435)
. .. ..... ........ .....++++|+...+.+..
T Consensus 372 ~-~~-~~~~~---~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~ 446 (689)
T 1yiq_A 372 Y-WK-NGKRN---LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGL 446 (689)
T ss_dssp T-TT-SSSCE---EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHH
T ss_pred c-cC-CCCee---EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccC
Confidence 0 00 00000 00000000 0011234444444444331
Q ss_pred ------cCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc-ceEEEEE
Q psy4869 1334 ------LDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVTGVTF 1406 (2435)
Q Consensus 1334 ------~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~-~V~~laf 1406 (2435)
.+|.|+.||+.+++.+..+..+.. +..-.+...+.+|+.|+.|+.|+.||.++|+++..++.... ...-+.|
T Consensus 447 ~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty 525 (689)
T 1yiq_A 447 LEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTY 525 (689)
T ss_dssp HHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred CCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEE
Confidence 148899999999999888775542 33335667888999999999999999999999987764422 2244667
Q ss_pred eeCCCEEE
Q psy4869 1407 VPKTHYFF 1414 (2435)
Q Consensus 1407 ~P~~~~la 1414 (2435)
..+|..++
T Consensus 526 ~~~G~qyv 533 (689)
T 1yiq_A 526 SVDGEQYV 533 (689)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 78885444
No 267
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=7.1e-08 Score=132.53 Aligned_cols=337 Identities=12% Similarity=0.013 Sum_probs=211.2
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCc-----------CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKL-----------PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~-----------~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
+..|++++.++.|..+|..+++.+-.+..... ....+++ ++..|+.++.|+.|..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 56677777789999999999998887754321 0112232 4567888999999999999999999888
Q ss_pred ecc-C----CCEEEEEEccCCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEeec--------------------
Q psy4869 1121 LAH-E----DSVTGVTFVPKTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISLY-------------------- 1169 (2435)
Q Consensus 1121 ~~h-~----~~V~~v~fsp~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~~-------------------- 1169 (2435)
..+ . ..+...-.. .+..+++++. ++.|+.||..+++.+..+.......
T Consensus 155 ~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 754 1 111111111 2345555543 6899999999999888775211100
Q ss_pred ------ccccCeEEEEEeCCCCEEEEEeCCC-------------------cEEEEEccCCceeeEeec--cC-------C
Q psy4869 1170 ------GHKLPVLSLDMSYDSTLIATGSGDR-------------------TVKVWGLDYGDCHKSLLA--HE-------D 1215 (2435)
Q Consensus 1170 ------~h~~~V~~l~~s~dg~~l~sgs~Dg-------------------~V~iwd~~t~~~~~~~~~--h~-------~ 1215 (2435)
........+++++++..++.+..++ .|..+|.++|+.+..++. |. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 0011113578888899999887664 499999999998877653 21 1
Q ss_pred CEEEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccccccccc
Q psy4869 1216 SVTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEE 1292 (2435)
Q Consensus 1216 ~V~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~ 1292 (2435)
...-+....++ ..++.++.+|.|.++|.++++.+..+.+....+. . -+| ............
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~-------~--------~~d-~~g~~~~~~~~~ 377 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-------S--------GYD-KHGKPIGIAAAR 377 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-------E--------EEC-TTSCEEECGGGG
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcc-------c--------ccC-CCCceeeccccC
Confidence 12222333466 6788999999999999999998887765432110 0 011 000000000000
Q ss_pred ccccccccceeeeeecccccccccEEEEEecCCcceeEEeec--------------------------------------
Q psy4869 1293 TKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL-------------------------------------- 1334 (2435)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~-------------------------------------- 1334 (2435)
. ........ ..... ......++++|++..+.+...
T Consensus 378 ~-----~~~~~~~~-P~~~G-~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 450 (677)
T 1kb0_A 378 D-----GSKPQDAV-PGPYG-AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEP 450 (677)
T ss_dssp C-----TTSCEECS-SCTTC-SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSC
T ss_pred c-----CCCccEEC-cCccc-ccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccccccc
Confidence 0 00000000 00000 011124677777777666543
Q ss_pred -----CCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccc-ccceEEEEEee
Q psy4869 1335 -----DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFVP 1408 (2435)
Q Consensus 1335 -----dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h-~~~V~~laf~P 1408 (2435)
.|.|..||+.+++.+..+... .++....+..++.+++.|+.||.+++||..+|+++..+... .....-+.|.+
T Consensus 451 ~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~ 529 (677)
T 1kb0_A 451 PKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMV 529 (677)
T ss_dssp CCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEe
Confidence 278999999999988877633 34445556778889999999999999999999999887633 23334556678
Q ss_pred CCCEEEE
Q psy4869 1409 KTHYFFT 1415 (2435)
Q Consensus 1409 ~~~~laS 1415 (2435)
++..++.
T Consensus 530 ~G~~~v~ 536 (677)
T 1kb0_A 530 DGRQYVS 536 (677)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 8865554
No 268
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.97 E-value=4.8e-08 Score=121.01 Aligned_cols=232 Identities=9% Similarity=0.089 Sum_probs=158.2
Q ss_pred eCCCCCeeEEEEccCCC-EEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCC
Q psy4869 402 SGHTGAVMDLKFSTDGC-HIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKK 480 (2435)
Q Consensus 402 ~~h~~~V~~l~~s~dg~-~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~ 480 (2435)
...........|+++++ ++++...++.|..|+. +++ ...+..+...++.+.+.+++. ++++...++.|.+||.. +
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-S
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEECCC-C
Confidence 33445677899999998 5566667889999998 454 345555666778888888875 55555556789999986 4
Q ss_pred cceEeec-----CcccEEEEEECCCCCEEEE----Eec-------------CCeEEEEECCCCcEEEEEecCCCCEEEEE
Q psy4869 481 NQAVSMN-----NTYQVTSVAFNDTAECVLT----GGI-------------DNDIKMWDLRTNSVVQKLRGHSDTVTGLS 538 (2435)
Q Consensus 481 ~~~~~~~-----~~~~v~sv~~sp~g~~l~s----gs~-------------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~ 538 (2435)
+...... ....++.++++++|++.++ |.. .+.|+.||..+++..... +....+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~ 194 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLA 194 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEE
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceE
Confidence 4322221 1234678999999998876 332 357888998777654433 345678999
Q ss_pred EcCCCCEEEEEECC------CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 539 LSPDGSYILSNAMD------NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 539 ~spdg~~las~s~D------g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
|+||++.|+.+..+ +.|.+||+.... ......+... .......+++.++|++.+ +..+ .|.+||. .
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~---~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~ 266 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASV---PDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-D 266 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECC---SSSCCCSEEECTTSCEEE-CCSS-EEEEECT-T
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEEC---CCCCCCeEEECCCCCEEE-ecCC-cEEEECC-C
Confidence 99999988877665 789999986321 0011111111 012234578999999544 4444 4999998 5
Q ss_pred CcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 613 RRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
++.+..+..+. .+..++|.++++.|+.++.++..+
T Consensus 267 g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 267 GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp SCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77777776555 589999999999888888765444
No 269
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.96 E-value=4.3e-08 Score=134.91 Aligned_cols=319 Identities=15% Similarity=0.135 Sum_probs=198.9
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+++.++.+.++.|.-+|..+++.+..++.... ...+++ ++..|++++.|+.|+.+|.++|+++..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 55555555568899999999999988864321 112222 4678889999999999999999988766
Q ss_pred ccc--ccceeEEEEecCCCCCCCcCCcceEEEEEe------CCCeEEEEEcccccccccccccccccc--cccceeee-e
Q psy4869 964 PAH--SQELWSVAMLPDQFNPNVYLPLQIQVVTGG------GDKSVKLWQLELVSVNREADEETKDVS--RSHKVLSL-L 1032 (2435)
Q Consensus 964 ~~h--~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~--~~~~~l~~-~ 1032 (2435)
... ......+...|- -.+..++.+. .+|.|+.||...++..+.......... .....+.. .
T Consensus 148 ~~~~~~~~~~~~~~sP~--------v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 219 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPR--------VVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA 219 (689)
T ss_dssp ECCSCTTSCCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred cCcCCCCCCccccCCcE--------EECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence 432 111111111110 0012455543 368999999987776554221000000 00000000 0
Q ss_pred ecc---cc----ccCCCEEEEEEcCCCCEEEEEECCCc-------------------EEEEEcCCCeEEEEEec--CC--
Q psy4869 1033 HTR---TL----KLEEQVLCARVSPDSKLLAVSLLDTT-------------------VKIFFLDTFKFFISLYG--HK-- 1082 (2435)
Q Consensus 1033 ~~~---~~----~~~~~v~~l~~spdg~~Lavg~~dg~-------------------V~i~d~~~~~~~~~l~~--h~-- 1082 (2435)
... .. ........++++|++.+|+++..++. |..+|.++++.+..++. |.
T Consensus 220 ~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~w 299 (689)
T 1yiq_A 220 KTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW 299 (689)
T ss_dssp TTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCS
T ss_pred cccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccc
Confidence 000 00 00111235789999999999987753 99999999999888764 21
Q ss_pred -----cCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-C----------------------------
Q psy4869 1083 -----LPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE-D---------------------------- 1125 (2435)
Q Consensus 1083 -----~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-~---------------------------- 1125 (2435)
.++.-.....+|+ .++.++.+|.++++|.++|+.+....... .
T Consensus 300 d~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~ 379 (689)
T 1yiq_A 300 DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRN 379 (689)
T ss_dssp CCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCE
T ss_pred cccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCee
Confidence 2222223333564 78889999999999999999875443111 0
Q ss_pred ----------CEEEEEEccCCCEEEEEeC---------------------------------------------CCcEEE
Q psy4869 1126 ----------SVTGVTFVPKTHYFFTTSK---------------------------------------------DGRVKQ 1150 (2435)
Q Consensus 1126 ----------~V~~v~fsp~~~~l~s~s~---------------------------------------------Dg~V~i 1150 (2435)
....++|+|+..++++... +|.|+.
T Consensus 380 ~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A 459 (689)
T 1yiq_A 380 LVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIA 459 (689)
T ss_dssp EESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEE
T ss_pred EeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEE
Confidence 0112688888777776532 377999
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCCEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTHYF 1229 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~~l 1229 (2435)
||+.+++.+.... +..++..-.+...+.+++.|+.||.|+.||.++|+.+..+....+. ..-+.|..++++.
T Consensus 460 ~D~~tG~~~W~~~-------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 460 WDPVKQQAAWEVP-------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp EETTTTEEEEEEE-------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred EECCCCCeEeEcc-------CCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence 9999998877764 1222333344556789999999999999999999999888754332 2346666777655
Q ss_pred EE
Q psy4869 1230 FT 1231 (2435)
Q Consensus 1230 vs 1231 (2435)
++
T Consensus 533 v~ 534 (689)
T 1yiq_A 533 VT 534 (689)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 270
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=1.4e-08 Score=128.14 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=174.6
Q ss_pred CcEEEEEECCCCCEEEEEe--CCCeEEEEecCCceeeEEEe-------eCCCCCeeEEEEccCCCEEEEEeC-----CCe
Q psy4869 363 GEIFCSKYHPDGQYIASSG--YDRQIFIWSVYGECENIGVM-------SGHTGAVMDLKFSTDGCHIFTCST-----DQT 428 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~l-------~~h~~~V~~l~~s~dg~~L~s~s~-----Dg~ 428 (2435)
.....++++|+|+++++.. .++.++||.+..+. +..+ ..|...+..++++++++++++-.. ++.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6788999999999998864 23435566554221 1211 235678999999999865554333 578
Q ss_pred EEEEECCCCceEEEEecc------CccccccCcccCCCeEEEEEe---CCCeEEEEeCCCCcceEeecCc-c-cEEEEEE
Q psy4869 429 LAVWDLEKGQRIKKMKGH------STFVNSCDPVRRGQLLIASGS---DDCTVKVWDPRKKNQAVSMNNT-Y-QVTSVAF 497 (2435)
Q Consensus 429 I~vwd~~tg~~v~~l~~h------~~~v~sv~~~~~~~~llasgs---~Dg~I~vwD~~~~~~~~~~~~~-~-~v~sv~~ 497 (2435)
|.+||+.+++.+..+..+ ...++.+++.+++..++++.. .++.|.+||+.+++....+... . ......+
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999877777532 234577788776667777766 7889999999877655544221 1 0001334
Q ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC-cEEEEEcCCCCC---CC-c---e
Q psy4869 498 NDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN-TVRIWDIRPYVP---GE-R---C 569 (2435)
Q Consensus 498 sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg-~I~lWdl~~~~~---~~-~---~ 569 (2435)
.++|..+.+.+.+|.+..|. ..+..|+|+|||+.|+.+..++ .+..++...... .. + .
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 45677777777777765553 2468899999999999888766 444444321000 00 0 0
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecC-CCCCeeEEEEcCCCCEEEEEECCCcEE
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPG-HNGSVNDVQFHPKEPIIMSASSDKTIY 648 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~-h~~~V~~l~fspd~~~Lasgs~Dg~I~ 648 (2435)
+... ++. .....++++++|+++++...++.|.+||.++++....... +...+.+++|.+++.++++.+..+.+.
T Consensus 241 ~~~~-g~~----g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 241 IERY-SEK----PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp CEEE-EEC----CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred eEec-ccC----CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 0111 111 1234589999999999999999999999966765433322 345689999999988888777555544
Q ss_pred Ee
Q psy4869 649 LG 650 (2435)
Q Consensus 649 vW 650 (2435)
+|
T Consensus 316 ~f 317 (343)
T 2qe8_A 316 PL 317 (343)
T ss_dssp GG
T ss_pred cc
Confidence 33
No 271
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.90 E-value=3.3e-08 Score=124.41 Aligned_cols=290 Identities=7% Similarity=-0.116 Sum_probs=189.5
Q ss_pred CCCEEEEEECC-C----cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEEccCCc
Q psy4869 1051 DSKLLAVSLLD-T----TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYGD 1115 (2435)
Q Consensus 1051 dg~~Lavg~~d-g----~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs----------~Dg~I~vWd~~t~~ 1115 (2435)
+...+++.... + .|.++|.++++.+.++.....+ .+.++||+++++++. .++.|.+||..+++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 33455555543 3 7889999999999999866667 799999999988886 37889999999999
Q ss_pred eeEEEecc-------CCCEEEEEEccCCCEEEEEeC--CCcEEE--EeCCCcceeEEEEEEEeecccccCeEEEEEeCCC
Q psy4869 1116 CHKSLLAH-------EDSVTGVTFVPKTHYFFTTSK--DGRVKQ--WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDS 1184 (2435)
Q Consensus 1116 ~~~~l~~h-------~~~V~~v~fsp~~~~l~s~s~--Dg~V~i--wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg 1184 (2435)
.+.++... ......++|+||+++++++.. +..|.+ +|..+ ...+. . . .. +.+.|++
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~----v-~--~~---~~~~p~g 174 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTK----S-A--SC---FHIHPGA 174 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEE----C-S--SC---CCCEEEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEE----C-C--Cc---eEEccCC
Confidence 99998643 123568999999999998875 457888 88876 23322 1 1 11 1122333
Q ss_pred -CEEEEEeCCCcEEEEEccC-----Cceee----EeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee
Q psy4869 1185 -TLIATGSGDRTVKVWGLDY-----GDCHK----SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF 1254 (2435)
Q Consensus 1185 -~~l~sgs~Dg~V~iwd~~t-----~~~~~----~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~ 1254 (2435)
..+++.+.||.+.+.|+++ ++... .+.....+. . .+++..++..+. +.+.+.|+......
T Consensus 175 ~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~----- 244 (368)
T 1mda_H 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT----- 244 (368)
T ss_dssp TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE-----
T ss_pred CeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce-----
Confidence 3445566788888888886 44321 121223343 2 555666665556 77877777532110
Q ss_pred CCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeec
Q psy4869 1255 NPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLL 1334 (2435)
Q Consensus 1255 ~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~ 1334 (2435)
.+..|.+..... ... .........++++||++.+.++..
T Consensus 245 -------------------v~~~~~~~~~~~-------------~~~---------~~~p~g~~~v~~s~dg~~lyV~~~ 283 (368)
T 1mda_H 245 -------------------MKAAIDGNESGR-------------KAD---------NFRSAGFQMVAKLKNTDGIMILTV 283 (368)
T ss_dssp -------------------EECCCCSSCTHH-------------HHT---------TEEECSSSCEEEETTTTEEEEEEE
T ss_pred -------------------EEEEEEeccccc-------------ccc---------ccccCcceeeEEcCCCCEEEEEec
Confidence 011121110000 000 000111122579999998887654
Q ss_pred -C--------CeEEEEEcccceEEEEecCCCCCeEEEEEecCCC-EEEEEe-CCCcEEEEeCCCCceEEEecccccceEE
Q psy4869 1335 -D--------TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDST-LIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTG 1403 (2435)
Q Consensus 1335 -d--------G~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~-~L~sGg-~Dg~V~iwdl~~gk~~~~~~~h~~~V~~ 1403 (2435)
+ +.+.++|..+++.+..+.... ....|+|+|||+ ++++.. .++.|.++|+.+++.++.++.... ...
T Consensus 284 ~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~ 361 (368)
T 1mda_H 284 EHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PES 361 (368)
T ss_dssp ECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCE
T ss_pred cccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCE
Confidence 2 467799999999988887544 578899999998 566666 599999999999999998875544 345
Q ss_pred EEEee
Q psy4869 1404 VTFVP 1408 (2435)
Q Consensus 1404 laf~P 1408 (2435)
|++++
T Consensus 362 i~~~~ 366 (368)
T 1mda_H 362 LSVQN 366 (368)
T ss_dssp EECCC
T ss_pred EEeec
Confidence 55543
No 272
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.87 E-value=2e-07 Score=115.33 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=156.0
Q ss_pred ecccCCcEEEEEECCCCC-EEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCC
Q psy4869 358 LEGHGGEIFCSKYHPDGQ-YIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEK 436 (2435)
Q Consensus 358 l~gH~~~V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~t 436 (2435)
+..+........|+|+|+ +++++..++.|..|+..+. ...+..+...+..++++++|+++++...++.|.+||.+
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~---~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT---VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC---EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC---EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 334455667889999998 6677778899999987543 23344566789999999999866665566889999986
Q ss_pred CceEEEEecc----CccccccCcccCCCeEEEE----EeC-------------CCeEEEEeCCCCcceEeecCcccEEEE
Q psy4869 437 GQRIKKMKGH----STFVNSCDPVRRGQLLIAS----GSD-------------DCTVKVWDPRKKNQAVSMNNTYQVTSV 495 (2435)
Q Consensus 437 g~~v~~l~~h----~~~v~sv~~~~~~~~llas----gs~-------------Dg~I~vwD~~~~~~~~~~~~~~~v~sv 495 (2435)
++........ ...++++.+.+++..+ ++ |.. .+.|..||..+++..... .....+.+
T Consensus 116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl 193 (305)
T 3dr2_A 116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL 193 (305)
T ss_dssp SCEEEEECEETTEECSCCCCEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred CCEEEEEeccCCCccCCCCCEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence 6533222111 1346778888888544 43 321 356888887666654433 44567889
Q ss_pred EECCCCCEEEEEecC------CeEEEEECCCCcEE--EEE-ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 496 AFNDTAECVLTGGID------NDIKMWDLRTNSVV--QKL-RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d------g~V~lwD~~s~~~v--~~l-~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
+|+|+++.|+++... +.|++||+..+... ..+ ....+...+++++++|++.+ +..++ |.+||..
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~g-v~~~~~~----- 266 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTG-VCVFDSD----- 266 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSE-EEEECTT-----
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCc-EEEECCC-----
Confidence 999999988888765 78999998765421 111 12234456789999999544 44554 8899874
Q ss_pred CceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 567 ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 567 ~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
++.+..+.... .+..++|+++++.|+.++.++..
T Consensus 267 g~~~~~~~~~~-----~~~~~~f~~d~~~L~it~~~~l~ 300 (305)
T 3dr2_A 267 GQLLGHIPTPG-----TASNCTFDQAQQRLFITGGPCLW 300 (305)
T ss_dssp SCEEEEEECSS-----CCCEEEECTTSCEEEEEETTEEE
T ss_pred CCEEEEEECCC-----ceeEEEEeCCCCEEEEEcCCeEE
Confidence 45555554332 46789999999988888776533
No 273
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.85 E-value=9.3e-07 Score=110.50 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=153.1
Q ss_pred CeeEEEEccCCCE-EEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 407 AVMDLKFSTDGCH-IFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 407 ~V~~l~~s~dg~~-L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
......|++++.. +++...++.|..||..+++.. .+. ....+.++.+.+++..+++ .. ..|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~--~~-~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA--SD-DGLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE--ET-TEEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE--EC-CCEEEEECCCCcEEEE
Confidence 3456789997554 555556789999999877543 333 2356778888888754443 33 4499999987765433
Q ss_pred ecC-----cccEEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEE-ECCC
Q psy4869 486 MNN-----TYQVTSVAFNDTAECVLTGGI------DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSN-AMDN 553 (2435)
Q Consensus 486 ~~~-----~~~v~sv~~sp~g~~l~sgs~------dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~-s~Dg 553 (2435)
... ...++.++++|+|+++++... .+.|+.+| +++.. .+..+......++|+|||+.|+.+ +.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 221 246899999999997665432 35677777 45433 333334467899999999977655 4578
Q ss_pred cEEEEEcC--CC-CCCC-ceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEEEecCCCCCeeEE
Q psy4869 554 TVRIWDIR--PY-VPGE-RCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAYKLPGHNGSVNDV 629 (2435)
Q Consensus 554 ~I~lWdl~--~~-~~~~-~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l 629 (2435)
.|.+||+. .. .... +....+... ......+++.++|+++++...++.|.+||. +++.+..+..+...++++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~----~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGI----KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTS----SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCC----CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 99999985 21 1111 122222111 124567899999998887777789999998 678878787777789999
Q ss_pred EEc-CCCCEEEEEECCC
Q psy4869 630 QFH-PKEPIIMSASSDK 645 (2435)
Q Consensus 630 ~fs-pd~~~Lasgs~Dg 645 (2435)
+|. ++++.|+.++..+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 8888776655443
No 274
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.85 E-value=9.5e-07 Score=110.39 Aligned_cols=222 Identities=13% Similarity=0.018 Sum_probs=148.9
Q ss_pred cEEEEEECCCC-CEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEE
Q psy4869 364 EIFCSKYHPDG-QYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKK 442 (2435)
Q Consensus 364 ~V~~l~fspdg-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~ 442 (2435)
-.....|+|++ .+++++..++.|.+||..++.... +. +...+.+++|+++|+++++. .+ .|.+||..+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence 34677899975 456666678999999987654322 22 34689999999998766654 44 599999988875433
Q ss_pred Eec----cCccccccCcccCCCeEEEEEeC-----CCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCCe
Q psy4869 443 MKG----HSTFVNSCDPVRRGQLLIASGSD-----DCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDND 512 (2435)
Q Consensus 443 l~~----h~~~v~sv~~~~~~~~llasgs~-----Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~ 512 (2435)
... ....++++.+.+++..++.+... .+.|..+| .++...........+.++|+|+|+.++.+. .++.
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 221 12356788888988755544332 24566666 343332223334578999999999876654 5689
Q ss_pred EEEEECC--CC-c-----EEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe
Q psy4869 513 IKMWDLR--TN-S-----VVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL 584 (2435)
Q Consensus 513 V~lwD~~--s~-~-----~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i 584 (2435)
|.+||+. ++ + .+..+..+.....+++++++|++.++...++.|.+||.. ++.+..+..+. ..+
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-----g~~~~~i~~~~----~~~ 273 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-----GNHIARYEVPG----KQT 273 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-----CCEEEEEECSC----SBE
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-----CCEEEEEECCC----CCc
Confidence 9999986 55 3 233333345667899999999988777778899999874 34445554332 357
Q ss_pred EEEEEc-CCCCEEEEecC
Q psy4869 585 LRCAWS-VSGLYVTAGSA 601 (2435)
Q Consensus 585 ~~v~~s-pdg~~Lasgs~ 601 (2435)
.+++|+ ++++.|+.++.
T Consensus 274 ~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 274 TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEESTTSCEEEEEEB
T ss_pred EEEEEecCCCCEEEEEec
Confidence 899998 88877765543
No 275
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.83 E-value=6.2e-08 Score=134.35 Aligned_cols=243 Identities=12% Similarity=0.094 Sum_probs=161.9
Q ss_pred cccCCcEEEEEECCCCCEEEEE-----eCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCC------
Q psy4869 359 EGHGGEIFCSKYHPDGQYIASS-----GYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQ------ 427 (2435)
Q Consensus 359 ~gH~~~V~~l~fspdg~~Lasg-----s~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg------ 427 (2435)
.+|...+..++|+|||++||-+ +....|++||+.++......+.. .....++|+ ||+.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccc
Confidence 4566788899999999998843 33357999999876432222221 113568999 999999988774
Q ss_pred -------eEEEEECCCCc----eEEEEec-cCccccccCcccCCCeEEEEEeCC---CeEEEEeCCCCc--ceEeecCcc
Q psy4869 428 -------TLAVWDLEKGQ----RIKKMKG-HSTFVNSCDPVRRGQLLIASGSDD---CTVKVWDPRKKN--QAVSMNNTY 490 (2435)
Q Consensus 428 -------~I~vwd~~tg~----~v~~l~~-h~~~v~sv~~~~~~~~llasgs~D---g~I~vwD~~~~~--~~~~~~~~~ 490 (2435)
.|++|++.++. .+..... |......+.+++++..++++.+.+ ..|.++|+..+. ......+..
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~ 281 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLD 281 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCC
Confidence 39999998764 2333333 445566788999998887776543 589999997763 232223333
Q ss_pred cEEEEEECCCCCEEEEEe-c---CCeEEEEECCCCcE--EEEEecCCCCEEEEEEcCCCCEEEEEEC-CC--cEEEEEcC
Q psy4869 491 QVTSVAFNDTAECVLTGG-I---DNDIKMWDLRTNSV--VQKLRGHSDTVTGLSLSPDGSYILSNAM-DN--TVRIWDIR 561 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs-~---dg~V~lwD~~s~~~--v~~l~~h~~~V~~i~~spdg~~las~s~-Dg--~I~lWdl~ 561 (2435)
..... ++++|..|+..+ . .+.|..+|+.++.. ...+..|...+. .|++++++|+.... |+ .|++||+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE 358 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence 34443 666666665444 3 36899999988654 345666766665 89999998887665 44 68888876
Q ss_pred CCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC----CeEEEEECCCCcE
Q psy4869 562 PYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD----KCVYIWDTTTRRI 615 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D----g~V~iwd~~s~~~ 615 (2435)
. .....+.... ...+..+.++++++.|+....+ +.|+.||+.+++.
T Consensus 359 g-----~~~~~l~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 G-----KRVREVALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp S-----CEEEEECCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred C-----CeeEEeecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 2 2233332111 1245667778888776655443 7899999988764
No 276
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.82 E-value=1.2e-07 Score=119.24 Aligned_cols=257 Identities=8% Similarity=-0.073 Sum_probs=175.8
Q ss_pred cEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEe----------CCCcEEEEEccCCceeeEeeccC--
Q psy4869 1147 RVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGS----------GDRTVKVWGLDYGDCHKSLLAHE-- 1214 (2435)
Q Consensus 1147 ~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----------~Dg~V~iwd~~t~~~~~~~~~h~-- 1214 (2435)
.|.++|..+++.+..+. ....+ .+.++||+++++++. .++.|.+||+.+++.+..+..+.
T Consensus 47 ~vsvID~~t~~v~~~i~------vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~ 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL------GAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp EEEEEETTTTEEEEEEE------ECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred eEEEEECCCCeEEEEEe------CCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc
Confidence 88899999998887765 22334 799999999999886 36889999999999998886431
Q ss_pred -----CCEEEEEEeeCCCEEEEEEC--CCcEEE--EECCCCceEEEEeeCCc-ccccC-ceEEEEEECCCeEEEEEccc-
Q psy4869 1215 -----DSVTGVTFVPKTHYFFTTSK--DGRVKQ--WDADNFERIVTLHFNPN-VYLPL-QIQVVTGGGDKSVKLWQLEL- 1282 (2435)
Q Consensus 1215 -----~~V~~i~~spd~~~lvsgs~--Dg~I~v--wD~~~~~~v~~~~~~~~-~~~~~-~~~lv~g~~d~~v~iwdl~~- 1282 (2435)
..-..+.++||+++++++.. +..+.+ +|..+ +..+..... ...+. ...+++.+.|+.+.+.++..
T Consensus 119 ~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred ccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 23568999999999999885 456888 89877 455544322 11122 22345556788888888763
Q ss_pred ----ccccccccccccccccccceeeeeecccccc-cccEEEEEecCCcceeEEeecCCeEEEEEcccc--eEEEEecCC
Q psy4869 1283 ----VSVNREADEETKDVSRSHKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF--KFFISLYGH 1355 (2435)
Q Consensus 1283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~--k~i~~~~~h 1355 (2435)
.+...... . .... ..+. . ++++..++..+. |.|.+.|.... +.+..+...
T Consensus 196 ~~~~~~v~~~~t-------------~-----~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 196 PAAAGIVGAQCT-------------G-----AQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp CCCCEECCCCSC-------------T-----TSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred cccCCeEEEEee-------------e-----eeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 11100000 0 0000 1111 2 566666666666 99999998653 233322211
Q ss_pred ----------CCCeEEEEEecCCCEEEEEeC---------CCcEEEEeCCCCceEEEecccccceEEEEEeeCCC-EEEE
Q psy4869 1356 ----------KLPVLSLDMSYDSTLIATGSG---------DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTH-YFFT 1415 (2435)
Q Consensus 1356 ----------~~~V~~la~spdg~~L~sGg~---------Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~-~laS 1415 (2435)
......++++||++.++.+.. ++.+.++|+.+++.++.+.... ...+|+|+|++. +|++
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYA 331 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEE
Confidence 111222689999998887543 2356699999999998876543 588999999996 6777
Q ss_pred Ee-CCCcEEEEECCCceeEEEEee
Q psy4869 1416 TS-KDGRVKQWDADNFERIVTLHI 1438 (2435)
Q Consensus 1416 gg-~Dg~V~lWd~~~~~~l~~~~~ 1438 (2435)
.. .++.|.++|..+.+.+++++.
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~v 355 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCC
T ss_pred ccCCCCeEEEEECCCCcEEEEEEC
Confidence 77 699999999999999998863
No 277
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.81 E-value=3.4e-08 Score=123.36 Aligned_cols=301 Identities=14% Similarity=0.043 Sum_probs=187.9
Q ss_pred EEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCC
Q psy4869 1047 RVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS 1126 (2435)
Q Consensus 1047 ~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~ 1126 (2435)
.+..+|. |.+++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..+|. +++.+..+......
T Consensus 26 ~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 26 ILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp EECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred eEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 4445554 55666788899999 88877665554545567777776765 4445544 888886 56544333322222
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce
Q psy4869 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1206 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~ 1206 (2435)
.....+. +..+++++.++.|..+|.. ++...... .....+.++...+++. ++.++.++.|..+|.. ++.
T Consensus 100 ~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~------~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 100 VSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK------TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp -CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE------CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCE
T ss_pred ccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc------CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCE
Confidence 2223333 5567888889999999988 65544432 2333455566666665 6667788999999999 887
Q ss_pred eeEeeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEccccccc
Q psy4869 1207 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVN 1286 (2435)
Q Consensus 1207 ~~~~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~ 1286 (2435)
+..+......+.++...+++..++. + +.|..+| .+.+........
T Consensus 169 ~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~~------------------------------- 213 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYAG------------------------------- 213 (330)
T ss_dssp EEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECCS-------------------------------
T ss_pred eEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEccC-------------------------------
Confidence 7666655556667777666764443 3 7777777 443332211100
Q ss_pred ccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec
Q psy4869 1287 READEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp 1366 (2435)
...+.++...++| .+.+++.++.+..++. +++.+..+......+..+.+.+
T Consensus 214 ---------------------------~~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 264 (330)
T 3hxj_A 214 ---------------------------YWTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN 264 (330)
T ss_dssp ---------------------------SCCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT
T ss_pred ---------------------------CcceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC
Confidence 0123445556666 4556777788888874 5555555554444344455555
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1367 DSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1367 dg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
++ .|..|+.+|.|..+|. +++.+.........+.++..++++.+++ ++.+|.+++...+..+
T Consensus 265 ~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~-gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 265 TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYF-GTRNGKFYALFNLEHH 326 (330)
T ss_dssp TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEE-ECTTSCEEEEEC----
T ss_pred CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEE-EcCCCeEEEEeccccc
Confidence 55 5667788888999996 6777666655556678888888876555 8889999988877544
No 278
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.79 E-value=1e-07 Score=118.93 Aligned_cols=300 Identities=11% Similarity=0.019 Sum_probs=191.4
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCC-eEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccccccc
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGS-YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPAHSQE 969 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~-~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~h~~~ 969 (2435)
.++..+|...+.+.++.|..|| .+++.+.....+. .+.++.+.++++ |.+|+.+ |..+|. +|+.+..+..+...
T Consensus 25 ~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 25 PILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp CEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC----
T ss_pred ceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCc
Confidence 4555566655544577899999 8887766555333 335556555554 5666555 888886 77776665544333
Q ss_pred eeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEc
Q psy4869 970 LWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS 1049 (2435)
Q Consensus 970 V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~s 1049 (2435)
....... ++ .+..++.++.|..++.+ +....... .....+.++...
T Consensus 100 ~~~~~~~-~~-----------~l~v~t~~~~l~~~d~~-g~~~~~~~---------------------~~~~~~~~~~~~ 145 (330)
T 3hxj_A 100 VSDFTIF-ED-----------ILYVTSMDGHLYAINTD-GTEKWRFK---------------------TKKAIYATPIVS 145 (330)
T ss_dssp -CCEEEE-TT-----------EEEEECTTSEEEEECTT-SCEEEEEE---------------------CSSCCCSCCEEC
T ss_pred ccCceEE-CC-----------EEEEEecCCEEEEEcCC-CCEEEEEc---------------------CCCceeeeeEEc
Confidence 3333333 32 67778888989888865 32211100 011223445666
Q ss_pred CCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEE
Q psy4869 1050 PDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1129 (2435)
Q Consensus 1050 pdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~ 1129 (2435)
++|. |.+++.++.|..|+.. ++.+..+......+.++.+.+++.+++ ++ +.|..+| .+++.+.........+.+
T Consensus 146 ~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 146 EDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTR 219 (330)
T ss_dssp TTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSC
T ss_pred CCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceec
Confidence 6776 5567777999999998 777777765556677778877777555 44 8899999 788877777666666788
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeE
Q psy4869 1130 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS 1209 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~ 1209 (2435)
+...+++. |+.++.++.|..+|. ++....... .....+..+.+.+++ .|++++.+|.|..+|. +++.+..
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~------~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~ 289 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFK------TGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWN 289 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT-TSCEEEEEE------CSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEE
T ss_pred eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEee------CCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEE
Confidence 88887765 666677888888874 444443332 222223334454444 6777888889999996 6776666
Q ss_pred eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCC
Q psy4869 1210 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1246 (2435)
Q Consensus 1210 ~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~ 1246 (2435)
+......+.++...++++ |..++.+|.+++......
T Consensus 290 ~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 290 FETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 655555667777766665 667889999988776543
No 279
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.77 E-value=2.5e-07 Score=128.19 Aligned_cols=239 Identities=15% Similarity=0.132 Sum_probs=158.9
Q ss_pred CCCCCeeEEEEccCCCEEEEEe-----CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC--------
Q psy4869 403 GHTGAVMDLKFSTDGCHIFTCS-----TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-------- 469 (2435)
Q Consensus 403 ~h~~~V~~l~~s~dg~~L~s~s-----~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-------- 469 (2435)
+|...+..++|||||++|+-+. .+..|++||+++|+.+... .+......+.|+ ++..++.+...+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999888533 2357999999999865431 111113567899 887666554432
Q ss_pred ----CeEEEEeCCCCcc--eEeecC----cccEEEEEECCCCCEEEEEec----CCeEEEEECCCCc-EEEEEecCCCCE
Q psy4869 470 ----CTVKVWDPRKKNQ--AVSMNN----TYQVTSVAFNDTAECVLTGGI----DNDIKMWDLRTNS-VVQKLRGHSDTV 534 (2435)
Q Consensus 470 ----g~I~vwD~~~~~~--~~~~~~----~~~v~sv~~sp~g~~l~sgs~----dg~V~lwD~~s~~-~v~~l~~h~~~V 534 (2435)
..|++|++.++.. ...+.. ......+.|+|||++|+.... +..|+++|+.++. ....+..+.+..
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 3499999887653 222222 335778999999999876543 3589999998764 455666666666
Q ss_pred EEEEEcCCCCEEEEEE-CC---CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC---eEEE
Q psy4869 535 TGLSLSPDGSYILSNA-MD---NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK---CVYI 607 (2435)
Q Consensus 535 ~~i~~spdg~~las~s-~D---g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg---~V~i 607 (2435)
... |+++|..|+..+ .| +.|.++|+.... ......+..+.. .+. .|++++++|+....++ .|++
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~--~~~~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l~~ 354 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPG--PAHWRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARVEQ 354 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC--GGGCEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC--ccccEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEEEE
Confidence 555 677777666544 33 678889987421 112234444432 233 8999999888776543 7899
Q ss_pred EECCCCcEEEEec-CCCCCeeEEEEcCCCCEEEEEECC----CcEEEecCC
Q psy4869 608 WDTTTRRIAYKLP-GHNGSVNDVQFHPKEPIIMSASSD----KTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~-~h~~~V~~l~fspd~~~Lasgs~D----g~I~vWd~~ 653 (2435)
||+..+. ...+. .+.+.+..+.++++++.|+....+ +.|+.||+.
T Consensus 355 ~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 355 FDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp ECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 9987544 44443 345668888889888866655544 789999875
No 280
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.68 E-value=2.9e-06 Score=106.66 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=152.5
Q ss_pred cCCCEEEEEe-CCCeEEEEECCCC----ceEEEEec-------cCccccccCcccCCCeEEEEEeCC------CeEEEEe
Q psy4869 415 TDGCHIFTCS-TDQTLAVWDLEKG----QRIKKMKG-------HSTFVNSCDPVRRGQLLIASGSDD------CTVKVWD 476 (2435)
Q Consensus 415 ~dg~~L~s~s-~Dg~I~vwd~~tg----~~v~~l~~-------h~~~v~sv~~~~~~~~llasgs~D------g~I~vwD 476 (2435)
.++++|+..+ .++.|+++|+.+. +.++.+.. .......+...|++ +++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence 7788777655 5788999998755 56666630 11122334556777 55555544 7899999
Q ss_pred CCCCcceEeecCc----ccEEEEEECCCCCEEEEEe-------------------cCCeEEEEECCCCcEEEEEecC-C-
Q psy4869 477 PRKKNQAVSMNNT----YQVTSVAFNDTAECVLTGG-------------------IDNDIKMWDLRTNSVVQKLRGH-S- 531 (2435)
Q Consensus 477 ~~~~~~~~~~~~~----~~v~sv~~sp~g~~l~sgs-------------------~dg~V~lwD~~s~~~v~~l~~h-~- 531 (2435)
..+.+.+...... ..-..+.|+|+++.+++.. .+.+|.+||+.+++.+.++... .
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g 250 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN 250 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence 9999988887532 2244678899999888874 3789999999999888888642 2
Q ss_pred CCEEEEEE--cCCCCEEEEEE------CCCcEEEEEcCCCCCCCceEEEEe--Ccc--cc----------cccCeEEEEE
Q psy4869 532 DTVTGLSL--SPDGSYILSNA------MDNTVRIWDIRPYVPGERCVKVMS--GHQ--HN----------FEKNLLRCAW 589 (2435)
Q Consensus 532 ~~V~~i~~--spdg~~las~s------~Dg~I~lWdl~~~~~~~~~v~~~~--~h~--~~----------~~~~i~~v~~ 589 (2435)
.....|.| +|+|++++.++ .+++|.+|..... .....+.+. ... .. .......+.+
T Consensus 251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g--~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l 328 (462)
T 2ece_A 251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG--KWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI 328 (462)
T ss_dssp EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT--EEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC--ceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence 23456666 99999988766 5678888776521 112222221 100 00 0134677899
Q ss_pred cCCCCEEEEecC-CCeEEEEECC---CCcEEEEecCCC--------------CCeeEEEEcCCCCEEEEEE
Q psy4869 590 SVSGLYVTAGSA-DKCVYIWDTT---TRRIAYKLPGHN--------------GSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 590 spdg~~Lasgs~-Dg~V~iwd~~---s~~~~~~l~~h~--------------~~V~~l~fspd~~~Lasgs 642 (2435)
|+||++|+++.. .+.|.+||+. +.+++..+.-.. +....++++|||++|+++.
T Consensus 329 S~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 329 SLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999988765 6899999985 345665554321 1368899999999999887
No 281
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.65 E-value=1.4e-05 Score=96.64 Aligned_cols=249 Identities=8% Similarity=0.023 Sum_probs=159.6
Q ss_pred CEEEEEeCCCeEEEEecCCceee----EEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccCcc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECEN----IGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTF 449 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~~----~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~~~ 449 (2435)
.+|+.+.. +.|+.+++.+.... ...+......+..++|++++..|+.+. .++.|..+|+..+.....+......
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 47888887654221 111211234578999999766666554 5689999999766544333333345
Q ss_pred ccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecC-cccEEEEEECCCCCEEEEEec---CCeEEEEECCCCcEEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNN-TYQVTSVAFNDTAECVLTGGI---DNDIKMWDLRTNSVVQ 525 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~-~~~v~sv~~sp~g~~l~sgs~---dg~V~lwD~~s~~~v~ 525 (2435)
...+++.+.+..++++-...+.|.++++........... ......++++|++..|+.+.. .+.|..+++..... .
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~ 159 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R 159 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence 667888887778888888889999999875443322222 246789999998777766654 36898998764332 2
Q ss_pred EE-ecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC
Q psy4869 526 KL-RGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK 603 (2435)
Q Consensus 526 ~l-~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg 603 (2435)
.+ ...-.....+++++++.+|+.+. ..+.|.++|+.. ........+. .....++.. ++..+++....+
T Consensus 160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g----~~~~~~~~~~-----~~P~gi~~d-~~~lyva~~~~~ 229 (267)
T 1npe_A 160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ----PGRRKVLEGL-----QYPFAVTSY-GKNLYYTDWKTN 229 (267)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE----EEEEEEEECC-----CSEEEEEEE-TTEEEEEETTTT
T ss_pred EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC----CceEEEecCC-----CCceEEEEe-CCEEEEEECCCC
Confidence 22 23334678999999887766555 568999999863 2222222221 123455554 344444445678
Q ss_pred eEEEEECCCCcEEEEecCCC-CCeeEEEEcCCC
Q psy4869 604 CVYIWDTTTRRIAYKLPGHN-GSVNDVQFHPKE 635 (2435)
Q Consensus 604 ~V~iwd~~s~~~~~~l~~h~-~~V~~l~fspd~ 635 (2435)
.|.++|..+++.+..+.... .....+++.|++
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 99999999999988886433 347788888775
No 282
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.61 E-value=4.3e-07 Score=118.01 Aligned_cols=311 Identities=13% Similarity=0.077 Sum_probs=197.2
Q ss_pred EEEEEeCCCeEEEEEccccccccc-------------cccccccccccc------ceeeeeeccccccCCCEEEEEEcC-
Q psy4869 991 QVVTGGGDKSVKLWQLELVSVNRE-------------ADEETKDVSRSH------KVLSLLHTRTLKLEEQVLCARVSP- 1050 (2435)
Q Consensus 991 ~l~sgs~Dg~V~lW~l~~~~~~~~-------------~~~~~~~~~~~~------~~l~~~~~~~~~~~~~v~~l~~sp- 1050 (2435)
.|.+|+..|.|+++-+..+..... ..++++++.... +.+...-...+. .+......+|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~-~gd~hh~~~s~t 95 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD-NGDLHHVHMSFT 95 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC-CCCBCCEEEEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc-cCCCCccccCCC
Confidence 789999999999999865532211 122222222110 000000000011 12222355565
Q ss_pred ----CCCEEEEEECC-CcEEEEEcCCCeEEEEEec-CCcCEEEEEE-c-CCCCEEEEEEC------------------CC
Q psy4869 1051 ----DSKLLAVSLLD-TTVKIFFLDTFKFFISLYG-HKLPVLSLDM-S-YDSTLIATGSG------------------DR 1104 (2435)
Q Consensus 1051 ----dg~~Lavg~~d-g~V~i~d~~~~~~~~~l~~-h~~~V~sl~~-s-pdg~~L~Sgs~------------------Dg 1104 (2435)
||++|++...+ +.|.+.|+++.+....+.- .......+++ . |++++++++++ ++
T Consensus 96 ~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~ 175 (595)
T 1fwx_A 96 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 175 (595)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEE
T ss_pred CCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCc
Confidence 89999998764 6799999999998885542 2245788888 5 89999988852 45
Q ss_pred cEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC---------------cEEEEeCCCcceeEEEEEEEeec
Q psy4869 1105 TVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG---------------RVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1105 ~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg---------------~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.+.++|.++.+.+.++..-. .-..++++|+++++++++.+. .|.++|......
T Consensus 176 ~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~----------- 243 (595)
T 1fwx_A 176 VFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK----------- 243 (595)
T ss_dssp EEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH-----------
T ss_pred eEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE-----------
Confidence 79999999999888886433 346778999999999988763 233333222110
Q ss_pred ccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC--Cce-eeEeeccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCC
Q psy4869 1170 GHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY--GDC-HKSLLAHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADN 1245 (2435)
Q Consensus 1170 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t--~~~-~~~~~~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~ 1245 (2435)
+.++|+.... +.|.+.|.++ ++. +..+.. .....++.++||++++++++ .+.+|.++|+.+
T Consensus 244 ----------~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 244 ----------AIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp ----------HHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred ----------eccCCCeeEE----CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence 1223443333 5599999998 555 455543 33567899999999888776 577788887764
Q ss_pred CceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC
Q psy4869 1246 FERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD 1325 (2435)
Q Consensus 1246 ~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd 1325 (2435)
.+... +++ +. . ..........+...+.++|+|+
T Consensus 309 ~~~~~---------------------~~~-----l~---------~------------~~~v~~~v~vG~gP~h~aF~~d 341 (595)
T 1fwx_A 309 FDAVF---------------------YEN-----AD---------P------------RSAVVAEPELGLGPLHTAFDGR 341 (595)
T ss_dssp HHHHH---------------------HSC-----CC---------G------------GGGEEECCBCCSCEEEEEECTT
T ss_pred ccccc---------------------ccc-----cC---------c------------ccceEEEcCCCCCcceEEECCC
Confidence 32110 000 00 0 0000112344566788999999
Q ss_pred cceeEEeecCCeEEEEEccc----------ceEEEEecCCCCCe-E----EEEEecCCCEEEEEeC
Q psy4869 1326 SKLLAVSLLDTTVKIFFLDT----------FKFFISLYGHKLPV-L----SLDMSYDSTLIATGSG 1376 (2435)
Q Consensus 1326 g~~lavgs~dG~V~v~d~~~----------~k~i~~~~~h~~~V-~----~la~spdg~~L~sGg~ 1376 (2435)
|..+.+...++.|.+||+++ .+.+..+..|..+- . .+.++|||++|++...
T Consensus 342 G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 342 GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 96667788999999999987 56788888776542 1 2245899999998754
No 283
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.60 E-value=2.2e-06 Score=117.53 Aligned_cols=301 Identities=17% Similarity=0.144 Sum_probs=186.8
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI 963 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~ 963 (2435)
+++.++...++.|.-+|..+++.+..++.... ...+++ .+..|++++.|+.|+.+|.++|+++..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 56555555678899999999999988764321 112233 3567888999999999999999988776
Q ss_pred ccccc-ceeEEEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEccccccccccccccccc--ccccceee-eee
Q psy4869 964 PAHSQ-ELWSVAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDV--SRSHKVLS-LLH 1033 (2435)
Q Consensus 964 ~~h~~-~V~sv~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~--~~~~~~l~-~~~ 1033 (2435)
..... ....+...|- -.+..++.+.. +|.|..+|...++..+......... ......+. ...
T Consensus 144 ~~~~~~~~~~~~~~P~--------v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPR--------VVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp ECSCTTSSCBCCSCCE--------EETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ccCCCCCcceecCCCE--------EECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 44211 0000000000 00124555543 5899999998777655432110000 00000000 000
Q ss_pred cc----cc---ccCCCEEEEEEcCCCCEEEEEECCC-------------------cEEEEEcCCCeEEEEEec--CC---
Q psy4869 1034 TR----TL---KLEEQVLCARVSPDSKLLAVSLLDT-------------------TVKIFFLDTFKFFISLYG--HK--- 1082 (2435)
Q Consensus 1034 ~~----~~---~~~~~v~~l~~spdg~~Lavg~~dg-------------------~V~i~d~~~~~~~~~l~~--h~--- 1082 (2435)
.. .. ........+++++++.+++++..++ .|..+|.++++.+..++. |.
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd 295 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWD 295 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCcccc
Confidence 00 00 0011223578999989999987665 389999999998888764 32
Q ss_pred ----cCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccCC------------C-----------------
Q psy4869 1083 ----LPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHED------------S----------------- 1126 (2435)
Q Consensus 1083 ----~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~------------~----------------- 1126 (2435)
.+.....+..+|+ .++.++.+|.++++|..+|+.+........ +
T Consensus 296 ~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p 375 (668)
T 1kv9_A 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (668)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECC
Confidence 3333334444665 688899999999999999998855432110 0
Q ss_pred -------EEEEEEccCCCEEEEEe------------------------------------CCCcEEEEeCCCcceeEEEE
Q psy4869 1127 -------VTGVTFVPKTHYFFTTS------------------------------------KDGRVKQWDADNFERIVTLH 1163 (2435)
Q Consensus 1127 -------V~~v~fsp~~~~l~s~s------------------------------------~Dg~V~iwD~~~~~~~~~~~ 1163 (2435)
-..++++|+...+++.. .++.|..||..+++.+....
T Consensus 376 ~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~ 455 (668)
T 1kv9_A 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (668)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred CCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc
Confidence 01267777766665421 34789999999998877664
Q ss_pred EEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeecc
Q psy4869 1164 FFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAH 1213 (2435)
Q Consensus 1164 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h 1213 (2435)
. ..+.....+...+.+++.|+.|+.|+.||.++++.+..+...
T Consensus 456 ~-------~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 456 Y-------PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp E-------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred C-------CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 1 122222333446789999999999999999999998887654
No 284
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.59 E-value=4.8e-08 Score=124.43 Aligned_cols=187 Identities=14% Similarity=0.066 Sum_probs=107.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcc--cEE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTY--QVT 493 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~--~v~ 493 (2435)
++..|++++.|+.|+.||..+|+.+..+.. ..+.+..+..++ .++++++.|+.|+.||..+++.+....... .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCC-CEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 577899999999999999999999888876 445454445444 456677899999999999888776653321 111
Q ss_pred -EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEE
Q psy4869 494 -SVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKV 572 (2435)
Q Consensus 494 -sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~ 572 (2435)
+..+ ..+..+++|+.++.|+.||.++|+.+..+..+. .+.++|++..+++++.|+.|+.||.++.. .+-.
T Consensus 85 ~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~----~~W~ 155 (369)
T 2hz6_A 85 ASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE----LRWN 155 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSS----CCCE
T ss_pred cCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCC----EEEe
Confidence 0111 145678888899999999999999988776554 24566788999999999999999998532 2211
Q ss_pred EeCcccccccCeEEEEEcCCC---CEEEEecCCCeEEEEECCCCcEEEEec
Q psy4869 573 MSGHQHNFEKNLLRCAWSVSG---LYVTAGSADKCVYIWDTTTRRIAYKLP 620 (2435)
Q Consensus 573 ~~~h~~~~~~~i~~v~~spdg---~~Lasgs~Dg~V~iwd~~s~~~~~~l~ 620 (2435)
+.... .....+..++ ..+++++.||.|+.||.++|+.+....
T Consensus 156 ~~~~~------~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 156 ATYFD------YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEE------ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred Eeccc------ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 11110 0111223322 457778899999999999999887765
No 285
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.58 E-value=6.5e-06 Score=110.57 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=188.4
Q ss_pred CCcEEEEec-CCcEEEEeC-CCCceeEEEeCCCe------------EEEEEEecCCCEEEEEeCCCeEEEEEccCCceee
Q psy4869 896 DNLALVSAC-ASQVKIWNR-PSLSCLRTIDTGSY------------ALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILE 961 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~-~~~~~~~~l~~~~~------------v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~ 961 (2435)
+++.++... ++.|.-+|. .+++.+..++.... ...+++ ++..|+++..++.|+.+|.++|+++.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 555555555 678999999 99999987764321 112232 36678889999999999999999886
Q ss_pred ccccccc----ceeE-EEEecCCCCCCCcCCcceEEEEEeC------CCeEEEEEcccccccccccccccccc----c--
Q psy4869 962 DIPAHSQ----ELWS-VAMLPDQFNPNVYLPLQIQVVTGGG------DKSVKLWQLELVSVNREADEETKDVS----R-- 1024 (2435)
Q Consensus 962 ~~~~h~~----~V~s-v~~s~d~~~~~~~~p~~~~l~sgs~------Dg~V~lW~l~~~~~~~~~~~~~~~~~----~-- 1024 (2435)
....... .+.+ .... + ..++.+.. +|.|..+|...++..+.......... .
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~-~-----------g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~ 207 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVA-K-----------DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDF 207 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEE-T-----------TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred EecCCCCCccceeccCCEEE-C-----------CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccc
Confidence 6542210 1110 0111 2 25555554 78999999987765544221110000 0
Q ss_pred --ccce-------eeeeeccccccCC--CEEEEEEcCCCCEEEEEECC----------------CcEEEEEcCCCeEEEE
Q psy4869 1025 --SHKV-------LSLLHTRTLKLEE--QVLCARVSPDSKLLAVSLLD----------------TTVKIFFLDTFKFFIS 1077 (2435)
Q Consensus 1025 --~~~~-------l~~~~~~~~~~~~--~v~~l~~spdg~~Lavg~~d----------------g~V~i~d~~~~~~~~~ 1077 (2435)
.... ............+ ....++++++...++++..+ +.|..+|.++++.+..
T Consensus 208 ~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~ 287 (571)
T 2ad6_A 208 NSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWG 287 (571)
T ss_dssp TTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEE
T ss_pred ccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEE
Confidence 0000 0000000000001 11235677877778777642 2589999999998887
Q ss_pred Eec--C--------CcCEEEEEEcCCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-------------CCE----
Q psy4869 1078 LYG--H--------KLPVLSLDMSYDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE-------------DSV---- 1127 (2435)
Q Consensus 1078 l~~--h--------~~~V~sl~~spdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-------------~~V---- 1127 (2435)
++. | ..++. +....+|+ .++.++.+|.+.++|.++|+.+....... .++
T Consensus 288 ~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 288 YQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp EESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 753 2 12332 23234673 57788999999999999999887764321 111
Q ss_pred ----------------------EEEEEccCCCEEEEEe-------------------------------------CCCcE
Q psy4869 1128 ----------------------TGVTFVPKTHYFFTTS-------------------------------------KDGRV 1148 (2435)
Q Consensus 1128 ----------------------~~v~fsp~~~~l~s~s-------------------------------------~Dg~V 1148 (2435)
..++|+|+...+++.. .++.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 2357788777776653 34789
Q ss_pred EEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEEEEeeCCC
Q psy4869 1149 KQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGVTFVPKTH 1227 (2435)
Q Consensus 1149 ~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i~~spd~~ 1227 (2435)
..||..+++.+..... ...+....+...+..++.++.||.|+.||.++|+.+..+...... ...+.+..+++
T Consensus 447 ~a~D~~tG~~~W~~~~-------~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~ 519 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWE-------KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGK 519 (571)
T ss_dssp EEECTTTCCEEEEEEE-------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred EEEECCCCCEEEEecC-------CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCE
Confidence 9999999988776641 112222222224668888999999999999999998887643321 12233445665
Q ss_pred EEEE
Q psy4869 1228 YFFT 1231 (2435)
Q Consensus 1228 ~lvs 1231 (2435)
+++.
T Consensus 520 ~yv~ 523 (571)
T 2ad6_A 520 QYIG 523 (571)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 286
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.57 E-value=7.9e-06 Score=109.54 Aligned_cols=315 Identities=14% Similarity=0.099 Sum_probs=190.2
Q ss_pred CCcEEEEec-CCcEEEEeC-CCCceeEEEeCCCe------------EEEEEEecCCCE----EEEEeCCCeEEEEEccCC
Q psy4869 896 DNLALVSAC-ASQVKIWNR-PSLSCLRTIDTGSY------------ALSVCFVPGDRH----VLVGTKDGRLLIVDIGAG 957 (2435)
Q Consensus 896 dg~~la~g~-~~~V~Iwd~-~~~~~~~~l~~~~~------------v~~vafspdg~~----Lavg~~dg~V~vwd~~sg 957 (2435)
+++.+++.. ++.|.-+|. .+++.+..++.... ...++++|.+.. |++++.|+.|+.+|.++|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 555555555 678999999 89999988774321 234566554444 888999999999999999
Q ss_pred ceeeccccccc----ceeE-EEEecCCCCCCCcCCcceEEEEEe------CCCeEEEEEcccccccccccccccccc---
Q psy4869 958 EILEDIPAHSQ----ELWS-VAMLPDQFNPNVYLPLQIQVVTGG------GDKSVKLWQLELVSVNREADEETKDVS--- 1023 (2435)
Q Consensus 958 ~~v~~~~~h~~----~V~s-v~~s~d~~~~~~~~p~~~~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~--- 1023 (2435)
+++........ .+.+ .... + ..++.++ .+|.|+.+|...++.............
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-----------g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~ 209 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVV-K-----------DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLL 209 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEE-T-----------TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTB
T ss_pred CEEEeecCCCCCccceeecCCEEE-C-----------CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccc
Confidence 98866533210 1111 1111 2 2555555 379999999987776554322111100
Q ss_pred -cc----ccee-------eeeeccccccCC-C-EEEEEEcCCCCEEEEEECCC----------------cEEEEEcCCCe
Q psy4869 1024 -RS----HKVL-------SLLHTRTLKLEE-Q-VLCARVSPDSKLLAVSLLDT----------------TVKIFFLDTFK 1073 (2435)
Q Consensus 1024 -~~----~~~l-------~~~~~~~~~~~~-~-v~~l~~spdg~~Lavg~~dg----------------~V~i~d~~~~~ 1073 (2435)
.. ...+ ...........+ . -..+++.++..+++++..++ .|..+|.++++
T Consensus 210 ~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~ 289 (599)
T 1w6s_A 210 ASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE 289 (599)
T ss_dssp CTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC
T ss_pred ccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc
Confidence 00 0000 000000011111 1 12457778888888887653 79999999999
Q ss_pred EEEEEecCC----------cCEEEEEEc-CCC---CEEEEEECCCcEEEEEccCCceeEEEeccC-------------CC
Q psy4869 1074 FFISLYGHK----------LPVLSLDMS-YDS---TLIATGSGDRTVKVWGLDYGDCHKSLLAHE-------------DS 1126 (2435)
Q Consensus 1074 ~~~~l~~h~----------~~V~sl~~s-pdg---~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~-------------~~ 1126 (2435)
.+-.++... .++. +... .+| ..++.++.+|.+.++|.++|+.+....... .+
T Consensus 290 ~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 290 AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 888776421 2232 2332 467 467778999999999999999887664211 11
Q ss_pred E--------------------------EEEEEccCCCEEEEEe-------------------------------------
Q psy4869 1127 V--------------------------TGVTFVPKTHYFFTTS------------------------------------- 1143 (2435)
Q Consensus 1127 V--------------------------~~v~fsp~~~~l~s~s------------------------------------- 1143 (2435)
+ ..++|+|+..++++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 1 2356666655554421
Q ss_pred --CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCC-EEEE
Q psy4869 1144 --KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS-VTGV 1220 (2435)
Q Consensus 1144 --~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~-V~~i 1220 (2435)
.++.|..||+.+++.+..... ..++..-.+.-.+.+++.++.|+.++.||.++|+.+..++-.... ..-+
T Consensus 449 ~~~~G~l~A~D~~tG~~~W~~~~-------~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~ 521 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDYKWEKME-------RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM 521 (599)
T ss_dssp TBCCEEEEEECTTTCCEEEEEEE-------SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCcCeEEEEECCCCCEEeEecC-------CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccE
Confidence 347899999999988776641 111111112224678888999999999999999998887643321 1224
Q ss_pred EEeeCCCEEE
Q psy4869 1221 TFVPKTHYFF 1230 (2435)
Q Consensus 1221 ~~spd~~~lv 1230 (2435)
.|..++++.+
T Consensus 522 ~y~~~G~qyv 531 (599)
T 1w6s_A 522 TYTHKGTQYV 531 (599)
T ss_dssp EEEETTEEEE
T ss_pred EEEeCCEEEE
Confidence 4555665443
No 287
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.57 E-value=0.02 Score=82.37 Aligned_cols=464 Identities=13% Similarity=0.070 Sum_probs=237.2
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeC--CCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc-cccccceeEEEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDT--GSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI-PAHSQELWSVAM 975 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~--~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~-~~h~~~V~sv~~ 975 (2435)
.++--+.+.|++.+....+.+..... +..+...+ -++..|+++. ++.+.++++.++++.... ..-..+|.|+++
T Consensus 485 ~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As--~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i 561 (1158)
T 3ei3_A 485 QLIQITSASVRLVSQEPKALVSEWKEPQAKNISVAS--CNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDI 561 (1158)
T ss_dssp EEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEE--ECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEEC
T ss_pred eEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEE--eCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEe
Confidence 33344445566666555445544442 23343333 2345777774 678888888777643221 112457999998
Q ss_pred ecCCCCCCCcCCcceEEEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
.+..... .....++.|.. |+.|++++++..+.... .. +. . -.....+.-+.+ ....+
T Consensus 562 ~~~~~~~----~~s~~~aVg~~~d~tv~I~sL~~l~~~~~-----~~-------L~---~--~~~p~si~l~~~-~~~~~ 619 (1158)
T 3ei3_A 562 TPLGDSN----GLSPLCAIGLWTDISARILKLPSFELLHK-----EM-------LG---G--EIIPRSILMTTF-ESSHY 619 (1158)
T ss_dssp CCCSSST----TCCSEEEEEETTTTEEEEEETTTCCEEEE-----EE-------CC---S--SCCEEEEEEEEE-TTEEE
T ss_pred ecCCCCc----ccccEEEEEECCCCEEEEEECCCCCeEEE-----EE-------CC---C--CCCCcEEEEEEe-CCCcE
Confidence 7642101 12357888886 99999999864321100 00 00 0 001122333334 23468
Q ss_pred EEEEECCCcEEEEEcC--CCeEEEE---EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEE
Q psy4869 1055 LAVSLLDTTVKIFFLD--TFKFFIS---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1129 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~--~~~~~~~---l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~ 1129 (2435)
|.+|..||.+..+.++ ++++... +-| ..++.=..+...+..-+-+..+.-..++.-+ ++....-.....--..
T Consensus 620 L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~ 697 (1158)
T 3ei3_A 620 LLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYM 697 (1158)
T ss_dssp EEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEE
T ss_pred EEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceE
Confidence 9999999998777664 4444322 223 3344444444444433333445555555433 3322221111112234
Q ss_pred EEEccC--CCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCcee
Q psy4869 1130 VTFVPK--THYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1207 (2435)
Q Consensus 1130 v~fsp~--~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~ 1207 (2435)
..|+.. .+-++..+ ++.+++..+......... . ..-...+..++++|+.+.++++..+. ..++.......
T Consensus 698 ~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~----~-ipL~~Tprri~y~~~~~~~~v~~~~~--~~~~~~~~~~~ 769 (1158)
T 3ei3_A 698 CPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIR----T-VPLYESPRKICYQEVSQCFGVLSSRI--EVQDTSGGTTA 769 (1158)
T ss_dssp EEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEE----E-EECSSEEEEEEEEGGGTEEEEEEEEE--EEECSSSSEEE
T ss_pred eccCcccCCCcEEEEc-CCceEEEEecccCCeeEE----E-EeCCCCceEEEEcCCCCEEEEEEEec--cccccccccch
Confidence 445432 23344433 456999988654332211 1 12345788899998888777665332 11121100000
Q ss_pred ----------eEe-----------------eccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEeeCCcccc
Q psy4869 1208 ----------KSL-----------------LAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYL 1260 (2435)
Q Consensus 1208 ----------~~~-----------------~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~ 1260 (2435)
... .+......++.+.... .-..+.-+++...+.+..+..-... .
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~-------t~~~i~~~~l~~nE~~~sv~~v~~~-~ 841 (1158)
T 3ei3_A 770 LRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH-------TFEVLHAHQFLQNEYALSLVSCKLG-K 841 (1158)
T ss_dssp SSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT-------TCCEEEEEECCTTEEEEEEEEECCT-T
T ss_pred hhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC-------CCeEEEEEeCCCCcceEEEEEEEEc-c
Confidence 000 0000112233222110 1123445566655554443211110 0
Q ss_pred cCceEEEEEE----------CCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeE
Q psy4869 1261 PLQIQVVTGG----------GDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1330 (2435)
Q Consensus 1261 ~~~~~lv~g~----------~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~la 1330 (2435)
.....+++|. ..|.+.+|++... ... .......++.+.+++-. +| +|+
T Consensus 842 ~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~------------------kL~--lv~~~~v~g~v~al~~~-~g-~Ll 899 (1158)
T 3ei3_A 842 DPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG------------------KLQ--TVAEKEVKGAVYSMVEF-NG-KLL 899 (1158)
T ss_dssp CCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT------------------EEE--EEEEEEESSCEEEEEEE-TT-EEE
T ss_pred CCCEEEEEEeeecCCCCCCCCceEEEEEEEECC------------------EEE--EEEEEEcCCcCEEEeee-CC-EEE
Confidence 1223555554 3467888887410 111 11223456788888654 34 444
Q ss_pred EeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeC--CCCceEEEec-ccccceEEEEEe
Q psy4869 1331 VSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGL--DYGDCHKSLL-AHEDSVTGVTFV 1407 (2435)
Q Consensus 1331 vgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl--~~gk~~~~~~-~h~~~V~~laf~ 1407 (2435)
+| ....|++|++...+.+..-..+...|..+.....+++|+.|+.-..|.++.+ ..+++.-..+ .+..||+++.|-
T Consensus 900 a~-ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~l 978 (1158)
T 3ei3_A 900 AS-INSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 978 (1158)
T ss_dssp EE-ETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEE
T ss_pred EE-cCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEE
Confidence 43 4689999999876544311112222334444446789999998888777554 4455544333 356799999998
Q ss_pred eCCCEEEEEeCCCcEEEEECCC
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
.+. .++.+..+|.|.+...+.
T Consensus 979 d~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 979 DDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp ETT-EEEEEETTSEEEEEEECT
T ss_pred ccC-cEEEEcCCCcEEEEecCC
Confidence 654 777789999998887764
No 288
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.54 E-value=6.9e-06 Score=112.68 Aligned_cols=290 Identities=14% Similarity=0.136 Sum_probs=180.5
Q ss_pred CCEEEEEECCCcEEEEEccCCceeEEEeccCCC----------E-EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1094 STLIATGSGDRTVKVWGLDYGDCHKSLLAHEDS----------V-TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1094 g~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~----------V-~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
+..|+.++.++.|..+|..+|+.+..+...... + ..+.+ .+..+++++.|+.|..+|..+++.+...
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 456777888999999999999998887543210 0 12223 2557888889999999999999988876
Q ss_pred EEEEeecccccCeEE-EEEeCCCCEEEEEeC------CCcEEEEEccCCceeeEeeccC---C-----------------
Q psy4869 1163 HFFISLYGHKLPVLS-LDMSYDSTLIATGSG------DRTVKVWGLDYGDCHKSLLAHE---D----------------- 1215 (2435)
Q Consensus 1163 ~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs~------Dg~V~iwd~~t~~~~~~~~~h~---~----------------- 1215 (2435)
.... ......+.+ ..+ .+..++++.. +|.|+.+|.++|+.+..+.... .
T Consensus 144 ~~~~--~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 219 (668)
T 1kv9_A 144 QTTD--PAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQG 219 (668)
T ss_dssp ECSC--TTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCS
T ss_pred ccCC--CCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCc
Confidence 5210 000011110 011 1345666543 5899999999999887764210 0
Q ss_pred -----------CEEEEEEeeCCCEEEEEECCCc-------------------EEEEECCCCceEEEEeeCCcccccCceE
Q psy4869 1216 -----------SVTGVTFVPKTHYFFTTSKDGR-------------------VKQWDADNFERIVTLHFNPNVYLPLQIQ 1265 (2435)
Q Consensus 1216 -----------~V~~i~~spd~~~lvsgs~Dg~-------------------I~vwD~~~~~~v~~~~~~~~~~~~~~~~ 1265 (2435)
....+.+.++...++.+..++. |..+|.++++.+..++.....
T Consensus 220 ~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~------- 292 (668)
T 1kv9_A 220 DQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGD------- 292 (668)
T ss_dssp SCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTC-------
T ss_pred cceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCc-------
Confidence 0123567777777777766553 444555444443333221100
Q ss_pred EEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcc---eeEEeecCCeEEEEE
Q psy4869 1266 VVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK---LLAVSLLDTTVKIFF 1342 (2435)
Q Consensus 1266 lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~---~lavgs~dG~V~v~d 1342 (2435)
.||. ..........+..+|+ .+++++.+|.++++|
T Consensus 293 -----------~wd~-------------------------------~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD 330 (668)
T 1kv9_A 293 -----------SWDF-------------------------------TATQQITLAELNIDGKPRKVLMQAPKNGFFYVLD 330 (668)
T ss_dssp -----------CSCC-------------------------------CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred -----------cccc-------------------------------cCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEE
Confidence 0000 0011111122223564 688899999999999
Q ss_pred cccceEEEEecCCCC------------Ce------------------------EEEEEecCCCEEEEE------------
Q psy4869 1343 LDTFKFFISLYGHKL------------PV------------------------LSLDMSYDSTLIATG------------ 1374 (2435)
Q Consensus 1343 ~~~~k~i~~~~~h~~------------~V------------------------~~la~spdg~~L~sG------------ 1374 (2435)
..+++++........ ++ ..++++|+..+++..
T Consensus 331 ~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~ 410 (668)
T 1kv9_A 331 RTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEG 410 (668)
T ss_dssp TTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCG
T ss_pred CCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeec
Confidence 999998754432110 00 126788887766642
Q ss_pred ------------------------eCCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1375 ------------------------SGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1375 ------------------------g~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
..+|.|..||+.+|+.+-+.+.+ .++....+...+.+++.++.||.|+.||..+.
T Consensus 411 ~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 411 KDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp GGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 13478999999999987665543 33444555567888888999999999999999
Q ss_pred eeEEEEeec
Q psy4869 1431 ERIVTLHIC 1439 (2435)
Q Consensus 1431 ~~l~~~~~~ 1439 (2435)
+.+.++...
T Consensus 490 ~~l~~~~~~ 498 (668)
T 1kv9_A 490 EALWQFEAQ 498 (668)
T ss_dssp CEEEEEECS
T ss_pred hhheEecCC
Confidence 999988743
No 289
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.52 E-value=2.8e-08 Score=126.63 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=115.2
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCC-CEE-
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SVT- 1128 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~-~V~- 1128 (2435)
++..|++++.||.|+.||..+++.+..+.. ..+.+..+..++..+++++.||.|+.||.++|+.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 578899999999999999999999888876 4555555566777888888999999999999988776643211 010
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceee
Q psy4869 1129 GVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1129 ~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~ 1208 (2435)
...+. .+..+++++.|+.|+.||..+++.+..+. .+. ...++|++..+++++.|+.|+.||.++|+.+.
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~------~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLS------SAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEec------CCC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 00111 34567888889999999999998876653 111 12345678899999999999999999999776
Q ss_pred EeeccCCCEEEEEEeeCC---CEEEEEECCCcEEEEECCCCceEEEEeeC
Q psy4869 1209 SLLAHEDSVTGVTFVPKT---HYFFTTSKDGRVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1209 ~~~~h~~~V~~i~~spd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~ 1255 (2435)
.+..+. .....+.++. ..+++++.||.|..||.++++.+......
T Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 202 (369)
T 2hz6_A 155 NATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA 202 (369)
T ss_dssp EEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS
T ss_pred eEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC
Confidence 654321 1122233321 56788899999999999999887776643
No 290
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.49 E-value=1.6e-05 Score=100.00 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=149.7
Q ss_pred CCCCEEEE-EeCCCeEEEEecCCc---eeeEEEee------C-CCCCeeEEEEccCCCEEEEEeCC------CeEEEEEC
Q psy4869 372 PDGQYIAS-SGYDRQIFIWSVYGE---CENIGVMS------G-HTGAVMDLKFSTDGCHIFTCSTD------QTLAVWDL 434 (2435)
Q Consensus 372 pdg~~Las-gs~Dg~I~iwd~~~~---~~~~~~l~------~-h~~~V~~l~~s~dg~~L~s~s~D------g~I~vwd~ 434 (2435)
+++++|+. |..+++|.++|+... .+....+. . -...-..+...|+| .++++..+ +.|.+.|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67777665 557889999998633 12222231 1 11245667888999 76666555 78999999
Q ss_pred CCCceEEEEeccCc---cccccCcccCCCeEEEEE------------------eCCCeEEEEeCCCCcceEeecCc---c
Q psy4869 435 EKGQRIKKMKGHST---FVNSCDPVRRGQLLIASG------------------SDDCTVKVWDPRKKNQAVSMNNT---Y 490 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~---~v~sv~~~~~~~~llasg------------------s~Dg~I~vwD~~~~~~~~~~~~~---~ 490 (2435)
++++.+.++..... .-..+.|+|+++.++.+- ..+.+|.+||+.+++.+..+... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999998863321 223456688887555442 24789999999988777766543 3
Q ss_pred cEEEEEE--CCCCCEEEEEec------CCeEEEEECCCCcE--EEEE--ecC----------------CCCEEEEEEcCC
Q psy4869 491 QVTSVAF--NDTAECVLTGGI------DNDIKMWDLRTNSV--VQKL--RGH----------------SDTVTGLSLSPD 542 (2435)
Q Consensus 491 ~v~sv~~--sp~g~~l~sgs~------dg~V~lwD~~s~~~--v~~l--~~h----------------~~~V~~i~~spd 542 (2435)
....++| +|+++++++++. ++.|.+|....++. +..+ ... ......|.++||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4555656 999999998874 56888776655432 1111 110 245788999999
Q ss_pred CCEEEEEEC-CCcEEEEEcCCCCCCCceEEEEeCcc----------cccccCeEEEEEcCCCCEEEEec
Q psy4869 543 GSYILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQ----------HNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 543 g~~las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~----------~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
|++|+++.. .+.|.+||+... ...+.+..+.... .........+.++|||++|++..
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~-~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNP-FKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSST-TSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCC-CCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999998775 789999999632 1234444443210 00111346789999999999887
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.46 E-value=0.02 Score=77.30 Aligned_cols=466 Identities=8% Similarity=0.015 Sum_probs=244.0
Q ss_pred eeeCCCCceEEEEEeCCCCcEEEEe-cCCcEEEEEcCccccccccCCccccceecCCCccceEEEeecCCCCeEEEEE-c
Q psy4869 18 IIASPNCNVVFVTLKNQEGRFLATG-ASEDVIIWDLRLAEKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAY-T 95 (2435)
Q Consensus 18 ~~~~~~~~v~~~~~~~~~g~~lasg-~~g~V~IwD~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~-~ 95 (2435)
++.+.-.+++.++++..+|++..+- ..+.|..++++..... +.....+ ......++.++.+..|.++. .
T Consensus 34 ~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~--------~~v~~~~-~~~P~GlAvD~~~~~ly~~d~~ 104 (619)
T 3s94_A 34 IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV--------QNVVVSG-LLSPDGLACDWLGEKLYWTDSE 104 (619)
T ss_dssp --CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----C--------EEEECSS-CSCEEEEEEETTTTEEEEEETT
T ss_pred EEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCce--------EEEEeCC-CCCcCeEEEEecCCEEEEEeCC
Confidence 3445556788899988888777665 6778888887643210 1111111 12345678887666666665 4
Q ss_pred CCeEEEEECCCCCeEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCCEEEEEccCCeeEEEEecCCCcEEEEEEeecCCC
Q psy4869 96 NGSLKTFSLDTTDVISTFTGHKSAITVIQYDPLGHRLATGSK--DTDIVLWDVVAECGLHRLSGHKGVITDIRFMSQPGH 173 (2435)
Q Consensus 96 ~G~i~i~d~~~~~~~~~l~gH~~~V~~l~f~p~g~~laSgs~--Dg~I~iWd~~~~~~~~~l~gH~~~V~~v~~~~~~~~ 173 (2435)
++.|.+.+++.......+.+.-..-..|+++|.+.+|.-... .+.|...++............-.....|++.+. ++
T Consensus 105 ~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~-~~ 183 (619)
T 3s94_A 105 TNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQ 183 (619)
T ss_dssp TTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETT-TT
T ss_pred CCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEcc-CC
Confidence 678999999876544444344556778999997666555443 355666665443332223334456788998753 45
Q ss_pred cEEEEEeCCCcEEEEeccCCccccccccccceEEEEEEEeCCCeEEEeeCCCcEEEEEcCCCCCccccchhhhhhhccee
Q psy4869 174 HFVVSSAKDTFVKIWDADTGDCFKTMAAHLTEVWGVCVMREDSYLISGSNDAELKVWNVRDRSDIDTEDKDKLSEQLNQL 253 (2435)
Q Consensus 174 ~~l~S~s~Dg~I~iWd~~tg~~~~~~~~h~~~V~~l~~~p~~~~l~s~s~Dg~v~vwdl~~~~~~~~~~~~~~~~~~~~~ 253 (2435)
.+.++-...+.|...|++.........+....-.++++..+ ..+++-...+.|...|..+++....+..
T Consensus 184 ~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~---------- 252 (619)
T 3s94_A 184 KLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS---------- 252 (619)
T ss_dssp EEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS----------
T ss_pred EEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec----------
Confidence 56667777888999998754432222212222345555433 3333444567788888765543211100
Q ss_pred ecccCCCCceeeeEEEEeecccccccCCccceEEEEEEeeeecccccccCccccccchhhhhhhhhcccCCCeEEEEeCc
Q psy4869 254 LLSEDEPDLTVSKIEVQIINELKNLSTGKKKWLQVFRLALCISSITLNIDDFAFGIDTTQELRTRSMKRKNDEVTVYDRE 333 (2435)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~i~d~~ 333 (2435)
....+. .+. ........ .+ .+.+.. ....-..+-+....
T Consensus 253 --~~~~p~----~i~--v~~~~~qp-~~--------------------~n~C~~------------~ng~Cs~lCl~~~~ 291 (619)
T 3s94_A 253 --DIFSPM----DIH--AFSQQRQP-NA--------------------TNPCGI------------DNGGCSHLCLMSPV 291 (619)
T ss_dssp --CCCCCS----EEE--ECCGGGSC-CC--------------------CCTTTT------------TGGGCSSEEEECSS
T ss_pred --CCCCCc----EEE--EEccccCC-Cc--------------------cccccC------------CCCcccceEECCCC
Confidence 000000 000 00000000 00 000000 00000001111000
Q ss_pred cceeeeeecccccCccccccceeEecccCCcEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee-CCCCCeeEEE
Q psy4869 334 KNYKVQKVQKDVGRTSNLFAPIMLLEGHGGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS-GHTGAVMDLK 412 (2435)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~p~~~l~gH~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~-~h~~~V~~l~ 412 (2435)
.......... -+.+. .+..+|.. . ...+|+.+ ..+.|+..++.........+. ..-..+..|+
T Consensus 292 ~~~~~C~C~~-----------g~~l~--~d~~~C~~-~-~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld 355 (619)
T 3s94_A 292 KPFYQCACPT-----------GVKLL--ENGKTCKD-G-ATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAID 355 (619)
T ss_dssp TTSEEEECCT-----------TCCBC--TTSSCBCS-S-CSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEE
T ss_pred CCCceEeCCc-----------hheec--ccCcccCC-C-CceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEE
Confidence 0000000000 00010 01111111 1 12244443 345677777754322111111 1234578899
Q ss_pred EccCCCEEEEEe-CCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcc
Q psy4869 413 FSTDGCHIFTCS-TDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTY 490 (2435)
Q Consensus 413 ~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~ 490 (2435)
|++.+..|+.+. ..+.|+.++++.......+.........+++.+.+.++.++-...+.|.+.++......... ..-.
T Consensus 356 ~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~ 435 (619)
T 3s94_A 356 YDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLE 435 (619)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCC
T ss_pred EEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCC
Confidence 998655655554 57889999987644444444333456677777667788888788899999998765433332 2345
Q ss_pred cEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcC
Q psy4869 491 QVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIR 561 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~ 561 (2435)
....++++|...+|+.... .+.|...++............-...++|++++++..|+.+. ..+.|..+++.
T Consensus 436 ~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d 509 (619)
T 3s94_A 436 EPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD 509 (619)
T ss_dssp SEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESS
T ss_pred CeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecC
Confidence 6899999998666666543 36787777764333222333345678999999877777665 45788888886
No 292
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.45 E-value=2.3e-05 Score=105.37 Aligned_cols=319 Identities=13% Similarity=0.079 Sum_probs=188.9
Q ss_pred CCcEEEEecCCcEEEEeCCCCceeEEEeCCCeE----------EEEEEecCCCEEEEEeCCCeEEEEEccCCceeecccc
Q psy4869 896 DNLALVSACASQVKIWNRPSLSCLRTIDTGSYA----------LSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 896 dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v----------~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
+++.++.+..+.|.-+|..+++.+..++..... ..+++ .+..|++++.++.|+.+|.++|+++.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 565555555456889999999999877643211 22233 356788899999999999999998866543
Q ss_pred ccc----cee-EEEEecCCCCCCCcCCcce-EEEEEe------CCCeEEEEEccccccccccccccccccc-ccceeeee
Q psy4869 966 HSQ----ELW-SVAMLPDQFNPNVYLPLQI-QVVTGG------GDKSVKLWQLELVSVNREADEETKDVSR-SHKVLSLL 1032 (2435)
Q Consensus 966 h~~----~V~-sv~~s~d~~~~~~~~p~~~-~l~sgs------~Dg~V~lW~l~~~~~~~~~~~~~~~~~~-~~~~l~~~ 1032 (2435)
... .+. +.....+.. .+. .++.+. .+|.|..+|...++...........+.. ........
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~-------~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~ 218 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGK-------TGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVT 218 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTT-------TCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEES
T ss_pred CCCCcCcccccCCEEeCCCc-------CCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccc
Confidence 221 111 111111100 011 455554 2789999998877655532211000000 00000000
Q ss_pred --------ecc---------cccc--CCCEEEEEEcCCCCEEEEEEC--------------------C----CcEEEEEc
Q psy4869 1033 --------HTR---------TLKL--EEQVLCARVSPDSKLLAVSLL--------------------D----TTVKIFFL 1069 (2435)
Q Consensus 1033 --------~~~---------~~~~--~~~v~~l~~spdg~~Lavg~~--------------------d----g~V~i~d~ 1069 (2435)
... .... ...-..++++|+..+++++.. | +.|..+|.
T Consensus 219 g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~ 298 (582)
T 1flg_A 219 GDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDP 298 (582)
T ss_dssp SCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECT
T ss_pred cccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeC
Confidence 000 0000 011134678888888888773 2 57999999
Q ss_pred CCCeEEEEEec--CC--------cCEEEEEEc-CCCC---EEEEEECCCcEEEEEccCCceeEEEeccC-----------
Q psy4869 1070 DTFKFFISLYG--HK--------LPVLSLDMS-YDST---LIATGSGDRTVKVWGLDYGDCHKSLLAHE----------- 1124 (2435)
Q Consensus 1070 ~~~~~~~~l~~--h~--------~~V~sl~~s-pdg~---~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~----------- 1124 (2435)
.+++.+-.++. |. .++. +... .+|+ .++.++.+|.++++|.++|+.+..+....
T Consensus 299 ~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~ 377 (582)
T 1flg_A 299 SSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLK 377 (582)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTT
T ss_pred CCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccccc
Confidence 99998888753 32 2333 2222 4664 78889999999999999999887665321
Q ss_pred --CC--------------------------------EEEEEEccCCCEEEEEe---------------------------
Q psy4869 1125 --DS--------------------------------VTGVTFVPKTHYFFTTS--------------------------- 1143 (2435)
Q Consensus 1125 --~~--------------------------------V~~v~fsp~~~~l~s~s--------------------------- 1143 (2435)
.+ ...++++|+...+++..
T Consensus 378 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 457 (582)
T 1flg_A 378 TGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRI 457 (582)
T ss_dssp TCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred CCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceee
Confidence 00 01345666555554432
Q ss_pred ------CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCE
Q psy4869 1144 ------KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSV 1217 (2435)
Q Consensus 1144 ------~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V 1217 (2435)
.++.|..||+.+++.+..... ..++..-.....+.+++.|+.|+.++.||.++|+.+..++.....+
T Consensus 458 ~p~~~~~~G~l~A~D~~tG~~~W~~~~-------~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~ 530 (582)
T 1flg_A 458 KRMYDDHVGSLRAMDPVSGKVVWEHKE-------HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV 530 (582)
T ss_dssp EESCSSCSEEEEEECTTTCCEEEEEEE-------SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCCCCCCcceEEEEECCCCCEEEEecC-------CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcc
Confidence 257899999999988776641 1122111112246788889999999999999999998886543321
Q ss_pred -EEEEEeeCCCEEEE
Q psy4869 1218 -TGVTFVPKTHYFFT 1231 (2435)
Q Consensus 1218 -~~i~~spd~~~lvs 1231 (2435)
.-+.|..++++.++
T Consensus 531 a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 531 SPPITWEQDGEQYLG 545 (582)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred cCceEEEECCEEEEE
Confidence 22555566664443
No 293
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.45 E-value=0.022 Score=76.90 Aligned_cols=229 Identities=10% Similarity=0.040 Sum_probs=134.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCce-EEEEeccCccccccCcccCC
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRG 459 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~~~ 459 (2435)
....|++.++.+...........-..+..|+|++.+..|+.+. ..+.|..++++.... ...+.........+++.+.+
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 3556777777543212222233345678999998766666554 467899999865432 22333333456678887777
Q ss_pred CeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEE
Q psy4869 460 QLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTG 536 (2435)
Q Consensus 460 ~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~ 536 (2435)
..++++-...+.|.+.++......... ..-.....++++|.+.+|+.... .+.|...++............-...++
T Consensus 96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 788888888899999999865543333 34455778999998777776653 467888887644333333333456799
Q ss_pred EEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE
Q psy4869 537 LSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI 615 (2435)
Q Consensus 537 i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~ 615 (2435)
|++++++..|+.+. ..+.|..+|+.. ........+.. .....+++..+ ..+.+-...+.|...|..+++.
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG----~~~~~~~~~~~----~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGSL----PHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSC----CEEC-------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCC----CccEEEEeCCC----CCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 99999877666554 567888888762 11111111110 11234555544 3444444566787788777765
Q ss_pred EEEe
Q psy4869 616 AYKL 619 (2435)
Q Consensus 616 ~~~l 619 (2435)
...+
T Consensus 247 ~~~i 250 (619)
T 3s94_A 247 LREI 250 (619)
T ss_dssp CEEC
T ss_pred cEEE
Confidence 5544
No 294
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.42 E-value=3.1e-06 Score=110.03 Aligned_cols=249 Identities=15% Similarity=0.101 Sum_probs=163.3
Q ss_pred CCCcEEEEecC--CcEEEEeCCCCceeE--EEeCCCeEEEEEE-e-cCCCEEEEEe------------------CCCeEE
Q psy4869 895 SDNLALVSACA--SQVKIWNRPSLSCLR--TIDTGSYALSVCF-V-PGDRHVLVGT------------------KDGRLL 950 (2435)
Q Consensus 895 ~dg~~la~g~~--~~V~Iwd~~~~~~~~--~l~~~~~v~~vaf-s-pdg~~Lavg~------------------~dg~V~ 950 (2435)
+||++|+.... +.|.+.|+++.++.. .++.+..+..+++ . |++++|++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48999999774 579999999999887 5555677888998 5 9999999884 356899
Q ss_pred EEEccCCceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeC-C--------------CeEEEEEcccccccccc
Q psy4869 951 IVDIGAGEILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGG-D--------------KSVKLWQLELVSVNREA 1015 (2435)
Q Consensus 951 vwd~~sg~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~-D--------------g~V~lW~l~~~~~~~~~ 1015 (2435)
+.|.++.+++.++.... .-..+++++++ ..+++.+. + ..|.+.++......-..
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdG----------k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEG----------KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSS----------SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCC----------CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 99999999888876433 33566777775 34444443 3 33666665322110000
Q ss_pred cccccccccccceeeeee------ccccccCCCEEEEEEcCCCCEEEEEEC-CCcEEEEEcCCCe------------EEE
Q psy4869 1016 DEETKDVSRSHKVLSLLH------TRTLKLEEQVLCARVSPDSKLLAVSLL-DTTVKIFFLDTFK------------FFI 1076 (2435)
Q Consensus 1016 ~~~~~~~~~~~~~l~~~~------~~~~~~~~~v~~l~~spdg~~Lavg~~-dg~V~i~d~~~~~------------~~~ 1076 (2435)
+. ...+ ....++.... ...+.......++.++|||+++++++. +..|.++|+.+.+ ...
T Consensus 248 Gk-~~~i-~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 248 GD-YQEL-NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TC-SEEE-TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CC-eeEE-CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 00 0001 1111222221 112334557789999999999988864 5899999998653 334
Q ss_pred EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC----------CceeEEEeccCCCE-----EEEEEccCCCEEEE
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY----------GDCHKSLLAHEDSV-----TGVTFVPKTHYFFT 1141 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t----------~~~~~~l~~h~~~V-----~~v~fsp~~~~l~s 1141 (2435)
.+. -......++|+++|...++.-.|+.|.+||++. .+.+..+..|..+- .++.+.|||++|++
T Consensus 326 ~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~ 404 (595)
T 1fwx_A 326 EPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVC 404 (595)
T ss_dssp CCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEE
T ss_pred EcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEE
Confidence 443 234578899999995445666799999999987 55677776665432 12244689999998
Q ss_pred EeCC--CcE-----------EEEeCCCcc
Q psy4869 1142 TSKD--GRV-----------KQWDADNFE 1157 (2435)
Q Consensus 1142 ~s~D--g~V-----------~iwD~~~~~ 1157 (2435)
...- ..+ .++|+...+
T Consensus 405 ~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 405 LSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp EESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 8642 233 788885444
No 295
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.40 E-value=0.00011 Score=98.55 Aligned_cols=331 Identities=14% Similarity=0.035 Sum_probs=188.1
Q ss_pred CCEEEEEEC-CCcEEEEEc-CCCeEEEEEecCCc----------C-EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE
Q psy4869 1052 SKLLAVSLL-DTTVKIFFL-DTFKFFISLYGHKL----------P-VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK 1118 (2435)
Q Consensus 1052 g~~Lavg~~-dg~V~i~d~-~~~~~~~~l~~h~~----------~-V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~ 1118 (2435)
+..|++++. ++.|..+|. .+++.+-.+..... . -..+++ ++..++.++.|+.|..+|.++|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 556777777 789999999 89988777642211 0 011222 35678888899999999999999988
Q ss_pred EEeccC----CCEEE-EEEccCCCEEEEEeC------CCcEEEEeCCCcceeEEEEEEEee-cc----------------
Q psy4869 1119 SLLAHE----DSVTG-VTFVPKTHYFFTTSK------DGRVKQWDADNFERIVTLHFFISL-YG---------------- 1170 (2435)
Q Consensus 1119 ~l~~h~----~~V~~-v~fsp~~~~l~s~s~------Dg~V~iwD~~~~~~~~~~~~~~~~-~~---------------- 1170 (2435)
...... ..+.. ... .+..+++++. ++.|+.+|..+++.+..+...... ..
T Consensus 140 ~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 765321 01111 111 1345666654 789999999999988876521110 00
Q ss_pred -------------c-ccCe-EEEEEeCCCCEEEEEeCC----------------CcEEEEEccCCceeeEeec--cC---
Q psy4869 1171 -------------H-KLPV-LSLDMSYDSTLIATGSGD----------------RTVKVWGLDYGDCHKSLLA--HE--- 1214 (2435)
Q Consensus 1171 -------------h-~~~V-~~l~~s~dg~~l~sgs~D----------------g~V~iwd~~t~~~~~~~~~--h~--- 1214 (2435)
+ ...+ ..+++.++...++.+..+ +.|..+|.++|+.+..++. |.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 0 0000 135666766777776632 3599999999998877653 21
Q ss_pred -----CCEEEEEEeeCCC---EEEEEECCCcEEEEECCCCceEEEEeeCCcc----------------------------
Q psy4869 1215 -----DSVTGVTFVPKTH---YFFTTSKDGRVKQWDADNFERIVTLHFNPNV---------------------------- 1258 (2435)
Q Consensus 1215 -----~~V~~i~~spd~~---~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~---------------------------- 1258 (2435)
.++. +....+++ .++.++.+|.+.++|..+++.+....+....
T Consensus 298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~ 376 (571)
T 2ad6_A 298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGT 376 (571)
T ss_dssp CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEE
T ss_pred cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCce
Confidence 1221 22224663 5777889999999999999988877654311
Q ss_pred ----------------cccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEe
Q psy4869 1259 ----------------YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1322 (2435)
Q Consensus 1259 ----------------~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~ 1322 (2435)
+.|....+++...+....++..+. ... ... ..-+....+..
T Consensus 377 ~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~---------~~~-------------~g~-~~~g~~~~~~~ 433 (571)
T 2ad6_A 377 NICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFML---------PYR-------------AGQ-FFVGATLAMYP 433 (571)
T ss_dssp EESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCC---------CCC-------------TTS-CCCCEEEEEEE
T ss_pred EECCCCccccCCCCceECCCCCEEEEEchhcccccccccc---------ccc-------------cCC-ccccccceecc
Confidence 000111111111111111111000 000 000 00000001111
Q ss_pred cCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEeccccc-ce
Q psy4869 1323 SPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHED-SV 1401 (2435)
Q Consensus 1323 spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~~-~V 1401 (2435)
+|.+. + ...+|.|..||..+++.+..+.... ++....+...+..|+.|+.|+.|+.+|.++|+++.+++.... .-
T Consensus 434 ~~~~~-~--~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 509 (571)
T 2ad6_A 434 GPNGP-T--KKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG 509 (571)
T ss_dssp CTTST-T--SCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred Ccccc-C--CCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEe
Confidence 22211 0 0246889999999998877776332 222223344567788899999999999999999887663321 11
Q ss_pred EEEEEeeCCCEEE
Q psy4869 1402 TGVTFVPKTHYFF 1414 (2435)
Q Consensus 1402 ~~laf~P~~~~la 1414 (2435)
.-+.+..++..++
T Consensus 510 ~p~~~~~~G~~yv 522 (571)
T 2ad6_A 510 SPMTYSFKGKQYI 522 (571)
T ss_dssp CCEEEEETTEEEE
T ss_pred eeEEEEECCEEEE
Confidence 2233556775444
No 296
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.35 E-value=3.9e-05 Score=102.80 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=173.1
Q ss_pred CCEEEEEEC-CCcEEEEEc-cCCceeEEEeccCC-----------CEEEEEEccCCCE----EEEEeCCCcEEEEeCCCc
Q psy4869 1094 STLIATGSG-DRTVKVWGL-DYGDCHKSLLAHED-----------SVTGVTFVPKTHY----FFTTSKDGRVKQWDADNF 1156 (2435)
Q Consensus 1094 g~~L~Sgs~-Dg~I~vWd~-~t~~~~~~l~~h~~-----------~V~~v~fsp~~~~----l~s~s~Dg~V~iwD~~~~ 1156 (2435)
+..|+.++. ++.|.-+|. .+|+.+..+..... ....+++.|.+.. |++++.|+.|..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456666777 889999999 89998888754221 0123455333333 888889999999999999
Q ss_pred ceeEEEEEEEeecccccCeEE-EEEeCCCCEEEEEe------CCCcEEEEEccCCceeeEeeccCCC-------------
Q psy4869 1157 ERIVTLHFFISLYGHKLPVLS-LDMSYDSTLIATGS------GDRTVKVWGLDYGDCHKSLLAHEDS------------- 1216 (2435)
Q Consensus 1157 ~~~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs------~Dg~V~iwd~~t~~~~~~~~~h~~~------------- 1216 (2435)
+.+....... ......+.+ -.+. ++ .+++++ .++.|+.+|.++|+.+..+......
T Consensus 142 ~~~W~~~~~~--~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~ 217 (599)
T 1w6s_A 142 ETVWKVENSD--IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKN 217 (599)
T ss_dssp CEEEEEECCC--GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred CEEEeecCCC--CCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccc
Confidence 9887754110 000001111 1111 33 566655 3799999999999988766432110
Q ss_pred ------------------------E-EEEEEeeCCCEEEEEECCC----------------cEEEEECCCCceEEEEeeC
Q psy4869 1217 ------------------------V-TGVTFVPKTHYFFTTSKDG----------------RVKQWDADNFERIVTLHFN 1255 (2435)
Q Consensus 1217 ------------------------V-~~i~~spd~~~lvsgs~Dg----------------~I~vwD~~~~~~v~~~~~~ 1255 (2435)
+ ..+.+.++...++.+..++ .|..+|.++++.+..++..
T Consensus 218 ~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~ 297 (599)
T 1w6s_A 218 PHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKT 297 (599)
T ss_dssp GGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESS
T ss_pred ccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecC
Confidence 0 1345556666777766553 4444444444433332221
Q ss_pred CcccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEec-CCc---ceeEE
Q psy4869 1256 PNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVS-PDS---KLLAV 1331 (2435)
Q Consensus 1256 ~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~s-pdg---~~lav 1331 (2435)
... .||.. . ....+. +... .+| +.++.
T Consensus 298 ~~d------------------~wd~d----------------~--------------~~~p~l-~d~~~~~G~~~~~v~~ 328 (599)
T 1w6s_A 298 PHD------------------EWDYA----------------G--------------VNVMML-SEQKDKDGKARKLLTH 328 (599)
T ss_dssp TTC------------------SSCCC----------------C--------------CCCCEE-EEEECTTSCEEEEEEE
T ss_pred CCc------------------ccccc----------------C--------------CCccEE-EeccccCCcEEEEEEE
Confidence 110 01100 0 000111 1111 456 46777
Q ss_pred eecCCeEEEEEcccceEEEEecCCC------------C-Ce--------------------------EEEEEecCCCEEE
Q psy4869 1332 SLLDTTVKIFFLDTFKFFISLYGHK------------L-PV--------------------------LSLDMSYDSTLIA 1372 (2435)
Q Consensus 1332 gs~dG~V~v~d~~~~k~i~~~~~h~------------~-~V--------------------------~~la~spdg~~L~ 1372 (2435)
++.+|.++++|..+++++....... + ++ ..++++|+..+++
T Consensus 329 ~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~y 408 (599)
T 1w6s_A 329 PDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF 408 (599)
T ss_dssp ECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred ECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEE
Confidence 8889999999999988876655211 0 11 1356777766665
Q ss_pred EE---------------------------------e------CCCcEEEEeCCCCceEEEecccccceEEEEEeeCCCEE
Q psy4869 1373 TG---------------------------------S------GDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYF 1413 (2435)
Q Consensus 1373 sG---------------------------------g------~Dg~V~iwdl~~gk~~~~~~~h~~~V~~laf~P~~~~l 1413 (2435)
+. + .+|.|.-||+.+|+.+-+.+. ..++..-...-.+.++
T Consensus 409 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~v 487 (599)
T 1w6s_A 409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLV 487 (599)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEE
T ss_pred EeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEE
Confidence 43 1 347899999999998765532 1222221223356677
Q ss_pred EEEeCCCcEEEEECCCceeEEEEeec
Q psy4869 1414 FTTSKDGRVKQWDADNFERIVTLHIC 1439 (2435)
Q Consensus 1414 aSgg~Dg~V~lWd~~~~~~l~~~~~~ 1439 (2435)
+.++.||.|+.||..+.+.+.++...
T Consensus 488 f~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 488 FYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCeEEEEECCCCCEEEEeeCC
Confidence 77999999999999999999988743
No 297
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.34 E-value=0.036 Score=74.88 Aligned_cols=479 Identities=9% Similarity=0.004 Sum_probs=261.7
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeCC--CeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeecccccccceeEEEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDTG--SYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPAHSQELWSVAM 975 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~~--~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~ 975 (2435)
+|+.+....|+..++.+......++.. ..+.+|+|.+.+..|... ..++.|..+++..+.....+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 555566778889998876655544432 367799999977777754 46889999998755433223222233456666
Q ss_pred ecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEE
Q psy4869 976 LPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLL 1055 (2435)
Q Consensus 976 s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~L 1055 (2435)
...+ +..+++-...+.|.+.+++.... .++. ...-.....++++|...+|
T Consensus 88 D~~~---------~~LY~tD~~~~~I~v~~~dG~~~---------------~~l~------~~~l~~P~~iavdp~~G~l 137 (628)
T 4a0p_A 88 DWLG---------KNLYWADTGTNRIEVSKLDGQHR---------------QVLV------WKDLDSPRALALDPAEGFM 137 (628)
T ss_dssp ETTT---------TEEEEEETTTTEEEEEETTSTTC---------------EEEE------CSSCCCEEEEEEETTTTEE
T ss_pred EeCC---------CEEEEEECCCCEEEEEecCCCcE---------------EEEE------eCCCCCcccEEEccCCCeE
Confidence 5432 23555555567788877653210 0000 0112457899999987788
Q ss_pred EEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEeccCCCEEEEEE
Q psy4869 1056 AVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLLAHEDSVTGVTF 1132 (2435)
Q Consensus 1056 avg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~f 1132 (2435)
+.... .+.|...+++.......+. .-.....|++++++..|+.+.. .+.|...+++.... ..+.........+++
T Consensus 138 Y~tD~g~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav 215 (628)
T 4a0p_A 138 YWTEWGGKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQ 215 (628)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEE
T ss_pred EEeCCCCCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEE
Confidence 87764 4677777776544333333 3456789999998777776654 67888999865433 344433445567777
Q ss_pred ccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEE-------EEeeccc-----------ccCeEEEEEe-C---------C
Q psy4869 1133 VPKTHYFFTTS-KDGRVKQWDADNFERIVTLHF-------FISLYGH-----------KLPVLSLDMS-Y---------D 1183 (2435)
Q Consensus 1133 sp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~-------~~~~~~h-----------~~~V~~l~~s-~---------d 1183 (2435)
.. + .|+.+. ..+.|...|..+++....+.. +...... .+....+|+. + .
T Consensus 216 ~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~ 293 (628)
T 4a0p_A 216 YQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPA 293 (628)
T ss_dssp ET-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECST
T ss_pred EC-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCC
Confidence 64 3 455444 478888888766554433321 0000000 0111112221 1 1
Q ss_pred C--------------CEEEEEeCCCcEEEEEccCCcee-eEee-ccCCCEEEEEEeeCCCEEEEEE-CCCcEEEEECCCC
Q psy4869 1184 S--------------TLIATGSGDRTVKVWGLDYGDCH-KSLL-AHEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNF 1246 (2435)
Q Consensus 1184 g--------------~~l~sgs~Dg~V~iwd~~t~~~~-~~~~-~h~~~V~~i~~spd~~~lvsgs-~Dg~I~vwD~~~~ 1246 (2435)
| .+|+.+ ....|+-..+...... ..+. ..-..+..|.|.+.++.|+.+. ..+.|..+++...
T Consensus 294 g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~ 372 (628)
T 4a0p_A 294 HYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGS 372 (628)
T ss_dssp TCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEecccCCcCccccceeeee-ccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCC
Confidence 1 112221 1233444444322110 1111 1224578899998666666555 5677888887643
Q ss_pred ceEEEEee-----------CCcccccC-ceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeeccccccc
Q psy4869 1247 ERIVTLHF-----------NPNVYLPL-QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1314 (2435)
Q Consensus 1247 ~~v~~~~~-----------~~~~~~~~-~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1314 (2435)
.....+.. ....+... ....++....+.|.+.++.-.. ...+.. .--
T Consensus 373 ~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~------------------~~~l~~---~~l 431 (628)
T 4a0p_A 373 QGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS------------------VGVVLK---GEQ 431 (628)
T ss_dssp SCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCE------------------EEEEEE---CTT
T ss_pred CceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCe------------------EEEEEe---CCC
Confidence 32222211 01111111 2233444455666666553100 000000 012
Q ss_pred ccEEEEEecC-CcceeEEeecCC--eEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEeCCCCce
Q psy4869 1315 EQVLCARVSP-DSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1315 ~~i~~ia~sp-dg~~lavgs~dG--~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~-Dg~V~iwdl~~gk~ 1390 (2435)
...+.|++.| .|..+.+-.... +|...+++-..........-.....|+++++++.|+.+.. .+.|..++++....
T Consensus 432 ~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 432 DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANR 511 (628)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCce
Confidence 4578899999 566666544333 5666666543332223333456789999998887777765 57899999865432
Q ss_pred EEEecccccceEEEEEeeCCCEEEEEeCCCcEEEEECCCceeEE
Q psy4869 1391 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1391 ~~~~~~h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~~~~l~ 1434 (2435)
............+|+... +.++.+=.....|...|..+.+...
T Consensus 512 ~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~ 554 (628)
T 4a0p_A 512 IVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRT 554 (628)
T ss_dssp EEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCE
T ss_pred EEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcE
Confidence 222222233456777754 4555555555677777766544333
No 298
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.33 E-value=0.063 Score=77.22 Aligned_cols=485 Identities=14% Similarity=0.138 Sum_probs=259.0
Q ss_pred CCceEEEEecCCCcEEEEec-CCcEEEEeCCCC--------ceeEEEeCCCeEEEEEEecCC----CEEE-E-E-eCCCe
Q psy4869 885 HSEVRALAFSSDNLALVSAC-ASQVKIWNRPSL--------SCLRTIDTGSYALSVCFVPGD----RHVL-V-G-TKDGR 948 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~-~~~V~Iwd~~~~--------~~~~~l~~~~~v~~vafspdg----~~La-v-g-~~dg~ 948 (2435)
....+||++-.+| +|+.|. .|.=.+|.+... +.+..+..-.++..++..... ..|+ + | +.+|.
T Consensus 326 ~~~~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 326 TSIAECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp CSCCSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred ccCccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 4456788888777 555555 466666665533 334566666677766665421 2444 3 2 25788
Q ss_pred EEEEEccCC-cee--ecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccc
Q psy4869 949 LLIVDIGAG-EIL--EDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1025 (2435)
Q Consensus 949 V~vwd~~sg-~~v--~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~ 1025 (2435)
|++..-.=+ +.. ..++ ....+|.+....+. ....+|+..-.+.+ +++.+..... .++.
T Consensus 405 L~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~-------~~~~yLvlS~~~~T-~Vl~i~~e~v--------eev~-- 465 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNR-------ETDDTLVLSFVGQT-RVLMLNGEEV--------EETE-- 465 (1158)
T ss_dssp EEEEEESBCEEEEEEECCC-SCCEEEEECCCSSC-------SSCCEEEEEETTEE-EEEEEETTEE--------EEEC--
T ss_pred EEEEecCCCEEEEEeecCC-CccEEEEEeecCCC-------CCCCEEEEECCCCe-EEEEEeCCcc--------cccc--
Confidence 887542111 111 1233 23577777654221 11235555555444 5555531110 0110
Q ss_pred cceeeeeecccccc-CCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecC-CcCEEEEEEcCCCCEEEEEECC
Q psy4869 1026 HKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGH-KLPVLSLDMSYDSTLIATGSGD 1103 (2435)
Q Consensus 1026 ~~~l~~~~~~~~~~-~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h-~~~V~sl~~spdg~~L~Sgs~D 1103 (2435)
..-+.. ...+.+-.+ .++ .++=.. ...|++++.+....+..+... ...|...+.+. .+++.+. +
T Consensus 466 --------~~gf~~~~~TL~~~~l-~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g 531 (1158)
T 3ei3_A 466 --------LMGFVDDQQTFFCGNV-AHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-G 531 (1158)
T ss_dssp --------CTTCCSSSCEEEEEEE-TTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-T
T ss_pred --------cccccCCCCcEEEEEc-CCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-C
Confidence 000111 112222222 233 333222 455888887666666666533 33566666543 4566665 6
Q ss_pred CcEEEEEccCCceeEEE-eccCCCEEEEEEccC------CCEEEEEeC-CCcEEEEeCCCcceeEEEEEEEeecccccCe
Q psy4869 1104 RTVKVWGLDYGDCHKSL-LAHEDSVTGVTFVPK------THYFFTTSK-DGRVKQWDADNFERIVTLHFFISLYGHKLPV 1175 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l-~~h~~~V~~v~fsp~------~~~l~s~s~-Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V 1175 (2435)
+.|.+++++.++..... ..-...|.++++.+. +.++++|.+ |+.|+++++.+.+.+.... + ......
T Consensus 532 ~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~----L-~~~~~p 606 (1158)
T 3ei3_A 532 RALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEM----L-GGEIIP 606 (1158)
T ss_dssp TEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEE----C-CSSCCE
T ss_pred CEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEE----C-CCCCCC
Confidence 78888888766432211 124568999999863 468999998 9999999998765543322 1 111233
Q ss_pred EEEEEe--CCCCEEEEEeCCCcEEEEEc--cCCceeeE--eeccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceE
Q psy4869 1176 LSLDMS--YDSTLIATGSGDRTVKVWGL--DYGDCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI 1249 (2435)
Q Consensus 1176 ~~l~~s--~dg~~l~sgs~Dg~V~iwd~--~t~~~~~~--~~~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v 1249 (2435)
.++.+. ....+|..|-.||.+.-+.+ .+|+.... ..-...++.=..+...+..-+-+..++-..++--+. +..
T Consensus 607 ~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~-~l~ 685 (1158)
T 3ei3_A 607 RSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH-KLV 685 (1158)
T ss_dssp EEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS-SEE
T ss_pred cEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC-ceE
Confidence 344333 23457888989998765554 44553322 112234444333433333333333344444443221 111
Q ss_pred EEEeeCCc------ccccC--ceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEE
Q psy4869 1250 VTLHFNPN------VYLPL--QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCAR 1321 (2435)
Q Consensus 1250 ~~~~~~~~------~~~~~--~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia 1321 (2435)
.. ..... .|... ..-++ ...++.++|..+... ..+..+..+++...+.++
T Consensus 686 ~s-~l~~~~v~~~~~F~se~~~~g~v-~~~~~~LrI~~i~~~--------------------~~~~~~~ipL~~Tprri~ 743 (1158)
T 3ei3_A 686 FS-NVNLKEVNYMCPLNSDGYPDSLA-LANNSTLTIGTIDEI--------------------QKLHIRTVPLYESPRKIC 743 (1158)
T ss_dssp EE-EBSSSCCCEEEEECCSSSTTEEE-EECSSCEEEEEECCS--------------------SSEEEEEEECSSEEEEEE
T ss_pred Ee-ccChHHhceEeccCcccCCCcEE-EEcCCceEEEEeccc--------------------CCeeEEEEeCCCCceEEE
Confidence 11 11100 11110 11233 334556888876421 123455667788888888
Q ss_pred ecCCcceeEEeecC-------------------------------------------------CeEEEEEcccceEEEEe
Q psy4869 1322 VSPDSKLLAVSLLD-------------------------------------------------TTVKIFFLDTFKFFISL 1352 (2435)
Q Consensus 1322 ~spdg~~lavgs~d-------------------------------------------------G~V~v~d~~~~k~i~~~ 1352 (2435)
++|+.+.++++..+ +.++++|..+++.+..+
T Consensus 744 y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~ 823 (1158)
T 3ei3_A 744 YQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAH 823 (1158)
T ss_dssp EEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEE
T ss_pred EcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEE
Confidence 88888777765421 23677777777776666
Q ss_pred cCCC-CCeEEEE---EecC-CCEEEEEe----------CCCcEEEEeCCCCceEEEec-ccccceEEEEEeeCCCEEEEE
Q psy4869 1353 YGHK-LPVLSLD---MSYD-STLIATGS----------GDRTVKVWGLDYGDCHKSLL-AHEDSVTGVTFVPKTHYFFTT 1416 (2435)
Q Consensus 1353 ~~h~-~~V~~la---~spd-g~~L~sGg----------~Dg~V~iwdl~~gk~~~~~~-~h~~~V~~laf~P~~~~laSg 1416 (2435)
.-.. ..+.+++ |..+ ..+|+.|. ..|.|++|++..+++....+ ...++|++|+-- +|++++..
T Consensus 824 ~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i 902 (1158)
T 3ei3_A 824 QFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI 902 (1158)
T ss_dssp ECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE
T ss_pred eCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc
Confidence 5322 2344544 3322 46888886 34889999998665433222 346789998843 45555544
Q ss_pred eCCCcEEEEECCCceeEE
Q psy4869 1417 SKDGRVKQWDADNFERIV 1434 (2435)
Q Consensus 1417 g~Dg~V~lWd~~~~~~l~ 1434 (2435)
| ..|++||+...+.++
T Consensus 903 g--~~l~vy~l~~~~~L~ 918 (1158)
T 3ei3_A 903 N--STVRLYEWTTEKELR 918 (1158)
T ss_dssp T--TEEEEEEECTTSCEE
T ss_pred C--CEEEEEECCCCceEE
Confidence 3 689999999766554
No 299
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.32 E-value=0.00039 Score=83.71 Aligned_cols=250 Identities=12% Similarity=0.000 Sum_probs=152.5
Q ss_pred cEEEEecCCcEEEEeCCCCcee-----EEEe-CCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeecccccccce
Q psy4869 898 LALVSACASQVKIWNRPSLSCL-----RTID-TGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGAGEILEDIPAHSQEL 970 (2435)
Q Consensus 898 ~~la~g~~~~V~Iwd~~~~~~~-----~~l~-~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~sg~~v~~~~~h~~~V 970 (2435)
.+|..+..+.|..+++...... ..+. ....+.+++++++++.|.+.. .++.|.++|+..+.....+.......
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 4555555567888887754321 1122 224567899999877776654 57899999987655433333222456
Q ss_pred eEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcC
Q psy4869 971 WSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP 1050 (2435)
Q Consensus 971 ~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp 1050 (2435)
..+++.+++ +..+++-...+.|.+++++.... ..+ .. ........++++|
T Consensus 82 ~~ia~d~~~---------~~lyv~d~~~~~I~~~~~~g~~~---------------~~~--~~----~~~~~P~~i~vd~ 131 (267)
T 1npe_A 82 EGIALDHLG---------RTIFWTDSQLDRIEVAKMDGTQR---------------RVL--FD----TGLVNPRGIVTDP 131 (267)
T ss_dssp EEEEEETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE--EC----SSCSSEEEEEEET
T ss_pred cEEEEEecC---------CeEEEEECCCCEEEEEEcCCCCE---------------EEE--EE----CCCCCccEEEEee
Confidence 788888753 23555555678888888752110 000 00 0114578999999
Q ss_pred CCCEEEEEECC---CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCC
Q psy4869 1051 DSKLLAVSLLD---TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDS 1126 (2435)
Q Consensus 1051 dg~~Lavg~~d---g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~ 1126 (2435)
++..|+++... +.|..++.+.................+++++++..|+.+. ..+.|.+++.........+.. ...
T Consensus 132 ~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~ 210 (267)
T 1npe_A 132 VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQY 210 (267)
T ss_dssp TTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCS
T ss_pred CCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCC
Confidence 87777777643 6788888764332222222334578999999877666555 467899999875543333332 233
Q ss_pred EEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCC
Q psy4869 1127 VTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDST 1185 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 1185 (2435)
...++.. +..|+.+. .++.|..+|..+++....+. .+.......+++.|++.
T Consensus 211 P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~-----~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 211 PFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH-----PHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC-----CSSCCCCCCEEEECSCC
T ss_pred ceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc-----cccccccceeeecCccC
Confidence 4566654 45555555 56899999998887666553 11122456677777653
No 300
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.30 E-value=0.00019 Score=96.52 Aligned_cols=343 Identities=15% Similarity=0.047 Sum_probs=190.1
Q ss_pred CCEEEEEECCCcEEEEEcCCCeEEEEEecCCcC---------EEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEec
Q psy4869 1052 SKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLP---------VLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1052 g~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~---------V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
+..|++++.++.|..+|..+++.+-.+...... -..+++ .+..++.++.|+.|..+|.++|+.+.....
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 455666666455899999999988777543211 011222 356788889999999999999999887754
Q ss_pred cCC----CEE-EEEEcc---CCC-EEEEEe------CCCcEEEEeCCCcceeEEEEEEE----eec----------c---
Q psy4869 1123 HED----SVT-GVTFVP---KTH-YFFTTS------KDGRVKQWDADNFERIVTLHFFI----SLY----------G--- 1170 (2435)
Q Consensus 1123 h~~----~V~-~v~fsp---~~~-~l~s~s------~Dg~V~iwD~~~~~~~~~~~~~~----~~~----------~--- 1170 (2435)
... .+. .-.... +++ .+++++ .++.|+.+|..+++.+...+... ... +
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence 321 111 111111 123 566654 37899999999999887653210 000 0
Q ss_pred ------------------cccCeEEEEEeCCCCEEEEEeC--------------------C----CcEEEEEccCCceee
Q psy4869 1171 ------------------HKLPVLSLDMSYDSTLIATGSG--------------------D----RTVKVWGLDYGDCHK 1208 (2435)
Q Consensus 1171 ------------------h~~~V~~l~~s~dg~~l~sgs~--------------------D----g~V~iwd~~t~~~~~ 1208 (2435)
....-..+++.++..+++.+.. | +.|..+|.++|+.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 0000123566777778887763 2 589999999999887
Q ss_pred Eeec--cCC----CEEE-EEEe---eCC---CEEEEEECCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEEC--CC
Q psy4869 1209 SLLA--HED----SVTG-VTFV---PKT---HYFFTTSKDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGG--DK 1273 (2435)
Q Consensus 1209 ~~~~--h~~----~V~~-i~~s---pd~---~~lvsgs~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~--d~ 1273 (2435)
.++. |.. .+.. +.+. .++ ..++.++.+|.+.++|.++++.+.........-. +.+-. .+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~------~~~~~~~~g 379 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW------ASHIDLKTG 379 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS------EEEECTTTC
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccc------cccccccCC
Confidence 7653 321 1111 1122 356 3688889999999999999999887766432100 00000 00
Q ss_pred eEEEEEcccccc-cccccccccccccccceeeeeecccccc-cccEEEEEecCCcceeEEe-------------------
Q psy4869 1274 SVKLWQLELVSV-NREADEETKDVSRSHKVLSLLHTRTLKL-EEQVLCARVSPDSKLLAVS------------------- 1332 (2435)
Q Consensus 1274 ~v~iwdl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~ia~spdg~~lavg------------------- 1332 (2435)
... .+...... ..+... ........| ... ......++++|+...+.+.
T Consensus 380 ~p~-~~~~~~~~~~~~~~~-----~~~~~~~~P-----~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~ 448 (582)
T 1flg_A 380 RPV-EREGQRPPLPEPGQK-----HGKAVEVSP-----PFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGS 448 (582)
T ss_dssp CEE-ECTTCSCCCCCTTCS-----SCCCEEESS-----CTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTS
T ss_pred CEe-EccccCCcccccccc-----CCCceEECc-----CCccccCCCCceECCCCCEEEEechhcceeeecccccccCCC
Confidence 000 00000000 000000 000000000 000 0001122333333332221
Q ss_pred --------------ecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecccc
Q psy4869 1333 --------------LLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE 1398 (2435)
Q Consensus 1333 --------------s~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~h~ 1398 (2435)
..+|.|..||+.+++.+.....+. ++..-.....+.+|+.|+.|+.++.||.++|+++-+++...
T Consensus 449 ~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 449 AYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGS 527 (582)
T ss_dssp CCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCC
Confidence 136889999999999877666332 22111222357788889999999999999999998776443
Q ss_pred cc-eEEEEEeeCCCEEE
Q psy4869 1399 DS-VTGVTFVPKTHYFF 1414 (2435)
Q Consensus 1399 ~~-V~~laf~P~~~~la 1414 (2435)
.. ..-+.|..++..++
T Consensus 528 g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 528 GIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCCSCCEEEEETTEEEE
T ss_pred CcccCceEEEECCEEEE
Confidence 21 12356667775443
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.28 E-value=0.049 Score=73.55 Aligned_cols=229 Identities=9% Similarity=0.022 Sum_probs=145.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEeccCccccccCcccCCC
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
....|+..++.+...........-..+..|+|++++..|+.+ ..++.|+.++++.......+.........+++.+.+.
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 556788888865422211111223568899999876666654 4578899999875544444433334456677777777
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
.++++-...+.|.+.++......... ..-.....++++|...+|+.... .+.|...++........+ ..-....+|
T Consensus 93 ~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~Gl 171 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGL 171 (628)
T ss_dssp EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEE
T ss_pred EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceE
Confidence 88888888899999998765433333 34456789999997777777653 578888888655433323 344567899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE
Q psy4869 538 SLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616 (2435)
Q Consensus 538 ~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~ 616 (2435)
++++++..|+.+. ..+.|..+|+... .+ ..+.... .....+++.. ++.+++-...+.|...|..+++..
T Consensus 172 alD~~~~~LY~aD~~~~~I~~~d~dG~---~~--~v~~~~l----~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 172 TIDYAKRRLYWTDLDTNLIESSNMLGL---NR--EVIADDL----PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC---SC--EEEEECC----SCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEccccCEEEEEECCCCEEEEEcCCCC---ce--EEeeccC----CCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 9999877776655 5778999998632 12 1222111 1335566653 444445455778888887777655
Q ss_pred EEecC
Q psy4869 617 YKLPG 621 (2435)
Q Consensus 617 ~~l~~ 621 (2435)
..+..
T Consensus 242 ~~l~~ 246 (628)
T 4a0p_A 242 TIIQG 246 (628)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 54433
No 302
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.27 E-value=2.6e-05 Score=92.76 Aligned_cols=198 Identities=9% Similarity=-0.006 Sum_probs=139.7
Q ss_pred CeeEEEEccCCCEEEEEeC--CCeEEEEECCCCceEEEEeccCc-cccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 407 AVMDLKFSTDGCHIFTCST--DQTLAVWDLEKGQRIKKMKGHST-FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~--Dg~I~vwd~~tg~~v~~l~~h~~-~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
....++|++|+..+++.+. ++.|+++|+.+++.+..+.-... ....+.+ .+..+.++...++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE--eCCEEEEEEecCCEEEEEECCCCcEE
Confidence 3689999998644444443 57999999999999988763221 1112332 35577788888999999999999888
Q ss_pred EeecCc-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCC-----CCEEEEEEcCCCCEEEEEECCCcEEE
Q psy4869 484 VSMNNT-YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS-----DTVTGLSLSPDGSYILSNAMDNTVRI 557 (2435)
Q Consensus 484 ~~~~~~-~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~-----~~V~~i~~spdg~~las~s~Dg~I~l 557 (2435)
..+... .. ...+++||+.++++..++.|.++|..+.+.+..+.-.. ..++.+.|. +|...+....++.|.+
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 887543 22 23456688888888888999999999999888875321 246788888 7755555546889999
Q ss_pred EEcCCCCCCCceEEEEeCcc---------cccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCCC
Q psy4869 558 WDIRPYVPGERCVKVMSGHQ---------HNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~---------~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s~ 613 (2435)
.|..+ .+.+..+.-.. .........++|+|+++ +++++...+.|.+.++...
T Consensus 177 ID~~t----g~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKD----GTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EETTT----CCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EECCC----CcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99984 56666665321 01113568899999985 5566667888888887543
No 303
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.26 E-value=0.037 Score=77.21 Aligned_cols=482 Identities=10% Similarity=0.053 Sum_probs=258.7
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEE--eCCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeec
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTI--DTGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILED 962 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l--~~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~ 962 (2435)
+..|.||.-.++|..- .|..+.+..||-...+..... .....+.++....+ ..|.+|+.+| |..||..+++....
T Consensus 21 ~n~V~~I~qD~~G~lW-igT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~-g~lWigT~~G-l~~yd~~~~~f~~~ 97 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW-IGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVIIDN-TYLYMGTDNG-ILVYNYRADRYEQP 97 (758)
T ss_dssp CCCEEEEEECTTSCEE-EEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEETT-TEEEEEETTE-EEEEETTTTEECCC
T ss_pred cceEEEEEECCCCCEE-EEECCCccccCCCceEEEEccCCCCCceEEEEEEcCC-CcEEEEeCCC-eEEEeCCCCEEECc
Confidence 4579999988888544 445556777774332111000 12345777776655 4677888665 78999888765432
Q ss_pred ccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCC
Q psy4869 963 IPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQ 1042 (2435)
Q Consensus 963 ~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1042 (2435)
.......|.++.. .++ .|..+..+ -|..++.....+.. ............
T Consensus 98 ~~~~~~~i~~i~~-~~g-----------~lWigt~~-Gl~~~~~~~~~~~~-----------------~~~~~~~l~~~~ 147 (758)
T 3ott_A 98 ETDFPTDVRTMAL-QGD-----------TLWLGALN-GLYTYQLQSRKLTS-----------------FDTRRNGLPNNT 147 (758)
T ss_dssp SCCCCSCEEEEEE-ETT-----------EEEEEETT-EEEEEETTTCCEEE-----------------ECHHHHCCSCSC
T ss_pred ccCCCceEEEEEe-cCC-----------cEEEEcCC-cceeEeCCCCeEEE-----------------eccCCCCcCCCe
Confidence 1112234666543 232 45556555 46666643211100 000000012346
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEE-ecC----CcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCcee
Q psy4869 1043 VLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISL-YGH----KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCH 1117 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l-~~h----~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~ 1117 (2435)
|.++....+|.+.+ |..+ -+..|+..+.+..... ... ...|.++....++..|..|.. +-|..+|..+++..
T Consensus 148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~ 224 (758)
T 3ott_A 148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK 224 (758)
T ss_dssp EEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence 88888888887665 5544 4778887766543221 111 224888888777776665664 45888888766543
Q ss_pred EEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe--ecccccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1118 KSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS--LYGHKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1118 ~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
.........|.++....++.+.+ |.. +-+.+++..+... ..+..... ..-....|.++....+|. |..|+..|
T Consensus 225 ~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G- 299 (758)
T 3ott_A 225 QTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG- 299 (758)
T ss_dssp EEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-
T ss_pred eccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-
Confidence 22111234578888877776554 444 4588888765432 11110000 001234688888877765 45555556
Q ss_pred EEEEEccCCceeeEee-------ccCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCc--eEEEEeeCC-------c--
Q psy4869 1196 VKVWGLDYGDCHKSLL-------AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFE--RIVTLHFNP-------N-- 1257 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~-------~h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~--~v~~~~~~~-------~-- 1257 (2435)
+.++... .. ...+. .....|.++.-..++. |..|+.+| +..++..... ....+.... .
T Consensus 300 l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 375 (758)
T 3ott_A 300 ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRI 375 (758)
T ss_dssp EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCE
T ss_pred ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCce
Confidence 5544332 11 11111 1134688888777776 45556554 6666654321 111111100 0
Q ss_pred --ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecC
Q psy4869 1258 --VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLD 1335 (2435)
Q Consensus 1258 --~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~d 1335 (2435)
.+......|..|+ ++-+..|+....... . ..............|.++....+|+ |-+|+..
T Consensus 376 ~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~ 438 (758)
T 3ott_A 376 RHIYEDKEQQLWIAT-DGSINRYDYATRQFI-H--------------YNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCL 438 (758)
T ss_dssp EEEEECTTSCEEEEE-TTEEEEEETTTTEEE-E--------------EEEECCC--CBSSSEEEEEECTTSE-EEEEESS
T ss_pred EEEEECCCCCEEEEe-CCcHhhcCcCCCcEE-E--------------eecCCCcCCCCCceEEEEEEcCCCC-EEEEECC
Confidence 0111223355565 456777876422110 0 0000000000134578888777765 5667777
Q ss_pred CeEEEEEcccc-----eEE---EEec---C-CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEecc---cccc
Q psy4869 1336 TTVKIFFLDTF-----KFF---ISLY---G-HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA---HEDS 1400 (2435)
Q Consensus 1336 G~V~v~d~~~~-----k~i---~~~~---~-h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~~---h~~~ 1400 (2435)
+.|.+|+.++. +.+ ..+. + ....|.++...++|++.+.++..+-|..+|..+++....... ....
T Consensus 439 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~ 518 (758)
T 3ott_A 439 GGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKS 518 (758)
T ss_dssp SCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGC
T ss_pred CceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcc
Confidence 77888886531 111 1111 1 123488999999999777444445578889888765543211 1346
Q ss_pred eEEEEEeeCCCEEEEEeCCCcEEEEECCCc
Q psy4869 1401 VTGVTFVPKTHYFFTTSKDGRVKQWDADNF 1430 (2435)
Q Consensus 1401 V~~laf~P~~~~laSgg~Dg~V~lWd~~~~ 1430 (2435)
++++..+.++.+.+.. . +.|..+|..+.
T Consensus 519 ~~~i~~d~~g~lWigt-~-~Gl~~~~~~~~ 546 (758)
T 3ott_A 519 PNYLLCDEDGLLWVGF-H-GGVMRINPKDE 546 (758)
T ss_dssp EEEEEECTTSCEEEEE-T-TEEEEECC--C
T ss_pred cceEEECCCCCEEEEe-c-CceEEEecCCC
Confidence 8899988888777644 3 45888887653
No 304
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.25 E-value=4.9e-05 Score=89.20 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=126.2
Q ss_pred cccCcccCCCeEEEEEeCCC--eEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEE
Q psy4869 451 NSCDPVRRGQLLIASGSDDC--TVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNSVVQKL 527 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg--~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~~v~~l 527 (2435)
..+.|. + ..++.+.+.+| .|+++|+.+++.+.............+.++++.|+... .++.+.+||..+.+.+.++
T Consensus 46 qGL~~~-~-~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 46 EGFFYR-N-GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEE-T-TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred ceEEEE-C-CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 456665 3 36777777766 89999999999988876544443333333456666654 5889999999999999998
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-cccCeEEEEEcCCCCEEEEecCCCeEE
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN-FEKNLLRCAWSVSGLYVTAGSADKCVY 606 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~-~~~~i~~v~~spdg~~Lasgs~Dg~V~ 606 (2435)
..... ...+.+|+..|+.+..+++|.++|..+ .+.+..+...... .-..+..+.|. +|+..+..-.++.|.
T Consensus 124 ~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T----~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 124 NYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPES----LTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp ECSSC---CCCEEECSSCEEECCSSSEEEEECTTT----CSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred ECCCC---ceEEecCCCEEEEECCCCeEEEEcCCC----CeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 75332 233446788777777788899999874 3444444332111 01234456776 777665555688999
Q ss_pred EEECCCCcEEEEecCC------------CCCeeEEEEcCCCCEEEEEEC
Q psy4869 607 IWDTTTRRIAYKLPGH------------NGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h------------~~~V~~l~fspd~~~Lasgs~ 643 (2435)
+.|.++++.+..+.-. ....+.|+|+|+++.|+..+.
T Consensus 196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999999998887542 135689999999887777663
No 305
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.23 E-value=0.00015 Score=90.23 Aligned_cols=239 Identities=12% Similarity=0.091 Sum_probs=146.1
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeC------------------CCCCeeEEEEccCCCEEEEEeCC
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSG------------------HTGAVMDLKFSTDGCHIFTCSTD 426 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~------------------h~~~V~~l~~s~dg~~L~s~s~D 426 (2435)
..+++++++|+++.++..++.|..||..+.......... ....+..|++.+++..|+.+...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 345788999997888889999999987653222111100 11357899999733456666555
Q ss_pred CeEEEEECCCCceEEEEec-----cCccccccCccc-CCCeEEEEEe----------------CCCeEEEEeCCCCcceE
Q psy4869 427 QTLAVWDLEKGQRIKKMKG-----HSTFVNSCDPVR-RGQLLIASGS----------------DDCTVKVWDPRKKNQAV 484 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~-----h~~~v~sv~~~~-~~~~llasgs----------------~Dg~I~vwD~~~~~~~~ 484 (2435)
+.|..+|..+++. ..+.. .....+.+.+.+ ++..++.... .++.|..||..+++...
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6688888765542 22211 112356677778 7754444322 13678888887665433
Q ss_pred eecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCc--EEEEEecCCCCEEEEEEcCCCCEEEEEEC----------
Q psy4869 485 SMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTNS--VVQKLRGHSDTVTGLSLSPDGSYILSNAM---------- 551 (2435)
Q Consensus 485 ~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~~--~v~~l~~h~~~V~~i~~spdg~~las~s~---------- 551 (2435)
........+.++++|+|++|+++. ..+.|++||+.... ....+....+ ...|++.++|++.++...
T Consensus 180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~ 258 (322)
T 2fp8_A 180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRV 258 (322)
T ss_dssp EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCE
T ss_pred eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCC
Confidence 322233456799999999777764 56899999987521 1122211223 788999999987766544
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
.+.|..+|.. ++.+..+.......-..+..+++ .+|+++++...++.|.++++.
T Consensus 259 ~~~v~~~d~~-----G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 259 DPKGIKFDEF-----GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEEEEECTT-----SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ccEEEEECCC-----CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 3567777743 45555554322111123455555 466666666677889888875
No 306
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.22 E-value=0.00021 Score=85.02 Aligned_cols=193 Identities=9% Similarity=0.044 Sum_probs=134.5
Q ss_pred cEEEEEECCCCCEEEEEeC--CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCCceE
Q psy4869 364 EIFCSKYHPDGQYIASSGY--DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKGQRI 440 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~--Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg~~v 440 (2435)
....+.|+++|.++++.+. ++.|+++|..++........+.......+++. ++.|+.+. .++.+.++|..+++.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999998765555543 57999999986543322211222222345554 55666655 5789999999999999
Q ss_pred EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc------ccEEEEEECCCCCEEEEEecCCeEE
Q psy4869 441 KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT------YQVTSVAFNDTAECVLTGGIDNDIK 514 (2435)
Q Consensus 441 ~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~------~~v~sv~~sp~g~~l~sgs~dg~V~ 514 (2435)
.++... .-....+.+++..++++- .++.|.++|..+.+....+... ..++.+.|. +|+..+....++.|.
T Consensus 100 ~~i~~g--~~~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQ--MKDGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECC--SSSCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECC--CCCeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 988643 111233566777777765 5889999999998877776432 136788888 675444444679999
Q ss_pred EEECCCCcEEEEEecC-------------CCCEEEEEEcCCCCEEE-EEECCCcEEEEEcCC
Q psy4869 515 MWDLRTNSVVQKLRGH-------------SDTVTGLSLSPDGSYIL-SNAMDNTVRIWDIRP 562 (2435)
Q Consensus 515 lwD~~s~~~v~~l~~h-------------~~~V~~i~~spdg~~la-s~s~Dg~I~lWdl~~ 562 (2435)
+.|..+++.+..+.-. ....++|+|+|+++.|+ ++...+++...++..
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 9999999999888531 13669999999987655 555788898888864
No 307
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.18 E-value=0.00011 Score=86.07 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred EEEEEEcCCCCEEEEEECCC--cEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEE
Q psy4869 1043 VLCARVSPDSKLLAVSLLDT--TVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKS 1119 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~~dg--~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~ 1119 (2435)
...+.|+ ++.++.+.+.+| .|+++|.++++.+..+.-.. ........++++.|+... .++.+.+||.++.+.+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t 122 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS 122 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence 3678898 665555555555 89999999999998886432 333322233455555554 588999999999999999
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccc-cCeEEEEEeCCCCEEEEEeCCCcEEE
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHK-LPVLSLDMSYDSTLIATGSGDRTVKV 1198 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~sgs~Dg~V~i 1198 (2435)
+...... ..++ ++++.|+.+..++.|.++|..+.+....+.... .+.. ..++.+.|. +|...+..-.++.|.+
T Consensus 123 i~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~--~g~~~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 123 FNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA--HGEELPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE--TTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc--CCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence 8753322 3444 467777777778899999999988877765211 1111 345667877 6654444446889999
Q ss_pred EEccCCceeeEeecc------------CCCEEEEEEeeCCCEEEEEEC
Q psy4869 1199 WGLDYGDCHKSLLAH------------EDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1199 wd~~t~~~~~~~~~h------------~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
.|.++++.+..+... .+-.+.|+|+|+++.|++.+.
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 999999988777531 135689999998888777763
No 308
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.06 E-value=0.00045 Score=85.79 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=149.1
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEecc--------------------CccccccCcccCCCeEEEE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGH--------------------STFVNSCDPVRRGQLLIAS 465 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h--------------------~~~v~sv~~~~~~~~llas 465 (2435)
....+++|++++++++++..++.|..||..+++.. .+... ......+++.+.+..++++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 45677889999887888888999999998765433 22210 1234556666533344444
Q ss_pred EeCCCeEEEEeCCCCcceEeec-----CcccEEEEEECC-CCCEEEEEec-----------------CCeEEEEECCCCc
Q psy4869 466 GSDDCTVKVWDPRKKNQAVSMN-----NTYQVTSVAFND-TAECVLTGGI-----------------DNDIKMWDLRTNS 522 (2435)
Q Consensus 466 gs~Dg~I~vwD~~~~~~~~~~~-----~~~~v~sv~~sp-~g~~l~sgs~-----------------dg~V~lwD~~s~~ 522 (2435)
...+.|..+|...+....... .....+.+++.+ +|++.++-.. +|.|..||..+++
T Consensus 98 -d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 176 (322)
T 2fp8_A 98 -DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE 176 (322)
T ss_dssp -ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred -ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence 333458888877553322111 113478899999 9986665432 3789999988776
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 523 VVQKLRGHSDTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 523 ~v~~l~~h~~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
....... -.....|+|+|+|+.|+.+ ...+.|.+|++..... .. ...+... .. ...+++.++|++.++...
T Consensus 177 ~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~-~~~~~~~----~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 177 TTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GT-AEVLVKI----PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TC-EEEEEEC----SS-EEEEEECTTSCEEEEEEE
T ss_pred EEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-Cc-cceEEeC----CC-CCCeEECCCCCEEEEecC
Confidence 4332222 2334679999999976655 5578999999874211 11 1122111 12 567899999987777644
Q ss_pred ----------CCeEEEEECCCCcEEEEecCCC----CCeeEEEEcCCCCEEEEEECCCcEEEecCC
Q psy4869 602 ----------DKCVYIWDTTTRRIAYKLPGHN----GSVNDVQFHPKEPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 602 ----------Dg~V~iwd~~s~~~~~~l~~h~----~~V~~l~fspd~~~Lasgs~Dg~I~vWd~~ 653 (2435)
.+.|..+|. .++.+..+.... ..++.+++ .++.++++....+.|..++++
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 467888887 477777665432 45777777 355555555567788888775
No 309
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.04 E-value=0.00038 Score=81.08 Aligned_cols=183 Identities=13% Similarity=0.082 Sum_probs=124.1
Q ss_pred ccccCcccCCCeEEEEEeCC--CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE
Q psy4869 450 VNSCDPVRRGQLLIASGSDD--CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTG-GIDNDIKMWDLRTNSVVQK 526 (2435)
Q Consensus 450 v~sv~~~~~~~~llasgs~D--g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sg-s~dg~V~lwD~~s~~~v~~ 526 (2435)
...+.|.. ..++.+.+.+ ..|+.+|+.+++.+.................++.|+.. -.++.+.+||..+.+.+.+
T Consensus 23 tqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 23 TEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp EEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred cccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 34566654 4677777775 48999999999998887544443333233334555544 4689999999999999999
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccccc-ccCeEEEEEcCCCCEEEEecCCCeE
Q psy4869 527 LRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNF-EKNLLRCAWSVSGLYVTAGSADKCV 605 (2435)
Q Consensus 527 l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~-~~~i~~v~~spdg~~Lasgs~Dg~V 605 (2435)
+...... ..+ .+|+..|+.+..++.|.++|..+. +.+..+....... -..+..+.|. +|+..+..-.+..|
T Consensus 101 i~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~----~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 101 FRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTL----QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTC----CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred EeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCC----eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9754322 234 457777777777999999998753 4444444321111 1234556665 67766555568899
Q ss_pred EEEECCCCcEEEEecCC-------------CCCeeEEEEcCCCCEEEEEE
Q psy4869 606 YIWDTTTRRIAYKLPGH-------------NGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 606 ~iwd~~s~~~~~~l~~h-------------~~~V~~l~fspd~~~Lasgs 642 (2435)
.+.|.++|+.+..+.-. ....+.|+|+|+++.|+..+
T Consensus 173 ~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 173 ARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999998887521 13568999999888776666
No 310
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.02 E-value=0.00017 Score=84.63 Aligned_cols=179 Identities=9% Similarity=-0.002 Sum_probs=124.0
Q ss_pred cccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCcccE--EEEEECCCCCEEE-EEecCCeEEEEECCCCcEEEEE
Q psy4869 451 NSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNTYQV--TSVAFNDTAECVL-TGGIDNDIKMWDLRTNSVVQKL 527 (2435)
Q Consensus 451 ~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~~~v--~sv~~sp~g~~l~-sgs~dg~V~lwD~~s~~~v~~l 527 (2435)
..+.|. +..++.+.+.++.|+++|+.+++.+... ..... ..+++. ++.|+ ..-.++.+.+||..+.+.+.++
T Consensus 58 qGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp EEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 345544 3578888999999999999999988776 43333 335554 44444 4456899999999999999998
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccc-cccCeEEEEEcCCCCEEEEecCCCeEE
Q psy4869 528 RGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHN-FEKNLLRCAWSVSGLYVTAGSADKCVY 606 (2435)
Q Consensus 528 ~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~-~~~~i~~v~~spdg~~Lasgs~Dg~V~ 606 (2435)
...... ..++ +|++.|+.+..+++|.++|..+ .+.+..+...... .-..+..+.|. +|+..+..-.++.|.
T Consensus 133 ~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T----~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 133 RYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDG----FALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp ECSSCC-CCEE--EETTEEEEECSSSEEEEECTTT----CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred eCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCC----CeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence 753222 2333 6788888888899999999874 3444444422111 11234566776 776555555688999
Q ss_pred EEECCCCcEEEEecCC-------------CCCeeEEEEcCCCCEEEEEE
Q psy4869 607 IWDTTTRRIAYKLPGH-------------NGSVNDVQFHPKEPIIMSAS 642 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h-------------~~~V~~l~fspd~~~Lasgs 642 (2435)
+.|.++++.+..+.-. ....+.|+|+|+++.|+..+
T Consensus 205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 9999999998887532 13578999999877555554
No 311
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.02 E-value=9e-05 Score=101.82 Aligned_cols=271 Identities=10% Similarity=0.064 Sum_probs=154.1
Q ss_pred EEEECC-CCCEEEEEeCCC-----------eEEEEecCCce-eeEEEe-eCCCCCeeEEEEccCCCEEEEEeC-CCeEEE
Q psy4869 367 CSKYHP-DGQYIASSGYDR-----------QIFIWSVYGEC-ENIGVM-SGHTGAVMDLKFSTDGCHIFTCST-DQTLAV 431 (2435)
Q Consensus 367 ~l~fsp-dg~~Lasgs~Dg-----------~I~iwd~~~~~-~~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~-Dg~I~v 431 (2435)
.+++.+ +|++++.|+.+. .+.+||..... ..+..+ ..+......+++..+++.++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 445666 888888887643 58889876532 222222 223444556788889999999885 458999
Q ss_pred EECCCCceEEEEeccCcccc-ccCcccCCCeEEEEEe-CC-----CeEEEEeCCCCcceEee-----cCcccEEEEEECC
Q psy4869 432 WDLEKGQRIKKMKGHSTFVN-SCDPVRRGQLLIASGS-DD-----CTVKVWDPRKKNQAVSM-----NNTYQVTSVAFND 499 (2435)
Q Consensus 432 wd~~tg~~v~~l~~h~~~v~-sv~~~~~~~~llasgs-~D-----g~I~vwD~~~~~~~~~~-----~~~~~v~sv~~sp 499 (2435)
||..+++....-..+..... ++...+++ .+++.|+ .+ ..+.+||+.+......- .....-....+..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~ 348 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 348 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence 99988765543222222222 22334455 4566666 44 56899999876543320 0000000112234
Q ss_pred CCCEEEEEecCC---------eEEEEECCCCcEEEEEecCCC---------CEEEEEEcC-CCCEEEEEECCC-------
Q psy4869 500 TAECVLTGGIDN---------DIKMWDLRTNSVVQKLRGHSD---------TVTGLSLSP-DGSYILSNAMDN------- 553 (2435)
Q Consensus 500 ~g~~l~sgs~dg---------~V~lwD~~s~~~v~~l~~h~~---------~V~~i~~sp-dg~~las~s~Dg------- 553 (2435)
++..++.|+.+| .+..||..+......+..+.. .-.++.|.. +++.++.|+.++
T Consensus 349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~ 428 (656)
T 1k3i_A 349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428 (656)
T ss_dssp TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence 566666665554 467899888765443332211 224455543 677888887543
Q ss_pred ----cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----------CeEEEEECCCCcEEE-
Q psy4869 554 ----TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----------KCVYIWDTTTRRIAY- 617 (2435)
Q Consensus 554 ----~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----------g~V~iwd~~s~~~~~- 617 (2435)
.|.+||.... ... ............-..+...|+|++++.|+.+ ..+.+||..+.+-..
T Consensus 429 ~~~~~v~~yd~~~~----~W~-~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 429 TNAHIITLGEPGTS----PNT-VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp CCEEEEECCSTTSC----CEE-EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CcceEEEcCCCCCC----Cee-EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 5677776531 111 1110011111122345667899999999864 468999998765432
Q ss_pred -EecCCCCCeeEEEEcCCCCEEEEEEC
Q psy4869 618 -KLPGHNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 618 -~l~~h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
.+......-.+..+.|++++++.||.
T Consensus 504 ~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCccccccHhhcCCCcEEEecCCC
Confidence 12112222334556789999999885
No 312
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.99 E-value=0.00015 Score=85.10 Aligned_cols=184 Identities=13% Similarity=0.039 Sum_probs=128.9
Q ss_pred CeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee
Q psy4869 407 AVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM 486 (2435)
Q Consensus 407 ~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~ 486 (2435)
-...|.|+ ++.++.+.+.+|.|+++|+++++.+..+ -.. .....-....+..+.+....++.+.+||..+.+.+..+
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~-~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti 132 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLG-NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTT 132 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECT-TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC-CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEE
Confidence 34788887 3556667778889999999999988777 222 22221123345567777888999999999999998888
Q ss_pred cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEec--CC---CCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 487 NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRG--HS---DTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 487 ~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~--h~---~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
.....-..++ ++++.|+....++.|+++|..+.+.+.++.- +. ..++.+.|. +|+..+..-.+..|.+.|.+
T Consensus 133 ~~~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~ 209 (268)
T 3nok_A 133 RYSGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPA 209 (268)
T ss_dssp ECSSCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTT
T ss_pred eCCCceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCC
Confidence 6544323333 5788888888899999999999999888753 22 245778887 77555444468899999987
Q ss_pred CCCCCCceEEEEeCc---------ccccccCeEEEEEcCCCC-EEEEec
Q psy4869 562 PYVPGERCVKVMSGH---------QHNFEKNLLRCAWSVSGL-YVTAGS 600 (2435)
Q Consensus 562 ~~~~~~~~v~~~~~h---------~~~~~~~i~~v~~spdg~-~Lasgs 600 (2435)
.++.+..+.-. ......-...++|.|+++ ++++|-
T Consensus 210 ----TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 210 ----TGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ----TCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ----CCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 45666666532 111223568899999764 555553
No 313
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.97 E-value=0.003 Score=77.71 Aligned_cols=229 Identities=11% Similarity=0.034 Sum_probs=142.3
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-eEEEEeCCCCcceE
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-TVKVWDPRKKNQAV 484 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-~I~vwD~~~~~~~~ 484 (2435)
.....++|+++++.+++-..++.|..||.+. +....+.. ......+++.+++..+++....++ .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 4567899999988666666788999999864 33333332 335677888888864444333333 57777777766433
Q ss_pred ee--cCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEEe---------cCCCCEEEEEEcCCCCEEEEEE-C
Q psy4869 485 SM--NNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV-VQKLR---------GHSDTVTGLSLSPDGSYILSNA-M 551 (2435)
Q Consensus 485 ~~--~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~-v~~l~---------~h~~~V~~i~~spdg~~las~s-~ 551 (2435)
.. ........++..+++..+++-..+|.|+.+|...++. +.... ..-...+.| +||+++|+.+. .
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~ 187 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE 187 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT
T ss_pred EEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC
Confidence 22 2223345566655554444444589999999876532 22111 111245666 88887766554 5
Q ss_pred CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE--EecCCCCCeeEE
Q psy4869 552 DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY--KLPGHNGSVNDV 629 (2435)
Q Consensus 552 Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~--~l~~h~~~V~~l 629 (2435)
.++|..||+.... .......+... .....+++.++|+++++....+.|.++|.. ++... .+......++++
T Consensus 188 ~~~I~~~~~~~~g-~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 188 KMLLLRIPVDSTD-KPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTEEEEEEBCTTS-CBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCEEEEEEeCCCC-CCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 7899999987310 00111111110 123457899999988887778899999975 66533 333334668999
Q ss_pred EEc---CCCCEEEEEECCC
Q psy4869 630 QFH---PKEPIIMSASSDK 645 (2435)
Q Consensus 630 ~fs---pd~~~Lasgs~Dg 645 (2435)
+|. |+++.|+.++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8888777776554
No 314
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.94 E-value=0.0013 Score=76.56 Aligned_cols=184 Identities=10% Similarity=0.028 Sum_probs=126.0
Q ss_pred CCEEEEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcC-EEEEEEcCCCCEEE-EEECCCcEEEEEccCCce
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLP-VLSLDMSYDSTLIA-TGSGDRTVKVWGLDYGDC 1116 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~-V~sl~~spdg~~L~-Sgs~Dg~I~vWd~~t~~~ 1116 (2435)
.-...+.|+. +.++.+.+.+ ..|+++|..+++.+..+...... --.+++ +++.|+ ..-.++.+.+||.++.+.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcE
Confidence 4456788986 4444444443 48999999999999887643221 123333 344444 445688999999999999
Q ss_pred eEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecc-cccCeEEEEEeCCCCEEEEEeCCCc
Q psy4869 1117 HKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYG-HKLPVLSLDMSYDSTLIATGSGDRT 1195 (2435)
Q Consensus 1117 ~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~sgs~Dg~ 1195 (2435)
+.++...... ..++ +++..|+.+..++.|.++|..+.+....+.... .+ .-..++.+.+. +|..++..-.+..
T Consensus 98 ~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~--~g~~~~~lNeLe~~-~G~lyanvw~s~~ 171 (243)
T 3mbr_X 98 RARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA--GGRPLDNLNELEWV-NGELLANVWLTSR 171 (243)
T ss_dssp EEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE--TTEECCCEEEEEEE-TTEEEEEETTTTE
T ss_pred EEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc--CCcccccceeeEEe-CCEEEEEECCCCe
Confidence 9998754333 4554 457777777778999999999998877765211 11 11345677776 5654444446789
Q ss_pred EEEEEccCCceeeEeecc-------------CCCEEEEEEeeCCCEEEEEE
Q psy4869 1196 VKVWGLDYGDCHKSLLAH-------------EDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1196 V~iwd~~t~~~~~~~~~h-------------~~~V~~i~~spd~~~lvsgs 1233 (2435)
|.+.|.++++.+..+.-. .+-.+.|+|+|+++.|++.+
T Consensus 172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 999999999988776521 13568999999877777766
No 315
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.90 E-value=0.01 Score=74.42 Aligned_cols=245 Identities=11% Similarity=0.025 Sum_probs=152.7
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeeccc
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIP 964 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~ 964 (2435)
+..+|.+..+++ +|..+....|+..++........+.....+.+++|.+.++.|... ...+.|..+++..+.....+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCC-EEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCc-eeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 455677777744 555666677888998887766666666678899999877766654 468899999988665333222
Q ss_pred ccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEE
Q psy4869 965 AHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1044 (2435)
Q Consensus 965 ~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 1044 (2435)
........+++.+.+ +..+++-...+.|.+.+++.... ..+ ....-....
T Consensus 113 ~~~~~p~glavd~~~---------g~ly~~d~~~~~I~~~~~dG~~~---------------~~l------~~~~l~~P~ 162 (349)
T 3v64_C 113 TGLESPGGLAVDWVH---------DKLYWTDSGTSRIEVANLDGAHR---------------KVL------LWQSLEKPR 162 (349)
T ss_dssp SSCSCCCEEEEETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE------ECTTCSCEE
T ss_pred CCCCCccEEEEecCC---------CeEEEEcCCCCeEEEEcCCCCce---------------EEE------EeCCCCCcc
Confidence 222334567776543 24555555677888887653110 000 001124578
Q ss_pred EEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEEe
Q psy4869 1045 CARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSLL 1121 (2435)
Q Consensus 1045 ~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l~ 1121 (2435)
.++++|.+..|+..... +.|..++.+.......+...-.....|+|++++..|+.+.. .+.|..++++.......+.
T Consensus 163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe
Confidence 99999988777777643 67888887654332222323345789999987776666654 6679999986443333333
Q ss_pred ccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1122 AHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1122 ~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
........+++. ++..+++-...+.|..++..+++....+
T Consensus 243 ~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 243 QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 334456777773 4444445455677888876555544443
No 316
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.89 E-value=0.0043 Score=78.98 Aligned_cols=252 Identities=9% Similarity=-0.019 Sum_probs=158.7
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEEec
Q psy4869 367 CSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 367 ~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l~~ 445 (2435)
|.+..+.+ +|+.+ ....|+..++.+.... .+......+..++|++.+..|+.+ ...+.|+.++++.+.....+..
T Consensus 81 C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~--~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGPEP-VLLFA-NRIDIRQVLPHRSEYT--LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSSCC-EEEEE-CBSCEEEECTTSCCCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccccc-eeEee-cCccceeeccCCCcEE--EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 44445533 34333 3456888887654222 222234568899999866665554 4568899999976654444443
Q ss_pred cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec-C-CeEEEEECCCCc
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI-D-NDIKMWDLRTNS 522 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~-d-g~V~lwD~~s~~ 522 (2435)
.......+++.+.+..++++-...+.|.+.++.......... .......++++|.+.+|+.... . +.|+.+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 334456677777777888887888899999987554433332 3356789999998877776654 3 689999987544
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC
Q psy4869 523 VVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA 601 (2435)
Q Consensus 523 ~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~ 601 (2435)
........-...+.|+|+|++..|+.+. ..+.|..+|+.. ......+... ......+++ ..+.++++-..
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~----~~~P~giav-~~~~ly~td~~ 307 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----SHRKAVISQG----LPHPFAITV-FEDSLYWTDWH 307 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS----CSCEEEECSS----CSSEEEEEE-ETTEEEEEETT
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC----CeeEEEEECC----CCCceEEEE-ECCEEEEeeCC
Confidence 3333333344578999998777666554 567899998763 1111222211 123456777 34566666667
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCeeEEEE
Q psy4869 602 DKCVYIWDTTTRRIAYKLPGHNGSVNDVQF 631 (2435)
Q Consensus 602 Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~f 631 (2435)
.+.|..+|..+|+.+..+.........|++
T Consensus 308 ~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 308 TKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 888999997788776666544344444443
No 317
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.88 E-value=0.0075 Score=76.75 Aligned_cols=244 Identities=11% Similarity=0.020 Sum_probs=151.4
Q ss_pred ceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCCceeecccc
Q psy4869 887 EVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAGEILEDIPA 965 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg~~v~~~~~ 965 (2435)
.-+|.+..++ .+|..+....|+.+++........+.....+.+++|.+.++.|... ...+.|..+++..+.....+..
T Consensus 78 ~~~C~~~~~~-~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 78 RRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp SSCEEECSSC-CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred CCeECCcccc-ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3446666664 4566666688999999887776666666678899999876666654 4688999999886654332222
Q ss_pred cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEE
Q psy4869 966 HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1045 (2435)
Q Consensus 966 h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 1045 (2435)
.......+++.+.+ +..+++-...+.|.+.+++.... ..+ ....-.....
T Consensus 157 ~~~~p~glavd~~~---------g~lY~~d~~~~~I~~~~~dg~~~---------------~~l------~~~~l~~P~g 206 (386)
T 3v65_B 157 GLESPGGLAVDWVH---------DKLYWTDSGTSRIEVANLDGAHR---------------KVL------LWQSLEKPRA 206 (386)
T ss_dssp SCSCCCCEEEETTT---------TEEEEEETTTTEEEECBTTSCSC---------------EEE------ECSSCSCEEE
T ss_pred CCCCccEEEEEeCC---------CeEEEEcCCCCeEEEEeCCCCce---------------EEe------ecCCCCCCcE
Confidence 22233456666432 23455555566777666542110 000 0011245789
Q ss_pred EEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec
Q psy4869 1046 ARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA 1122 (2435)
Q Consensus 1046 l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~ 1122 (2435)
++++|.+..|+..... +.|..++.+.......+...-.....|+|++++..|+.+. ..+.|..++++.......+..
T Consensus 207 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~ 286 (386)
T 3v65_B 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ 286 (386)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS
T ss_pred EEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC
Confidence 9999988888877653 5788888765443333333344578999998776666655 466799999864433333333
Q ss_pred cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1123 HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1123 h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
.......+++. .+..+++-...+.|..+|..+++....+
T Consensus 287 ~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 287 GLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp SCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 34456777773 4455555556678888886666554444
No 318
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.87 E-value=0.0064 Score=76.25 Aligned_cols=253 Identities=9% Similarity=-0.018 Sum_probs=156.8
Q ss_pred EEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCceEEEE
Q psy4869 365 IFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQRIKKM 443 (2435)
Q Consensus 365 V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~v~~l 443 (2435)
.+|.+..+++.++++ ....|+..++.+... ..+......+..++|++.+..|+.+ ...+.|+.++++.+.....+
T Consensus 36 ~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 36 RSCKALGPEPVLLFA--NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SCEEESSSCCEEEEE--CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccccccCceeEee--cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345555554433333 344588888765422 2222233458899999866666555 45788999999766544444
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec-C-CeEEEEECCC
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI-D-NDIKMWDLRT 520 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~-d-g~V~lwD~~s 520 (2435)
.........+++.+.+..++++-...+.|.+.++......... ........++++|.+..|+.... . +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 3333445667777777788888788889999998765443333 23356789999997777666554 3 7899998875
Q ss_pred CcEEEEEecCCCCEEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 521 NSVVQKLRGHSDTVTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 521 ~~~v~~l~~h~~~V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
......+...-...++|+|+|++..|+.+. ..+.|..+|+.. ......+... ......+++ ..+..+++-
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG----~~~~~~~~~~----~~~P~giav-~~~~ly~td 262 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG----SHRKAVISQG----LPHPFAITV-FEDSLYWTD 262 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECSS----CSSEEEEEE-ETTEEEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC----CceEEEEeCC----CCCceEEEE-ECCEEEEec
Confidence 433222222334578999998777666554 567899999863 1111122211 123456666 355566666
Q ss_pred cCCCeEEEEECCCCcEEEEecCCCCCeeEEE
Q psy4869 600 SADKCVYIWDTTTRRIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 600 s~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~ 630 (2435)
...+.|..+|..+|+.+..+.........|+
T Consensus 263 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp TTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred CCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 6778888888777776666644333344443
No 319
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.81 E-value=0.00031 Score=96.43 Aligned_cols=274 Identities=11% Similarity=-0.021 Sum_probs=151.7
Q ss_pred eEEEEEEec-CCCEEEEEeCCC-----------eEEEEEccCCceee--ccc-ccccceeEEEEecCCCCCCCcCCcceE
Q psy4869 927 YALSVCFVP-GDRHVLVGTKDG-----------RLLIVDIGAGEILE--DIP-AHSQELWSVAMLPDQFNPNVYLPLQIQ 991 (2435)
Q Consensus 927 ~v~~vafsp-dg~~Lavg~~dg-----------~V~vwd~~sg~~v~--~~~-~h~~~V~sv~~s~d~~~~~~~~p~~~~ 991 (2435)
...++++.+ +++.++.|+.+. .+.+||+.+++... .++ .+.....++++..++ ..
T Consensus 187 ~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g----------~l 256 (656)
T 1k3i_A 187 VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG----------QI 256 (656)
T ss_dssp CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS----------CE
T ss_pred CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCC----------CE
Confidence 334667788 888888876432 58899998887322 221 122234456666664 57
Q ss_pred EEEEeC-CCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEE-CC-----CcE
Q psy4869 992 VVTGGG-DKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL-LD-----TTV 1064 (2435)
Q Consensus 992 l~sgs~-Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~-~d-----g~V 1064 (2435)
++.|+. +..+.+||.....+... . .+...+.-.+++..++|+++++|+ .+ ..+
T Consensus 257 yv~GG~~~~~v~~yd~~t~~W~~~--------~------------~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~ 316 (656)
T 1k3i_A 257 VVTGGNDAKKTSLYDSSSDSWIPG--------P------------DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNG 316 (656)
T ss_dssp EEECSSSTTCEEEEEGGGTEEEEC--------C------------CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred EEeCCCCCCceEEecCcCCceeEC--------C------------CCCccccccceEEecCCeEEEEeCcccCCcccccc
Confidence 777774 56788888754332110 0 011122234556668999999998 33 568
Q ss_pred EEEEcCCCeEEEEE----ecCCcCEEEEEEcCCCCEEEEEECCC---------cEEEEEccCCceeEEEeccC-------
Q psy4869 1065 KIFFLDTFKFFISL----YGHKLPVLSLDMSYDSTLIATGSGDR---------TVKVWGLDYGDCHKSLLAHE------- 1124 (2435)
Q Consensus 1065 ~i~d~~~~~~~~~l----~~h~~~V~sl~~spdg~~L~Sgs~Dg---------~I~vWd~~t~~~~~~l~~h~------- 1124 (2435)
.+||..+.+....- ......-....+..++..++.|+.+| .+..||..+.........+.
T Consensus 317 e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 317 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred eEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 99998876543320 00000000011223455555555443 46788887766443332221
Q ss_pred --CCEEEEEEcc-CCCEEEEEeCCC-----------cEEEEeCCCcceeEEEEEEEeecccccC-eEEEEEeCCCCEEEE
Q psy4869 1125 --DSVTGVTFVP-KTHYFFTTSKDG-----------RVKQWDADNFERIVTLHFFISLYGHKLP-VLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1125 --~~V~~v~fsp-~~~~l~s~s~Dg-----------~V~iwD~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s 1189 (2435)
..-.++.|.. ++++++.|+.++ .|.+||..+..-.... ....+... -.+++..++++.++.
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~----~~~mp~~R~~~~~~~l~~g~i~v~ 472 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA----SNGLYFARTFHTSVVLPDGSTFIT 472 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC----TTCCSSCCBSCEEEECTTSCEEEE
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc----cCCCCCCcccCCeEECCCCCEEEE
Confidence 1234555544 677777877532 5778887664322111 00111222 234456679999999
Q ss_pred EeCC-----------CcEEEEEccCCceee--EeeccCCCEEEEEEeeCCCEEEEEEC
Q psy4869 1190 GSGD-----------RTVKVWGLDYGDCHK--SLLAHEDSVTGVTFVPKTHYFFTTSK 1234 (2435)
Q Consensus 1190 gs~D-----------g~V~iwd~~t~~~~~--~~~~h~~~V~~i~~spd~~~lvsgs~ 1234 (2435)
|+.+ ..+.+||..+++-.. .+...........+.++++.++.|+.
T Consensus 473 GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 473 GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 9854 568999998765321 11111222334456689998888874
No 320
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.79 E-value=0.0071 Score=74.30 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=135.0
Q ss_pred eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCC--cEEE
Q psy4869 1073 KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDG--RVKQ 1150 (2435)
Q Consensus 1073 ~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg--~V~i 1150 (2435)
+.+..+... .....++|+++++++++-..++.|..||.+. +....+. .......+++.++++++++....+ .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344444322 4567899999998777666789999999764 3333332 335688999999998655544332 4667
Q ss_pred EeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce-eeEee---------ccCCCEEEE
Q psy4869 1151 WDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC-HKSLL---------AHEDSVTGV 1220 (2435)
Q Consensus 1151 wD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~-~~~~~---------~h~~~V~~i 1220 (2435)
+|..+++...... . ........++..+++..+++-..++.|+.+|...++. +.... ..-.....|
T Consensus 100 ~d~~~g~~~~~~~----~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 100 LVKSDGTVETLLT----L-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp EECTTSCEEEEEE----C-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred EcCCCCeEEEEEe----C-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 7766655322211 1 1122234455444444444444578899999875431 11110 011123444
Q ss_pred EEeeCCCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcccccCceEEEEEECCCeEEEEEcccccccccccccccccccc
Q psy4869 1221 TFVPKTHYFFTTS-KDGRVKQWDADNFERIVTLHFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRS 1299 (2435)
Q Consensus 1221 ~~spd~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~ 1299 (2435)
+++++.|+.+. ..+.|..||+.....+ +...++
T Consensus 175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~-----------------------~~~~~~--------------------- 208 (306)
T 2p4o_A 175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKP-----------------------GEPEIF--------------------- 208 (306)
T ss_dssp --EEETTEEEEEETTTTEEEEEEBCTTSCB-----------------------CCCEEE---------------------
T ss_pred --CcCCCEEEEEeCCCCEEEEEEeCCCCCC-----------------------CccEEE---------------------
Confidence 56665554443 3455555555321000 000000
Q ss_pred cceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccceEEE--EecCCCCCeEEEEEe---cCCCEEEEE
Q psy4869 1300 HKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFI--SLYGHKLPVLSLDMS---YDSTLIATG 1374 (2435)
Q Consensus 1300 ~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~--~~~~h~~~V~~la~s---pdg~~L~sG 1374 (2435)
.. ......++++++|+++++....++|.+|+.+ ++... .+........+++|. ||++.|+..
T Consensus 209 -------~~-----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 209 -------VE-----QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVV 275 (306)
T ss_dssp -------EE-----SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred -------ec-----cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEE
Confidence 00 0123457888999887777778999999975 55532 344334568999998 898877666
Q ss_pred eCCC
Q psy4869 1375 SGDR 1378 (2435)
Q Consensus 1375 g~Dg 1378 (2435)
...+
T Consensus 276 ~~~~ 279 (306)
T 2p4o_A 276 TNGG 279 (306)
T ss_dssp ECTT
T ss_pred CCCC
Confidence 5443
No 321
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.77 E-value=0.41 Score=66.59 Aligned_cols=488 Identities=9% Similarity=0.018 Sum_probs=260.3
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCceeecc-
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEILEDI- 963 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~v~~~- 963 (2435)
..|.++....+|. |..|..+.+..||..+.+...... ....+.++.. .+ ..|.+|+.+ .|..+|.+++++..-.
T Consensus 63 ~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~-g~lWigt~~-Gl~~~~~~~~~~~~~~~ 138 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL-QG-DTLWLGALN-GLYTYQLQSRKLTSFDT 138 (758)
T ss_dssp SCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE-ET-TEEEEEETT-EEEEEETTTCCEEEECH
T ss_pred ceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe-cC-CcEEEEcCC-cceeEeCCCCeEEEecc
Confidence 4688888877774 455556678999988764332111 2234665543 34 467777766 6888998877653220
Q ss_pred ---cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccC
Q psy4869 964 ---PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE 1040 (2435)
Q Consensus 964 ---~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 1040 (2435)
......|.++....++ .|..|...| |..++.....+.. + .. ........
T Consensus 139 ~~~~l~~~~i~~i~~d~~g-----------~lWigt~~G-l~~~~~~~~~~~~--------~-------~~-~~~~~~~~ 190 (758)
T 3ott_A 139 RRNGLPNNTIYSIIRTKDN-----------QIYVGTYNG-LCRYIPSNGKFEG--------I-------PL-PVHSSQSN 190 (758)
T ss_dssp HHHCCSCSCEEEEEECTTC-----------CEEEEETTE-EEEEETTTTEEEE--------E-------CC-CCCTTCSS
T ss_pred CCCCcCCCeEEEEEEcCCC-----------CEEEEeCCC-HhhCccCCCceEE--------e-------cC-CCcccccc
Confidence 0112356666655554 455555544 5556543211100 0 00 00000112
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeEEE
Q psy4869 1041 EQVLCARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1041 ~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~~l 1120 (2435)
..|.++....++..|.+|.. +-+..|+..+.+...........|.++....+|.+.+ |..+ -|.+++..+++.....
T Consensus 191 ~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 191 LFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQHII 267 (758)
T ss_dssp CCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEEEC
T ss_pred ceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEEEE
Confidence 35888888888876666764 4588888776654322111234588888877777555 5544 5888887766543221
Q ss_pred ec-------cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEe-ecccccCeEEEEEeCCCCEEEEEeC
Q psy4869 1121 LA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFIS-LYGHKLPVLSLDMSYDSTLIATGSG 1192 (2435)
Q Consensus 1121 ~~-------h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~sgs~ 1192 (2435)
.. ....|.++....++. |..|...| +.++.... .......... .......|.++....+|.+- .|+.
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~ 342 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGA 342 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEET
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC--ceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeC
Confidence 11 234588888887776 44455556 54443221 1111110000 00123468888887777644 4455
Q ss_pred CCcEEEEEccCCc--eeeEeec-------cCCCEEEEEEeeCCCEEEEEECCCcEEEEECCCCceEEEEee-CC------
Q psy4869 1193 DRTVKVWGLDYGD--CHKSLLA-------HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHF-NP------ 1256 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~--~~~~~~~-------h~~~V~~i~~spd~~~lvsgs~Dg~I~vwD~~~~~~v~~~~~-~~------ 1256 (2435)
+| +..++..+++ ....+.. ....|.++.-..+++ |..|+ ++-|..||..+.+.. .+.. ..
T Consensus 343 ~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~-~~~~~~~~~~~~~ 418 (758)
T 3ott_A 343 NG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFI-HYNIVDNTGTYNT 418 (758)
T ss_dssp TE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEE-EEEEECCC--CBS
T ss_pred Cc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEE-EeecCCCcCCCCC
Confidence 54 6667665432 1112211 123588888777776 45556 457889998765432 2211 10
Q ss_pred -c---ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEe
Q psy4869 1257 -N---VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVS 1332 (2435)
Q Consensus 1257 -~---~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavg 1332 (2435)
. .+......|..|+..+-+.+++.+....... . ... .. .............|.++...++|...+.+
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~-~----~~~-~~---~~~~~~~~l~~~~i~~i~~d~~g~lWi~~ 489 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTS-G----QYI-AE---QNYSVHNGLSGMFINQIIPDNEGNVWVLL 489 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCS-S----EEE-CS---EEECGGGTCSCSCEEEEEECTTSCEEEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCC-c----cee-cc---cccccccccccceeeeEEEcCCCCEEEEc
Confidence 0 1112234566777666777777542100000 0 000 00 00000011112458899988888866533
Q ss_pred ecCCeEEEEEcccceEEEEecC---CCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEE-ecc-cccceEEEEEe
Q psy4869 1333 LLDTTVKIFFLDTFKFFISLYG---HKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKS-LLA-HEDSVTGVTFV 1407 (2435)
Q Consensus 1333 s~dG~V~v~d~~~~k~i~~~~~---h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~-~~~-h~~~V~~laf~ 1407 (2435)
+..+.|..||.++++....... ....+.++....+|++.+.. .+| +..|+.++++.... ..+ ....|.++...
T Consensus 490 ~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~~~~gl~~~~i~~i~~~ 567 (758)
T 3ott_A 490 YNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSISFGSFSNNEILSMTCV 567 (758)
T ss_dssp TTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBCCCCC---CCEEEEEEE
T ss_pred cCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEecccCCCccceEEEEEC
Confidence 3345688889887665433221 12457888888888876544 445 77788766653221 011 12458888774
Q ss_pred eCCCEEEEEeCCCcEEEEECCCce
Q psy4869 1408 PKTHYFFTTSKDGRVKQWDADNFE 1431 (2435)
Q Consensus 1408 P~~~~laSgg~Dg~V~lWd~~~~~ 1431 (2435)
++.+.++. . ..|..+|..+.+
T Consensus 568 -~g~lWi~t-~-~Gl~~~~~~~~~ 588 (758)
T 3ott_A 568 -KNSIWVST-T-NGLWIIDRKTMD 588 (758)
T ss_dssp -TTEEEEEE-S-SCEEEEETTTCC
T ss_pred -CCCEEEEC-C-CCeEEEcCCCce
Confidence 66655544 3 458888988654
No 322
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.74 E-value=0.029 Score=69.21 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=142.2
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCC----CceEEEEeccCccccccCccc
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEK----GQRIKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~t----g~~v~~l~~h~~~v~sv~~~~ 457 (2435)
...|+..|+...... . +......+..++|++++..|+.+ ..++.|+.+++.. ......+.........+++.+
T Consensus 9 ~~~I~~i~~~~~~~~-~-~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~ 86 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYT-S-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 86 (316)
T ss_dssp BSSEEEEETTSCCCE-E-EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred CCeEEEEECCCcceE-e-hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEee
Confidence 345788887654221 1 22234567899999876666555 4568999999875 222222332323456677766
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEecC--CeEEEEECCCCcEEEEE-ecCCCC
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGID--NDIKMWDLRTNSVVQKL-RGHSDT 533 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~d--g~V~lwD~~s~~~v~~l-~~h~~~ 533 (2435)
.+..+.++-...+.|.++|+.......... .......++++|.+..|+..... +.|..+++.... ...+ ...-..
T Consensus 87 ~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~ 165 (316)
T 1ijq_A 87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQW 165 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSC
T ss_pred cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCC
Confidence 666777777788999999987654333332 34567899999977777766543 789999886433 3333 233456
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.+.|+++|++..|+.+. ..+.|..+|+.. ........... .......+++. .+.++++-...+.|..+|..+
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg----~~~~~~~~~~~--~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTT--TTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCC----CceEEEeecCC--ccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence 78999999877776555 567899999863 11111111110 01234566764 456666666778999999888
Q ss_pred CcEEEEec
Q psy4869 613 RRIAYKLP 620 (2435)
Q Consensus 613 ~~~~~~l~ 620 (2435)
++.+..+.
T Consensus 239 g~~~~~i~ 246 (316)
T 1ijq_A 239 GSDVNLLA 246 (316)
T ss_dssp CCCCEEEE
T ss_pred CcceEEEe
Confidence 87666554
No 323
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.74 E-value=0.028 Score=69.26 Aligned_cols=231 Identities=9% Similarity=-0.048 Sum_probs=142.8
Q ss_pred EEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccC----CceeecccccccceeEE
Q psy4869 899 ALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGA----GEILEDIPAHSQELWSV 973 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~s----g~~v~~~~~h~~~V~sv 973 (2435)
+|..+....|+..|+.+.+....+.....+.+++|.+.++.|... ..++.|..+++.. ......+.........+
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 82 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEE
Confidence 455666678999999988777777766778899999977766654 4678999999876 22222222222344677
Q ss_pred EEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCC
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSK 1053 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~ 1053 (2435)
++.+.+ +..+++-...+.|.+.+++.... .. ... ........++++|.+.
T Consensus 83 avd~~~---------~~ly~~d~~~~~I~~~~~~g~~~---------------~~--~~~----~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 83 AVDWIH---------SNIYWTDSVLGTVSVADTKGVKR---------------KT--LFR----ENGSKPRAIVVDPVHG 132 (316)
T ss_dssp EEETTT---------TEEEEEETTTTEEEEEETTSSSE---------------EE--EEE----CTTCCEEEEEEETTTT
T ss_pred EEeecC---------CeEEEEECCCCEEEEEeCCCCce---------------EE--EEE----CCCCCcceEEeCCCCC
Confidence 776432 23455555678888887652110 00 000 1124678999999888
Q ss_pred EEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEec---cCCCE
Q psy4869 1054 LLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLA---HEDSV 1127 (2435)
Q Consensus 1054 ~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~---h~~~V 1127 (2435)
.|+.+... +.|..++.+...........-.....|++++++..|+.+. ..+.|..+|++.. ....+.. .....
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P 211 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHP 211 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSE
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCc
Confidence 77777653 6788888765433222233345678999999877776665 4568999998743 3333321 22345
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1128 TGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1128 ~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
..+++. .+..+++-...+.|..++..+++....
T Consensus 212 ~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~ 244 (316)
T 1ijq_A 212 FSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNL 244 (316)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred EEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence 677775 344445555567888888766654443
No 324
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=0.0023 Score=82.66 Aligned_cols=243 Identities=9% Similarity=0.082 Sum_probs=143.5
Q ss_pred CCeeEEEEcc-CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC----eEEEEeCCCC
Q psy4869 406 GAVMDLKFST-DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC----TVKVWDPRKK 480 (2435)
Q Consensus 406 ~~V~~l~~s~-dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg----~I~vwD~~~~ 480 (2435)
.....|+|+| ++..|+.+...+.|+.+|++.++.. .+.........+++.+++..++++...++ .+.+++.. +
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence 3557889998 4566777766688999999766543 33334455677888898876777665332 34444432 2
Q ss_pred cce--EeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEEec-CCCCEEEEEEcCCCCEEEEE-ECCCcE
Q psy4869 481 NQA--VSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSVVQKLRG-HSDTVTGLSLSPDGSYILSN-AMDNTV 555 (2435)
Q Consensus 481 ~~~--~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~-h~~~V~~i~~spdg~~las~-s~Dg~I 555 (2435)
... ..+........++++| +|.++++-..++.|+.||...+........ .......|+|+|+|++|+.+ ...++|
T Consensus 215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 221 2222233456788999 666666656778999999987765322221 22356899999999965554 467889
Q ss_pred EEEEcCCCCCCCceEEEEeCc---cc---------ccccCeE-EEEEc--------CCCCEEEEecCCCeEEEEECCCCc
Q psy4869 556 RIWDIRPYVPGERCVKVMSGH---QH---------NFEKNLL-RCAWS--------VSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 556 ~lWdl~~~~~~~~~v~~~~~h---~~---------~~~~~i~-~v~~s--------pdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
..++..........+..+.+. .. .+ .... .+... ++|.++++-...+.|+.++ .+|+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~-~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARM-HAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBB-SSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEe-CCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 998875210000001122211 00 01 1122 34443 4466677766778899998 4565
Q ss_pred EEEEecC----C-------------CCCeeEEEEcCC-CCEEEEEECCCcEEEecC
Q psy4869 615 IAYKLPG----H-------------NGSVNDVQFHPK-EPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 615 ~~~~l~~----h-------------~~~V~~l~fspd-~~~Lasgs~Dg~I~vWd~ 652 (2435)
....... . -.....|++.|+ +.++++-.....|+..++
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 4433211 0 125788999985 555555445567776654
No 325
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.69 E-value=0.022 Score=70.67 Aligned_cols=273 Identities=10% Similarity=0.037 Sum_probs=149.6
Q ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeEEE-eeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce
Q psy4869 363 GEIFCSKYHPDGQYIASSGYDRQIFIWSVYGE--CENIGV-MSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR 439 (2435)
Q Consensus 363 ~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~--~~~~~~-l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~ 439 (2435)
..+.++.|.+++..+++ +..|.|... ...+ ...... .......+.+|.|.+ + .++.++.++.|.. ..+.|+.
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~~s-~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~-~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLMET-RDGGQTWEPRTLVLDHSDYRFNSVSFQG-N-EGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEEEE-SSTTSSCEECCCCCSCCCCEEEEEEEET-T-EEEEEEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEEEe-CCCCCCCeECCCCCCCCCccEEEEEecC-C-eEEEEECCCeEEE-ECCCCCC
Confidence 46889999888887775 457765333 2222 111110 112345788999975 3 4555566665544 3333444
Q ss_pred EEEEec---cCccccccCcccCCCeEEEEEeCCCeE-EEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEecCCeEEE
Q psy4869 440 IKKMKG---HSTFVNSCDPVRRGQLLIASGSDDCTV-KVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKM 515 (2435)
Q Consensus 440 v~~l~~---h~~~v~sv~~~~~~~~llasgs~Dg~I-~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~l 515 (2435)
...+.. +...+..+.+.+++ .+++.+ .++.| +-.|--..-..........+..+++.+++.+++++...+..+-
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~-~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S 188 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNG-SAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYST 188 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETT-EEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEE
T ss_pred ceECccccCCCCCeEEEEEECCC-CEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEE
Confidence 333321 22234455544444 444444 34543 3333211111111233456889999999988877654444444
Q ss_pred EE--CCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCC
Q psy4869 516 WD--LRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSG 593 (2435)
Q Consensus 516 wD--~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg 593 (2435)
.| -.+.+.+. ......+..+.+.+++..+ .++.+|.+++++... ++.-.............+..+.+.+++
T Consensus 189 ~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~----G~tW~~~~~~~~~~~~~~~~v~~~~~~ 261 (327)
T 2xbg_A 189 WEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN----SENWGELLSPLRRNSVGFLDLAYRTPN 261 (327)
T ss_dssp ECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE----EEEECCCBCTTSSCCSCEEEEEESSSS
T ss_pred eCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCC----CCeeEeccCCcccCCcceEEEEecCCC
Confidence 45 34555542 3455678999999998765 455678887764220 111111110000011247788899888
Q ss_pred CEEEEecCCCeEEEEECCCCcEEEEec---CCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 594 LYVTAGSADKCVYIWDTTTRRIAYKLP---GHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 594 ~~Lasgs~Dg~V~iwd~~s~~~~~~l~---~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
.+++++. ++.| ++....|+--..+. .+...+.++.|.+++ .++.++.+|.|.-++-
T Consensus 262 ~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 262 EVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred EEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 8777765 5656 34444454444343 234678899997544 5777788998876654
No 326
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.65 E-value=0.017 Score=68.15 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=112.1
Q ss_pred EEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEEccCCceeEEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4869 1077 SLYGHKLPVLSLDMSYDSTL-IATGSGDRTVKVWGLDYGDCHKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDAD 1154 (2435)
Q Consensus 1077 ~l~~h~~~V~sl~~spdg~~-L~Sgs~Dg~I~vWd~~t~~~~~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~ 1154 (2435)
.+.+-...+..|+|+|+++. +++...++.|...|.. ++.++.+.- -....-.|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 34455567999999997664 4557888999999998 888887743 23567889999888877776678899999987
Q ss_pred CcceeEEEEEEEe---ecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC---CceeeEee-------ccCCCEEEEE
Q psy4869 1155 NFERIVTLHFFIS---LYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY---GDCHKSLL-------AHEDSVTGVT 1221 (2435)
Q Consensus 1155 ~~~~~~~~~~~~~---~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t---~~~~~~~~-------~h~~~V~~i~ 1221 (2435)
....+........ ........-.++|++.+..|+++.......+|.+.. ...+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6554333332221 123456689999999998888877665556666541 11122221 1234678999
Q ss_pred EeeCCCEEEEEE-CCCcEEEEECC
Q psy4869 1222 FVPKTHYFFTTS-KDGRVKQWDAD 1244 (2435)
Q Consensus 1222 ~spd~~~lvsgs-~Dg~I~vwD~~ 1244 (2435)
++|....++.-+ ..+.|.++|..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~ 203 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV 203 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC
Confidence 999655555555 56667777754
No 327
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.64 E-value=7.1e-06 Score=118.03 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=18.9
Q ss_pred eecccchhhhheeeeeechhhhH-HHHHhHhhhh
Q psy4869 1625 KKFLFSSELEEVLLVLSLSQVTD-LLTHLSSLLD 1657 (2435)
Q Consensus 1625 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1657 (2435)
..++.++++-|.+-||=.+++-. |++-|...+.
T Consensus 1330 ~~rt~sNdI~ei~~vlGIEAAR~~Ii~Ei~~v~~ 1363 (1752)
T 3h0g_A 1330 ATRTYSNSFVEILQILGIEATRSALLKELRNVIE 1363 (1752)
T ss_dssp TTTCCCSCHHHHHHHSCHHHHHHHHHHHHHTTSC
T ss_pred cccCeeCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555677777777776664433 3455555544
No 328
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.61 E-value=0.0051 Score=79.39 Aligned_cols=243 Identities=7% Similarity=0.042 Sum_probs=143.8
Q ss_pred CCeeEEEEccC--CCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC---Ce-EEEEeCCC
Q psy4869 406 GAVMDLKFSTD--GCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD---CT-VKVWDPRK 479 (2435)
Q Consensus 406 ~~V~~l~~s~d--g~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D---g~-I~vwD~~~ 479 (2435)
.....|+|+++ +..|+.+...+.|+.+|..+++... +.........+++.+++. ++++.... .. +..++...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 34678999984 4566666555889999997776544 333445567888888887 55544321 12 33333322
Q ss_pred Ccc-eEeecCcccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEEE-e-cCCCCEEEEEEcCCCCEEEEEE-CCCc
Q psy4869 480 KNQ-AVSMNNTYQVTSVAFND-TAECVLTGGIDNDIKMWDLRTNSVVQKL-R-GHSDTVTGLSLSPDGSYILSNA-MDNT 554 (2435)
Q Consensus 480 ~~~-~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~V~lwD~~s~~~v~~l-~-~h~~~V~~i~~spdg~~las~s-~Dg~ 554 (2435)
+.. ...+........++++| +|.+.++-..++.|+.+|..+++....+ . +....-..|+|+|+|++|+.+. ..++
T Consensus 217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 111 01122233456788999 6665555556789999999888763333 2 1222335799999999665554 5788
Q ss_pred EEEEEcCCCCCCCceEEEEeCc---cc--------ccccCeEEEEE---------cCCCCEEEEecCCCeEEEEECCCCc
Q psy4869 555 VRIWDIRPYVPGERCVKVMSGH---QH--------NFEKNLLRCAW---------SVSGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 555 I~lWdl~~~~~~~~~v~~~~~h---~~--------~~~~~i~~v~~---------spdg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
|+.+++............+.+. .. ..-.....+++ .++|+++++-...+.|+.++. +|.
T Consensus 297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 9998875211000111122111 00 00123567888 778888888888899999985 564
Q ss_pred EEEEecCC------------------CCCeeEEEEc-CCCCEEEEEECCCcEEEecC
Q psy4869 615 IAYKLPGH------------------NGSVNDVQFH-PKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 615 ~~~~l~~h------------------~~~V~~l~fs-pd~~~Lasgs~Dg~I~vWd~ 652 (2435)
..... +. -.....|++. +++.++++-...+.|+..++
T Consensus 376 v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 376 VTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 43322 21 1236788888 55555555555667776654
No 329
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.61 E-value=0.036 Score=70.73 Aligned_cols=239 Identities=9% Similarity=-0.004 Sum_probs=150.9
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCCC----ceEEEEeccCccccccCccc
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPVR 457 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~~ 457 (2435)
...|+..++...... .+......+..|+|++.+..|+-+. ..+.|+.+++... .....+.........+++.+
T Consensus 91 ~~~I~~i~l~~~~~~--~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~ 168 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYT--SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 168 (400)
T ss_dssp TTEEEEECTTSCSCE--EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEET
T ss_pred cceeEEEccCCccee--EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEe
Confidence 467888887654221 2233456788999998666666554 5678999998652 22333332334455667766
Q ss_pred CCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCE
Q psy4869 458 RGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTV 534 (2435)
Q Consensus 458 ~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V 534 (2435)
.+..++++-...+.|.+.++........+. .......++++|.+.+|+.... .+.|...++........+...-...
T Consensus 169 ~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P 248 (400)
T 3p5b_L 169 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 248 (400)
T ss_dssp TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCE
T ss_pred cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCce
Confidence 666788887888899999988665444443 4445889999998777777653 3789999987554433334334567
Q ss_pred EEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC
Q psy4869 535 TGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR 613 (2435)
Q Consensus 535 ~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~ 613 (2435)
+.|++++++..|+.+. ..+.|..+|+.. ........... .......+++. .+.++.+-...+.|..+|..+|
T Consensus 249 ~glavd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~~--~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 249 NGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK--RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS----CCCEEEEECSS--TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEEeCCCEEEEEECCCCEEEEEeCCC----CccEEEEeCCC--CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence 9999999877777654 567899999863 11112222111 01234556663 3445555566788999998888
Q ss_pred cEEEEecCCCCCeeEEE
Q psy4869 614 RIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 614 ~~~~~l~~h~~~V~~l~ 630 (2435)
+.+..+.........|.
T Consensus 322 ~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 322 SDVNLLAENLLSPEDMV 338 (400)
T ss_dssp CCCEEEECSCSCEEEEE
T ss_pred CceEEEecCCCCCceEE
Confidence 77776654444445443
No 330
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.59 E-value=9e-06 Score=116.98 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=16.8
Q ss_pred eeeEEeccccccCcccceeeCcc--cchhH
Q psy4869 1711 EFLIQCQYCDFDSSMNLLSVSPY--ITNNL 1738 (2435)
Q Consensus 1711 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 1738 (2435)
|+.++..-|.|-.-|++-.|-+. .+||+
T Consensus 1309 ~~~l~teG~nL~~v~~~~gVD~~rt~sNdI 1338 (1752)
T 3h0g_A 1309 EWVLETDGINLTEAMTVEGVDATRTYSNSF 1338 (1752)
T ss_dssp EEEEECCSCCCSTTTSSSSCCTTTCCCSCH
T ss_pred eEEEEecccCHHHHhCcCCCccccCeeCCH
Confidence 56677777777776666544443 34554
No 331
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.56 E-value=0.13 Score=65.61 Aligned_cols=251 Identities=9% Similarity=-0.088 Sum_probs=148.6
Q ss_pred cEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccCCceeecccccccceeEEEEe
Q psy4869 898 LALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGAGEILEDIPAHSQELWSVAML 976 (2435)
Q Consensus 898 ~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~sg~~v~~~~~h~~~V~sv~~s 976 (2435)
.+|.......|+..++........+.....+.+|+|.+.++.|.... ..+.|..+++..+....
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~--------------- 148 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------------- 148 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C---------------
T ss_pred ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC---------------
Confidence 35666667889999998877777677667788899998666555443 45566655543211000
Q ss_pred cCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEE
Q psy4869 977 PDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLA 1056 (2435)
Q Consensus 977 ~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~La 1056 (2435)
....+.. .....+..+++++.+..|+
T Consensus 149 ----------------------~~~~~~~--------------------------------~~~~~p~glavD~~~~~lY 174 (400)
T 3p5b_L 149 ----------------------SYDTVIS--------------------------------RDIQAPDGLAVDWIHSNIY 174 (400)
T ss_dssp ----------------------CCEEEEC--------------------------------SSCSCEEEEEEETTTTEEE
T ss_pred ----------------------cceEEEe--------------------------------CCCCCcccEEEEecCCceE
Confidence 0000000 0012355677777555555
Q ss_pred EEEC-CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEEccCCceeEEEeccCCCEEEEEEc
Q psy4869 1057 VSLL-DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG--DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFV 1133 (2435)
Q Consensus 1057 vg~~-dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~--Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fs 1133 (2435)
.... .+.|.+.+++.......+.........|++.|.+..|+.... .+.|...+++.......+...-.....|+++
T Consensus 175 ~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd 254 (400)
T 3p5b_L 175 WTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD 254 (400)
T ss_dssp EEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred EEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEE
Confidence 5543 467777777765544444444455789999987666665553 3678888876443333333333567899999
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeec
Q psy4869 1134 PKTHYFFTTS-KDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLA 1212 (2435)
Q Consensus 1134 p~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~ 1212 (2435)
+++..|+.+. ..+.|..+|+........+. ..........+++. .+..+++-...+.|..+|..+|+.+..+..
T Consensus 255 ~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 255 LLSGRLYWVDSKLHSISSIDVNGGNRKTILE----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCCCEEEEE----CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred eCCCEEEEEECCCCEEEEEeCCCCccEEEEe----CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 8777777665 45789999987543322221 11223345567764 334445555667899999888877766654
Q ss_pred cCCCEEEEEE
Q psy4869 1213 HEDSVTGVTF 1222 (2435)
Q Consensus 1213 h~~~V~~i~~ 1222 (2435)
......+|..
T Consensus 330 ~~~~p~~i~v 339 (400)
T 3p5b_L 330 NLLSPEDMVL 339 (400)
T ss_dssp SCSCEEEEEE
T ss_pred CCCCCceEEE
Confidence 4444444443
No 332
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.52 E-value=0.071 Score=65.97 Aligned_cols=271 Identities=9% Similarity=-0.006 Sum_probs=149.0
Q ss_pred CCceEEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEe-----CCCeEEEEEEecCCCEEEEEeCCCeEEEEEccCCc-
Q psy4869 885 HSEVRALAFSSDNLALVSACASQVKIWNRPSLSCLRTID-----TGSYALSVCFVPGDRHVLVGTKDGRLLIVDIGAGE- 958 (2435)
Q Consensus 885 ~~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~-----~~~~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~- 958 (2435)
...+.+|+|.+++..+++|..+.| +...+.++.-..+. ....+.+|.|.+ ++.+++ +..|.|+. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEE-ESSTTSS
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEE-ECCCCCC
Confidence 347999999888888888877754 44444443222221 244678899976 444444 45665543 333344
Q ss_pred --eeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccc
Q psy4869 959 --ILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRT 1036 (2435)
Q Consensus 959 --~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 1036 (2435)
.+.....+...+..+.+.+++ ..++ ++.+|.|.. ..+.+. .. ... .
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~----------~~~~-~~~~g~v~~-S~DgG~-tW----------------~~~---~ 158 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNG----------SAEM-ITNVGAIYR-TKDSGK-NW----------------QAL---V 158 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETT----------EEEE-EETTCCEEE-ESSTTS-SE----------------EEE---E
T ss_pred ceECccccCCCCCeEEEEEECCC----------CEEE-EeCCccEEE-EcCCCC-CC----------------EEe---e
Confidence 221111223456777776554 3344 445564422 112111 00 000 0
Q ss_pred cccCCCEEEEEEcCCCCEEEEEECCCcEEE-EE--cCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC
Q psy4869 1037 LKLEEQVLCARVSPDSKLLAVSLLDTTVKI-FF--LDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1113 (2435)
Q Consensus 1037 ~~~~~~v~~l~~spdg~~Lavg~~dg~V~i-~d--~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t 1113 (2435)
......+..+.+.+++.+++++. +|.+.. .| -.+++.+. ......+..+.+.+++.++ .++.+|.+++.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 159 QEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDN 234 (327)
T ss_dssp CSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTE
T ss_pred cCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCC
Confidence 11234678899999998887775 444443 33 23445442 2355678999999988755 456788887764333
Q ss_pred CceeEEEe-c---cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEE
Q psy4869 1114 GDCHKSLL-A---HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIAT 1189 (2435)
Q Consensus 1114 ~~~~~~l~-~---h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 1189 (2435)
|+.-..+. . +...+..+.+.+++..++++ .++.| ++..+.++....+. ........+.++.|.++ ..+++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~---~~~~~~~~~~~v~~~~~-~~~~~ 308 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDV---DVKKVPSNFYKILFFSP-DQGFI 308 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECG---GGTTSSSCCCEEEEEET-TEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcC---ccCCCCCCeEEEEEECC-CceEE
Confidence 33222222 1 23458899999877655554 46666 34444443332221 00012356788888744 45667
Q ss_pred EeCCCcEEEEEc
Q psy4869 1190 GSGDRTVKVWGL 1201 (2435)
Q Consensus 1190 gs~Dg~V~iwd~ 1201 (2435)
++.+|.|..++-
T Consensus 309 ~G~~G~i~~~~~ 320 (327)
T 2xbg_A 309 LGQKGILLRYVT 320 (327)
T ss_dssp ECSTTEEEEECC
T ss_pred EcCCceEEEEcC
Confidence 778888776654
No 333
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.51 E-value=0.01 Score=70.18 Aligned_cols=206 Identities=9% Similarity=0.113 Sum_probs=135.2
Q ss_pred EEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeec--CcccEEEEEECCCCCEEEEEecCCeEEEEECC
Q psy4869 442 KMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLR 519 (2435)
Q Consensus 442 ~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~ 519 (2435)
.+.+-...+..+++.|++..++++...++.|...|.. ++....+. .......+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3445555688889999888888888889999999998 77666653 33568889999999877776677899999886
Q ss_pred CCcE---EEEEe------cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCc---ccccccCeEEE
Q psy4869 520 TNSV---VQKLR------GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGH---QHNFEKNLLRC 587 (2435)
Q Consensus 520 s~~~---v~~l~------~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h---~~~~~~~i~~v 587 (2435)
.... +.... .+.....+|+|+|+++.|+++.......||.++. ......+...... .......+..+
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNG-LLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEES-TTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcc-cccCCceeeecchhhccccccCCceeE
Confidence 5442 23332 1344568999999998888877665666666542 1112222222110 00112345788
Q ss_pred EEcCCC-CEEEEecCCCeEEEEECCCCcEEEEecCCC---------CCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 588 AWSVSG-LYVTAGSADKCVYIWDTTTRRIAYKLPGHN---------GSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 588 ~~spdg-~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h~---------~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
++.|.. ++++.....+.|.++|.. |+++..+.-.. .....|+|.++|++.++ ++-..++.+.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT 250 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence 898855 455555567788899965 55655443221 25689999999984444 6666666554
No 334
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=0.013 Score=75.50 Aligned_cols=236 Identities=8% Similarity=0.052 Sum_probs=141.6
Q ss_pred EEEEECC-CCCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC-C----eEEEEECCCCce
Q psy4869 366 FCSKYHP-DGQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD-Q----TLAVWDLEKGQR 439 (2435)
Q Consensus 366 ~~l~fsp-dg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D-g----~I~vwd~~tg~~ 439 (2435)
..|+++| ++..|+.+...+.|+.+|...... ..+.........|+|++++++|+.+... + .+.+++. .+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v--~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV--STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEE--EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEE--EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 5678888 455666666558899999876432 2333345678899999999977766542 1 3444453 3322
Q ss_pred E--EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe--ecCcccEEEEEECCCCCEEEEEe-cCCeEE
Q psy4869 440 I--KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS--MNNTYQVTSVAFNDTAECVLTGG-IDNDIK 514 (2435)
Q Consensus 440 v--~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~--~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~ 514 (2435)
. ..+.. ......+++.|.+..++++-..++.|..+|...+..... .........++|+|+|++|++.. ..+.|+
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~ 295 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence 1 22321 233566777885556777777788999999986654222 22334578999999999666654 568899
Q ss_pred EEECCC--CcE--EEEEecC------C---------CCEE-EEEEc--------CCCCEEEEEECCCcEEEEEcCCCCCC
Q psy4869 515 MWDLRT--NSV--VQKLRGH------S---------DTVT-GLSLS--------PDGSYILSNAMDNTVRIWDIRPYVPG 566 (2435)
Q Consensus 515 lwD~~s--~~~--v~~l~~h------~---------~~V~-~i~~s--------pdg~~las~s~Dg~I~lWdl~~~~~~ 566 (2435)
.+|... ++. +..+.+. . ..-. .+... ++|.++++-...+.|+.++..
T Consensus 296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~----- 370 (430)
T 3tc9_A 296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ----- 370 (430)
T ss_dssp EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-----
T ss_pred EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-----
Confidence 987653 322 1222211 0 1123 45553 346666665567788888732
Q ss_pred CceEEEEeCc-----cc---c------cccCeEEEEEcC-CCCEEEEecCCCeEEEEECC
Q psy4869 567 ERCVKVMSGH-----QH---N------FEKNLLRCAWSV-SGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 567 ~~~v~~~~~h-----~~---~------~~~~i~~v~~sp-dg~~Lasgs~Dg~V~iwd~~ 611 (2435)
+. +..+.+. .. . .-.....+++.+ +|.++++-..++.|+.++++
T Consensus 371 G~-v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GR-VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SE-EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred Cc-EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 22 2222221 00 0 012467889998 46666666667788877753
No 335
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.48 E-value=0.021 Score=70.38 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=142.8
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEE-eCCCeEEEEECCCCce-EEEEeccCccccccCcccCCC
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTC-STDQTLAVWDLEKGQR-IKKMKGHSTFVNSCDPVRRGQ 460 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~-s~Dg~I~vwd~~tg~~-v~~l~~h~~~v~sv~~~~~~~ 460 (2435)
...|+..++.+..............+..++|++.+..|+-+ ...+.|+.+++..+.. ...+.........+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 45788888765421111111112356789999865555544 4567899999876532 122222223455677776677
Q ss_pred eEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCCEEEE
Q psy4869 461 LLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDTVTGL 537 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~V~~i 537 (2435)
.++++-...+.|.++++......... ........++++|.+.+|+.... .+.|..+++........+...-..-+.|
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pngl 171 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL 171 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence 78888777889999998765433333 34456789999998777777663 5789999886433322223333456899
Q ss_pred EEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcEE
Q psy4869 538 SLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRIA 616 (2435)
Q Consensus 538 ~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~ 616 (2435)
+|+|++..|+.+. ..+.|..+|+.. ........+. ......+++. .+.++.+-...+.|..+|..+|+..
T Consensus 172 avd~~~~~lY~aD~~~~~I~~~d~dG----~~~~~~~~~~----~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 172 TLDYEEQKLYWADAKLNFIHKSNLDG----TNRQAVVKGS----LPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS----CSCEEEECSC----CSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEeccCCEEEEEECCCCEEEEEcCCC----CceEEEecCC----CCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCce
Confidence 9999777666554 578899999863 1111112211 1234566664 3455555666788999998888766
Q ss_pred EEecC
Q psy4869 617 YKLPG 621 (2435)
Q Consensus 617 ~~l~~ 621 (2435)
..+..
T Consensus 243 ~~i~~ 247 (318)
T 3sov_A 243 REIHS 247 (318)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 65543
No 336
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.42 E-value=0.026 Score=72.78 Aligned_cols=236 Identities=9% Similarity=0.092 Sum_probs=141.8
Q ss_pred EEEEECCC--CCEEEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC----C-eEEEEECCCCc
Q psy4869 366 FCSKYHPD--GQYIASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD----Q-TLAVWDLEKGQ 438 (2435)
Q Consensus 366 ~~l~fspd--g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D----g-~I~vwd~~tg~ 438 (2435)
..++|+|+ +..|+.+...+.|+.+|..+... ..+.........|+|+++|+ |+.+... . .+...+...+.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v--~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV--DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEE--EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEE--EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 46889984 44555555558999999855432 23334456789999999999 5554432 1 23344433222
Q ss_pred e-EEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEee---cCcccEEEEEECCCCCEEEEEe-cCCeE
Q psy4869 439 R-IKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSM---NNTYQVTSVAFNDTAECVLTGG-IDNDI 513 (2435)
Q Consensus 439 ~-v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~---~~~~~v~sv~~sp~g~~l~sgs-~dg~V 513 (2435)
. ...+. .......+++.+.+..++++-..++.|+.+|..++.....+ ........++|+|+|++|+++. ..+.|
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I 297 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCI 297 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEE
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEE
Confidence 1 11121 23345667778855566666667889999999866552222 1222334799999999766665 46889
Q ss_pred EEEECC--CCcE--EEEEecC---------------CCCEEEEEE---------cCCCCEEEEEECCCcEEEEEcCCCCC
Q psy4869 514 KMWDLR--TNSV--VQKLRGH---------------SDTVTGLSL---------SPDGSYILSNAMDNTVRIWDIRPYVP 565 (2435)
Q Consensus 514 ~lwD~~--s~~~--v~~l~~h---------------~~~V~~i~~---------spdg~~las~s~Dg~I~lWdl~~~~~ 565 (2435)
+.+|.. +++. ...+.+. -.....+++ .++|+++++-...++|+.++..
T Consensus 298 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~---- 373 (433)
T 4hw6_A 298 YRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE---- 373 (433)
T ss_dssp EEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT----
T ss_pred EEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC----
Confidence 998865 3321 1222221 123577999 7777777777778889998843
Q ss_pred CCceEEEEeCccc--------c------cccCeEEEEEc-CCCCEEEEecCCCeEEEEECC
Q psy4869 566 GERCVKVMSGHQH--------N------FEKNLLRCAWS-VSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 566 ~~~~v~~~~~h~~--------~------~~~~i~~v~~s-pdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
+ .+.++.+... . .-.....+++. ++|.++++=..++.|+.++++
T Consensus 374 -G-~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 -G-RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -S-EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -C-CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 2 2333332210 0 01235678888 677766666667778777654
No 337
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.013 Score=75.79 Aligned_cols=242 Identities=11% Similarity=0.081 Sum_probs=143.4
Q ss_pred CeeEEEEcc-CCCEEEEEeC-CCeEEEEECCCCceEEEEeccC---ccccccCc-------ccCCCeEEEEEeCCC----
Q psy4869 407 AVMDLKFST-DGCHIFTCST-DQTLAVWDLEKGQRIKKMKGHS---TFVNSCDP-------VRRGQLLIASGSDDC---- 470 (2435)
Q Consensus 407 ~V~~l~~s~-dg~~L~s~s~-Dg~I~vwd~~tg~~v~~l~~h~---~~v~sv~~-------~~~~~~llasgs~Dg---- 470 (2435)
....|+|+| +...|+.+.. .+.|++.|++++.....+.... .....++| .+++..++++-..++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 4555665554 4679999988776655443322 24567778 888876776655542
Q ss_pred --eEEEEeCCC-Ccce-----EeecCcccEEEEEECCCCCEEE-EEecCCeEEEEECC-------CCcE-----------
Q psy4869 471 --TVKVWDPRK-KNQA-----VSMNNTYQVTSVAFNDTAECVL-TGGIDNDIKMWDLR-------TNSV----------- 523 (2435)
Q Consensus 471 --~I~vwD~~~-~~~~-----~~~~~~~~v~sv~~sp~g~~l~-sgs~dg~V~lwD~~-------s~~~----------- 523 (2435)
.|.+++... +... ..+..-.....++++|++..|+ +-..++.|+.||+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366776443 1221 1222222456788999555544 55567889999987 5543
Q ss_pred EEEE-e-cCCCCEEEEEEcCCCCEEEEE-ECCCcEEEEEcCCCCCCCce--EEEEeCc---c---------cccccCeE-
Q psy4869 524 VQKL-R-GHSDTVTGLSLSPDGSYILSN-AMDNTVRIWDIRPYVPGERC--VKVMSGH---Q---------HNFEKNLL- 585 (2435)
Q Consensus 524 v~~l-~-~h~~~V~~i~~spdg~~las~-s~Dg~I~lWdl~~~~~~~~~--v~~~~~h---~---------~~~~~~i~- 585 (2435)
...+ . +....-+.|+|+|+|+.|+.+ +...+|+.+|.... .... ...+-+. . ..+ ....
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~--~~~~~~~~~~aG~~g~~G~~DG~~~~a~f-~~P~~ 376 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEI--KKEFITPYNFVGGYKQSGYRDDVGTEARM-NNPCQ 376 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETT--TTEECCCEEEEEBTTBCCCBCCBGGGCBC-SSEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCC--cceecccEEecCCCCCCcccCCccccccc-CCCeE
Confidence 2222 1 223456899999999965554 46788888776421 1110 0122221 0 011 1223
Q ss_pred EEEEc-------CCCCEEEEecCCCeEEEEECCCCcEEEEecCC------------------------CCCeeEEEEcCC
Q psy4869 586 RCAWS-------VSGLYVTAGSADKCVYIWDTTTRRIAYKLPGH------------------------NGSVNDVQFHPK 634 (2435)
Q Consensus 586 ~v~~s-------pdg~~Lasgs~Dg~V~iwd~~s~~~~~~l~~h------------------------~~~V~~l~fspd 634 (2435)
.+... .+|.++++=..+.+|+.++ .+|.. ..+.|. -.....|++.++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 44554 5677777777888999999 45643 333221 123678888886
Q ss_pred -CCEEEEEECCCcEEEecCC
Q psy4869 635 -EPIIMSASSDKTIYLGESP 653 (2435)
Q Consensus 635 -~~~Lasgs~Dg~I~vWd~~ 653 (2435)
+.++++=.....|+.++++
T Consensus 455 ~g~lyVaD~~N~rIrki~~~ 474 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISME 474 (496)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 6555555566788877775
No 338
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.36 E-value=0.0024 Score=88.81 Aligned_cols=197 Identities=12% Similarity=0.108 Sum_probs=114.9
Q ss_pred cEEEEEEC-CCCCEEEEEec-CC----eEEEEECCCC-cEEE-EEecCCCCEEEEEEcCCCCEEEEEECC-----CcEEE
Q psy4869 491 QVTSVAFN-DTAECVLTGGI-DN----DIKMWDLRTN-SVVQ-KLRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRI 557 (2435)
Q Consensus 491 ~v~sv~~s-p~g~~l~sgs~-dg----~V~lwD~~s~-~~v~-~l~~h~~~V~~i~~spdg~~las~s~D-----g~I~l 557 (2435)
.+...+|+ |||++|+.+.. +| .|+++|+.++ +.+. .+.. ....+.|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 46678999 99998886543 23 4999999998 6321 1111 12467899999988877765 25777
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEec---CCCeEEEEECCCC--cE--EEEecCCCCCeeEEE
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGS---ADKCVYIWDTTTR--RI--AYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs---~Dg~V~iwd~~s~--~~--~~~l~~h~~~V~~l~ 630 (2435)
+++.... ......+.... ......+.|+|||++|+..+ ....|+++|+.++ +. .....+..+....+.
T Consensus 252 ~~lgt~~--~~~~lv~~~~~---~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQ--SEDVCLYEEHN---PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EETTSCG--GGCEEEEECCC---TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred EECCCCc--hhcEEEEecCC---CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 7776421 12223332211 12356789999999988765 3457889999876 33 233334455666777
Q ss_pred EcCCCCEEEEEECC--C--cEEEecCCCccccCcc-eeecCce-eeEEEecCCCCeEEEEecCCceEEeeeec
Q psy4869 631 FHPKEPIIMSASSD--K--TIYLGESPLHCDKAGS-ILRSGKG-RVHTMVNDKHRQILCCHGNDNVVDLFYFC 697 (2435)
Q Consensus 631 fspd~~~Lasgs~D--g--~I~vWd~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 697 (2435)
|+..+.+++....+ + .|+.++++.. ..+.. ++..... .+..+... .+.+++....+....++.+.
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 66544455555444 3 4555555421 22233 3333222 22333222 45666666666666666654
No 339
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.28 E-value=0.087 Score=72.66 Aligned_cols=231 Identities=8% Similarity=-0.004 Sum_probs=145.0
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEE-EeCCCeEEEEECCCC----ceEEEEeccCccccccCcc
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFT-CSTDQTLAVWDLEKG----QRIKKMKGHSTFVNSCDPV 456 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s-~s~Dg~I~vwd~~tg----~~v~~l~~h~~~v~sv~~~ 456 (2435)
....|+..++..... ..+......+..|+|++....|+. -...+.|+.+++... .....+.........+++.
T Consensus 402 n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 345677777764322 223334567789999985555554 445678999998652 2233333344456677777
Q ss_pred cCCCeEEEEEeCCCeEEEEeCCCCcceEee-cCcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCC
Q psy4869 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSM-NNTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~~~~~~~~~~-~~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+.+..++++-...+.|.+.++........+ ........|+++|.+.+|+.... .+.|...++........+...-..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~ 559 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 559 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC
Confidence 777788888888899999999865543333 24456889999998777777653 378999998755444444444457
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYILSNA-MDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~las~s-~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.++|++++.+.+|+.+. ....|...|+.. ............ . .....+++. .++++++-...+.|...|..+
T Consensus 560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG----~~~~~v~~~~~~-l-~~P~glav~-~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 560 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEKR-L-AHPFSLAVF-EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS----CSCEEEEECTTT-T-SSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred ceEEEEecCCCeEEEEeCCCCcEEEEecCC----CceEEEecCCCc-c-CCCCEEEEe-CCEEEEEECCCCEEEEEeCCC
Confidence 89999998777766654 467888888862 222222222110 1 123455553 234444555667888888888
Q ss_pred CcEEEEecC
Q psy4869 613 RRIAYKLPG 621 (2435)
Q Consensus 613 ~~~~~~l~~ 621 (2435)
|+.+..+..
T Consensus 633 G~~~~~l~~ 641 (791)
T 3m0c_C 633 GSDVNLLAE 641 (791)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEeec
Confidence 766665543
No 340
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.25 E-value=0.11 Score=63.88 Aligned_cols=233 Identities=11% Similarity=0.012 Sum_probs=139.2
Q ss_pred EEEEecCCcEEEEeCCCCc--eeEEEeCCCeEEEEEEecCCCEEEE-EeCCCeEEEEEccCCceee-cccccccceeEEE
Q psy4869 899 ALVSACASQVKIWNRPSLS--CLRTIDTGSYALSVCFVPGDRHVLV-GTKDGRLLIVDIGAGEILE-DIPAHSQELWSVA 974 (2435)
Q Consensus 899 ~la~g~~~~V~Iwd~~~~~--~~~~l~~~~~v~~vafspdg~~Lav-g~~dg~V~vwd~~sg~~v~-~~~~h~~~V~sv~ 974 (2435)
+|..+....|+.+|+.... ....+..-..+.+++|.+.++.|.. -...+.|..+++..+.... .+.........++
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla 85 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA 85 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence 4555556788888888764 2233333345668999986666654 4467899999987663211 1111122345666
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
+.+.+ +..+++-...+.|.+.+++.... ..+ ..........++++|.+..
T Consensus 86 vd~~~---------g~ly~~d~~~~~I~~~~~dG~~~---------------~~l------~~~~~~~P~giavdp~~g~ 135 (318)
T 3sov_A 86 CDWLG---------EKLYWTDSETNRIEVSNLDGSLR---------------KVL------FWQELDQPRAIALDPSSGF 135 (318)
T ss_dssp EETTT---------TEEEEEETTTTEEEEEETTSCSC---------------EEE------ECSSCSSEEEEEEEGGGTE
T ss_pred EEcCC---------CeEEEEECCCCEEEEEECCCCcE---------------EEE------EeCCCCCccEEEEeCCCCE
Confidence 66432 23555555667888888753110 000 0012245789999998888
Q ss_pred EEEEEC--CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEEccCCceeEEEeccCCCEEEEE
Q psy4869 1055 LAVSLL--DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGS-GDRTVKVWGLDYGDCHKSLLAHEDSVTGVT 1131 (2435)
Q Consensus 1055 Lavg~~--dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs-~Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~ 1131 (2435)
|+.... .+.|..++.+.......+...-..-..|+|++++..|+.+. ..+.|..+|++.......+.........++
T Consensus 136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla 215 (318)
T 3sov_A 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT 215 (318)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE
T ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 888774 47788888765333222333334568999999777666665 467899999864332222232334556777
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCcceeEEE
Q psy4869 1132 FVPKTHYFFTTSKDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1132 fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
+. .+..+++-...+.|..++..+++....+
T Consensus 216 v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 216 LF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred Ee-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 75 3344445455678888888766654443
No 341
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.22 E-value=0.06 Score=69.52 Aligned_cols=247 Identities=8% Similarity=0.028 Sum_probs=148.1
Q ss_pred cEEEEEECCC-C-CEEEEEeCCCeEEEEecCCceeeEEEeeC--CCCCeeEEEE-------ccCCCEEEEEeCCC-----
Q psy4869 364 EIFCSKYHPD-G-QYIASSGYDRQIFIWSVYGECENIGVMSG--HTGAVMDLKF-------STDGCHIFTCSTDQ----- 427 (2435)
Q Consensus 364 ~V~~l~fspd-g-~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~--h~~~V~~l~~-------s~dg~~L~s~s~Dg----- 427 (2435)
.-..|+|+|. + +++++....+.|++.|..........-.+ .......|+| +++++.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3567899983 4 44444444567888888764332211111 2235899999 99999777776543
Q ss_pred --eEEEEECCC-CceE-----EEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC-------CCcc----------
Q psy4869 428 --TLAVWDLEK-GQRI-----KKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR-------KKNQ---------- 482 (2435)
Q Consensus 428 --~I~vwd~~t-g~~v-----~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~-------~~~~---------- 482 (2435)
.|.+++... |... ..+.. ......++..|.+..++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 366776444 2221 22221 12345677788777888888889999999987 4443
Q ss_pred ----eEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEEC--CCCcE--EEEEecC---C------------CCEE-EE
Q psy4869 483 ----AVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDL--RTNSV--VQKLRGH---S------------DTVT-GL 537 (2435)
Q Consensus 483 ----~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~--~s~~~--v~~l~~h---~------------~~V~-~i 537 (2435)
+...........++|+|+|++|+.+. ....|+.+|. ..+.. ...+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 12223344568999999999766665 5678888554 44432 1222221 1 1234 45
Q ss_pred EEc-------CCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCccc--------------c------cccCeEEEEEc
Q psy4869 538 SLS-------PDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQH--------------N------FEKNLLRCAWS 590 (2435)
Q Consensus 538 ~~s-------pdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~--------------~------~~~~i~~v~~s 590 (2435)
... ++|.++++=....+|+.++.. + .+.++-+... . .-.....+++.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-----G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-----G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEECTT-----C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEeCC-----C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 554 566666666678899998843 2 3444433210 0 01235678888
Q ss_pred CC-CCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 591 VS-GLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 591 pd-g~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
++ |.++++=..+..|+.++++....+.
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 86 7777777777888888876554443
No 342
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.18 E-value=0.029 Score=68.53 Aligned_cols=198 Identities=14% Similarity=0.283 Sum_probs=127.8
Q ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccC----CC---eEEEEEeC--CCeEEEEeCC--CCcceE
Q psy4869 416 DGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRR----GQ---LLIASGSD--DCTVKVWDPR--KKNQAV 484 (2435)
Q Consensus 416 dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~----~~---~llasgs~--Dg~I~vwD~~--~~~~~~ 484 (2435)
...+++....++-+.+||+ +|+.+..+.. ..++.++..+. +. ..+++.-. +++|.+|++. ++. +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 3456676777889999999 8999988864 34566665552 11 12344444 6899999663 332 33
Q ss_pred eec-------Cc-ccEEEEEE--CCC-CC-EEEEEecCCeEEEEECC-------CCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 485 SMN-------NT-YQVTSVAF--NDT-AE-CVLTGGIDNDIKMWDLR-------TNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 485 ~~~-------~~-~~v~sv~~--sp~-g~-~l~sgs~dg~V~lwD~~-------s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
... .. ..+..+++ +|. ++ ++++...+|.+..|++. +.+.++++... +.+-.|...+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEEEcCCCCe
Confidence 331 11 55667777 774 44 68888889999999883 34667777643 57889999999999
Q ss_pred EEEEECCCcEEEEEcCCCCC-CCceEEEEeCcccccccCeEEEEE--cCCCC-EEEEec-CCCeEEEEECC-CCcEEEEe
Q psy4869 546 ILSNAMDNTVRIWDIRPYVP-GERCVKVMSGHQHNFEKNLLRCAW--SVSGL-YVTAGS-ADKCVYIWDTT-TRRIAYKL 619 (2435)
Q Consensus 546 las~s~Dg~I~lWdl~~~~~-~~~~v~~~~~h~~~~~~~i~~v~~--spdg~-~Lasgs-~Dg~V~iwd~~-s~~~~~~l 619 (2435)
|+.+-.|.-|-.+|.+.... ..+.+..+... .....+..+++ .++|+ ||++.+ .++.+.+||.+ +.+.+..+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g--~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGR--HLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSS--SBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCC--ccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 99999986655555443221 12344333211 12224566666 56666 666655 67899999996 66776665
Q ss_pred c
Q psy4869 620 P 620 (2435)
Q Consensus 620 ~ 620 (2435)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 343
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.12 E-value=0.0096 Score=82.80 Aligned_cols=188 Identities=12% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEEeC-CCCcEEEEe--cCC----cEEEEEcCcc-ccccccCCccccceecCCCccceEEEeecCCCCeEEEEEcC---
Q psy4869 28 FVTLKN-QEGRFLATG--ASE----DVIIWDLRLA-EKALLLPGEKHEALLLPGEKHEVCQLSPNHDSSQLAVAYTN--- 96 (2435)
Q Consensus 28 ~~~~~~-~~g~~lasg--~~g----~V~IwD~~~~-~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~d~~~lav~~~~--- 96 (2435)
....|| |||++||-+ .+| .|.++|+.++ +... . .+.+ ....+.|+|||+.|+....+
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----~----~~~~---~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----D----KVSG---TNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----C----CEEE---ECSCCEECSSTTEEEEEEECTTC
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----c----cccC---ceeeEEEecCCCEEEEEEECCCC
Confidence 345779 999999975 233 3999999877 5211 0 0111 12358899999988877664
Q ss_pred --CeEEEEECCCCC--eEEEecC-CCCCEEEEEEcCCCCEEEEEeC---CCCEEEEEccCCe-eE--EEE-ecCCCcEEE
Q psy4869 97 --GSLKTFSLDTTD--VISTFTG-HKSAITVIQYDPLGHRLATGSK---DTDIVLWDVVAEC-GL--HRL-SGHKGVITD 164 (2435)
Q Consensus 97 --G~i~i~d~~~~~--~~~~l~g-H~~~V~~l~f~p~g~~laSgs~---Dg~I~iWd~~~~~-~~--~~l-~gH~~~V~~ 164 (2435)
..|..+++.+++ .+..+.+ +......+.|+|||++|+..+. ...|.++|+.+.. .. ..+ .+..+...+
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 258888888764 2333332 3345678999999998876553 3458888987652 12 333 345566677
Q ss_pred EEEeecCCCcEEEEEeCC--C--cEEEEeccCCccccc-cccccc--eEEEEEEEeCCC-eEEEeeCCCcEEEEE
Q psy4869 165 IRFMSQPGHHFVVSSAKD--T--FVKIWDADTGDCFKT-MAAHLT--EVWGVCVMREDS-YLISGSNDAELKVWN 231 (2435)
Q Consensus 165 v~~~~~~~~~~l~S~s~D--g--~I~iWd~~tg~~~~~-~~~h~~--~V~~l~~~p~~~-~l~s~s~Dg~v~vwd 231 (2435)
+.|+ .++.+++....| + .|.++|+.++..... +..|.. .+..+.+ .+. ++++...|+..++|-
T Consensus 325 ~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 325 VQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEE
T ss_pred Eeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEE
Confidence 7764 355566666555 3 455566655323334 333433 3344444 444 455777778655553
No 344
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.11 E-value=0.065 Score=65.50 Aligned_cols=199 Identities=15% Similarity=0.243 Sum_probs=128.8
Q ss_pred CCCEEEEEECCCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCC----CC---EEEEEEC---CCcEEEEEcc--CCceeE
Q psy4869 1051 DSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYD----ST---LIATGSG---DRTVKVWGLD--YGDCHK 1118 (2435)
Q Consensus 1051 dg~~Lavg~~dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spd----g~---~L~Sgs~---Dg~I~vWd~~--t~~~~~ 1118 (2435)
...+++.....+-+.+||+ +++.+..+.. +.++.++.-|+ |+ ++++... +++|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 3455666666788999999 7788888764 56777777663 21 3344444 5789999773 33 344
Q ss_pred EEec------cC-CCEEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCCc-ceeEEEEEEEeecccccCeEEEEEeCCCCE
Q psy4869 1119 SLLA------HE-DSVTGVTF--VPK-TH-YFFTTSKDGRVKQWDADNF-ERIVTLHFFISLYGHKLPVLSLDMSYDSTL 1186 (2435)
Q Consensus 1119 ~l~~------h~-~~V~~v~f--sp~-~~-~l~s~s~Dg~V~iwD~~~~-~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 1186 (2435)
.+.. .. ..+..+++ ++. +. ++++...++.+..|++... ......+..+.+ ...+.+-.|...+...+
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f-~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF-KMNSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE-ECSSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe-cCCCCcceEEEcCCCCe
Confidence 4421 12 56677888 664 43 6888889999999998432 111111222222 23457888899988899
Q ss_pred EEEEeCCCcEEEEEcc-----CCceeeEee-cc-CCCEEEEEEee--CCC-EEEEEE-CCCcEEEEECC-CCceEEEEee
Q psy4869 1187 IATGSGDRTVKVWGLD-----YGDCHKSLL-AH-EDSVTGVTFVP--KTH-YFFTTS-KDGRVKQWDAD-NFERIVTLHF 1254 (2435)
Q Consensus 1187 l~sgs~Dg~V~iwd~~-----t~~~~~~~~-~h-~~~V~~i~~sp--d~~-~lvsgs-~Dg~I~vwD~~-~~~~v~~~~~ 1254 (2435)
|+.+-.+..|..++.+ +++.+..+. ++ ...+..|.+.+ +++ +|++++ .+.++.+||.. ..+.+..+.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~I 273 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRI 273 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEe
Confidence 9999998777777754 244454442 22 24788898854 445 677777 67899999997 5555555543
No 345
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.10 E-value=0.069 Score=64.74 Aligned_cols=203 Identities=10% Similarity=0.054 Sum_probs=130.2
Q ss_pred EEEEEEcCCCCEEEEEE-CCCcEEEEEcCCCeEEEE-Eec----CC--cCEEEEEE---cCCCCEEEEEE----------
Q psy4869 1043 VLCARVSPDSKLLAVSL-LDTTVKIFFLDTFKFFIS-LYG----HK--LPVLSLDM---SYDSTLIATGS---------- 1101 (2435)
Q Consensus 1043 v~~l~~spdg~~Lavg~-~dg~V~i~d~~~~~~~~~-l~~----h~--~~V~sl~~---spdg~~L~Sgs---------- 1101 (2435)
..+++|++....|.+++ ..+.|..|+...+..... +.+ .. ..+..|.| .++++++++..
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~ 94 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ 94 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence 34678988777777776 689999999875543333 222 11 13689999 68877777544
Q ss_pred ---CCCcEEEEEcc---CCceeEEEe--cc-----------CCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCcceeEE
Q psy4869 1102 ---GDRTVKVWGLD---YGDCHKSLL--AH-----------EDSVTGVTFVPKTHYFFTTSKD-GRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1102 ---~Dg~I~vWd~~---t~~~~~~l~--~h-----------~~~V~~v~fsp~~~~l~s~s~D-g~V~iwD~~~~~~~~~ 1161 (2435)
.+..|..+|+. +++.+.... .. ......++..++|+..++++.. +.|..++.... ....
T Consensus 95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~ 173 (334)
T 2p9w_A 95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVST 173 (334)
T ss_dssp CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence 26779999999 888776654 11 1258899999999999988888 88887776643 2222
Q ss_pred EEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCce--eeEee--cc---CCCEEEE-EEeeCCCE-EEEE
Q psy4869 1162 LHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC--HKSLL--AH---EDSVTGV-TFVPKTHY-FFTT 1232 (2435)
Q Consensus 1162 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~--~~~~~--~h---~~~V~~i-~~spd~~~-lvsg 1232 (2435)
+.............+.|+++|+|..|++...+|.+..+|+..... +. +. +. -.....| ..-.+++. +++.
T Consensus 174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~vllV~~ 252 (334)
T 2p9w_A 174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNESVLVGA 252 (334)
T ss_dssp EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccCCEEEEEEc
Confidence 211000112234577999999999999887799999999884322 11 11 11 1223443 22237777 4444
Q ss_pred ECCCcEEEEECCCCc
Q psy4869 1233 SKDGRVKQWDADNFE 1247 (2435)
Q Consensus 1233 s~Dg~I~vwD~~~~~ 1247 (2435)
...+.+.+.+....+
T Consensus 253 ~~~~~~~l~S~DgW~ 267 (334)
T 2p9w_A 253 RAPYAISFRSWDNWK 267 (334)
T ss_dssp ETTEEEEEECSSTTS
T ss_pred CCCCEEEEECCCCcc
Confidence 456666666554433
No 346
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.08 E-value=0.42 Score=57.18 Aligned_cols=253 Identities=12% Similarity=0.119 Sum_probs=151.3
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+..|.|.|+.+.......-..-. +.-.+|..+.|+.-. ...+.+||+++.+.++...-.. .|.-..|......-
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~ 121 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 121 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEE
T ss_pred CCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEE
Confidence 33788888876544332222222 233467666666554 6789999999998887776543 44444555554333
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEeec-----CcccEEEEEECCCCCEEEEEec-------CCeEEEEECCCCcEEEEEec
Q psy4869 463 IASGSDDCTVKVWDPRKK-NQAVSMN-----NTYQVTSVAFNDTAECVLTGGI-------DNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~-~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs~-------dg~V~lwD~~s~~~v~~l~~ 529 (2435)
+++ +..|..|++... .+...+. ....|...+.+++.++++..+- .|.+.||..+.+ .-+.++|
T Consensus 122 lVT---~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG 197 (365)
T 2xzh_A 122 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG 197 (365)
T ss_dssp EEE---SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC
T ss_pred EEc---CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeee
Confidence 333 467999998743 3433332 2456888888999998775432 377889998765 4456677
Q ss_pred CCCCEEEEEEcCC---CCEEEEEEC---CCcEEEEEcCCCC-C----CCceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 530 HSDTVTGLSLSPD---GSYILSNAM---DNTVRIWDIRPYV-P----GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 530 h~~~V~~i~~spd---g~~las~s~---Dg~I~lWdl~~~~-~----~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
|.+.-..+.+.-+ .+.++-+.. .+.++|-++.... . ..+.+..+.... ...+-...+..++....++.
T Consensus 198 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppe-a~~DFPVamqvs~kygviyv 276 (365)
T 2xzh_A 198 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFL 276 (365)
T ss_dssp SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTT-CTTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCcc-ccCCceEEEEecccCCEEEE
Confidence 7654433332211 113333333 2588999985421 1 112222222222 22344567788888888999
Q ss_pred ecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCc
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKT 646 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~ 646 (2435)
-..-|.|++||++++.++..-+-....|..-+-+....-++.....|.
T Consensus 277 iTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~Gq 324 (365)
T 2xzh_A 277 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 324 (365)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCE
T ss_pred EeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCE
Confidence 999999999999999998876655555554444433333333334443
No 347
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.00 E-value=0.21 Score=68.85 Aligned_cols=241 Identities=10% Similarity=-0.076 Sum_probs=145.9
Q ss_pred EEEEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEE-eCCCeEEEEEccCC----ceeecc
Q psy4869 889 RALAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVG-TKDGRLLIVDIGAG----EILEDI 963 (2435)
Q Consensus 889 ~~la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg-~~dg~V~vwd~~sg----~~v~~~ 963 (2435)
+|.++... .+|.......|+..++........+.....+.+|+|.+.+..|+.. ...++|+.+++... .....+
T Consensus 388 ~C~~~~~~-p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 388 ACKAVGSI-AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp CCEETTSC-CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE
T ss_pred eeeecccc-cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE
Confidence 34444332 3555556677888888877766666666677899999966666654 46788999988753 222222
Q ss_pred cccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCE
Q psy4869 964 PAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQV 1043 (2435)
Q Consensus 964 ~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v 1043 (2435)
.........|++...+ +..+++-...+.|.+.+++.... .++ ....-..+
T Consensus 467 ~~~l~~P~GLAvD~~~---------~~LY~tD~~~~~I~v~~ldG~~~---------------~~l------~~~~l~~P 516 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIH---------SNIYWTDSVLGTVSVADTKGVKR---------------KTL------FRENGSKP 516 (791)
T ss_dssp CSSCSCCCEEEEETTT---------TEEEEEETTTTEEEEEETTSSSE---------------EEE------EECTTCCE
T ss_pred ecCCCCcceeeeeecC---------CcEEEEecCCCeEEEEeCCCCeE---------------EEE------EeCCCCCc
Confidence 2222344566666543 24556656678888888753210 000 00112457
Q ss_pred EEEEEcCCCCEEEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEccCCceeEEE
Q psy4869 1044 LCARVSPDSKLLAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSG-DRTVKVWGLDYGDCHKSL 1120 (2435)
Q Consensus 1044 ~~l~~spdg~~Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~-Dg~I~vWd~~t~~~~~~l 1120 (2435)
..|+++|.+.+|+..... +.|.+.+++.......+...-.....|++.+.+..|+.+.. .+.|...+++.......+
T Consensus 517 ~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~ 596 (791)
T 3m0c_C 517 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 596 (791)
T ss_dssp EEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred ceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe
Confidence 899999998888888643 67888888765554445544467889999987777776654 567888888644433333
Q ss_pred ec--cCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCcceeEEE
Q psy4869 1121 LA--HEDSVTGVTFVPKTHYFFTTS-KDGRVKQWDADNFERIVTL 1162 (2435)
Q Consensus 1121 ~~--h~~~V~~v~fsp~~~~l~s~s-~Dg~V~iwD~~~~~~~~~~ 1162 (2435)
.. .-....+|++. +..|+.+. ..+.|...|..+++.+..+
T Consensus 597 ~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 597 EDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp ECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred cCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 32 12234566664 33455444 4567777777666554443
No 348
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.89 E-value=0.81 Score=54.81 Aligned_cols=263 Identities=8% Similarity=0.021 Sum_probs=158.1
Q ss_pred CcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD 1183 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d 1183 (2435)
..|.|.|+..+..+.+..-. -.+.-.+|..+.++.-. ...+.+||+++..++.... ...+|.--.|-.+
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi~---AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~-------~~e~VvfWkWis~ 117 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWISL 117 (365)
T ss_dssp EEEEEEETTSTTSCEEEECC---CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE-------CSSCEEEEEECSS
T ss_pred CEEEEEECCCCCCccccccc---cceeeeCCCccEEEEec-CCeEEEechHHhhhhccee-------cCCccEEEEecCC
Confidence 36888888776544332211 12344578777776665 6889999999988776653 2456766677644
Q ss_pred CCEEEEEeCCCcEEEEEccC-CceeeEeeccC----CCEEEEEEeeCCCEEEEEEC-------CCcEEEEECCCCceEEE
Q psy4869 1184 STLIATGSGDRTVKVWGLDY-GDCHKSLLAHE----DSVTGVTFVPKTHYFFTTSK-------DGRVKQWDADNFERIVT 1251 (2435)
Q Consensus 1184 g~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h~----~~V~~i~~spd~~~lvsgs~-------Dg~I~vwD~~~~~~v~~ 1251 (2435)
+.|+..+ +..|+.|++.. ..+.+.+..|. ..|..-+.+++.++++..+- .|.+.+|....... ..
T Consensus 118 -~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ 194 (365)
T 2xzh_A 118 -NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QP 194 (365)
T ss_dssp -SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EE
T ss_pred -CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccccc-ce
Confidence 4444433 46799999975 34566666554 36777777888888777652 35677887765322 22
Q ss_pred EeeCCcccc-------cCceEEEE-EE---CCCeEEEEEccccc-ccccccccccccccccceeeeeecccccccccEEE
Q psy4869 1252 LHFNPNVYL-------PLQIQVVT-GG---GDKSVKLWQLELVS-VNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLC 1319 (2435)
Q Consensus 1252 ~~~~~~~~~-------~~~~~lv~-g~---~d~~v~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1319 (2435)
++.+...|. +....+++ +. ..+++++-++.... .. .....+....... .......-.+
T Consensus 195 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~---------~~f~kk~vdi~fp-pea~~DFPVa 264 (365)
T 2xzh_A 195 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---------QPFPKKAVDVFFP-PEAQNDFPVA 264 (365)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTC---------CCCCCEEEEECCC-TTCTTCCEEE
T ss_pred eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCC---------CCcccccceeeCC-ccccCCceEE
Confidence 333333331 12222332 21 22578888875321 10 0000111111111 1123455667
Q ss_pred EEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCce
Q psy4869 1320 ARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC 1390 (2435)
Q Consensus 1320 ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~ 1390 (2435)
+..++.-..+.+-+.-|.+++||++++.++..-+--..+|..-+...+..=|+.-...|.|.-..+++.++
T Consensus 265 mqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 265 MQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred EEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 88888888888999999999999999999888886666776666555444445555667666665555443
No 349
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.81 E-value=0.087 Score=63.86 Aligned_cols=204 Identities=9% Similarity=0.090 Sum_probs=130.7
Q ss_pred eccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe-ecC-------cccEEEEEE---CCCCCEEEEEec---
Q psy4869 444 KGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS-MNN-------TYQVTSVAF---NDTAECVLTGGI--- 509 (2435)
Q Consensus 444 ~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~-~~~-------~~~v~sv~~---sp~g~~l~sgs~--- 509 (2435)
........+++|.+.+..++++.-..+.|..||...+..... +.. ...+..+.| .|+++++++...
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a 88 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS 88 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence 333444556778777777777777899999999975543322 221 124689999 688888876542
Q ss_pred ----------CCeEEEEECC---CCcEEEEEe--c-----------CCCCEEEEEEcCCCCEEEEEECC-CcEEEEEcCC
Q psy4869 510 ----------DNDIKMWDLR---TNSVVQKLR--G-----------HSDTVTGLSLSPDGSYILSNAMD-NTVRIWDIRP 562 (2435)
Q Consensus 510 ----------dg~V~lwD~~---s~~~v~~l~--~-----------h~~~V~~i~~spdg~~las~s~D-g~I~lWdl~~ 562 (2435)
+..|..||+. +++.+.... . -......++..++|+..++++.- +.|...+..
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd- 167 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD- 167 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT-
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC-
Confidence 6789999999 777765543 1 11358899999999999998887 777666654
Q ss_pred CCCCCceEEEEe-Ccc-cccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCcE--EEEec--CC---CCCeeEE-EEc
Q psy4869 563 YVPGERCVKVMS-GHQ-HNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRRI--AYKLP--GH---NGSVNDV-QFH 632 (2435)
Q Consensus 563 ~~~~~~~v~~~~-~h~-~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~--~~~l~--~h---~~~V~~l-~fs 632 (2435)
++.+..+. ... .........+++.|+|+.|++...+|.|..+|+..... +. +. +. -.....| .--
T Consensus 168 ----G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~ 242 (334)
T 2p9w_A 168 ----GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVP 242 (334)
T ss_dssp ----SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEE
T ss_pred ----CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccc
Confidence 22233222 111 11122456899999999888886799999999885433 21 11 22 1223343 333
Q ss_pred CCCCE-EEEEECCCcEEEecCC
Q psy4869 633 PKEPI-IMSASSDKTIYLGESP 653 (2435)
Q Consensus 633 pd~~~-Lasgs~Dg~I~vWd~~ 653 (2435)
.+++. |++.+..+.+.+.+.+
T Consensus 243 ~~G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 243 VGNESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp ETTEEEEEEEETTEEEEEECSS
T ss_pred cCCEEEEEEcCCCCEEEEECCC
Confidence 46666 5555566666665554
No 350
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.79 E-value=0.26 Score=61.53 Aligned_cols=227 Identities=9% Similarity=0.043 Sum_probs=122.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee---CCCCCeeEEEEccC---CCEEEEEeC-C-----CeEEE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS---GHTGAVMDLKFSTD---GCHIFTCST-D-----QTLAV 431 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~---~h~~~V~~l~~s~d---g~~L~s~s~-D-----g~I~v 431 (2435)
.-..++|.|+|+++++ ..+|.|++++ ......+..+. ........|+|+|| +..|+.+.. + +.|..
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 3468999999985554 6679999998 44322222221 22457899999998 556665543 2 67888
Q ss_pred EECCCCc-----eE-EEEe---ccCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC----------
Q psy4869 432 WDLEKGQ-----RI-KKMK---GHSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK---------- 480 (2435)
Q Consensus 432 wd~~tg~-----~v-~~l~---~h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~---------- 480 (2435)
|+...+. .+ ..+. +.......+.|.+++..++..+.. .+.|.-+|....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 8876442 11 1233 112234678889988544444321 256666665431
Q ss_pred ----cceEeecCcccEEEEEECC-CCCEEEEEecCCe--------EEEEECCC----------------CcEEEEEecCC
Q psy4869 481 ----NQAVSMNNTYQVTSVAFND-TAECVLTGGIDND--------IKMWDLRT----------------NSVVQKLRGHS 531 (2435)
Q Consensus 481 ----~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg~--------V~lwD~~s----------------~~~v~~l~~h~ 531 (2435)
..+....+ .....++|+| +|+++++-...+. |.+..... ..++..+. +.
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 267 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QG 267 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CC
Confidence 11212222 2366789999 5665554332222 33332111 01223332 23
Q ss_pred CCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCC--CceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 532 DTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPG--ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 532 ~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~--~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
.....++| .+|..+++.-..+.|...++...... ......+-. ....+..+++.|||.++++.
T Consensus 268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~----~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS----GFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE----SSCCEEEEEECTTSCEEEEE
T ss_pred CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc----cCCCeeEEEECCCCcEEEEE
Confidence 34567788 46776666656777877777532110 000111111 11367889999998766654
No 351
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.69 E-value=1.4 Score=54.75 Aligned_cols=259 Identities=11% Similarity=0.096 Sum_probs=158.5
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
+..|.|-|+.+.......-..- -+.-.+|..+.|+.-. ...+.+||+++.+.++.+.-.. .|.-..|......-
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~A----dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCC----SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEE
T ss_pred CCeEEEEECCCCCcceeccccc----ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEE
Confidence 3478888887644332222111 2233456555555444 6799999999998887776544 34445555554333
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEeec-----CcccEEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEEec
Q psy4869 463 IASGSDDCTVKVWDPRKK-NQAVSMN-----NTYQVTSVAFNDTAECVLTGG-------IDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~-~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs-------~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
++ .+..|..|++... .+...+. ....|.....+++.++++..+ -.|.+.+|..+.+. -+.++|
T Consensus 121 lV---T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG 196 (494)
T 1bpo_A 121 LV---TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (494)
T ss_dssp EE---CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred EE---cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence 33 2467999999743 3433332 245688888899999887543 24778899987663 356677
Q ss_pred CCCCEEEEEEcCCC---CEEEEEECC---CcEEEEEcCCCC-C----CCceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 530 HSDTVTGLSLSPDG---SYILSNAMD---NTVRIWDIRPYV-P----GERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 530 h~~~V~~i~~spdg---~~las~s~D---g~I~lWdl~~~~-~----~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
|.+.-..+.+.-+. +.++-+... +.++|-++.... . ..+.+..+.... ...+-...+..++....++.
T Consensus 197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe-~~~DFPvamqvs~kygviyv 275 (494)
T 1bpo_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFL 275 (494)
T ss_dssp SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT-STTCCEEEEEEETTTTEEEE
T ss_pred eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc-cccCceeEEEecccCCEEEE
Confidence 76555444433221 234444442 789999986421 0 112222222222 22334567888888888999
Q ss_pred ecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
-..-|.|++||++++.++..-+-....|..-+-+....-++.....|.|.--.+
T Consensus 276 iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v 329 (494)
T 1bpo_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (494)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEE
T ss_pred EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEE
Confidence 999999999999999999877666666666565555555555555665544433
No 352
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.61 E-value=0.0065 Score=83.38 Aligned_cols=240 Identities=8% Similarity=0.001 Sum_probs=137.1
Q ss_pred CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEe-CCCeEEEEECCC----CceEEEEeccCccccccCcc
Q psy4869 382 YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCS-TDQTLAVWDLEK----GQRIKKMKGHSTFVNSCDPV 456 (2435)
Q Consensus 382 ~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s-~Dg~I~vwd~~t----g~~v~~l~~h~~~v~sv~~~ 456 (2435)
..+.|++.++..... ..+......+..|+|++.+..|+.+. ..+.|+.+++.. ......+.........+++.
T Consensus 384 ~~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 345677777764321 12222234677899998776666654 457899999865 12211221112234456666
Q ss_pred cCCCeEEEEEeCCCeEEEEeCCCCcceEeec-CcccEEEEEECCCCCEEEEEec--CCeEEEEECCCCcEEEEEecCCCC
Q psy4869 457 RRGQLLIASGSDDCTVKVWDPRKKNQAVSMN-NTYQVTSVAFNDTAECVLTGGI--DNDIKMWDLRTNSVVQKLRGHSDT 533 (2435)
Q Consensus 457 ~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~-~~~~v~sv~~sp~g~~l~sgs~--dg~V~lwD~~s~~~v~~l~~h~~~ 533 (2435)
+.+..++++-...+.|.++++........+. .......++++|.+.+|+.... .+.|..+++........+...-..
T Consensus 462 ~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~ 541 (699)
T 1n7d_A 462 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 541 (699)
T ss_dssp CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSS
T ss_pred eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCC
Confidence 5566677766677889999987654433332 2345678899997776666543 278888887543222222222334
Q ss_pred EEEEEEcCCCCEEE-EEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCC
Q psy4869 534 VTGLSLSPDGSYIL-SNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTT 612 (2435)
Q Consensus 534 V~~i~~spdg~~la-s~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s 612 (2435)
.+.|+|+|++.+|+ +-+..+.|..+|+.. ......+.... . ......+++..+ .++++-...+.|..+|..+
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG----~~~~~~~~~~~-~-~~~P~glavd~~-~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNG----GNRKTILEDEK-R-LAHPFSLAVFED-KVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSS----SCCEEECCCSS-S-CSSCCCCEEETT-EEEEECSTTTCEEEEETTT
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCC----CceEEEEecCC-c-CCCceEeEEECC-EEEEEeCCCCeEEEEEccC
Confidence 57899999765555 445677899999863 11111111110 0 012233444433 4444555678999999988
Q ss_pred CcEEEEecCCCCCeeEEE
Q psy4869 613 RRIAYKLPGHNGSVNDVQ 630 (2435)
Q Consensus 613 ~~~~~~l~~h~~~V~~l~ 630 (2435)
++.+..+......+..|+
T Consensus 615 G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 615 GSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEEECCCTTCSSCCCCC
T ss_pred CCceEEeecCCCCCcEEE
Confidence 888877754333344443
No 353
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.58 E-value=1.8 Score=53.82 Aligned_cols=240 Identities=8% Similarity=0.004 Sum_probs=142.4
Q ss_pred CCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
+..|.|.|+..+..+.+.... -.+.-.+|..+.++.-. ...+.+||+++..++.... ...+|.--.|-.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~-------~~e~VvfWkWis 115 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWIS 115 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE-------CSSCCCEEEEEE
T ss_pred CCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee-------cCCCceEEEecC
Confidence 336888888876544332211 12445677777666554 6899999999987776653 234565556653
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeeccC----CCEEEEEEeeCCCEEEEEEC-------CCcEEEEECCCCceEE
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHE----DSVTGVTFVPKTHYFFTTSK-------DGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h~----~~V~~i~~spd~~~lvsgs~-------Dg~I~vwD~~~~~~v~ 1250 (2435)
+ +.|+.. .+..|+.|++.. ..+.+.+..|. ..|..-..+++.++++..|- .|.+.+|....... .
T Consensus 116 ~-~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q 192 (494)
T 1bpo_A 116 L-NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q 192 (494)
T ss_dssp T-TEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-E
T ss_pred C-CeEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-c
Confidence 3 344444 346799999974 34566666554 36777777888888876652 35677887765432 2
Q ss_pred EEeeCCcccc-------cCceEEEE-EEC---CCeEEEEEccccc-ccccccccccccccccceeeeeecccccccccEE
Q psy4869 1251 TLHFNPNVYL-------PLQIQVVT-GGG---DKSVKLWQLELVS-VNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1251 ~~~~~~~~~~-------~~~~~lv~-g~~---d~~v~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.++.+...|. +....+++ +.. .+++++-++.... .. ....+....+..........-.
T Consensus 193 ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~----------~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN----------QPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp EECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC----------CCCCCEEEECCCCTTSTTCCEE
T ss_pred hheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC----------CCccceeeeeeCCcccccCcee
Confidence 2333333331 11122333 222 2788888885331 10 0000000001111112345566
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEEEEEec
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLSLDMSY 1366 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~la~sp 1366 (2435)
++..++.-..+.+-+.-|.+++||++++.++..-+--..+|..-+...
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~ 310 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE 310 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccC
Confidence 788888888888999999999999999998877775555554444333
No 354
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.54 E-value=0.75 Score=57.32 Aligned_cols=228 Identities=10% Similarity=0.074 Sum_probs=125.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCceeeEEEee---CCCCCeeEEEEccC---CCEEEEEeC----C----CeE
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECENIGVMS---GHTGAVMDLKFSTD---GCHIFTCST----D----QTL 429 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~~~~~l~---~h~~~V~~l~~s~d---g~~L~s~s~----D----g~I 429 (2435)
.-..++|.|+|++++ +..+|+|+++|..+. ..+..+. ........|+++|+ +..|+.+.. + ..|
T Consensus 30 ~P~~ia~~pdG~l~V-~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLV-TERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEEEcCCCeEEE-EeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 456899999998555 466799999974433 2332221 22356899999997 556655443 3 567
Q ss_pred EEEECCCC--c-----eE-EEEec-cCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC--------
Q psy4869 430 AVWDLEKG--Q-----RI-KKMKG-HSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK-------- 480 (2435)
Q Consensus 430 ~vwd~~tg--~-----~v-~~l~~-h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~-------- 480 (2435)
..|+...+ . .+ ..+.. .......+.|.|++..++..+.. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~ 187 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP 187 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence 77877544 1 11 11221 12235678889988655544431 245666665432
Q ss_pred -cceEeecCcccEEEEEECC-CCCEEEEEecCC---eEEEEECCC----------------CcEEEEEecCCCCEEEEEE
Q psy4869 481 -NQAVSMNNTYQVTSVAFND-TAECVLTGGIDN---DIKMWDLRT----------------NSVVQKLRGHSDTVTGLSL 539 (2435)
Q Consensus 481 -~~~~~~~~~~~v~sv~~sp-~g~~l~sgs~dg---~V~lwD~~s----------------~~~v~~l~~h~~~V~~i~~ 539 (2435)
..+....+ .....++|+| +|+++++-...+ .|.+...-. ..++..+.........+.|
T Consensus 188 ~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 188 NSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp TCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred CCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 11222222 2356899999 566554432221 244332111 0122333112345788888
Q ss_pred c-------CCCCEEEEEECCCcEEEEEcCCCCCCCceE--EEEeCcccccccCeEEEEEcCCCCEEEEec
Q psy4869 540 S-------PDGSYILSNAMDNTVRIWDIRPYVPGERCV--KVMSGHQHNFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 540 s-------pdg~~las~s~Dg~I~lWdl~~~~~~~~~v--~~~~~h~~~~~~~i~~v~~spdg~~Lasgs 600 (2435)
. .+|.++++.-..+.|...++... .+.. ..+... ....+..+++.|||.++++..
T Consensus 267 y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~---g~~~~~~~~~~~---~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 267 VHGDMFPGLRGWLLIACLRGSMLAAVNFGDN---MEVRKISTFFKN---VFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCSSSCGGGTTEEEEEETTTTEEEEEEECGG---GCEEEEEEECTT---TSCCEEEEEECTTSCEEEEEC
T ss_pred ECCCCCcccCCcEEEEEcCCCEEEEEEECCC---CcccceeeeccC---CCCCeeEEEECCCCcEEEEEe
Confidence 4 56777776666778888887631 1121 122111 123678899999997666653
No 355
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.38 E-value=0.35 Score=60.36 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=120.5
Q ss_pred CceEEEEecCCCcEEEEecCCcEEEEeCCCCce--eEEEe----CCCeEEEEEEecC---CCEEEEEeC-C-----CeEE
Q psy4869 886 SEVRALAFSSDNLALVSACASQVKIWNRPSLSC--LRTID----TGSYALSVCFVPG---DRHVLVGTK-D-----GRLL 950 (2435)
Q Consensus 886 ~~V~~la~s~dg~~la~g~~~~V~Iwd~~~~~~--~~~l~----~~~~v~~vafspd---g~~Lavg~~-d-----g~V~ 950 (2435)
..+..++|.|||+++++-..+.|.+++ .++. +..+. .......|+|+|+ +++|.+... + +.|.
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 367899999999987776678999998 3332 22222 2346789999998 666666443 2 6888
Q ss_pred EEEccCCc------eeecccc---cccceeEEEEecCCCCCCCcCCcceEEEEEeCC-------------CeEEEEEccc
Q psy4869 951 IVDIGAGE------ILEDIPA---HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD-------------KSVKLWQLEL 1008 (2435)
Q Consensus 951 vwd~~sg~------~v~~~~~---h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D-------------g~V~lW~l~~ 1008 (2435)
.|+...+. ++..++. .......++|.+++ ..+++.+.. |.|..++.+.
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG----------~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG----------MLYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS----------CEEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC----------CEEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 88887542 2222331 11123567887775 344443221 3333333221
Q ss_pred ccccccccccccccccccceeeeeeccccccCCCEEEEEEcC-CCCEEEEEECCCc--------EEEEEcCC--------
Q psy4869 1009 VSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSP-DSKLLAVSLLDTT--------VKIFFLDT-------- 1071 (2435)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~sp-dg~~Lavg~~dg~--------V~i~d~~~-------- 1071 (2435)
.... ............++.. .. -.....++|+| +|.++++-..... |.+.....
T Consensus 179 -~~p~-~npf~~~~~~~~~i~a------~G-~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~ 249 (352)
T 2ism_A 179 -EPAP-GNPFLGRRGARPEVYS------LG-HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVV 249 (352)
T ss_dssp -SBCT-TCTTTTCTTSCTTEEE------EC-CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCC
T ss_pred -CCCC-CCcccCCCCCCccEEE------Ec-CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCccc
Confidence 1000 0000000000001100 00 12366789999 5554444332222 33322111
Q ss_pred --------CeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccCCce------eEEEeccCCCEEEEEEccCCC
Q psy4869 1072 --------FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDC------HKSLLAHEDSVTGVTFVPKTH 1137 (2435)
Q Consensus 1072 --------~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~------~~~l~~h~~~V~~v~fsp~~~ 1137 (2435)
...+..+ .+......++| .+|.++++.-..+.|...+++.... ...+......+..+++.|++.
T Consensus 250 g~~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~ 327 (352)
T 2ism_A 250 GRGNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA 327 (352)
T ss_dssp SCCCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC
T ss_pred CCCCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc
Confidence 0112222 22334567777 4676666666667788877764431 122222235688999999987
Q ss_pred EEEEEe
Q psy4869 1138 YFFTTS 1143 (2435)
Q Consensus 1138 ~l~s~s 1143 (2435)
++++..
T Consensus 328 lyv~~~ 333 (352)
T 2ism_A 328 LYVTTS 333 (352)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 666554
No 356
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.87 E-value=0.012 Score=80.71 Aligned_cols=231 Identities=9% Similarity=-0.061 Sum_probs=126.1
Q ss_pred EEEecCCcEEEEeCCCCceeEEEeCCCeEEEEEEecCCCEEEEEe-CCCeEEEEEccC----CceeecccccccceeEEE
Q psy4869 900 LVSACASQVKIWNRPSLSCLRTIDTGSYALSVCFVPGDRHVLVGT-KDGRLLIVDIGA----GEILEDIPAHSQELWSVA 974 (2435)
Q Consensus 900 la~g~~~~V~Iwd~~~~~~~~~l~~~~~v~~vafspdg~~Lavg~-~dg~V~vwd~~s----g~~v~~~~~h~~~V~sv~ 974 (2435)
|+......|++.++.+.+....+.....+.+|+|.+.++.|+... ..+.|..+++.. ......+.........|+
T Consensus 380 ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp BCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred EEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 334445677888888776655555445566889999777777654 568999999875 222222221112234455
Q ss_pred EecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCE
Q psy4869 975 MLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKL 1054 (2435)
Q Consensus 975 ~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~ 1054 (2435)
+...+ +..+++-...+.|.+.+++.... . . +. .........++++|.+.+
T Consensus 460 vD~~~---------g~LY~tD~~~~~I~v~d~dg~~~--------~-------~--l~----~~~~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 460 VDWIH---------SNIYWTDSVLGTVSVADTKGVKR--------K-------T--LF----REQGSKPRAIVVDPVHGF 509 (699)
T ss_dssp CCCSS---------SBCEECCTTTSCEEEEBSSSCCE--------E-------E--EC----CCSSCCCCCEECCSSSSC
T ss_pred EEeeC---------CcEEEEeccCCeEEEEecCCCce--------E-------E--EE----eCCCCCcceEEEccCCCc
Confidence 54322 13444444567787777652110 0 0 00 001123567889998777
Q ss_pred EEEEECC--CcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEEccCCceeEEEec--cCCCEEE
Q psy4869 1055 LAVSLLD--TTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATG-SGDRTVKVWGLDYGDCHKSLLA--HEDSVTG 1129 (2435)
Q Consensus 1055 Lavg~~d--g~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sg-s~Dg~I~vWd~~t~~~~~~l~~--h~~~V~~ 1129 (2435)
|+++... +.|.+++++.......+...-.....|+|++++..|+.+ ...+.|.++++........+.. .......
T Consensus 510 ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~g 589 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFS 589 (699)
T ss_dssp CEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCC
T ss_pred EEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceE
Confidence 7776532 677777765432222222222345688999876555544 4567899999864332222221 1122334
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCcceeEE
Q psy4869 1130 VTFVPKTHYFFTTSKDGRVKQWDADNFERIVT 1161 (2435)
Q Consensus 1130 v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~ 1161 (2435)
|++.. +.++++....+.|..++..+++.+..
T Consensus 590 lavd~-~~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 590 LAVFE-DKVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp CEEET-TEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred eEEEC-CEEEEEeCCCCeEEEEEccCCCceEE
Confidence 55543 23344444567888888776654433
No 357
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.77 E-value=2.2 Score=53.09 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCC---CCEEEEEeC----C----
Q psy4869 1125 DSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYD---STLIATGSG----D---- 1193 (2435)
Q Consensus 1125 ~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~d---g~~l~sgs~----D---- 1193 (2435)
.....++|.|+++ |+++..++.|+++|. ++. ..+..+............|+++|+ +..|++... +
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 4568999999987 555667799999973 333 222111111123457899999997 556665543 2
Q ss_pred CcEEEEEccCC--c-----e-eeEeec-cCCCEEEEEEeeCCCEEEEEE
Q psy4869 1194 RTVKVWGLDYG--D-----C-HKSLLA-HEDSVTGVTFVPKTHYFFTTS 1233 (2435)
Q Consensus 1194 g~V~iwd~~t~--~-----~-~~~~~~-h~~~V~~i~~spd~~~lvsgs 1233 (2435)
+.|..|+.... . . +..+.. .......|.|.||+.+.++.+
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 56777877644 1 1 111221 112346788888887666544
No 358
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.40 E-value=4.4 Score=50.07 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=113.0
Q ss_pred EEEEECCCCCEEEEE------------eCCCeEEEEecCCc--eeeEEEeeC-----CCCCeeEEEEcc--CCC-EEEEE
Q psy4869 366 FCSKYHPDGQYIASS------------GYDRQIFIWSVYGE--CENIGVMSG-----HTGAVMDLKFST--DGC-HIFTC 423 (2435)
Q Consensus 366 ~~l~fspdg~~Lasg------------s~Dg~I~iwd~~~~--~~~~~~l~~-----h~~~V~~l~~s~--dg~-~L~s~ 423 (2435)
-.+.+.|+|..++++ ..+|.|.++|.... ......+.+ .......|.+.+ ++. +|+.+
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv 132 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV 132 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence 345567777555554 27899999998632 111112222 234677888766 454 45555
Q ss_pred eC---CCeEEEEECCCC-c---eEEEEecc-CccccccCcccCCCeEEEEEe-----------------CCCeEEEEeCC
Q psy4869 424 ST---DQTLAVWDLEKG-Q---RIKKMKGH-STFVNSCDPVRRGQLLIASGS-----------------DDCTVKVWDPR 478 (2435)
Q Consensus 424 s~---Dg~I~vwd~~tg-~---~v~~l~~h-~~~v~sv~~~~~~~~llasgs-----------------~Dg~I~vwD~~ 478 (2435)
.. +..|.+|+++.+ . .+..+.+. -...+++.+.+++..+ ++.. ..+.|..+|.
T Consensus 133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fy-vt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFY-ATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEE-EEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEE-ecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 32 457888877653 2 22333332 2345677777777433 3322 1245555665
Q ss_pred CCcceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCC-CcE--EEEEecCCCCEEEEEEcC-CCCEEEEEECC-
Q psy4869 479 KKNQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRT-NSV--VQKLRGHSDTVTGLSLSP-DGSYILSNAMD- 552 (2435)
Q Consensus 479 ~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s-~~~--v~~l~~h~~~V~~i~~sp-dg~~las~s~D- 552 (2435)
++.......-...+.++|+||+++|+++. ..+.|+.||+.. ++. .+.+ ...+..-.+++.+ +|++.+++..+
T Consensus 211 -~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g 288 (355)
T 3sre_A 211 -NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNG 288 (355)
T ss_dssp -TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCH
T ss_pred -CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCc
Confidence 33332233445679999999999888876 468999999863 332 2233 2345678899999 59988877654
Q ss_pred CcEEEEEcC
Q psy4869 553 NTVRIWDIR 561 (2435)
Q Consensus 553 g~I~lWdl~ 561 (2435)
+.|..||..
T Consensus 289 ~~v~~~~P~ 297 (355)
T 3sre_A 289 MRIFFYDAE 297 (355)
T ss_dssp HHHHSCCTT
T ss_pred eEEEEECCC
Confidence 355555543
No 359
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.15 E-value=4.4 Score=49.85 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=67.0
Q ss_pred EeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEE-eecccccCeEEEEEeCC---CCEEEEE---eC
Q psy4869 1120 LLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFI-SLYGHKLPVLSLDMSYD---STLIATG---SG 1192 (2435)
Q Consensus 1120 l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~-~~~~h~~~V~~l~~s~d---g~~l~sg---s~ 1192 (2435)
+...-...+.++|.|+++++++--..|.|++++...+... .+.... ...........|+++|+ +..|++. ..
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~-~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT-ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe-eecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 3333456789999999986665544899999986654432 121110 11234677899999995 4555553 23
Q ss_pred CCcEEEEEccCCc----------ee-eEee-ccCCCEEEEEEeeCCCEEEEEECC
Q psy4869 1193 DRTVKVWGLDYGD----------CH-KSLL-AHEDSVTGVTFVPKTHYFFTTSKD 1235 (2435)
Q Consensus 1193 Dg~V~iwd~~t~~----------~~-~~~~-~h~~~V~~i~~spd~~~lvsgs~D 1235 (2435)
++.|.-|.+..+. .+ ..+. ........|.|.||+.+.++.+..
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 4566666665421 11 1121 112234678899998877765543
No 360
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.09 E-value=0.82 Score=57.00 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=124.9
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEe-------ccCccccccCcccC---CCeEEEEEeC-------
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMK-------GHSTFVNSCDPVRR---GQLLIASGSD------- 468 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~-------~h~~~v~sv~~~~~---~~~llasgs~------- 468 (2435)
.....|+|.|||++|+.+...|.|++++.. ++....+. ........+++.|+ +..+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356789999999845566678999999853 33211111 11223466788885 4455555433
Q ss_pred CCeEEEEeCCCCc-------ceE-eec----CcccEEEEEECCCCCEEEEEec-------------CCeEEEEECCCCc-
Q psy4869 469 DCTVKVWDPRKKN-------QAV-SMN----NTYQVTSVAFNDTAECVLTGGI-------------DNDIKMWDLRTNS- 522 (2435)
Q Consensus 469 Dg~I~vwD~~~~~-------~~~-~~~----~~~~v~sv~~sp~g~~l~sgs~-------------dg~V~lwD~~s~~- 522 (2435)
...|..|+..... .+. .+. ..+....++|.|||.+.++-+. .|.|.-+|....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2346556554321 111 111 1223467999999965554433 2567777765320
Q ss_pred -----------EEEEE-ecCCCCEEEEEEcC-CCCEEEEEE-CCCcEEEEEcCCCCC-----------------------
Q psy4869 523 -----------VVQKL-RGHSDTVTGLSLSP-DGSYILSNA-MDNTVRIWDIRPYVP----------------------- 565 (2435)
Q Consensus 523 -----------~v~~l-~~h~~~V~~i~~sp-dg~~las~s-~Dg~I~lWdl~~~~~----------------------- 565 (2435)
....+ .+|. ....++|+| +|+++++-. .++.=.|.-+.....
T Consensus 177 ~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCcCCCCCCccEEEEcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 11111 2343 357899999 555544422 222223322221100
Q ss_pred ----CCceEEEEeCcccccccCeEEEEEcC-------CCCEEEEecCCCeEEEEECCCCcEEEE---ecCCCCCeeEEEE
Q psy4869 566 ----GERCVKVMSGHQHNFEKNLLRCAWSV-------SGLYVTAGSADKCVYIWDTTTRRIAYK---LPGHNGSVNDVQF 631 (2435)
Q Consensus 566 ----~~~~v~~~~~h~~~~~~~i~~v~~sp-------dg~~Lasgs~Dg~V~iwd~~s~~~~~~---l~~h~~~V~~l~f 631 (2435)
...++..+..+ .....+.|-. +|+++++.-..+.|...++..++.+.. +......+..+++
T Consensus 256 ~~~~~~~P~~~~~~~-----~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~ 330 (353)
T 2g8s_A 256 IVAGTEQPVFYWKDS-----PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRT 330 (353)
T ss_dssp SCTTSCCCSEEESSC-----CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEE
T ss_pred CCCCccCCeEEeCCC-----cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEE
Confidence 00111122111 1345666653 577777777788888888876654432 2223357899999
Q ss_pred cCCCCEEEEEE-CCCcE
Q psy4869 632 HPKEPIIMSAS-SDKTI 647 (2435)
Q Consensus 632 spd~~~Lasgs-~Dg~I 647 (2435)
.|||.+.++.. .+|.|
T Consensus 331 ~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 331 GPDGYLYVLTDESSGEL 347 (353)
T ss_dssp CTTSCEEEEECSTTEEE
T ss_pred CCCCcEEEEEeCCCCEE
Confidence 99998655433 34443
No 361
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.35 Score=59.42 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=109.5
Q ss_pred CEEEEEeCCCeEEEEECCCCceEEEEecc-CccccccC--cccCCCeEEEEE-eCCCeEEEEeCCCCcceEeecCcccEE
Q psy4869 418 CHIFTCSTDQTLAVWDLEKGQRIKKMKGH-STFVNSCD--PVRRGQLLIASG-SDDCTVKVWDPRKKNQAVSMNNTYQVT 493 (2435)
Q Consensus 418 ~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h-~~~v~sv~--~~~~~~~llasg-s~Dg~I~vwD~~~~~~~~~~~~~~~v~ 493 (2435)
..++.++.||.|.-+|.++|+..-.++.. ...+.... -.+.+...++.. ..||.|..+|..++.....+.....+.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47899999999999999999988888754 11111111 011222444443 689999999998876555443211110
Q ss_pred --EEEEC-----------CCCCEEEEEecCCeEEEEECCCCcEEEEEecCC--CC-----EEEEEEc-----CCCCEEEE
Q psy4869 494 --SVAFN-----------DTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHS--DT-----VTGLSLS-----PDGSYILS 548 (2435)
Q Consensus 494 --sv~~s-----------p~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~--~~-----V~~i~~s-----pdg~~las 548 (2435)
-+... ..+..+++|+.+|.++..|+++|+.+..+.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 01111 145688999999999999999999999886321 11 1111111 12456777
Q ss_pred EECCCcEEEEEcCCCCCCCceEEEEeCcccccccCe-EEEEEcCCCCEEEEecCCCeEEEEECCCCcEEE
Q psy4869 549 NAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNL-LRCAWSVSGLYVTAGSADKCVYIWDTTTRRIAY 617 (2435)
Q Consensus 549 ~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i-~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~~~~ 617 (2435)
+..+..+.+.+ +....=......+..... ...+ ..-..+.|+++ +.++.||.|.-+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~--~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVL--DVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTT--THHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEeccccccccc--ccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77776666655 211000000111111100 0000 00001234666 447889999999999888765
No 362
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.09 E-value=7.5 Score=47.81 Aligned_cols=232 Identities=11% Similarity=0.117 Sum_probs=123.7
Q ss_pred CCcEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEe----eCCCCCeeEEEEccC---CCEEEEE---eCCCeEE
Q psy4869 362 GGEIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVM----SGHTGAVMDLKFSTD---GCHIFTC---STDQTLA 430 (2435)
Q Consensus 362 ~~~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l----~~h~~~V~~l~~s~d---g~~L~s~---s~Dg~I~ 430 (2435)
-..-..++|.|+|.++++--..|+|++++..+... .+..+ ....+....|+++|| +..|+.. ..++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34567899999999777765589999998653322 22222 123567899999995 4455543 2345666
Q ss_pred EEECCCC----------ceE-EEEe-ccCccccccCcccCCCeEEEEEe------------CCCeEEEEeCCCC------
Q psy4869 431 VWDLEKG----------QRI-KKMK-GHSTFVNSCDPVRRGQLLIASGS------------DDCTVKVWDPRKK------ 480 (2435)
Q Consensus 431 vwd~~tg----------~~v-~~l~-~h~~~v~sv~~~~~~~~llasgs------------~Dg~I~vwD~~~~------ 480 (2435)
-|.+..+ +.+ ..+. +..+....+.|.+++..++..|. ..+.|.-++....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6665441 111 1222 12234567888998865555443 1244444454422
Q ss_pred ---cceEeecCcccEEEEEECCCCCEEEEEe-cCCeEEEEECCCC------------------cEEEEEecCCCCEEEEE
Q psy4869 481 ---NQAVSMNNTYQVTSVAFNDTAECVLTGG-IDNDIKMWDLRTN------------------SVVQKLRGHSDTVTGLS 538 (2435)
Q Consensus 481 ---~~~~~~~~~~~v~sv~~sp~g~~l~sgs-~dg~V~lwD~~s~------------------~~v~~l~~h~~~V~~i~ 538 (2435)
..+....+. ....++|+|+|++.++-. .++.=.|.-+..+ .++..+..+......|.
T Consensus 191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~ 269 (347)
T 3das_A 191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA 269 (347)
T ss_dssp STTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred CCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence 112222332 356889999887665432 2222222222211 12233333333556777
Q ss_pred EcCCCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEe
Q psy4869 539 LSPDGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAG 599 (2435)
Q Consensus 539 ~spdg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasg 599 (2435)
|. +|..++..-..+.|....+.......+....+.+. ...+..+...|||.++++-
T Consensus 270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~----~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGE----YGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTT----SSCEEEEEEEETTEEEEEE
T ss_pred EE-cCceeeccccCCEEEEEEecCCceecceEEeecCC----CCCccEEEECCCCcEEEEE
Confidence 76 45556555556666666665321111122222221 2367888899998766554
No 363
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.97 E-value=1.3 Score=53.63 Aligned_cols=212 Identities=11% Similarity=0.051 Sum_probs=106.8
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC-----CeEEEEeCCCCc---ceEee--c-CcccEEEE
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD-----CTVKVWDPRKKN---QAVSM--N-NTYQVTSV 495 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D-----g~I~vwD~~~~~---~~~~~--~-~~~~v~sv 495 (2435)
..+.+||+.+++....-............. .+..+++.|+.+ ..+.+||+.+.. ..... . .......+
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 368889988776443211111111111111 234677777765 458899988766 32221 1 11222233
Q ss_pred EECCCCCEEEEEecC-----CeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 496 AFNDTAECVLTGGID-----NDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d-----g~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
.+ ++++++.|+.+ ..+.+||..+.+-.. .+......-..+.+ +++.++.|+.+ ..+.+||+...
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 33 56777777654 468999988765432 22211111222222 67777777765 45788887642
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCC
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~ 636 (2435)
.-......... ......+. .++++++.|+.+ ..+.+||..+.+-... +......-.++.+ +++
T Consensus 186 -----~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 255 (301)
T 2vpj_A 186 -----HWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGR 255 (301)
T ss_dssp -----EEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE
T ss_pred -----cEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCE
Confidence 11111111100 01112222 267777888764 4689999987754332 2111111122222 566
Q ss_pred EEEEEECCC-----cEEEecCC
Q psy4869 637 IIMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 637 ~Lasgs~Dg-----~I~vWd~~ 653 (2435)
+++.|+.++ .+.+||+.
T Consensus 256 i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 256 LYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEEECCBCSSSBEEEEEEEETT
T ss_pred EEEEcCcCCCcccccEEEEcCC
Confidence 777777653 35555554
No 364
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.90 E-value=1.1 Score=55.41 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=97.0
Q ss_pred cEEEEEECCCCCEEEEE------------ecCCeEEEEECCC--CcEE-EEEec-----CCCCEEEEEEcC--CCC-EEE
Q psy4869 491 QVTSVAFNDTAECVLTG------------GIDNDIKMWDLRT--NSVV-QKLRG-----HSDTVTGLSLSP--DGS-YIL 547 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sg------------s~dg~V~lwD~~s--~~~v-~~l~~-----h~~~V~~i~~sp--dg~-~la 547 (2435)
....+.+.|+|..+++. ..+|.|.++|..+ .+.. -.+.+ ..-....|.+.+ +|. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677776544443 2689999999874 3321 12222 224678888866 454 344
Q ss_pred EEE-C--CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecC-----------------CCeEEE
Q psy4869 548 SNA-M--DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA-----------------DKCVYI 607 (2435)
Q Consensus 548 s~s-~--Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~-----------------Dg~V~i 607 (2435)
.+. . +.+|.+|++.........+..+.+.. -.....+.+.++|++.++... .|.|..
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~---~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL---LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT---CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC---CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 443 3 67889998875322223344444432 246788999999998887651 255666
Q ss_pred EECCCCcEEEEecCCCCCeeEEEEcCCCCEEEEEE-CCCcEEEecCC
Q psy4869 608 WDTTTRRIAYKLPGHNGSVNDVQFHPKEPIIMSAS-SDKTIYLGESP 653 (2435)
Q Consensus 608 wd~~s~~~~~~l~~h~~~V~~l~fspd~~~Lasgs-~Dg~I~vWd~~ 653 (2435)
+|.. +. ..+...-...+.++|+||++.|+.+. ..+.|+.|+++
T Consensus 208 ~d~~--~~-~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 208 YSPN--DV-RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp ECTT--CC-EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EECC--eE-EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 6653 32 22223345679999999999777665 56889999886
No 365
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.89 E-value=3.8 Score=50.83 Aligned_cols=233 Identities=11% Similarity=0.142 Sum_probs=122.6
Q ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEecCCcee-eEEEe----eCCCCCeeEEEEccC---CCEEEEEeC--------CC
Q psy4869 364 EIFCSKYHPDGQYIASSGYDRQIFIWSVYGECE-NIGVM----SGHTGAVMDLKFSTD---GCHIFTCST--------DQ 427 (2435)
Q Consensus 364 ~V~~l~fspdg~~Lasgs~Dg~I~iwd~~~~~~-~~~~l----~~h~~~V~~l~~s~d---g~~L~s~s~--------Dg 427 (2435)
.-..|+|.|+|++|+.+...|+|++++..+... .+..+ ....+....|+|+|+ +..|+.+.. ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 346899999999344556789999998543221 11111 112346789999996 555555432 23
Q ss_pred eEEEEECCCC--c--eEEE-Eec------cCccccccCcccCCCeEEEEEeC------------CCeEEEEeCCCC----
Q psy4869 428 TLAVWDLEKG--Q--RIKK-MKG------HSTFVNSCDPVRRGQLLIASGSD------------DCTVKVWDPRKK---- 480 (2435)
Q Consensus 428 ~I~vwd~~tg--~--~v~~-l~~------h~~~v~sv~~~~~~~~llasgs~------------Dg~I~vwD~~~~---- 480 (2435)
.|..|++..+ + .... +.. .......+.|.|++..++..|.. .+.|.-+|....
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~ 178 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDD 178 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTT
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCC
Confidence 5666666432 1 1111 111 11234678899988444444332 246666666532
Q ss_pred ----------cceEeecCcccEEEEEECCCCCEEEEEecCC----eEEEEECCCC-------------------------
Q psy4869 481 ----------NQAVSMNNTYQVTSVAFNDTAECVLTGGIDN----DIKMWDLRTN------------------------- 521 (2435)
Q Consensus 481 ----------~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg----~V~lwD~~s~------------------------- 521 (2435)
..+.... ......++|+|....|.++.... .|.+ +..+
T Consensus 179 npf~~~~~~~~~i~a~G-~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~--i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 179 NPFIKESGVRAEIWSYG-IRNPQGMAMNPWSNALWLNEHGPRGGDEINI--PQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTTTSTTSCTTEEEEC-CSEEEEEEEETTTTEEEEEEECSBSCEEEEC--CCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCcCCCCCCccEEEEc-CcCccceEEECCCCCEEEEecCCCCCcEEeE--eccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1122222 23467899999433444443321 2222 1111
Q ss_pred ------cEEEEEecCCCCEEEEEEcC-------CCCEEEEEECCCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEE
Q psy4869 522 ------SVVQKLRGHSDTVTGLSLSP-------DGSYILSNAMDNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCA 588 (2435)
Q Consensus 522 ------~~v~~l~~h~~~V~~i~~sp-------dg~~las~s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~ 588 (2435)
.++..+. |......+.|.. +|.++++.-..+.|...++.. .+.+....-. ......+..++
T Consensus 256 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~----~~~~~~~~~~-~~~~~rp~~v~ 329 (353)
T 2g8s_A 256 IVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNG----DKVTEDGRIL-TDRGQRIRDVR 329 (353)
T ss_dssp SCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEET----TEEEEEEEES-GGGCCCEEEEE
T ss_pred CCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCC----CeEeeeEEcc-cCCCCceeEEE
Confidence 1122233 234567788864 466666666677787777762 2222211100 01123678899
Q ss_pred EcCCCCEEEEec-CCCeE
Q psy4869 589 WSVSGLYVTAGS-ADKCV 605 (2435)
Q Consensus 589 ~spdg~~Lasgs-~Dg~V 605 (2435)
+.|||.++++.. .+|.|
T Consensus 330 ~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 330 TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp ECTTSCEEEEECSTTEEE
T ss_pred ECCCCcEEEEEeCCCCEE
Confidence 999998666432 34443
No 366
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.47 E-value=2.5 Score=50.90 Aligned_cols=213 Identities=12% Similarity=0.081 Sum_probs=106.2
Q ss_pred CcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeCC-----CeEEEEEccCCc---e--eecccccccceeEE
Q psy4869 906 SQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTKD-----GRLLIVDIGAGE---I--LEDIPAHSQELWSV 973 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~d-----g~V~vwd~~sg~---~--v~~~~~h~~~V~sv 973 (2435)
+.+.+||..+.+.... ++.+..-.+++ ..+++.++.|+.+ ..+.+||+.+++ - +..++..... .++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeE
Confidence 5788999887654322 22221111222 2466666776643 468999988766 2 2222211111 122
Q ss_pred EEecCCCCCCCcCCcceEEEEEeCCC-----eEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEE
Q psy4869 974 AMLPDQFNPNVYLPLQIQVVTGGGDK-----SVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARV 1048 (2435)
Q Consensus 974 ~~s~d~~~~~~~~p~~~~l~sgs~Dg-----~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~ 1048 (2435)
+.. ++ ..++.|+.++ .+.++|.....+... .... .......++.+
T Consensus 109 ~~~-~~----------~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~------------------~~~p-~~r~~~~~~~~ 158 (301)
T 2vpj_A 109 TTL-GD----------MIYVSGGFDGSRRHTSMERYDPNIDQWSML------------------GDMQ-TAREGAGLVVA 158 (301)
T ss_dssp EEE-TT----------EEEEECCBCSSCBCCEEEEEETTTTEEEEE------------------EECS-SCCBSCEEEEE
T ss_pred EEE-CC----------EEEEEcccCCCcccceEEEEcCCCCeEEEC------------------CCCC-CCcccceEEEE
Confidence 222 22 3566666543 455666543322110 0000 01111122222
Q ss_pred cCCCCEEEEEECC-----CcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEEccCCce
Q psy4869 1049 SPDSKLLAVSLLD-----TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGDC 1116 (2435)
Q Consensus 1049 spdg~~Lavg~~d-----g~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-----g~I~vWd~~t~~~ 1116 (2435)
++++++.|+.+ ..+.+||..+.+-... +.........+.+ ++++++.|+.+ ..+.+||+++.+-
T Consensus 159 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 --SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp --TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred --CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 67777777654 4688899876544332 2111111222222 56777777764 4689999987754
Q ss_pred eEEE--eccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1117 HKSL--LAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1117 ~~~l--~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
...- .........+.+ +++.++.|+.+ ..+.+||..+.
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 3321 111222223333 56777777765 35778888764
No 367
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.39 E-value=1.6 Score=52.66 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=58.0
Q ss_pred CcceeEEeecC-------CeEEEEEcccceEEEE--ecCCCCCeEEEEEecCCCEEEEEeCC-----CcEEEEeCCCCce
Q psy4869 1325 DSKLLAVSLLD-------TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYGDC 1390 (2435)
Q Consensus 1325 dg~~lavgs~d-------G~V~v~d~~~~k~i~~--~~~h~~~V~~la~spdg~~L~sGg~D-----g~V~iwdl~~gk~ 1390 (2435)
+++.++.|+.+ ..+.+||+.+.+.... +.........+ .-++++++.||.+ ..+.+||..+.+-
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 232 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAW 232 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCE
Confidence 56677776542 3578888877553322 22211111222 2378888888875 4689999987653
Q ss_pred EEE--ecccccceEEEEEeeCCCEEEEEeCCC-----cEEEEECCCc
Q psy4869 1391 HKS--LLAHEDSVTGVTFVPKTHYFFTTSKDG-----RVKQWDADNF 1430 (2435)
Q Consensus 1391 ~~~--~~~h~~~V~~laf~P~~~~laSgg~Dg-----~V~lWd~~~~ 1430 (2435)
... +......-..+.+ ++.+++.||.++ .|.+||+.+.
T Consensus 233 ~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 233 RQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred eeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 322 1111111222222 677888888664 4788888764
No 368
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.29 E-value=2.5 Score=51.06 Aligned_cols=212 Identities=15% Similarity=0.177 Sum_probs=104.8
Q ss_pred CeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCC-----eEEEEeCCCCcceEeec---CcccEEEEEEC
Q psy4869 427 QTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDC-----TVKVWDPRKKNQAVSMN---NTYQVTSVAFN 498 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg-----~I~vwD~~~~~~~~~~~---~~~~v~sv~~s 498 (2435)
..+.+||+.+++....-........... ...+..+++.|+.++ .+.+||+.+.+...... .......+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGM-VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceE-EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-
Confidence 3578888887764332111111111111 112446777777553 58889987765333221 1112222333
Q ss_pred CCCCEEEEEecCC-----eEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-------CcEEEEEcCCCC
Q psy4869 499 DTAECVLTGGIDN-----DIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMD-------NTVRIWDIRPYV 564 (2435)
Q Consensus 499 p~g~~l~sgs~dg-----~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~D-------g~I~lWdl~~~~ 564 (2435)
++++++.|+.++ .+.+||..+.+-... +.........+.+ +++.++.|+.+ ..+.+||+...
T Consensus 108 -~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~- 183 (302)
T 2xn4_A 108 -NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN- 183 (302)
T ss_dssp -TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT-
T ss_pred -CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC-
Confidence 567777787653 588999887754332 2111111122222 56666666643 34788888632
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCCE
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEPI 637 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~~ 637 (2435)
+ -......... ......+. .++++++.|+.+ ..+.+||..+.+-... +......- +++. -++.+
T Consensus 184 ---~-W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~-~~~~i 254 (302)
T 2xn4_A 184 ---E-WTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCA-VNGLL 254 (302)
T ss_dssp ---E-EEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEE
T ss_pred ---c-EEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEE-ECCEE
Confidence 1 1111111100 01112222 267888888764 3689999987754322 21111111 1222 25667
Q ss_pred EEEEECCC-----cEEEecCC
Q psy4869 638 IMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 638 Lasgs~Dg-----~I~vWd~~ 653 (2435)
++.|+.++ .+.+||+.
T Consensus 255 ~v~GG~~~~~~~~~v~~yd~~ 275 (302)
T 2xn4_A 255 YVVGGDDGSCNLASVEYYNPT 275 (302)
T ss_dssp EEECCBCSSSBCCCEEEEETT
T ss_pred EEECCcCCCcccccEEEEcCC
Confidence 77777654 35666654
No 369
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=94.12 E-value=0.0088 Score=86.80 Aligned_cols=47 Identities=15% Similarity=0.312 Sum_probs=31.0
Q ss_pred eecccchhhhheeeeeechhhh-HHHHHhHhhhhcCC------CceEEEeeeeee
Q psy4869 1625 KKFLFSSELEEVLLVLSLSQVT-DLLTHLSSLLDSSH------HRCELVIRVAVF 1672 (2435)
Q Consensus 1625 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~ 1672 (2435)
..++.++++.|.+-+|=.+++- -|++-+..++...+ | ++|++++..+
T Consensus 1324 ~~rt~SNdI~eI~~vlGIEAAR~~Ii~Ei~~V~~~~Gi~Vd~RH-l~LlaD~MT~ 1377 (1733)
T 1twf_A 1324 PTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRH-MALLVDVMTT 1377 (1733)
T ss_dssp TTTCBCSCHHHHHHHHCHHHHHHHHHHHHHHHHHTTTCCCCHHH-HHHHHHHTTT
T ss_pred cccceeccHHHHHHHhhHHHHHHHHHHHHHHHHhhcCccccchh-hhhhhhhhcc
Confidence 4567788898988888888554 45555665555332 3 6777776654
No 370
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.64 E-value=3.5 Score=49.77 Aligned_cols=220 Identities=11% Similarity=0.048 Sum_probs=111.3
Q ss_pred EEEEEeC--CCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCC----CeEEEEeCCCCcceEee--c-Cc
Q psy4869 419 HIFTCST--DQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDD----CTVKVWDPRKKNQAVSM--N-NT 489 (2435)
Q Consensus 419 ~L~s~s~--Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~D----g~I~vwD~~~~~~~~~~--~-~~ 489 (2435)
.++.|+. ...+.+||..+++....-............. .+..+++.|+.+ ..+.+||+.+......- . ..
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 92 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR 92 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc
Confidence 4445554 3578999998876543211111111111111 244677777765 56888998876543322 1 11
Q ss_pred ccEEEEEECCCCCEEEEEecC------CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEEC---------C
Q psy4869 490 YQVTSVAFNDTAECVLTGGID------NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAM---------D 552 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~d------g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~---------D 552 (2435)
.....+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++.++.|+. -
T Consensus 93 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 93 DSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp BSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEEC
T ss_pred cceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccccc
Confidence 12222333 56777777765 4689999988754332 2111111122222 5666666654 3
Q ss_pred CcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEE--EecCCCCC
Q psy4869 553 NTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAY--KLPGHNGS 625 (2435)
Q Consensus 553 g~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~--~l~~h~~~ 625 (2435)
..+.+||+... .-......... ......+.+ ++++++.|+.+ ..+.+||..+.+-.. .+......
T Consensus 169 ~~~~~yd~~~~-----~W~~~~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 240 (306)
T 3ii7_A 169 NSCEVYDPATE-----TWTELCPMIEA-RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVT 240 (306)
T ss_dssp CCEEEEETTTT-----EEEEECCCSSC-CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSC
T ss_pred ceEEEeCCCCC-----eEEECCCccch-hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccc
Confidence 44788888642 11122111100 011122222 67777887754 468899998765322 22222222
Q ss_pred eeEEEEcCCCCEEEEEECCC-----cEEEecCC
Q psy4869 626 VNDVQFHPKEPIIMSASSDK-----TIYLGESP 653 (2435)
Q Consensus 626 V~~l~fspd~~~Lasgs~Dg-----~I~vWd~~ 653 (2435)
..++.+ ++.+++.|+.++ .+.+||+.
T Consensus 241 ~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~ 271 (306)
T 3ii7_A 241 VKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE 271 (306)
T ss_dssp CEEEEE--TTEEEEEECBCSSSBCCEEEEEETT
T ss_pred eeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC
Confidence 223333 566788887553 45566654
No 371
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.43 E-value=4 Score=49.27 Aligned_cols=212 Identities=7% Similarity=0.051 Sum_probs=106.7
Q ss_pred CcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeCC----CeEEEEEccCCcee--ecccccccceeEEEEec
Q psy4869 906 SQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTKD----GRLLIVDIGAGEIL--EDIPAHSQELWSVAMLP 977 (2435)
Q Consensus 906 ~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~d----g~V~vwd~~sg~~v--~~~~~h~~~V~sv~~s~ 977 (2435)
+.+.+||..+.+.... ++.+..-.+++ .-+++.++.|+.+ ..+.+||+.+++-. ..++..... .+++..
T Consensus 24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~- 100 (306)
T 3ii7_A 24 QSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS-LAACAA- 100 (306)
T ss_dssp TSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS-CEEEEE-
T ss_pred ceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc-eeEEEE-
Confidence 6899999887654422 22222111222 2366777777644 67889999887632 222211111 122222
Q ss_pred CCCCCCCcCCcceEEEEEeCC------CeEEEEEcccccccccccccccccccccceeeeeeccccccC-CCEEEEEEcC
Q psy4869 978 DQFNPNVYLPLQIQVVTGGGD------KSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLE-EQVLCARVSP 1050 (2435)
Q Consensus 978 d~~~~~~~~p~~~~l~sgs~D------g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~v~~l~~sp 1050 (2435)
++ ..++.|+.+ ..+.+||.....+... .. .... ....++. -
T Consensus 101 ~~----------~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~------------------~~--~p~~r~~~~~~~--~ 148 (306)
T 3ii7_A 101 EG----------KIYTSGGSEVGNSALYLFECYDTRTESWHTK------------------PS--MLTQRCSHGMVE--A 148 (306)
T ss_dssp TT----------EEEEECCBBTTBSCCCCEEEEETTTTEEEEE------------------CC--CSSCCBSCEEEE--E
T ss_pred CC----------EEEEECCCCCCCcEeeeEEEEeCCCCceEeC------------------CC--CcCCcceeEEEE--E
Confidence 22 366666654 3466666543332110 00 0011 1111222 2
Q ss_pred CCCEEEEEEC---------CCcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEEccCC
Q psy4869 1051 DSKLLAVSLL---------DTTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-----RTVKVWGLDYG 1114 (2435)
Q Consensus 1051 dg~~Lavg~~---------dg~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-----g~I~vWd~~t~ 1114 (2435)
++++++.|+. -..+.+||..+.+-... +......-..+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 149 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 6677777753 34588899876543322 2111111122222 56677776653 35888998776
Q ss_pred ceeEE--EeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1115 DCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1115 ~~~~~--l~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
+-... +.........+.+ ++++++.|+.+ ..+.+||..+.
T Consensus 227 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 227 EWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred cEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 43221 1111222233333 67778888754 56888998764
No 372
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.39 E-value=15 Score=47.26 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=86.6
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEE--EEec------cCccccccCcccC---CCeEEEEEeC------
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIK--KMKG------HSTFVNSCDPVRR---GQLLIASGSD------ 468 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~--~l~~------h~~~v~sv~~~~~---~~~llasgs~------ 468 (2435)
...+.|+|.|||+++++-...+.|++++..+++... .+.. ....+..+++.|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999999866655444578888866565322 2221 1233457888885 5555555442
Q ss_pred ------CCeEEEEeCCCC-------cceEe-ec--CcccEEEEEECCCCCEEEEEecC----------------------
Q psy4869 469 ------DCTVKVWDPRKK-------NQAVS-MN--NTYQVTSVAFNDTAECVLTGGID---------------------- 510 (2435)
Q Consensus 469 ------Dg~I~vwD~~~~-------~~~~~-~~--~~~~v~sv~~sp~g~~l~sgs~d---------------------- 510 (2435)
...|.-|+.... +.+.. +. ..+....|+|.|||.+.++.+..
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~ 186 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQE 186 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHH
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccccccccccccc
Confidence 234555554321 11111 21 23457899999999877764431
Q ss_pred ----------CeEEEEECCCCc----------EEEEE-ecCCCCEEEEEEcCCCCEEEE-EECCCcEEEEEcC
Q psy4869 511 ----------NDIKMWDLRTNS----------VVQKL-RGHSDTVTGLSLSPDGSYILS-NAMDNTVRIWDIR 561 (2435)
Q Consensus 511 ----------g~V~lwD~~s~~----------~v~~l-~~h~~~V~~i~~spdg~~las-~s~Dg~I~lWdl~ 561 (2435)
|.|.-++....- ....+ .+|. ....++|+|+|.+.++ .+.|+--.|.-+.
T Consensus 187 ~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 187 LNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp HHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 445555543220 11112 2443 4678999998876665 3345555555444
No 373
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.27 E-value=2.2 Score=53.14 Aligned_cols=158 Identities=9% Similarity=0.073 Sum_probs=100.6
Q ss_pred EEecCCCcEEEEecCCcEEEEeCCCCceeEEEeCC----C-eEEEEEEecCCCEEEEEeCCCeEEEEEccCCce------
Q psy4869 891 LAFSSDNLALVSACASQVKIWNRPSLSCLRTIDTG----S-YALSVCFVPGDRHVLVGTKDGRLLIVDIGAGEI------ 959 (2435)
Q Consensus 891 la~s~dg~~la~g~~~~V~Iwd~~~~~~~~~l~~~----~-~v~~vafspdg~~Lavg~~dg~V~vwd~~sg~~------ 959 (2435)
...+.+|..|+.+.++.|+.-++.....-..+..+ . .+..+..+|+|++||+-+ +..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence 34556888888999999998887754444444443 2 466799999999999874 45788877764321
Q ss_pred ------eecccc------cccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccc
Q psy4869 960 ------LEDIPA------HSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHK 1027 (2435)
Q Consensus 960 ------v~~~~~------h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~ 1027 (2435)
.+.+.. ...+|..+.|+|-+ ..+..|++-..|+.||+|++.... +... .+.....
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~-------~~ds~LVVLtsD~~Ir~yDl~~s~-----~~P~-~L~k~~~ 171 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS-------YRDSCIVVLKEDDTITMFDILNSQ-----EKPI-VLNKPNN 171 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTB-------GGGCEEEEEETTSCEEEEETTCTT-----SCCE-EESCCCS
T ss_pred cccccceeEEEcCCcccCCCCceeEEEecccc-------CCCCeEEEEecCCEEEEEEcccCC-----CCCc-chhcccc
Confidence 111211 24579999999987 345689999999999999986411 0001 1110000
Q ss_pred eeeeeeccccccCCCEEEEEEcCCCCEEEEEE--CCCcEEEE
Q psy4869 1028 VLSLLHTRTLKLEEQVLCARVSPDSKLLAVSL--LDTTVKIF 1067 (2435)
Q Consensus 1028 ~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~--~dg~V~i~ 1067 (2435)
... .-.....|.+++|..+|=.|.+.+ .+|.|+-.
T Consensus 172 ~fg-----~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 172 SFG-----LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEE-----SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ccC-----CCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 000 011226788999999877677655 55655433
No 374
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.15 E-value=4.1 Score=49.45 Aligned_cols=179 Identities=10% Similarity=0.039 Sum_probs=90.7
Q ss_pred EEEEeCCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC-----C------CeEEEEECCCCceEEEEec
Q psy4869 377 IASSGYDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST-----D------QTLAVWDLEKGQRIKKMKG 445 (2435)
Q Consensus 377 Lasgs~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~-----D------g~I~vwd~~tg~~v~~l~~ 445 (2435)
++.|+ ..+.+||.....=....+..............++..++.|+. . ..+.+||..+++....-..
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~ 85 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence 34444 568888876543222222222223333333457777788773 1 1378899888765332111
Q ss_pred cCccccccCcccCCCeEEEEEeCC--------CeEEEEeCCCCcceEee--cC-cccEEEEEECCCCCEEEEEec-----
Q psy4869 446 HSTFVNSCDPVRRGQLLIASGSDD--------CTVKVWDPRKKNQAVSM--NN-TYQVTSVAFNDTAECVLTGGI----- 509 (2435)
Q Consensus 446 h~~~v~sv~~~~~~~~llasgs~D--------g~I~vwD~~~~~~~~~~--~~-~~~v~sv~~sp~g~~l~sgs~----- 509 (2435)
....... .....+..+++.|+.+ ..+.+||+.+.+-.... .. ......+. -++++++.|+.
T Consensus 86 p~~r~~~-~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 86 PSPRCLF-GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRK 162 (315)
T ss_dssp SSCEESC-EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSC
T ss_pred Ccchhce-eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCc
Confidence 1111110 0111244666777742 45888998876432221 11 11122222 35667777776
Q ss_pred -CCeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCC
Q psy4869 510 -DNDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN-----TVRIWDIRP 562 (2435)
Q Consensus 510 -dg~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg-----~I~lWdl~~ 562 (2435)
-..+.+||..+.+-... +......-.++.+ +++.++.|+.++ .+.+||+..
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 24689999987654321 1111111122222 677777887654 477888763
No 375
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.06 E-value=2 Score=53.44 Aligned_cols=104 Identities=15% Similarity=0.198 Sum_probs=69.1
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEECCCCc------------EEEEEec------CCCCEEEEEEcCC---CCEEEEE
Q psy4869 491 QVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS------------VVQKLRG------HSDTVTGLSLSPD---GSYILSN 549 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~------------~v~~l~~------h~~~V~~i~~spd---g~~las~ 549 (2435)
.+..+..+|+|++||..+ +..|.|..+..+. ..+.+.- ...+|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 577799999999999886 5588888887321 1223321 3578999999994 6789999
Q ss_pred ECCCcEEEEEcCCCCCCCceEEEEeCccc-----ccccCeEEEEEcCCCCEEEE
Q psy4869 550 AMDNTVRIWDIRPYVPGERCVKVMSGHQH-----NFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 550 s~Dg~I~lWdl~~~~~~~~~v~~~~~h~~-----~~~~~i~~v~~spdg~~Las 598 (2435)
..|++||+||+.... .++. .+..... .....+.+++|..+|-.|..
T Consensus 146 tsD~~Ir~yDl~~s~--~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv 196 (452)
T 3pbp_A 146 KEDDTITMFDILNSQ--EKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYC 196 (452)
T ss_dssp ETTSCEEEEETTCTT--SCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred ecCCEEEEEEcccCC--CCCc-chhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence 999999999998522 2222 3321111 11146778888875543333
No 376
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.02 E-value=1.1 Score=54.93 Aligned_cols=189 Identities=10% Similarity=-0.013 Sum_probs=105.8
Q ss_pred CEEEEEECCCcEEEEEccCCceeEEEecc-CCCEEEEEEc--cCCCEEEEE--eCCCcEEEEeCCCcceeEEEEEEEeec
Q psy4869 1095 TLIATGSGDRTVKVWGLDYGDCHKSLLAH-EDSVTGVTFV--PKTHYFFTT--SKDGRVKQWDADNFERIVTLHFFISLY 1169 (2435)
Q Consensus 1095 ~~L~Sgs~Dg~I~vWd~~t~~~~~~l~~h-~~~V~~v~fs--p~~~~l~s~--s~Dg~V~iwD~~~~~~~~~~~~~~~~~ 1169 (2435)
.+++.++.||.|.-+|.++|+.+..+... ..++....-. +.+..++.. ..||.|..++..++.....+... ..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~--~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR--QL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH--HH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc--cc
Confidence 46888999999999999999999988754 1222221100 112234443 58999999999887554433210 00
Q ss_pred ccccCeEE---EEE-----eCCCCEEEEEeCCCcEEEEEccCCceeeEeeccC--CC-----EEEEEEe-----eCCCEE
Q psy4869 1170 GHKLPVLS---LDM-----SYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHE--DS-----VTGVTFV-----PKTHYF 1229 (2435)
Q Consensus 1170 ~h~~~V~~---l~~-----s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~--~~-----V~~i~~s-----pd~~~l 1229 (2435)
....++.. ..+ ...+..+++|+.+|.+...|+++|+.+..+.... .. ..|.... ..+..|
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 11222221 000 0145688999999999999999999988875321 10 1111111 123567
Q ss_pred EEEECCCcEEEEECCCCceEEEEee---CCcccc---------cCceEEEEEECCCeEEEEEcccccccc
Q psy4869 1230 FTTSKDGRVKQWDADNFERIVTLHF---NPNVYL---------PLQIQVVTGGGDKSVKLWQLELVSVNR 1287 (2435)
Q Consensus 1230 vsgs~Dg~I~vwD~~~~~~v~~~~~---~~~~~~---------~~~~~lv~g~~d~~v~iwdl~~~~~~~ 1287 (2435)
+.+..+..+.+.+ ++++ +..... ...... .....++.+..|+.|..+|........
T Consensus 169 ~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred EEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence 7777777766665 3332 211110 000000 011234668889999999887655544
No 377
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=92.21 E-value=3 Score=50.77 Aligned_cols=202 Identities=10% Similarity=0.027 Sum_probs=98.5
Q ss_pred CeEEEEECCCCceEEEEec--cCccccccCcccCCCeEEEEEeC-----C------CeEEEEeCCCCcceEee--cC-cc
Q psy4869 427 QTLAVWDLEKGQRIKKMKG--HSTFVNSCDPVRRGQLLIASGSD-----D------CTVKVWDPRKKNQAVSM--NN-TY 490 (2435)
Q Consensus 427 g~I~vwd~~tg~~v~~l~~--h~~~v~sv~~~~~~~~llasgs~-----D------g~I~vwD~~~~~~~~~~--~~-~~ 490 (2435)
..+.+||..+++... ... ............ +..+++.|+. . ..+..||+.+.+....- .. ..
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 578999998887643 221 111111111122 3456666663 1 12778888776532221 11 11
Q ss_pred cEEEEEECCCCCEEEEEecC--------CeEEEEECCCCcEEE--EEecCCCCEEEEEEcCCCCEEEEEEC-C-----Cc
Q psy4869 491 QVTSVAFNDTAECVLTGGID--------NDIKMWDLRTNSVVQ--KLRGHSDTVTGLSLSPDGSYILSNAM-D-----NT 554 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~d--------g~V~lwD~~s~~~v~--~l~~h~~~V~~i~~spdg~~las~s~-D-----g~ 554 (2435)
....+.+ +++.++.|+.+ ..+.+||..+.+-.. .+......-..+. -+++.++.|+. + ..
T Consensus 91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 166 (315)
T 4asc_A 91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNK 166 (315)
T ss_dssp SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCC
T ss_pred ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccce
Confidence 1222222 56667777642 458999998875322 1111111112222 35667777776 2 46
Q ss_pred EEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCC-----eEEEEECCCCcEEEE--ecCCCCCee
Q psy4869 555 VRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADK-----CVYIWDTTTRRIAYK--LPGHNGSVN 627 (2435)
Q Consensus 555 I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg-----~V~iwd~~s~~~~~~--l~~h~~~V~ 627 (2435)
+.+||+... .-......... ......+. -++++++.|+.++ .+.+||..+.+-... +......-.
T Consensus 167 ~~~yd~~~~-----~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 238 (315)
T 4asc_A 167 MCVYDPKKF-----EWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS 238 (315)
T ss_dssp EEEEETTTT-----EEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred EEEEeCCCC-----eEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence 888887642 11111111000 01112222 2677888887654 588999987754332 111111112
Q ss_pred EEEEcCCCCEEEEEECC
Q psy4869 628 DVQFHPKEPIIMSASSD 644 (2435)
Q Consensus 628 ~l~fspd~~~Lasgs~D 644 (2435)
.+.+ ++++++.|+.+
T Consensus 239 ~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 239 LVSL--VGTLYAIGGFA 253 (315)
T ss_dssp EEEE--TTEEEEEEEEE
T ss_pred EEEE--CCEEEEECCcc
Confidence 2222 55677777764
No 378
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.21 E-value=24 Score=45.43 Aligned_cols=90 Identities=16% Similarity=0.292 Sum_probs=62.6
Q ss_pred EEEEECCCcEEEEEcCCCeEEEEEecCC-------------------------cCE--EEEEEc---CCCCEEEEEEC-C
Q psy4869 1055 LAVSLLDTTVKIFFLDTFKFFISLYGHK-------------------------LPV--LSLDMS---YDSTLIATGSG-D 1103 (2435)
Q Consensus 1055 Lavg~~dg~V~i~d~~~~~~~~~l~~h~-------------------------~~V--~sl~~s---pdg~~L~Sgs~-D 1103 (2435)
+.+|+..|.|+||-+.+++.+..+.... +.. -.+++. .||++|+.-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5567778999999999998888763110 001 122332 26788887764 6
Q ss_pred CcEEEEEccCCceeEEEec-cCCCEEEEEEc--cCCCEEEEEeC
Q psy4869 1104 RTVKVWGLDYGDCHKSLLA-HEDSVTGVTFV--PKTHYFFTTSK 1144 (2435)
Q Consensus 1104 g~I~vWd~~t~~~~~~l~~-h~~~V~~v~fs--p~~~~l~s~s~ 1144 (2435)
.+|-..+++..++-+.+.. ....+..++|. |+..++++++.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e 196 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAE 196 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEEC
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecce
Confidence 7788888888888777754 55678888887 67888888765
No 379
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.02 E-value=4.6 Score=48.83 Aligned_cols=203 Identities=12% Similarity=0.162 Sum_probs=99.4
Q ss_pred eEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeC----C-----CeEEEEeCCCCcceEee--c-CcccEEEE
Q psy4869 428 TLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSD----D-----CTVKVWDPRKKNQAVSM--N-NTYQVTSV 495 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~----D-----g~I~vwD~~~~~~~~~~--~-~~~~v~sv 495 (2435)
.+.+||..+++....-........... ...+..+++.|+. + ..+.+||+.+.+..... . .......+
T Consensus 40 ~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 118 (308)
T 1zgk_A 40 YLEAYNPSNGTWLRLADLQVPRSGLAG-CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 118 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEE-EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred eEEEEcCCCCeEeECCCCCcccccceE-EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEE
Confidence 578888877765432111111111111 1123466677765 2 35788888766533221 1 11222233
Q ss_pred EECCCCCEEEEEecC-----CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCC
Q psy4869 496 AFNDTAECVLTGGID-----NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMD-----NTVRIWDIRPY 563 (2435)
Q Consensus 496 ~~sp~g~~l~sgs~d-----g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~D-----g~I~lWdl~~~ 563 (2435)
.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+.+ +++.++.|+.+ ..+.+||+...
T Consensus 119 ~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 119 VI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 33 56777777643 4688999987654322 1111111222333 56777777754 45788887632
Q ss_pred CCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEEE--ecCCCCCeeEEEEcCCCC
Q psy4869 564 VPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAYK--LPGHNGSVNDVQFHPKEP 636 (2435)
Q Consensus 564 ~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~~--l~~h~~~V~~l~fspd~~ 636 (2435)
.-........ .......+.+ ++++++.|+.+ ..+.+||+.+.+-... +......- +++. -+++
T Consensus 195 -----~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~ 264 (308)
T 1zgk_A 195 -----EWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGR 264 (308)
T ss_dssp -----EEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTE
T ss_pred -----eEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCE
Confidence 1111111100 0011122222 67788888765 5699999987754322 21111111 2222 2566
Q ss_pred EEEEEECCC
Q psy4869 637 IIMSASSDK 645 (2435)
Q Consensus 637 ~Lasgs~Dg 645 (2435)
+++.|+.++
T Consensus 265 i~v~GG~~~ 273 (308)
T 1zgk_A 265 IYVLGGYDG 273 (308)
T ss_dssp EEEECCBCS
T ss_pred EEEEcCcCC
Confidence 777777553
No 380
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.94 E-value=27 Score=42.08 Aligned_cols=208 Identities=8% Similarity=0.051 Sum_probs=113.0
Q ss_pred CCCCEEEEEe--CCCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCC--------------CeEEEEECC
Q psy4869 372 PDGQYIASSG--YDRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTD--------------QTLAVWDLE 435 (2435)
Q Consensus 372 pdg~~Lasgs--~Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~D--------------g~I~vwd~~ 435 (2435)
.+|.+|+-.. .++.|...+..+.... .+.. ..+ --++++|.+|+-+... ..|+..+++
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~--~l~~--~~~--~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNIH--KLSN--DTA--MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSCE--EEEE--EEE--EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCCE--EccC--Cce--eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 4566666554 3566666665543221 1111 112 2346788888776542 468888887
Q ss_pred CCceEEEEeccCccccccCcccCCCeEEEEE---eCCCeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEec-CC
Q psy4869 436 KGQRIKKMKGHSTFVNSCDPVRRGQLLIASG---SDDCTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGGI-DN 511 (2435)
Q Consensus 436 tg~~v~~l~~h~~~v~sv~~~~~~~~llasg---s~Dg~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs~-dg 511 (2435)
.++........ ...+.+.+..+..+- ..+..|...++..........+.. .+++++++.|+-.+. ..
T Consensus 97 g~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 97 GHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp SCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 66543322221 124556776666554 344556666666444332223222 457788998887665 67
Q ss_pred eEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCC--cEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 512 DIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDN--TVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 512 ~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg--~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
.|++.++..+.....+. +... ..+.|++.+|+-...++ .|..-++. +.....+... .+ ..|
T Consensus 168 ~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld-----G~~~~~Lt~~------~~--~~~ 230 (302)
T 3s25_A 168 QLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN-----NPNPVVLTEA------NI--EHY 230 (302)
T ss_dssp CEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS-----SCCCEECSCS------CE--EEE
T ss_pred eEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC-----CCCeEEEeCC------Cc--ceE
Confidence 89999987765443333 2232 34669999888665443 34444443 2222223211 22 347
Q ss_pred cCCCCEEEEecC--CCeEEEEECC
Q psy4869 590 SVSGLYVTAGSA--DKCVYIWDTT 611 (2435)
Q Consensus 590 spdg~~Lasgs~--Dg~V~iwd~~ 611 (2435)
+|+|++|.-++. .+.|..-++.
T Consensus 231 ~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 231 NVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEETTEEEEEECSSSCEEEEEETT
T ss_pred EECCCEEEEEECCCCcEEEEEECC
Confidence 888888876532 3556666654
No 381
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.65 E-value=38 Score=43.31 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=62.6
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEccCCceeE--EEec------cCCCEEEEEEccC---CCEEEEEeC--------
Q psy4869 1084 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHK--SLLA------HEDSVTGVTFVPK---THYFFTTSK-------- 1144 (2435)
Q Consensus 1084 ~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t~~~~~--~l~~------h~~~V~~v~fsp~---~~~l~s~s~-------- 1144 (2435)
....|+|.|+|+++++-...+.|++++..+++... .+.. .......|+|+|+ +..|+++..
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 45799999999977754333478888866565322 2211 2456789999995 555555442
Q ss_pred -----CCcEEEEeCCCcc-eeEEEEEEEe-ec-ccccCeEEEEEeCCCCEEEEEe
Q psy4869 1145 -----DGRVKQWDADNFE-RIVTLHFFIS-LY-GHKLPVLSLDMSYDSTLIATGS 1191 (2435)
Q Consensus 1145 -----Dg~V~iwD~~~~~-~~~~~~~~~~-~~-~h~~~V~~l~~s~dg~~l~sgs 1191 (2435)
...|..|+..... .+.....+.. +. ........|+|.+||.++++.+
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2356666554321 1111111111 11 2234578999999998777654
No 382
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.19 E-value=4.5 Score=49.00 Aligned_cols=223 Identities=15% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCcEEEEec-----CCcEEEEeCCCCceeEE--EeCCCeEEEEEEecCCCEEEEEeC----C-----CeEEEEEccCCce
Q psy4869 896 DNLALVSAC-----ASQVKIWNRPSLSCLRT--IDTGSYALSVCFVPGDRHVLVGTK----D-----GRLLIVDIGAGEI 959 (2435)
Q Consensus 896 dg~~la~g~-----~~~V~Iwd~~~~~~~~~--l~~~~~v~~vafspdg~~Lavg~~----d-----g~V~vwd~~sg~~ 959 (2435)
++..++.|+ .+.+.+||..+.+.... ++.+..-.+++. .+++.++.|+. + ..+.+||+.+++-
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 445555554 16889999887654432 222222122232 36666666654 2 4688999887763
Q ss_pred ee--cccccccceeEEEEecCCCCCCCcCCcceEEEEEeCC-----CeEEEEEcccccccccccccccccccccceeeee
Q psy4869 960 LE--DIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGD-----KSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1032 (2435)
Q Consensus 960 v~--~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~D-----g~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 1032 (2435)
.. .++..... .+++.. ++ ..++.|+.+ ..+.++|.....+... .
T Consensus 103 ~~~~~~p~~r~~-~~~~~~-~~----------~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--------~--------- 153 (308)
T 1zgk_A 103 SPCAPMSVPRNR-IGVGVI-DG----------HIYAVGGSHGCIHHNSVERYEPERDEWHLV--------A--------- 153 (308)
T ss_dssp EECCCCSSCCBT-CEEEEE-TT----------EEEEECCEETTEECCCEEEEETTTTEEEEC--------C---------
T ss_pred eECCCCCcCccc-cEEEEE-CC----------EEEEEcCCCCCcccccEEEECCCCCeEeEC--------C---------
Confidence 22 22211111 122222 22 355666543 3455566543322110 0
Q ss_pred eccccccCCCEEEEEEcCCCCEEEEEECC-----CcEEEEEcCCCeEEEE--EecCCcCEEEEEEcCCCCEEEEEECC--
Q psy4869 1033 HTRTLKLEEQVLCARVSPDSKLLAVSLLD-----TTVKIFFLDTFKFFIS--LYGHKLPVLSLDMSYDSTLIATGSGD-- 1103 (2435)
Q Consensus 1033 ~~~~~~~~~~v~~l~~spdg~~Lavg~~d-----g~V~i~d~~~~~~~~~--l~~h~~~V~sl~~spdg~~L~Sgs~D-- 1103 (2435)
.. ........++.+ ++.+++.|+.+ ..+.+||..+.+-... +........++.+ ++++++.|+.+
T Consensus 154 -~~-p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 227 (308)
T 1zgk_A 154 -PM-LTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQ 227 (308)
T ss_dssp -CC-SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred -CC-CccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCC
Confidence 00 001111222223 67777777654 4588899876543321 1111111222233 56777777664
Q ss_pred ---CcEEEEEccCCceeEE--EeccCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCc
Q psy4869 1104 ---RTVKVWGLDYGDCHKS--LLAHEDSVTGVTFVPKTHYFFTTSKD-----GRVKQWDADNF 1156 (2435)
Q Consensus 1104 ---g~I~vWd~~t~~~~~~--l~~h~~~V~~v~fsp~~~~l~s~s~D-----g~V~iwD~~~~ 1156 (2435)
..+.+||+.+.+-... +.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 228 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 228 DQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 4688999887653321 1111122222322 56777777754 45778887764
No 383
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=90.93 E-value=4 Score=46.29 Aligned_cols=148 Identities=10% Similarity=0.029 Sum_probs=85.2
Q ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE------EEEEe--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcC
Q psy4869 490 YQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSV------VQKLR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 490 ~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~------v~~l~--~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~ 561 (2435)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+. +-+ .-.++.|.|+|.+.++ .||.|.-++--
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999986666 788888888755221 11221 111 1467899999999888 66988877642
Q ss_pred CCCCCCc--eEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCCc------EEEEec-CCCCCeeEEEEc
Q psy4869 562 PYVPGER--CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTRR------IAYKLP-GHNGSVNDVQFH 632 (2435)
Q Consensus 562 ~~~~~~~--~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~~------~~~~l~-~h~~~V~~l~fs 632 (2435)
......- .-..+..... ..+..+.+.|+|.+.++. |+.++-....+.. ....+. +.-..-.-+.|.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~ 190 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS 190 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence 1110000 0001100000 246789999999887777 7775433322111 111111 222334457799
Q ss_pred CCCCEEEEEECCCcEEE
Q psy4869 633 PKEPIIMSASSDKTIYL 649 (2435)
Q Consensus 633 pd~~~Lasgs~Dg~I~v 649 (2435)
+++.+.++. +|.++-
T Consensus 191 ~~G~l~~v~--~g~~Y~ 205 (236)
T 1tl2_A 191 SVGTLFGVQ--GGKFYE 205 (236)
T ss_dssp TTSCEEEEE--TTEEEE
T ss_pred CCCcEEEEe--CCeEEe
Confidence 999877666 776653
No 384
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.79 E-value=5.1 Score=57.01 Aligned_cols=239 Identities=11% Similarity=0.124 Sum_probs=134.9
Q ss_pred CCeEEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeE
Q psy4869 383 DRQIFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLL 462 (2435)
Q Consensus 383 Dg~I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~l 462 (2435)
...|.|.|+.++......-..-. +.-.+|..+.|+.- ...++.|||+++.+.++...-.. .|.-..|......-
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVA 120 (1630)
T ss_pred CceEEEEECCCCCCcccccccch----hhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeE
Confidence 34788888876443322111111 22235555444443 47799999999887666655433 34444555544333
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEeec-----CcccEEEEEECCCCCEEEEEe-------cCCeEEEEECCCCcEEEEEec
Q psy4869 463 IASGSDDCTVKVWDPRKK-NQAVSMN-----NTYQVTSVAFNDTAECVLTGG-------IDNDIKMWDLRTNSVVQKLRG 529 (2435)
Q Consensus 463 lasgs~Dg~I~vwD~~~~-~~~~~~~-----~~~~v~sv~~sp~g~~l~sgs-------~dg~V~lwD~~s~~~v~~l~~ 529 (2435)
++| +..|..|++... .+...+. ....|..-+.+++.++++..| -.|.+.+|..+.+. -+.++|
T Consensus 121 lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg 196 (1630)
T 1xi4_A 121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG 196 (1630)
T ss_pred EEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence 333 467999999642 2222221 245677788889999877543 34788999887553 234566
Q ss_pred CCCCEEEEEEc--CC-CCEEEEEEC---CCcEEEEEcCCC-CCC----CceEEEEeCcccccccCeEEEEEcCCCCEEEE
Q psy4869 530 HSDTVTGLSLS--PD-GSYILSNAM---DNTVRIWDIRPY-VPG----ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTA 598 (2435)
Q Consensus 530 h~~~V~~i~~s--pd-g~~las~s~---Dg~I~lWdl~~~-~~~----~~~v~~~~~h~~~~~~~i~~v~~spdg~~Las 598 (2435)
|.+.-..+... +. ...++-+.. .+.++|-++... ... .+.+..+.... ...+-...+..++....+..
T Consensus 197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~-~~~Dfpv~~~vs~k~g~iy~ 275 (1630)
T 1xi4_A 197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE-AQNDFPVAMQISEKHDVVFL 275 (1630)
T ss_pred hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc-cccCcceEEEeccccCEEEE
Confidence 65544333332 11 122222222 368888888642 000 11122222211 11223456777777778888
Q ss_pred ecCCCeEEEEECCCCcEEEEecCCCCCeeEEEEc
Q psy4869 599 GSADKCVYIWDTTTRRIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 599 gs~Dg~V~iwd~~s~~~~~~l~~h~~~V~~l~fs 632 (2435)
...-|.|.+||+.++.++..-+-....|...+-+
T Consensus 276 itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 276 ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred EecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 8999999999999999877554444444444433
No 385
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.77 E-value=6.9 Score=47.51 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=84.0
Q ss_pred EEEEecCCceeeEEEeeCCCCCeeEEEEccCCCEEEEEeC----CC-------eEEEEECCCCceEEEEeccCccccccC
Q psy4869 386 IFIWSVYGECENIGVMSGHTGAVMDLKFSTDGCHIFTCST----DQ-------TLAVWDLEKGQRIKKMKGHSTFVNSCD 454 (2435)
Q Consensus 386 I~iwd~~~~~~~~~~l~~h~~~V~~l~~s~dg~~L~s~s~----Dg-------~I~vwd~~tg~~v~~l~~h~~~v~sv~ 454 (2435)
+.+||.....=....+..............++..++.|+. ++ .+.+||..+++....-...........
T Consensus 26 ~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 105 (318)
T 2woz_A 26 AVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGL 105 (318)
T ss_dssp EEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEE
T ss_pred eEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccce
Confidence 6777766433222222211122222333456777777773 11 277889887765432111111111111
Q ss_pred cccCCCeEEEEEeCC-------CeEEEEeCCCCcceEeecCc---ccEEEEEECCCCCEEEEEec------CCeEEEEEC
Q psy4869 455 PVRRGQLLIASGSDD-------CTVKVWDPRKKNQAVSMNNT---YQVTSVAFNDTAECVLTGGI------DNDIKMWDL 518 (2435)
Q Consensus 455 ~~~~~~~llasgs~D-------g~I~vwD~~~~~~~~~~~~~---~~v~sv~~sp~g~~l~sgs~------dg~V~lwD~ 518 (2435)
.. .+..+++.|+.+ ..+.+||+.+.+........ .....+. .++++++.|+. -..+.+||.
T Consensus 106 ~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~ 182 (318)
T 2woz_A 106 GE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNP 182 (318)
T ss_dssp EE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEET
T ss_pred EE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcC
Confidence 11 134666667654 35788888776543322111 1112222 36667777764 245999999
Q ss_pred CCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEECCC-----cEEEEEcCC
Q psy4869 519 RTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAMDN-----TVRIWDIRP 562 (2435)
Q Consensus 519 ~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~Dg-----~I~lWdl~~ 562 (2435)
.+.+-... +........++.+ +++.++.|+.++ .+.+||+..
T Consensus 183 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 183 KKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 88754332 2111111122222 567777776543 466788764
No 386
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=90.25 E-value=12 Score=45.16 Aligned_cols=202 Identities=12% Similarity=0.042 Sum_probs=95.3
Q ss_pred eEEEEECCCCceEEEE-eccCccccccCcccCCCeEEEEEeC----CC-------eEEEEeCCCCcceEee--cC-cccE
Q psy4869 428 TLAVWDLEKGQRIKKM-KGHSTFVNSCDPVRRGQLLIASGSD----DC-------TVKVWDPRKKNQAVSM--NN-TYQV 492 (2435)
Q Consensus 428 ~I~vwd~~tg~~v~~l-~~h~~~v~sv~~~~~~~~llasgs~----Dg-------~I~vwD~~~~~~~~~~--~~-~~~v 492 (2435)
.+..||..+++....- ........... ...+..+++.|+. ++ .+..||+.+.+....- .. ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 103 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSI-VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEE-ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred ceEEECCCCCceecccCCccCCccceEE-EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence 4789999888765421 11111111111 1223456666763 11 2777888765543221 11 1122
Q ss_pred EEEEECCCCCEEEEEecC-------CeEEEEECCCCcEEEE--EecCCCCEEEEEEcCCCCEEEEEEC------CCcEEE
Q psy4869 493 TSVAFNDTAECVLTGGID-------NDIKMWDLRTNSVVQK--LRGHSDTVTGLSLSPDGSYILSNAM------DNTVRI 557 (2435)
Q Consensus 493 ~sv~~sp~g~~l~sgs~d-------g~V~lwD~~s~~~v~~--l~~h~~~V~~i~~spdg~~las~s~------Dg~I~l 557 (2435)
..+.+ ++++++.|+.+ ..+.+||..+.+-... +......-..+. .+++.++.|+. -..+.+
T Consensus 104 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 104 GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEE
T ss_pred ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEE
Confidence 22233 56777777764 3588999987654332 111100111122 36666677664 235888
Q ss_pred EEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC-----CeEEEEECCCCcEEE--EecCCCCCeeEEE
Q psy4869 558 WDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD-----KCVYIWDTTTRRIAY--KLPGHNGSVNDVQ 630 (2435)
Q Consensus 558 Wdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D-----g~V~iwd~~s~~~~~--~l~~h~~~V~~l~ 630 (2435)
||+... + -......... ......+. -++++++.|+.+ ..+.+||..+.+-.. .++.....-..+.
T Consensus 180 yd~~~~----~-W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 251 (318)
T 2woz_A 180 YNPKKG----D-WKDLAPMKTP-RSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS 251 (318)
T ss_dssp EETTTT----E-EEEECCCSSC-CBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE
T ss_pred EcCCCC----E-EEECCCCCCC-cccceEEE--ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE
Confidence 888742 1 1111111100 01111222 267777777653 357789988765332 2221111112222
Q ss_pred EcCCCCEEEEEECC
Q psy4869 631 FHPKEPIIMSASSD 644 (2435)
Q Consensus 631 fspd~~~Lasgs~D 644 (2435)
-++++++.||.+
T Consensus 252 --~~~~i~v~GG~~ 263 (318)
T 2woz_A 252 --LAGSLYAIGGFA 263 (318)
T ss_dssp --ETTEEEEECCBC
T ss_pred --ECCEEEEECCee
Confidence 245667777654
No 387
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.14 E-value=6.9 Score=55.76 Aligned_cols=235 Identities=8% Similarity=0.039 Sum_probs=130.5
Q ss_pred CCcEEEEEccCCceeEEEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeC
Q psy4869 1103 DRTVKVWGLDYGDCHKSLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSY 1182 (2435)
Q Consensus 1103 Dg~I~vWd~~t~~~~~~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 1182 (2435)
...|.|.|+..+..+.+-. -.--+.-.+|..+.++.-. ...+.+||+.+...+.... ...+|.--.|-.
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~-------~~e~VvfWkWis 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT-------MTDDVTFWKWIS 115 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc-------cCCCceEEEecC
Confidence 3478888887765432211 1122344567666665554 6899999998876665542 234566556654
Q ss_pred CCCEEEEEeCCCcEEEEEccC-CceeeEeecc----CCCEEEEEEeeCCCEEEEEE-------CCCcEEEEECCCCceEE
Q psy4869 1183 DSTLIATGSGDRTVKVWGLDY-GDCHKSLLAH----EDSVTGVTFVPKTHYFFTTS-------KDGRVKQWDADNFERIV 1250 (2435)
Q Consensus 1183 dg~~l~sgs~Dg~V~iwd~~t-~~~~~~~~~h----~~~V~~i~~spd~~~lvsgs-------~Dg~I~vwD~~~~~~v~ 1250 (2435)
+. .|+.. .+..|..|++.. ..+.+.+..| ...|..-..+++.++++..| -.|.+.+|....... .
T Consensus 116 ~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q 192 (1630)
T 1xi4_A 116 LN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-Q 192 (1630)
T ss_pred CC-eeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-h
Confidence 33 34333 245799999974 2344455555 34677777788888887665 346677777654321 1
Q ss_pred EEeeCCcccc-------cCceEEEEE----ECCCeEEEEEcccc-cccccccccccccccccceeeeeecccccccccEE
Q psy4869 1251 TLHFNPNVYL-------PLQIQVVTG----GGDKSVKLWQLELV-SVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVL 1318 (2435)
Q Consensus 1251 ~~~~~~~~~~-------~~~~~lv~g----~~d~~v~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1318 (2435)
.+..+...|. +....+++- ...+++++-++... ........ +....... .......-.
T Consensus 193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~k---------k~~~~~~~-~~~~~Dfpv 262 (1630)
T 1xi4_A 193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK---------KAVDVFFP-PEAQNDFPV 262 (1630)
T ss_pred hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCcc---------ccccccCC-cccccCcce
Confidence 1122222221 111223321 12378888888643 11000000 00000000 011234455
Q ss_pred EEEecCCcceeEEeecCCeEEEEEcccceEEEEecCCCCCeEE
Q psy4869 1319 CARVSPDSKLLAVSLLDTTVKIFFLDTFKFFISLYGHKLPVLS 1361 (2435)
Q Consensus 1319 ~ia~spdg~~lavgs~dG~V~v~d~~~~k~i~~~~~h~~~V~~ 1361 (2435)
.+..++.-..+.+-+.-|.+++||+.++.++..-+-...+|..
T Consensus 263 ~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred EEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence 7778888778888999999999999998876655533333433
No 388
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.78 E-value=6.1 Score=48.87 Aligned_cols=219 Identities=10% Similarity=0.000 Sum_probs=101.7
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--CceEEEEec-c-CccccccCcccCCCeEEEEEeC-C---------CeEEEEeCCCC
Q psy4869 416 DGCHIFTCST-DQTLAVWDLEK--GQRIKKMKG-H-STFVNSCDPVRRGQLLIASGSD-D---------CTVKVWDPRKK 480 (2435)
Q Consensus 416 dg~~L~s~s~-Dg~I~vwd~~t--g~~v~~l~~-h-~~~v~sv~~~~~~~~llasgs~-D---------g~I~vwD~~~~ 480 (2435)
++..++.|+. ...+.+||+.+ .+.. .+.. . .......... .+..+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~-~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWT-ALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEE-ECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCee-ECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 3444444443 34688888864 3332 2221 1 1111111111 13456666665 2 45888998876
Q ss_pred cceEee--c-C-cccEEEEEECCCCCEEEEEecC---------------------------------------CeEEEEE
Q psy4869 481 NQAVSM--N-N-TYQVTSVAFNDTAECVLTGGID---------------------------------------NDIKMWD 517 (2435)
Q Consensus 481 ~~~~~~--~-~-~~~v~sv~~sp~g~~l~sgs~d---------------------------------------g~V~lwD 517 (2435)
+..... . . .....++. .++++++.|+.+ ..+.+||
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred cEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 533322 1 1 11222222 467778888754 5799999
Q ss_pred CCCCcEE--EEEecCCCCEEEEEEcCCCCEEEEEEC------CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEE
Q psy4869 518 LRTNSVV--QKLRGHSDTVTGLSLSPDGSYILSNAM------DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAW 589 (2435)
Q Consensus 518 ~~s~~~v--~~l~~h~~~V~~i~~spdg~~las~s~------Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~ 589 (2435)
..+.+-. ..+......-.++... +++.++.|+. ...+.+||+... ...-......... .......+.
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~---~~~W~~~~~~~~~-~~~~~~~~~ 249 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGN---NLKWNKLAPVSSP-DGVAGGFAG 249 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC------CEEEECCCSSTT-TCCBSCEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCC---CCcEEecCCCCCC-cccccceEE
Confidence 9876543 3322111110122222 5666666654 235666776311 1111111111000 001111122
Q ss_pred cCCCCEEEEecCC----------------------CeEEEEECCCC--cEEEEecCCCCCeeEEEEcCCCCEEEEEECCC
Q psy4869 590 SVSGLYVTAGSAD----------------------KCVYIWDTTTR--RIAYKLPGHNGSVNDVQFHPKEPIIMSASSDK 645 (2435)
Q Consensus 590 spdg~~Lasgs~D----------------------g~V~iwd~~s~--~~~~~l~~h~~~V~~l~fspd~~~Lasgs~Dg 645 (2435)
..++++++.|+.+ ..+.+||+.+. +.+..+......-.++ .-++++++.||.++
T Consensus 250 ~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 250 ISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETA 327 (357)
T ss_dssp EETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECG
T ss_pred EECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCC
Confidence 3367777777732 25788998865 3444444332222222 24677888888654
No 389
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=88.52 E-value=5.2 Score=49.52 Aligned_cols=62 Identities=5% Similarity=-0.024 Sum_probs=34.4
Q ss_pred CCcEEEEec--CCcEEEEeCCC--Cce--eEEEe-CCCeEEEEEEecCCCEEEEEeC----------CCeEEEEEccCCc
Q psy4869 896 DNLALVSAC--ASQVKIWNRPS--LSC--LRTID-TGSYALSVCFVPGDRHVLVGTK----------DGRLLIVDIGAGE 958 (2435)
Q Consensus 896 dg~~la~g~--~~~V~Iwd~~~--~~~--~~~l~-~~~~v~~vafspdg~~Lavg~~----------dg~V~vwd~~sg~ 958 (2435)
+++.++.|+ .+.+.++|... .+. +..++ .+..-.+++. -++++++.|+. -..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 555555554 36899999864 222 22222 1222222222 35666666654 2468899998876
No 390
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=87.43 E-value=20 Score=43.11 Aligned_cols=158 Identities=6% Similarity=0.043 Sum_probs=88.2
Q ss_pred CeEEEEeCCCCcceEeecCcccEEEEEECCCCCEEEEEe----cCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCE
Q psy4869 470 CTVKVWDPRKKNQAVSMNNTYQVTSVAFNDTAECVLTGG----IDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSY 545 (2435)
Q Consensus 470 g~I~vwD~~~~~~~~~~~~~~~v~sv~~sp~g~~l~sgs----~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~ 545 (2435)
..|+..++...+........ +..|++++++|+-.. ....|+..++.... ...+..+.. ..|+++|+.
T Consensus 88 ~~Iy~i~~dg~~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~ 158 (302)
T 3s25_A 88 NSLCRIKRNGHGSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRY 158 (302)
T ss_dssp EEEEEEETTSCCCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTE
T ss_pred CeEEEEeCCCCcceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCE
Confidence 46777777766533322222 236778999988776 34567777776443 344443432 456788888
Q ss_pred EEEEEC-CCcEEEEEcCCCCCCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCC--CeEEEEECCCCcEEEEecCC
Q psy4869 546 ILSNAM-DNTVRIWDIRPYVPGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD--KCVYIWDTTTRRIAYKLPGH 622 (2435)
Q Consensus 546 las~s~-Dg~I~lWdl~~~~~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D--g~V~iwd~~s~~~~~~l~~h 622 (2435)
|+-.+. ..+|.+-++.. ......+.+. .. ..+.|++++|+-...+ ..|..-++.... ...+..
T Consensus 159 iy~t~~g~~~Iy~~~l~g----~~~~~l~~~~-------~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~- 224 (302)
T 3s25_A 159 FYYNNPKNGQLYRYDTAS----QSEALFYDCN-------CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE- 224 (302)
T ss_dssp EEEECTTTCCEEEEETTT----TEEEEEECSC-------EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC-
T ss_pred EEEEeCCCceEEEEECCC----CCEEEEeCCC-------cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC-
Confidence 885554 67777777752 2222222221 12 2355888888766543 356666665443 233322
Q ss_pred CCCeeEEEEcCCCCEEEEEEC--CCcEEEecCC
Q psy4869 623 NGSVNDVQFHPKEPIIMSASS--DKTIYLGESP 653 (2435)
Q Consensus 623 ~~~V~~l~fspd~~~Lasgs~--Dg~I~vWd~~ 653 (2435)
..+ ..|+|++++|+-+.. .+.|..-+++
T Consensus 225 -~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 225 -ANI--EHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -SCE--EEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -CCc--ceEEECCCEEEEEECCCCcEEEEEECC
Confidence 223 347888888876543 2445554444
No 391
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=84.79 E-value=87 Score=38.90 Aligned_cols=175 Identities=7% Similarity=-0.019 Sum_probs=83.6
Q ss_pred CEEEEEeCCCeEEEEecCC---ceeeEEEeeCCCCCeeEEEEcc-CCCEEEEEeCCC----eEEEEECCCCceEEEEecc
Q psy4869 375 QYIASSGYDRQIFIWSVYG---ECENIGVMSGHTGAVMDLKFST-DGCHIFTCSTDQ----TLAVWDLEKGQRIKKMKGH 446 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~---~~~~~~~l~~h~~~V~~l~~s~-dg~~L~s~s~Dg----~I~vwd~~tg~~v~~l~~h 446 (2435)
..|..|+..| +.+++... ....... ......|.+|++.| +...|+++...+ .|...+ +.|+....+...
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~-~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGP-VFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEE-ESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCc-cCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcc
Confidence 4667777777 44444322 2222211 12346799999998 344555555554 343332 234333332210
Q ss_pred --------------CccccccCcccCC-CeEEEEEeCCCeEEEEeCCCCc--ceEee-----------------cCcccE
Q psy4869 447 --------------STFVNSCDPVRRG-QLLIASGSDDCTVKVWDPRKKN--QAVSM-----------------NNTYQV 492 (2435)
Q Consensus 447 --------------~~~v~sv~~~~~~-~~llasgs~Dg~I~vwD~~~~~--~~~~~-----------------~~~~~v 492 (2435)
...|.++.+.+.+ +..+..+...+.|...+-.... .+... .....+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1134456666532 2334444444544444322111 11100 012357
Q ss_pred EEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEEec-----C--------CCCEEEEEEcCC-CCEEEEEECCC
Q psy4869 493 TSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVVQKLRG-----H--------SDTVTGLSLSPD-GSYILSNAMDN 553 (2435)
Q Consensus 493 ~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v~~l~~-----h--------~~~V~~i~~spd-g~~las~s~Dg 553 (2435)
.+|.++|. ...|+++..++.|+..+- .++....+.. + ...+.+|.+.|+ ...|+.+...+
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 89999984 455666665565555432 1222222210 0 124899999986 46677766554
No 392
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=84.65 E-value=12 Score=51.01 Aligned_cols=201 Identities=10% Similarity=0.123 Sum_probs=103.8
Q ss_pred cCCCEEEEEeCC----CeEEEEECCCCceEEEE-e-----ccCccc-cccCcccCCCeEEEEEeCCC------eEEEEeC
Q psy4869 415 TDGCHIFTCSTD----QTLAVWDLEKGQRIKKM-K-----GHSTFV-NSCDPVRRGQLLIASGSDDC------TVKVWDP 477 (2435)
Q Consensus 415 ~dg~~L~s~s~D----g~I~vwd~~tg~~v~~l-~-----~h~~~v-~sv~~~~~~~~llasgs~Dg------~I~vwD~ 477 (2435)
.++..++.|+.+ ..+.+||..+++....- . ...... .++.....+..+++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 355666666643 35889998887765443 2 111111 11222221446777777543 4788888
Q ss_pred CCCcceEee--cCcccEEEEEECCCCCEEEEEecCC--eEEEEECCCCcEEEEE-----ecCCCCEEEEEEcCC-CCEEE
Q psy4869 478 RKKNQAVSM--NNTYQVTSVAFNDTAECVLTGGIDN--DIKMWDLRTNSVVQKL-----RGHSDTVTGLSLSPD-GSYIL 547 (2435)
Q Consensus 478 ~~~~~~~~~--~~~~~v~sv~~sp~g~~l~sgs~dg--~V~lwD~~s~~~v~~l-----~~h~~~V~~i~~spd-g~~la 547 (2435)
.+......- .....-.+++.-.++++++.|+.++ .+.+||..+.+-...- ........++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775433221 1111122333334788888887655 7999999887543221 111122233555555 66777
Q ss_pred EEEC--C-----CcEEEEEcCCCCCCCc-eEEEEeCcccccccCeEEEEEcCCCCEEEEecC--------CCeEEEEECC
Q psy4869 548 SNAM--D-----NTVRIWDIRPYVPGER-CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSA--------DKCVYIWDTT 611 (2435)
Q Consensus 548 s~s~--D-----g~I~lWdl~~~~~~~~-~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~--------Dg~V~iwd~~ 611 (2435)
.|+. + ..+.+||+........ .-......... ...-..+....++++++.|+. ...+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~-~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF-QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG-CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC-CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 3588899875321000 01111111000 011112233333777888874 3469999998
Q ss_pred CCcEE
Q psy4869 612 TRRIA 616 (2435)
Q Consensus 612 s~~~~ 616 (2435)
+.+-.
T Consensus 635 t~~W~ 639 (695)
T 2zwa_A 635 SETLT 639 (695)
T ss_dssp TTEEE
T ss_pred CCeEE
Confidence 87654
No 393
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=83.92 E-value=1.1e+02 Score=39.21 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=34.5
Q ss_pred eEEEEEEecCCC-EEEEEeCCCeEEEEEccCCc---eeeccc---c------cccceeEEEEecC
Q psy4869 927 YALSVCFVPGDR-HVLVGTKDGRLLIVDIGAGE---ILEDIP---A------HSQELWSVAMLPD 978 (2435)
Q Consensus 927 ~v~~vafspdg~-~Lavg~~dg~V~vwd~~sg~---~v~~~~---~------h~~~V~sv~~s~d 978 (2435)
....|+|.|||+ .|+++...|.|++++..... .+..++ + .......|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456899999996 67777889999999753221 222221 1 1346788999986
No 394
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=83.48 E-value=42 Score=38.16 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=81.7
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCce------EEEEe-ccCccccccCcccCCCeEEEEEeCCCeEEEEeCC
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQR------IKKMK-GHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR 478 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~------v~~l~-~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~ 478 (2435)
..+.+++|+|+|.+.++ .+|.++-.+..++.. -..+- ..-..-..+.|.+++..+++ .||.|.-++..
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav---~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV---SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE---ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe---CCCEEEEeCCC
Confidence 47789999998875444 677766666544211 11111 01111345666777754443 55888877764
Q ss_pred CCcceEe------ec--CcccEEEEEECCCCCEEEEEecCCeEEEEECCCCc------EEEEEe-cCCCCEEEEEEcCCC
Q psy4869 479 KKNQAVS------MN--NTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNS------VVQKLR-GHSDTVTGLSLSPDG 543 (2435)
Q Consensus 479 ~~~~~~~------~~--~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~------~v~~l~-~h~~~V~~i~~spdg 543 (2435)
+.....- +. .=..+..|.|.|+|.+.++. ||.++-.....+. ....+. .......-+.|.++|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3221111 10 11357999999999977776 7776543333211 111221 333345557799999
Q ss_pred CEEEEEECCCcEEEEEcC
Q psy4869 544 SYILSNAMDNTVRIWDIR 561 (2435)
Q Consensus 544 ~~las~s~Dg~I~lWdl~ 561 (2435)
...+.. ++ ++|-..
T Consensus 194 ~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 194 TLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp CEEEEE--TT--EEEEES
T ss_pred cEEEEe--CC--eEEecC
Confidence 888876 66 455443
No 395
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=80.67 E-value=1.4e+02 Score=38.20 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=113.2
Q ss_pred EEEEEECCCCC-EEEEEeCCCeEEEEecCCce--eeEEEee---------CCCCCeeEEEEccC---CCEEEEE-eC--C
Q psy4869 365 IFCSKYHPDGQ-YIASSGYDRQIFIWSVYGEC--ENIGVMS---------GHTGAVMDLKFSTD---GCHIFTC-ST--D 426 (2435)
Q Consensus 365 V~~l~fspdg~-~Lasgs~Dg~I~iwd~~~~~--~~~~~l~---------~h~~~V~~l~~s~d---g~~L~s~-s~--D 426 (2435)
-..|+|.|+|. .|+.+...|.|++++..+.. ..+..+. ...+....|+|+|+ ..+|+.. +. +
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 35789999996 45556789999999754321 1112111 11457889999996 2344433 22 1
Q ss_pred ----------CeEEEEECCC----------CceEEEEe--ccCccccccCcccCCCeEEEEEeCC---------------
Q psy4869 427 ----------QTLAVWDLEK----------GQRIKKMK--GHSTFVNSCDPVRRGQLLIASGSDD--------------- 469 (2435)
Q Consensus 427 ----------g~I~vwd~~t----------g~~v~~l~--~h~~~v~sv~~~~~~~~llasgs~D--------------- 469 (2435)
..|.-|.+.. .+.+..+. ........+.|.|++..++.+|...
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~ 175 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDF 175 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCC
Confidence 1344455532 12333332 2223456788999986666665432
Q ss_pred -CeEEEEeCCCC---------------------cceEeecCcccEEEEEECCC-----CC-EEEEEecCC----eEEEEE
Q psy4869 470 -CTVKVWDPRKK---------------------NQAVSMNNTYQVTSVAFNDT-----AE-CVLTGGIDN----DIKMWD 517 (2435)
Q Consensus 470 -g~I~vwD~~~~---------------------~~~~~~~~~~~v~sv~~sp~-----g~-~l~sgs~dg----~V~lwD 517 (2435)
|.|.=.|.... ..+....+. ....++|+|. |+ +++.+...| .-.|..
T Consensus 176 ~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~R-Np~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~ 254 (463)
T 2wg3_C 176 TGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLH-DPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ 254 (463)
T ss_dssp TTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCS-SCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred CeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCC-CcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence 22333344331 112222333 2457889986 34 344443212 123333
Q ss_pred CCCC------cEEEEEecCC-CCEEEEEEcCC-------CCEEEEEECCCcEEEEEcCCCCCCCceEEEE-eCc----cc
Q psy4869 518 LRTN------SVVQKLRGHS-DTVTGLSLSPD-------GSYILSNAMDNTVRIWDIRPYVPGERCVKVM-SGH----QH 578 (2435)
Q Consensus 518 ~~s~------~~v~~l~~h~-~~V~~i~~spd-------g~~las~s~Dg~I~lWdl~~~~~~~~~v~~~-~~h----~~ 578 (2435)
+..+ .++..+..|. ..+..+.|-.. |.+| .+...+.|....+........ ...+ .+. ..
T Consensus 255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~-~~~~~~g~~~~~~~ 332 (463)
T 2wg3_C 255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQ-EKPLCLGTSGSCRG 332 (463)
T ss_dssp EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCE-EEEECEEETTSSCS
T ss_pred eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceee-EEEeecCCcccccc
Confidence 3322 2344444332 46778887542 3344 445556655555542211111 1111 110 01
Q ss_pred ccccCeEEEEEcCCCCEEEEec
Q psy4869 579 NFEKNLLRCAWSVSGLYVTAGS 600 (2435)
Q Consensus 579 ~~~~~i~~v~~spdg~~Lasgs 600 (2435)
.....+..+...|||.++++-.
T Consensus 333 ~~~~r~~~v~~~pdG~Lyv~~~ 354 (463)
T 2wg3_C 333 YFSGHILGFGEDELGEVYILSS 354 (463)
T ss_dssp CCCSEEEEEEECTTCCEEEEEE
T ss_pred cccCcceEEEECCCCCEEEEec
Confidence 1124678888999988766654
No 396
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.32 E-value=84 Score=38.10 Aligned_cols=234 Identities=11% Similarity=0.041 Sum_probs=125.6
Q ss_pred CEEEEEeCCCeEEEEecCCcee------eEEEe-eCCCCCeeEEEEccCCCEEEEEeCCCeEEEEE---CCC------Cc
Q psy4869 375 QYIASSGYDRQIFIWSVYGECE------NIGVM-SGHTGAVMDLKFSTDGCHIFTCSTDQTLAVWD---LEK------GQ 438 (2435)
Q Consensus 375 ~~Lasgs~Dg~I~iwd~~~~~~------~~~~l-~~h~~~V~~l~~s~dg~~L~s~s~Dg~I~vwd---~~t------g~ 438 (2435)
..+++-+.+|.|+--.+..-.. -...+ ......+..+......+.|+.-+..|.++... +.. |.
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 3566677788777655321000 00001 11234455555445556677777777655444 322 22
Q ss_pred eEEE---EeccCccccccCcccC--CCeEEEEEeCCCeEEEEeCCCC-------cceEeecCcccEEEEEECCCCCEEEE
Q psy4869 439 RIKK---MKGHSTFVNSCDPVRR--GQLLIASGSDDCTVKVWDPRKK-------NQAVSMNNTYQVTSVAFNDTAECVLT 506 (2435)
Q Consensus 439 ~v~~---l~~h~~~v~sv~~~~~--~~~llasgs~Dg~I~vwD~~~~-------~~~~~~~~~~~v~sv~~sp~g~~l~s 506 (2435)
++.. +. ....|..+....+ ....++..+.+|.++-..+... .....+.....+..+........|+.
T Consensus 84 ~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 1111 11 1222333222221 2356778899999998875431 12223334555666666566678888
Q ss_pred EecCCeEEEEECC--CCcE-------EEEEe-cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCC---ceEEEE
Q psy4869 507 GGIDNDIKMWDLR--TNSV-------VQKLR-GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGE---RCVKVM 573 (2435)
Q Consensus 507 gs~dg~V~lwD~~--s~~~-------v~~l~-~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~---~~v~~~ 573 (2435)
.+..|.+..+... .-.. +.-+. ...+.|.++...+++..|+..+..|.++.-.+..+.... +-+..+
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9999999888776 2111 11111 234567777776677789999999999998876543222 222222
Q ss_pred eCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 574 SGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 574 ~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
.-.. -.+.+..+....+...|+..+.+|.+.-++..
T Consensus 243 ~l~~--~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 243 MYDR--RRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CCCT--TTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EecC--CCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 2111 01234554444445566667777777777654
No 397
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=78.27 E-value=1.4e+02 Score=36.96 Aligned_cols=261 Identities=11% Similarity=0.012 Sum_probs=118.0
Q ss_pred CcEEEEEECC--CCCEEEEEeCCC----eEEEEecCC-ceeeEEE---eeC--------CCCCeeEEEEcc-C-CCEEEE
Q psy4869 363 GEIFCSKYHP--DGQYIASSGYDR----QIFIWSVYG-ECENIGV---MSG--------HTGAVMDLKFST-D-GCHIFT 422 (2435)
Q Consensus 363 ~~V~~l~fsp--dg~~Lasgs~Dg----~I~iwd~~~-~~~~~~~---l~~--------h~~~V~~l~~s~-d-g~~L~s 422 (2435)
..|.+|.+.| .+.+++ ++..| .|...+-.+ ....+.. +.. +...|..|++.+ + ...|++
T Consensus 55 ~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLM-AARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp SEEEEEEECSSSTTCEEE-EEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CceEEEEECCCCCCeEEE-EecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 4689999998 444444 44444 444432111 1111110 111 113578899986 2 556777
Q ss_pred EeCCCeEEEEECCCCceEEEEec-------------------cCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcce
Q psy4869 423 CSTDQTLAVWDLEKGQRIKKMKG-------------------HSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQA 483 (2435)
Q Consensus 423 ~s~Dg~I~vwd~~tg~~v~~l~~-------------------h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~ 483 (2435)
+...+.|...+- .|+....+.. ....+.++.+.|.++..+..+..++.|...+-. ++.-
T Consensus 134 g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~tW 211 (394)
T 3b7f_A 134 GTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GTDW 211 (394)
T ss_dssp EEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TSSC
T ss_pred EecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CCCc
Confidence 666665554432 3333333321 112345666666433323333333434333211 1111
Q ss_pred EeecC--------------cccEEEEEECCC-CCEEEEEecCCeEEEEECCCCcEEEEEec--CC---CCEEEEEEcC-C
Q psy4869 484 VSMNN--------------TYQVTSVAFNDT-AECVLTGGIDNDIKMWDLRTNSVVQKLRG--HS---DTVTGLSLSP-D 542 (2435)
Q Consensus 484 ~~~~~--------------~~~v~sv~~sp~-g~~l~sgs~dg~V~lwD~~s~~~v~~l~~--h~---~~V~~i~~sp-d 542 (2435)
..... ...+.++.++|. ...|+++... .|+..+- .++....+.. .. ..+.+|.++| +
T Consensus 212 ~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~-gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~ 289 (394)
T 3b7f_A 212 KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHC-GIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRD 289 (394)
T ss_dssp EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETT-EEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSC
T ss_pred eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCC-eEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCC
Confidence 11100 134889999986 4567666644 4555442 2333333321 11 3467888887 3
Q ss_pred CCEEEEEEC-----------CCcEEEEEcCCCCCCCceEEEEe-Cccc--ccc-cCeEEEEEcCC-CCEEEEecCCCeEE
Q psy4869 543 GSYILSNAM-----------DNTVRIWDIRPYVPGERCVKVMS-GHQH--NFE-KNLLRCAWSVS-GLYVTAGSADKCVY 606 (2435)
Q Consensus 543 g~~las~s~-----------Dg~I~lWdl~~~~~~~~~v~~~~-~h~~--~~~-~~i~~v~~spd-g~~Lasgs~Dg~V~ 606 (2435)
...|+.+.. ++...||.-... ++.-..+. +... ... .....++++|. ...|+.++.++.|.
T Consensus 290 ~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~Dg---G~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 290 PRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDA---GESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp TTCEEEEECBCCSSTTCCBCCSSCCEEEESST---TSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred CCEEEEEeccCCccceeecCCCceeEEEECCC---CCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 444554432 333456654432 11112221 1110 000 00124677764 34566666566554
Q ss_pred EEECCCCcEEEEecCCCCCeeEEEEc
Q psy4869 607 IWDTTTRRIAYKLPGHNGSVNDVQFH 632 (2435)
Q Consensus 607 iwd~~s~~~~~~l~~h~~~V~~l~fs 632 (2435)
.-+ ..|+--..+..+-..|.+|+|.
T Consensus 367 ~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 367 ASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEC-CCCCCceEcccCCCCeeEEEEe
Confidence 332 2233333333444557777764
No 398
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=76.37 E-value=7.3 Score=49.95 Aligned_cols=83 Identities=14% Similarity=0.089 Sum_probs=61.8
Q ss_pred ceEEEEecCCCcEEEEec--CCcEEEEeCCCCce-------------eEEEeCCCeEEEEEEecCCCEEEEEeCCCeEEE
Q psy4869 887 EVRALAFSSDNLALVSAC--ASQVKIWNRPSLSC-------------LRTIDTGSYALSVCFVPGDRHVLVGTKDGRLLI 951 (2435)
Q Consensus 887 ~V~~la~s~dg~~la~g~--~~~V~Iwd~~~~~~-------------~~~l~~~~~v~~vafspdg~~Lavg~~dg~V~v 951 (2435)
.+..+-++|||+|++++. +..|.|+|..+... +.+.+.+...+..+|.++|....+-.-|..|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 556699999999999987 47999999884221 456678999999999999943334446999999
Q ss_pred EEccCC----------ceeecccccccc
Q psy4869 952 VDIGAG----------EILEDIPAHSQE 969 (2435)
Q Consensus 952 wd~~sg----------~~v~~~~~h~~~ 969 (2435)
|++... .++..+..|.++
T Consensus 404 Wni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 404 WNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred EeccHHHHHhcCccCCeeeeccccccCC
Confidence 999753 355555555543
No 399
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.06 E-value=36 Score=46.22 Aligned_cols=189 Identities=8% Similarity=0.076 Sum_probs=97.6
Q ss_pred CCCCEEEEEeCC----CeEEEEecCCc-eeeEE-Ee----eCCCCCeeEEEEcc-CCCEEEEEeCC------CeEEEEEC
Q psy4869 372 PDGQYIASSGYD----RQIFIWSVYGE-CENIG-VM----SGHTGAVMDLKFST-DGCHIFTCSTD------QTLAVWDL 434 (2435)
Q Consensus 372 pdg~~Lasgs~D----g~I~iwd~~~~-~~~~~-~l----~~h~~~V~~l~~s~-dg~~L~s~s~D------g~I~vwd~ 434 (2435)
-++.+++.||.+ ..+.+||.... ...+. .+ ......-..++... +++.++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777754 35778887643 22222 10 01111112333333 66677777654 35889999
Q ss_pred CCCceEEEEeccCcccc-ccCcccCCCeEEEEEeCCC--eEEEEeCCCCcceEeec------CcccEEEEEECCC-CCEE
Q psy4869 435 EKGQRIKKMKGHSTFVN-SCDPVRRGQLLIASGSDDC--TVKVWDPRKKNQAVSMN------NTYQVTSVAFNDT-AECV 504 (2435)
Q Consensus 435 ~tg~~v~~l~~h~~~v~-sv~~~~~~~~llasgs~Dg--~I~vwD~~~~~~~~~~~------~~~~v~sv~~sp~-g~~l 504 (2435)
.+.+....-........ ++.... +..+++.|+.++ .+.+||+.+........ ......++.+..+ ++++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy 554 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI 554 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence 88765433211111111 111112 345667777654 68999988765433221 1222334555655 6677
Q ss_pred EEEec--C-----CeEEEEECCCCcE-----EEEEec----CCCCEEEEEEcCCCCEEEEEECC--------CcEEEEEc
Q psy4869 505 LTGGI--D-----NDIKMWDLRTNSV-----VQKLRG----HSDTVTGLSLSPDGSYILSNAMD--------NTVRIWDI 560 (2435)
Q Consensus 505 ~sgs~--d-----g~V~lwD~~s~~~-----v~~l~~----h~~~V~~i~~spdg~~las~s~D--------g~I~lWdl 560 (2435)
+.|+. + ..+.+||+.+.+. ...+.. ...... +....+++.++.|+.+ ..+.+||+
T Consensus 555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 633 (695)
T 2zwa_A 555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-IKYITPRKLLIVGGTSPSGLFDRTNSIISLDP 633 (695)
T ss_dssp EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-EEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-EEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence 77765 2 4689999988761 122211 111112 2223336777777743 45788887
Q ss_pred CC
Q psy4869 561 RP 562 (2435)
Q Consensus 561 ~~ 562 (2435)
..
T Consensus 634 ~t 635 (695)
T 2zwa_A 634 LS 635 (695)
T ss_dssp TT
T ss_pred CC
Confidence 63
No 400
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=74.71 E-value=1.5e+02 Score=35.56 Aligned_cols=108 Identities=14% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCCEEEEEecCCeEEEEECCC-------CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc---e
Q psy4869 500 TAECVLTGGIDNDIKMWDLRT-------NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER---C 569 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s-------~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~---~ 569 (2435)
++.+++..+..|.++...+.. |.....+.. .+.+-.+....+...++..+.+|.+..+.+......++ -
T Consensus 113 ~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~G 191 (312)
T 1suu_A 113 DDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQG 191 (312)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCC
T ss_pred CCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCC
Confidence 356778888888888877642 222223333 45666666655567888999999999998864322222 2
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECC
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTT 611 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~ 611 (2435)
+..+.-. ....+..+..-.++..|+..+..|..+..++.
T Consensus 192 v~~i~L~---~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 192 VCGMKLK---EGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EECCCCC---TTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred eEeEEeC---CCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 2222211 12356666665566778888999998888864
No 401
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=73.09 E-value=1.6e+02 Score=35.19 Aligned_cols=149 Identities=13% Similarity=0.039 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCeEEEEECCC-------CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc---e
Q psy4869 500 TAECVLTGGIDNDIKMWDLRT-------NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER---C 569 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s-------~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~---~ 569 (2435)
++.+++..+.+|.++-..+.. +.....+..+ +.+-.+....+...|+..+.+|.+..++.......++ -
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~G 186 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTG 186 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCC
Confidence 456788899999998887642 2122223334 5666665555566788889999998888754322222 2
Q ss_pred EEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC---------cEEEEecCCCCCeeEEEEcCCCCEEEE
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR---------RIAYKLPGHNGSVNDVQFHPKEPIIMS 640 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~---------~~~~~l~~h~~~V~~l~fspd~~~Las 640 (2435)
+..+. ...+..+..+..-.++..|+..+..|.++-.++... .....+....+.+-.+....+...|+.
T Consensus 187 v~~i~---L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~ 263 (307)
T 1zi0_A 187 VRGIR---LGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMM 263 (307)
T ss_dssp EECCC---CCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred eEeEE---eCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEE
Confidence 22111 112245666655555677888899999888876321 111222222345544444334455666
Q ss_pred EECCCcEEEecC
Q psy4869 641 ASSDKTIYLGES 652 (2435)
Q Consensus 641 gs~Dg~I~vWd~ 652 (2435)
.+.+|.+.-...
T Consensus 264 ~t~~g~~ir~~~ 275 (307)
T 1zi0_A 264 ITDAGTLVRTRV 275 (307)
T ss_dssp EESSCCEEEEEG
T ss_pred EcCCCcEEEEec
Confidence 667776654444
No 402
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.46 E-value=1.1e+02 Score=36.25 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=86.5
Q ss_pred eEEEEEeCCCeEEEEeCCCC------cceEeecCcccEEEEEECCCCCEEEEEecCCeEEEEECCC---------CcEEE
Q psy4869 461 LLIASGSDDCTVKVWDPRKK------NQAVSMNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRT---------NSVVQ 525 (2435)
Q Consensus 461 ~llasgs~Dg~I~vwD~~~~------~~~~~~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s---------~~~v~ 525 (2435)
..++..+.+|.++-..+..- .....+.....+..+........++..+..|.++.++... |....
T Consensus 81 ~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i 160 (276)
T 3no0_A 81 NRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 160 (276)
T ss_dssp SEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred CEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEE
Confidence 46777899999998876432 1222234455666666666677899999999998887532 22222
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc---eEEEEeCcccccccCeEEEEEcCCCCEEEEecCC
Q psy4869 526 KLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER---CVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSAD 602 (2435)
Q Consensus 526 ~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~---~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~D 602 (2435)
.+.. .+.|..+...+++..++..+..|.++...+..+....+ -+..+. -...+..+....+...++..+.+
T Consensus 161 ~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-----~~~~lv~~~~~~~~~~i~~~t~~ 234 (276)
T 3no0_A 161 KLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-----TKDTLVDLIPIKEEVELLITTKN 234 (276)
T ss_dssp CCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-----SSSCEEEEEEESSEEEEEEEETT
T ss_pred ccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-----CCCcEEEEEEeCCCCEEEEEcCC
Confidence 2332 35666666556677899999999999998865433222 222221 01234433332333455556666
Q ss_pred CeEEE--EECC
Q psy4869 603 KCVYI--WDTT 611 (2435)
Q Consensus 603 g~V~i--wd~~ 611 (2435)
|.+.. ++..
T Consensus 235 G~~ir~~~~~~ 245 (276)
T 3no0_A 235 GKAFYDKINQK 245 (276)
T ss_dssp SCEEEEEEEGG
T ss_pred CeEEEeeeCHH
Confidence 66655 6543
No 403
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.95 E-value=2.1e+02 Score=34.49 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=104.9
Q ss_pred CCCCEEEEEeCCCeEEEEecC---Cc-----eeeE---EEeeCCCCCeeEEEEcc---CCCEEEEEeCCCeEEEEECCCC
Q psy4869 372 PDGQYIASSGYDRQIFIWSVY---GE-----CENI---GVMSGHTGAVMDLKFST---DGCHIFTCSTDQTLAVWDLEKG 437 (2435)
Q Consensus 372 pdg~~Lasgs~Dg~I~iwd~~---~~-----~~~~---~~l~~h~~~V~~l~~s~---dg~~L~s~s~Dg~I~vwd~~tg 437 (2435)
.....|+.-+..|+++..... .. ..++ ..+. ....|..+..-. +..+++.++.+|.++--.+..-
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred CCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 344556666677776655432 11 0111 1111 234555554433 5779999999999999886542
Q ss_pred -------ceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCC--C---------CcceEeecCcccEEEEEECC
Q psy4869 438 -------QRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPR--K---------KNQAVSMNNTYQVTSVAFND 499 (2435)
Q Consensus 438 -------~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~--~---------~~~~~~~~~~~~v~sv~~sp 499 (2435)
.....++.. +.+..+.....+. .++..+..|.+..+... . +.....+.....|.++...+
T Consensus 130 ~~~~r~G~~~i~lke~-D~lv~~~~~~~~d-~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~ 207 (327)
T 3uc1_A 130 DSNRSGGIVAVNLRDN-DELVGAVLCSAGD-DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVR 207 (327)
T ss_dssp CCCCSSCEESCBCCTT-CCEEEEEEECTTC-EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECC
T ss_pred hccccCceEEEEECCC-CEEEEEEEecCCC-EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEEC
Confidence 111223332 2233332233333 34456677877666554 1 11122234455677777766
Q ss_pred CCCEEEEEecCCeEEEEECCCC-------cEEEEEe--cCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCC
Q psy4869 500 TAECVLTGGIDNDIKMWDLRTN-------SVVQKLR--GHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRP 562 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s~-------~~v~~l~--~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~ 562 (2435)
.+.+++..+..|.++.-.+..- +-+..++ .-.+.+-.+....+...++..+.+|.+..++...
T Consensus 208 ~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 208 EGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhh
Confidence 7779999999999988875421 2222222 2234565555544556777778888888887653
No 404
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=65.29 E-value=2e+02 Score=33.80 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=108.1
Q ss_pred CCeeEEEEccCCCEEEEEeCCCeEEEEECCCCceEEEEeccCccccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEe
Q psy4869 406 GAVMDLKFSTDGCHIFTCSTDQTLAVWDLEKGQRIKKMKGHSTFVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVS 485 (2435)
Q Consensus 406 ~~V~~l~~s~dg~~L~s~s~Dg~I~vwd~~tg~~v~~l~~h~~~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~ 485 (2435)
..|..|+.... +.+... ||.|+.|-....-.+..-......|..++.- ..+.++. . ||.|..|-......+..
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l-~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTCC
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEE-E-CCEEEEeeCCCCCCCCC
Confidence 46777776543 334445 8999999754321111000111223333322 2233433 4 89999998654322211
Q ss_pred -ecCcccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCC
Q psy4869 486 -MNNTYQVTSVAFNDTAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYV 564 (2435)
Q Consensus 486 -~~~~~~v~sv~~sp~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~ 564 (2435)
......|..++...+ +.++-. +|.|+.|-....-.+..-......|..|+...+- .+.-. ||.|..|-.....
T Consensus 97 P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~g 170 (282)
T 3qhy_B 97 PAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFG 170 (282)
T ss_dssp CGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTS
T ss_pred CcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCC
Confidence 112335666665433 344445 9999999765421111111122356666654332 22233 7999999765422
Q ss_pred CCCceEEEEeCcccccccCeEEEEEcCCCCEEEEecCCCeEEEEECCCC-cEEEEecCCCCCeeEEEEcCCCCEEEEEEC
Q psy4869 565 PGERCVKVMSGHQHNFEKNLLRCAWSVSGLYVTAGSADKCVYIWDTTTR-RIAYKLPGHNGSVNDVQFHPKEPIIMSASS 643 (2435)
Q Consensus 565 ~~~~~v~~~~~h~~~~~~~i~~v~~spdg~~Lasgs~Dg~V~iwd~~s~-~~~~~l~~h~~~V~~l~fspd~~~Lasgs~ 643 (2435)
.-.. .......+..++-.. .+.++- .||.|+.|-.... ++-.-. .....|..|+--.+. .++..
T Consensus 171 qlg~--------p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h-~~al~-- 235 (282)
T 3qhy_B 171 QTTV--------PAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWY-SLALK-- 235 (282)
T ss_dssp TTSC--------CGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSC-EEEEE--
T ss_pred CCCC--------ceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCE-EEEEE--
Confidence 1111 111123455555442 333333 5899999975432 221000 112346666654443 33333
Q ss_pred CCcEEEecCC
Q psy4869 644 DKTIYLGESP 653 (2435)
Q Consensus 644 Dg~I~vWd~~ 653 (2435)
||.|+.|-..
T Consensus 236 ~g~v~~wG~n 245 (282)
T 3qhy_B 236 NGKVIAWGSS 245 (282)
T ss_dssp TTEEEEESTT
T ss_pred CCEEEEecCC
Confidence 8999998765
No 405
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=64.03 E-value=1.6e+02 Score=34.71 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCeEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEccC-CceeEEEeccCCCEEEEEEccCCCEE
Q psy4869 1061 DTTVKIFFLDTFKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY-GDCHKSLLAHEDSVTGVTFVPKTHYF 1139 (2435)
Q Consensus 1061 dg~V~i~d~~~~~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~vWd~~t-~~~~~~l~~h~~~V~~v~fsp~~~~l 1139 (2435)
||.|..|-......+..-..-...|..|+...+.. +.-. ||.|..|-... ++.- .-......|..|+.... ..
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~ 153 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TA 153 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EE
T ss_pred CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EE
Confidence 77777775432111100011124688887765433 3334 99999997643 2221 11112345666665432 22
Q ss_pred EEEeCCCcEEEEeCCCcceeEEEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEccCCceeeEeeccCCCEEE
Q psy4869 1140 FTTSKDGRVKQWDADNFERIVTLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLLAHEDSVTG 1219 (2435)
Q Consensus 1140 ~s~s~Dg~V~iwD~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~~~~~~~~~h~~~V~~ 1219 (2435)
+.-. ||.|..|-.....++... ......|..++...+ ..++. .||.|+.|-....-.+..-......|..
T Consensus 154 ~~l~-~G~v~~wG~n~~gqlg~p------~~~~~~v~~i~~G~~-hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~ 223 (282)
T 3qhy_B 154 LAVK-NGGVIAWGDNYFGQTTVP------AEAQSGVDDVAGGIF-HSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSA 223 (282)
T ss_dssp EEEE-TTEEEEEECCTTSTTSCC------GGGGSSEEEEEECSS-EEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCE
T ss_pred EEEE-CCEEEEecCCCCCCCCCc------eecCCCeEEEEecCC-EEEEE--ECCeEEEEECCCCCCCCCCcccCCCceE
Confidence 2233 789999976543332110 112346777766533 23333 5899999986643222211112234555
Q ss_pred EEEeeCCCEEEEEECCCcEEEEECCC
Q psy4869 1220 VTFVPKTHYFFTTSKDGRVKQWDADN 1245 (2435)
Q Consensus 1220 i~~spd~~~lvsgs~Dg~I~vwD~~~ 1245 (2435)
|+.-.... ++. . ||.|..|-...
T Consensus 224 i~~G~~h~-~al-~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 224 IASGEWYS-LAL-K-NGKVIAWGSSR 246 (282)
T ss_dssp EEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred EEcCCCEE-EEE-E-CCEEEEecCCC
Confidence 55433322 222 2 77777775543
No 406
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=59.90 E-value=3.2e+02 Score=33.70 Aligned_cols=182 Identities=8% Similarity=0.084 Sum_probs=99.7
Q ss_pred cCCcEEEEeCCCC--ceeEEEeC-------CCeEEEEEEe---cC----CCEEEEEe-CCCeEEEEEccCCceeeccccc
Q psy4869 904 CASQVKIWNRPSL--SCLRTIDT-------GSYALSVCFV---PG----DRHVLVGT-KDGRLLIVDIGAGEILEDIPAH 966 (2435)
Q Consensus 904 ~~~~V~Iwd~~~~--~~~~~l~~-------~~~v~~vafs---pd----g~~Lavg~-~dg~V~vwd~~sg~~v~~~~~h 966 (2435)
|...+.+||+.+. +.+.++.. ......+.+. ++ +.++.+.. ..+.|.|+|+.+|+--+-...+
T Consensus 121 ~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~ 200 (381)
T 3q6k_A 121 HRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT 200 (381)
T ss_dssp CCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG
T ss_pred CCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC
Confidence 3457889999998 88877763 3445667776 22 44555554 4678999999988754433111
Q ss_pred ccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEE
Q psy4869 967 SQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCA 1046 (2435)
Q Consensus 967 ~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 1046 (2435)
|.++. ...+.. +|.- +....++..|
T Consensus 201 --------~~pd~---------~~~~~i---~G~~-----------------------------------~~~~~Gi~gI 225 (381)
T 3q6k_A 201 --------FKAER---------PTKFDY---GGKE-----------------------------------YEFKAGIFGI 225 (381)
T ss_dssp --------GSCCS---------CEEEEE---TTEE-----------------------------------EEECCCEEEE
T ss_pred --------Ccccc---------CcceEE---CCEE-----------------------------------eEeccCceEE
Confidence 12221 001111 1111 1224578899
Q ss_pred EEcCC----CCEEEEEECCCcEEEEEcC-----CC---eEEEEEecCC---cCEEEEEEc-CCCCEEEEEECCCcEEEEE
Q psy4869 1047 RVSPD----SKLLAVSLLDTTVKIFFLD-----TF---KFFISLYGHK---LPVLSLDMS-YDSTLIATGSGDRTVKVWG 1110 (2435)
Q Consensus 1047 ~~spd----g~~Lavg~~dg~V~i~d~~-----~~---~~~~~l~~h~---~~V~sl~~s-pdg~~L~Sgs~Dg~I~vWd 1110 (2435)
+++|+ ++.|.-.-..+ -++|.+. .. ..+.. .|.. ..-..+++. .+|.++++--..+.|..|+
T Consensus 226 aLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~ 303 (381)
T 3q6k_A 226 TLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWN 303 (381)
T ss_dssp EECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEE
T ss_pred EecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEe
Confidence 99998 77777765443 3344332 11 11111 1222 233455675 5677777777788899999
Q ss_pred ccC-C---ceeEEEec--cCCCEEEEEEccCCCEEEEE
Q psy4869 1111 LDY-G---DCHKSLLA--HEDSVTGVTFVPKTHYFFTT 1142 (2435)
Q Consensus 1111 ~~t-~---~~~~~l~~--h~~~V~~v~fsp~~~~l~s~ 1142 (2435)
... . +-...+.. .-.....+.+.+++.+.+..
T Consensus 304 ~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 304 TQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp TTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred CCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 865 1 11222221 22245667666555544433
No 407
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=57.91 E-value=3.1e+02 Score=32.97 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=89.6
Q ss_pred CcccEEEE-EECC--CCCEEEEEecCCeEEEEECCC--------CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEE
Q psy4869 488 NTYQVTSV-AFND--TAECVLTGGIDNDIKMWDLRT--------NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVR 556 (2435)
Q Consensus 488 ~~~~v~sv-~~sp--~g~~l~sgs~dg~V~lwD~~s--------~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~ 556 (2435)
....|..+ .... ++.+++.++.+|.++-..+.. +.....+.. .+.+-.+....+...|+..+.+|.+.
T Consensus 90 ~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~i 168 (323)
T 1wp5_A 90 RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYAL 168 (323)
T ss_dssp TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEE
T ss_pred CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEE
Confidence 33445554 3432 367899999999999887642 222222332 35666666655667888899999999
Q ss_pred EEEcCCCCCCCc---eEEEEeCcccccccCeEEEEEcCCCC-EEEEecCCCeEEEEECCC-------CcEEEEec---CC
Q psy4869 557 IWDIRPYVPGER---CVKVMSGHQHNFEKNLLRCAWSVSGL-YVTAGSADKCVYIWDTTT-------RRIAYKLP---GH 622 (2435)
Q Consensus 557 lWdl~~~~~~~~---~v~~~~~h~~~~~~~i~~v~~spdg~-~Lasgs~Dg~V~iwd~~s-------~~~~~~l~---~h 622 (2435)
.++.....+.++ -+..+.- ..+..+..+..-.++. .|+..+..|..+..++.. ++-+..+. ..
T Consensus 169 rf~~~ev~~~gR~a~GV~~i~L---~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~ 245 (323)
T 1wp5_A 169 WFDESEVSIVGVRAAGVKGMNL---KEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKAN 245 (323)
T ss_dssp EEEGGGSCBCCSSCCCEECCCC---CTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSS
T ss_pred EEEHHHCcccCCCCcCEEEEEe---CCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCC
Confidence 998764322222 2222221 1223566665444455 788888888888777643 12222221 22
Q ss_pred CCCeeEEEEcCCCCEEEEEECCCcEEEecC
Q psy4869 623 NGSVNDVQFHPKEPIIMSASSDKTIYLGES 652 (2435)
Q Consensus 623 ~~~V~~l~fspd~~~Lasgs~Dg~I~vWd~ 652 (2435)
...+..+....++..++..+.+|.+....+
T Consensus 246 ~~~l~~~~~v~~~~~i~~it~~g~~ir~~~ 275 (323)
T 1wp5_A 246 PHRISGFVVAQDSDTIYLQTEKSFIETIKV 275 (323)
T ss_dssp CCCEEEEEEECTTCEEEEEETTSCEEEEEG
T ss_pred CceEEEEEEeCCCCeEEEEeCCCeEEEEEh
Confidence 224443333333445666677776554444
No 408
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.91 E-value=3.5e+02 Score=33.23 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=78.8
Q ss_pred CCCEEEEEecCCeEEEEECCC-------CcEEEEEecCCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCCCCCCc---e
Q psy4869 500 TAECVLTGGIDNDIKMWDLRT-------NSVVQKLRGHSDTVTGLSLSPDGSYILSNAMDNTVRIWDIRPYVPGER---C 569 (2435)
Q Consensus 500 ~g~~l~sgs~dg~V~lwD~~s-------~~~v~~l~~h~~~V~~i~~spdg~~las~s~Dg~I~lWdl~~~~~~~~---~ 569 (2435)
.+.+|+.++..|.++...+.. +.....+.. .+.+-.+....+...|+..+.+|.+..++.......++ -
T Consensus 112 ~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~G 190 (370)
T 3l6v_A 112 DNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMGRTATG 190 (370)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred CCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccCCCCCC
Confidence 356888888888888776532 222222332 44555555555566788888888888887653222121 1
Q ss_pred EEEEeCcccccccCeEEEEEcC-----------------------------------CCCEEEEecCCCeEEEEECCCCc
Q psy4869 570 VKVMSGHQHNFEKNLLRCAWSV-----------------------------------SGLYVTAGSADKCVYIWDTTTRR 614 (2435)
Q Consensus 570 v~~~~~h~~~~~~~i~~v~~sp-----------------------------------dg~~Lasgs~Dg~V~iwd~~s~~ 614 (2435)
++.+.- .....+..+...+ ++.+|+..+..|..+...+....
T Consensus 191 V~~i~L---~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~ 267 (370)
T 3l6v_A 191 VRGIRL---AKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDVADNGDVAYILTATENGYGKRTPLAEYP 267 (370)
T ss_dssp EECCCC---CTTCCEEEEEEECCC-----------------------------------CEEEEEETTSEEEEEEGGGSC
T ss_pred eeeEEe---CCCCEEEEEEEeccccccccccccccccccccccccccccccccccccCCceEEEeeCCCCEEEEEHHHhc
Confidence 221111 1122344444333 45688999999998888764321
Q ss_pred -------EEE--EecCCCCCeeEEEEcCCCCEEEEEECCCcEEEec
Q psy4869 615 -------IAY--KLPGHNGSVNDVQFHPKEPIIMSASSDKTIYLGE 651 (2435)
Q Consensus 615 -------~~~--~l~~h~~~V~~l~fspd~~~Lasgs~Dg~I~vWd 651 (2435)
=+. .+....+.+-.+.+..+...|+..+..|.+.-..
T Consensus 268 ~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~ 313 (370)
T 3l6v_A 268 RKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTR 313 (370)
T ss_dssp CBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEE
T ss_pred ccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEee
Confidence 122 2222234455554444445555566666554433
No 409
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=53.17 E-value=5.6e+02 Score=34.47 Aligned_cols=238 Identities=12% Similarity=0.069 Sum_probs=119.5
Q ss_pred eEEE-EccCCCEEEEE-eCC----CeEEEEECCCCceEEE-Ee-ccCc------cccccCcccCCCeEEEEE--------
Q psy4869 409 MDLK-FSTDGCHIFTC-STD----QTLAVWDLEKGQRIKK-MK-GHST------FVNSCDPVRRGQLLIASG-------- 466 (2435)
Q Consensus 409 ~~l~-~s~dg~~L~s~-s~D----g~I~vwd~~tg~~v~~-l~-~h~~------~v~sv~~~~~~~~llasg-------- 466 (2435)
..+. ++||+++++.+ |.. ..++++|+++++.+.. +. ..+. ....+.|... ..++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcC
Confidence 4444 77888876653 322 3699999999876621 11 0000 0022266533 3444432
Q ss_pred --eCCCeEEEEeCCCCcc----eEeecCcccEEEEEECCCCCE-----EEEEe---cCCeEEEEECCC--CcEEEEEecC
Q psy4869 467 --SDDCTVKVWDPRKKNQ----AVSMNNTYQVTSVAFNDTAEC-----VLTGG---IDNDIKMWDLRT--NSVVQKLRGH 530 (2435)
Q Consensus 467 --s~Dg~I~vwD~~~~~~----~~~~~~~~~v~sv~~sp~g~~-----l~sgs---~dg~V~lwD~~s--~~~v~~l~~h 530 (2435)
+....|+.|.+.+... +..-....--.....++++++ ++..+ ....+++.|... ++. ..+...
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~ 289 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINMP 289 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCSC
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeecC
Confidence 1235688888776532 222222222334556667662 33333 225577777654 432 333222
Q ss_pred CCCEEEEEEcCCCCEEEEE----------ECCCcEEEEEcCCCCCC---CceEEEEeCcccccccCeEEEEEcCCCCEEE
Q psy4869 531 SDTVTGLSLSPDGSYILSN----------AMDNTVRIWDIRPYVPG---ERCVKVMSGHQHNFEKNLLRCAWSVSGLYVT 597 (2435)
Q Consensus 531 ~~~V~~i~~spdg~~las~----------s~Dg~I~lWdl~~~~~~---~~~v~~~~~h~~~~~~~i~~v~~spdg~~La 597 (2435)
.+. .+....++.+++.. ...+.|.+.|+....+. ......+-.+. ....+..+.|..+ .+++
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~l~~ 364 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT--ANEVFNFISTTKD-RVFL 364 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC--TTEEEEEEEECSS-CEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC--CCCeEEEEEEECC-EEEE
Confidence 221 12334455555532 13577888888753221 11122211121 1235677888865 5666
Q ss_pred EecCCC--eEEEEECCCCc-EEEE-ecCC-CCCeeEEEEcCCCC-EEEEEECC---CcEEEecCC
Q psy4869 598 AGSADK--CVYIWDTTTRR-IAYK-LPGH-NGSVNDVQFHPKEP-IIMSASSD---KTIYLGESP 653 (2435)
Q Consensus 598 sgs~Dg--~V~iwd~~s~~-~~~~-l~~h-~~~V~~l~fspd~~-~Lasgs~D---g~I~vWd~~ 653 (2435)
+...++ .|.++|+.+++ .+.. +.-. .+.|..+.+.+++. ++++.+.. +.++.+++.
T Consensus 365 ~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 365 ATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666666 46777776664 1222 2211 24566667777765 44444433 456666653
No 410
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=52.77 E-value=19 Score=38.56 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.5
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEee
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~ 2395 (2435)
..+||+.||||-.- ++.+|.+|=|=| | +||+-+..+
T Consensus 127 ~~gHA~av~Gya~~-~~~~~y~~WNPW---~--~~~~~~~a~ 162 (183)
T 1pxv_A 127 HLGHALAVVGNAKI-NDQEKLIYWNPW---D--TELSIQDAD 162 (183)
T ss_dssp CCEEEEEEEEEEEE-TTEEEEEEECTT---C--SSCEEEETT
T ss_pred cCceeEEEEeeeec-CCCeEEEEeCCc---c--CCcEeecCC
Confidence 56799999999976 477899996666 4 377777654
No 411
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=50.67 E-value=4.4e+02 Score=32.49 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=98.5
Q ss_pred cEEEEEccCC--ceeeEeec------cCCCEEEEEEe---eC----CCEEEEEE-CCCcEEEEECCCCceEEEEeeCCcc
Q psy4869 1195 TVKVWGLDYG--DCHKSLLA------HEDSVTGVTFV---PK----THYFFTTS-KDGRVKQWDADNFERIVTLHFNPNV 1258 (2435)
Q Consensus 1195 ~V~iwd~~t~--~~~~~~~~------h~~~V~~i~~s---pd----~~~lvsgs-~Dg~I~vwD~~~~~~v~~~~~~~~~ 1258 (2435)
+|.+||+.++ +.++.+.- ....+..+.+. |+ +.++..+. ..+-|.|+|+.+.+.....+ ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~---~~ 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH---PT 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC---GG
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc---CC
Confidence 4667888887 76666542 13467888887 21 23333333 56778899998877655442 22
Q ss_pred cccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCC----cceeEEeec
Q psy4869 1259 YLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPD----SKLLAVSLL 1334 (2435)
Q Consensus 1259 ~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spd----g~~lavgs~ 1334 (2435)
+.+.....+. -+|.-. .....+..|+++|+ ++.|.....
T Consensus 201 ~~pd~~~~~~--i~G~~~-----------------------------------~~~~Gi~gIaLsp~~~~~~~~LYf~pl 243 (381)
T 3q6k_A 201 FKAERPTKFD--YGGKEY-----------------------------------EFKAGIFGITLGDRDSEGNRPAYYLAG 243 (381)
T ss_dssp GSCCSCEEEE--ETTEEE-----------------------------------EECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred CccccCcceE--ECCEEe-----------------------------------EeccCceEEEecCCcCCCCeEEEEEEC
Confidence 2232111110 011111 12356888999998 677776665
Q ss_pred CC-eEEEEEc---ccce---EEEEecCCC---CCeEEEEEe-cCCCEEEEEeCCCcEEEEeCCCC-------ceEEEecc
Q psy4869 1335 DT-TVKIFFL---DTFK---FFISLYGHK---LPVLSLDMS-YDSTLIATGSGDRTVKVWGLDYG-------DCHKSLLA 1396 (2435)
Q Consensus 1335 dG-~V~v~d~---~~~k---~i~~~~~h~---~~V~~la~s-pdg~~L~sGg~Dg~V~iwdl~~g-------k~~~~~~~ 1396 (2435)
.+ +++-... .... .+. ..+.+ ..-..++.+ .+|.+.++--..+.|..|+.... ..+..-.
T Consensus 244 ss~~ly~V~T~~L~~~~~~~~v~-~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~- 321 (381)
T 3q6k_A 244 SAIKVYSVNTKELKQKGGKLNPE-LLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS- 321 (381)
T ss_dssp SCSEEEEEEHHHHSSTTCCCCCE-EEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-
T ss_pred CCCcEEEEEHHHhhCcchhhceE-EeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-
Confidence 55 3333321 1111 111 11222 233456675 56777777777888999998751 2233222
Q ss_pred cccceEEEEEeeCCCEEEEEe
Q psy4869 1397 HEDSVTGVTFVPKTHYFFTTS 1417 (2435)
Q Consensus 1397 h~~~V~~laf~P~~~~laSgg 1417 (2435)
.-.|+..+.+.+++.+.+...
T Consensus 322 ~l~~pd~~~i~~~g~Lwv~sn 342 (381)
T 3q6k_A 322 RFVFGTDISVDSKGGLWFMSN 342 (381)
T ss_dssp TCCSEEEEEECTTSCEEEEEC
T ss_pred CccccCeEEECCCCeEEEEEC
Confidence 345888888877776555543
No 412
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.14 E-value=3.7e+02 Score=31.49 Aligned_cols=200 Identities=12% Similarity=-0.000 Sum_probs=105.7
Q ss_pred ceEEEEec-CCCcEEEEecCCcEE---EEeCCCCceeEEEeCCCeEEEEEEec--CCCEEEEEeCCCeEEEEEccCC---
Q psy4869 887 EVRALAFS-SDNLALVSACASQVK---IWNRPSLSCLRTIDTGSYALSVCFVP--GDRHVLVGTKDGRLLIVDIGAG--- 957 (2435)
Q Consensus 887 ~V~~la~s-~dg~~la~g~~~~V~---Iwd~~~~~~~~~l~~~~~v~~vafsp--dg~~Lavg~~dg~V~vwd~~sg--- 957 (2435)
.+..+... .....++....|.+. +|++........++.+..+.++.. + ++.+++..+.+|.+....+.+-
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~ 103 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYK 103 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTC
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhh
Confidence 34444333 333444455555444 333332211101555666766644 4 5678999999999998876542
Q ss_pred ---ceeecccccccceeEEEEecCCCCCCCcCCcceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeec
Q psy4869 958 ---EILEDIPAHSQELWSVAMLPDQFNPNVYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHT 1034 (2435)
Q Consensus 958 ---~~v~~~~~h~~~V~sv~~s~d~~~~~~~~p~~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 1034 (2435)
.....++. .+.+..+...... ..++..+..|.+..+......... +...-...
T Consensus 104 ~~G~~~i~lke-gD~l~~~~~~~~~----------~~ill~T~~G~~~r~~~~eip~~g----------R~a~Gv~~--- 159 (276)
T 3no0_A 104 AQGMPIIKLTE-GDEVVSIASSVDE----------THILLFTKKGRVARFSVREVPPST----------PGARGVQG--- 159 (276)
T ss_dssp STTEECSCCCT-TCCEEEEEECCSS----------CEEEEEETTSEEEEEEGGGSCBCC----------TTCCCEEC---
T ss_pred cCCeEEEecCC-CCEEEEEEEeCCC----------CEEEEEECCCEEEEEEhhhCCCcC----------CCCCCEEE---
Confidence 12222222 2355554444322 367777888998888764322110 00000011
Q ss_pred cccccCCCEEEEEEcCCCCEEEEEECCCcEEEEEcCCC-------eEEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy4869 1035 RTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF-------KFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVK 1107 (2435)
Q Consensus 1035 ~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d~~~~-------~~~~~l~~h~~~V~sl~~spdg~~L~Sgs~Dg~I~ 1107 (2435)
..+...+.|..+...+++..|+..+..|.++...+... +-+..+ ...+.+..+....+...++..+.+|.+.
T Consensus 160 i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~i 238 (276)
T 3no0_A 160 IKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAF 238 (276)
T ss_dssp CCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEE
T ss_pred EccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEE
Confidence 11233466666665666778888899999999886532 222222 2233454443333334566667777777
Q ss_pred E--EEcc
Q psy4869 1108 V--WGLD 1112 (2435)
Q Consensus 1108 v--Wd~~ 1112 (2435)
. ++..
T Consensus 239 r~~~~~~ 245 (276)
T 3no0_A 239 YDKINQK 245 (276)
T ss_dssp EEEEEGG
T ss_pred EeeeCHH
Confidence 6 6654
No 413
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=47.50 E-value=20 Score=38.37 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=27.1
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEe
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRR 2394 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r 2394 (2435)
+.+||+.||||-.-.+|.+|.++=|=| .++++-+..
T Consensus 117 ~~gHAlav~Gy~~~~ng~~~y~~WNPW-----~~~~~~~s~ 152 (174)
T 1cv8_A 117 HAGHAMAVVGNAKLNNGQEVIIIWNPW-----DNGFMTQDA 152 (174)
T ss_dssp CCEEEEEEEEEEEETTSCEEEEEECTT-----CSSCEEEET
T ss_pred CCceeEEEEeeeeecCCceEEEEeCCc-----cCCcEEecC
Confidence 457999999999866888999996666 345554443
No 414
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=45.10 E-value=23 Score=41.96 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=26.0
Q ss_pred ccceEEEEEEeccCCCCcceEEEEccCCCCcCCCceEEEEee
Q psy4869 2354 RYIHSVKIIGWGKSSQNEPYWLCTNSYNQGWGEQGLFKIRRG 2395 (2435)
Q Consensus 2354 ~~~Hav~iVGyg~~~~g~~yWiikNSWG~~WG~~Gy~~i~r~ 2395 (2435)
+.+||+.||||-.- ++.+|.++=|=| |. +|+-+...
T Consensus 303 ~~gHAlavvGyA~~-~~~~~y~~WNPW---~~--~~~~~sa~ 338 (367)
T 1x9y_A 303 HLGHALAVVGNAKI-NDQEKLIYWNPW---DT--ELSIQDAD 338 (367)
T ss_dssp CCSEEEEEEEEEEE-TTEEEEEEECTT---CS--SCEEEETT
T ss_pred cCceeEEEEecccc-CCCcEEEEecCc---cC--CceeecCC
Confidence 46799999999765 478899995554 54 36666553
No 415
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.37 E-value=2.4e+02 Score=39.63 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEEECCCeEEEEEcccccccccccccccccccccceeeeeecccccccccEEEEEecCCcceeEEeecCCeEEEEEcc
Q psy4869 1265 QVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLD 1344 (2435)
Q Consensus 1265 ~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~ 1344 (2435)
.+.+-...+.++...++ ...-..........--..........+.+.+-.+.+|+ .++++..||.+--.+.+
T Consensus 128 ~v~vit~~~~Ly~l~l~------~~~f~~~~~~~~~~W~~~~~p~~f~~r~p~~l~av~~~--~l~Vsl~dGgLlrl~r~ 199 (950)
T 4gq2_M 128 IIYAITHARVLYYIRLS------KTWFQLPDARLDDDWCLCYRPISFLNQKPDLMAAISTS--EICVSFFNGGLTKIILN 199 (950)
T ss_dssp EEEEEETTCCEEEEEEC------THHHHSTTCCCCTTSEEEECCGGGTTSCEEEEEECSSS--EEEEEETTSCEEEEEEE
T ss_pred EEEEEcCCCCEEEEEEC------HHHccCccccccccccccccCcCccCCCceEEEEEcCC--eEEEEECCCCEEEEEec
Q ss_pred c------------------------ceEEEEecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEeCCCCceEEEec-----
Q psy4869 1345 T------------------------FKFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLDYGDCHKSLL----- 1395 (2435)
Q Consensus 1345 ~------------------------~k~i~~~~~h~~~V~~la~spdg~~L~sGg~Dg~V~iwdl~~gk~~~~~~----- 1395 (2435)
. .+....-......+.+++..++..++++-+.|+++|+|++.+++|+....
T Consensus 200 ~~~~~~~~~~f~~~s~~~sl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~ 279 (950)
T 4gq2_M 200 PKDASHYEQHIDDSSYLFSLKKYLSLQAFKADYRSPNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTI 279 (950)
T ss_dssp TTTTEEEEEEECCCCCCCBCC-------CCSSCCCTTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCC
T ss_pred CCCCCcceeeecCCcHHHhhhhhcccccCCCCCCCcceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccC
Q ss_pred --ccccceEEEEEeeCC--CEEEEEeCCCcEEEEEC
Q psy4869 1396 --AHEDSVTGVTFVPKT--HYFFTTSKDGRVKQWDA 1427 (2435)
Q Consensus 1396 --~h~~~V~~laf~P~~--~~laSgg~Dg~V~lWd~ 1427 (2435)
........+.-.+.. ..+.+-..+|.+++|.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 280 LPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred CccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
No 416
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=35.73 E-value=9.5e+02 Score=32.16 Aligned_cols=95 Identities=11% Similarity=0.057 Sum_probs=51.8
Q ss_pred CCCcEEEEEccCCc-------eeEE-Ee-ccCCCEEEEEEccCCCEEEEEeCCCc--EEEEeCCCcc-eeEE-EEEEEee
Q psy4869 1102 GDRTVKVWGLDYGD-------CHKS-LL-AHEDSVTGVTFVPKTHYFFTTSKDGR--VKQWDADNFE-RIVT-LHFFISL 1168 (2435)
Q Consensus 1102 ~Dg~I~vWd~~t~~-------~~~~-l~-~h~~~V~~v~fsp~~~~l~s~s~Dg~--V~iwD~~~~~-~~~~-~~~~~~~ 1168 (2435)
..+.|.+.++..+. .... +. .....+..+.|..+ ..+++...++. |.++|+.++. .... +. +
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----l 392 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----L 392 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEEC----C
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccC----C
Confidence 46789999987642 2233 32 23346778888854 56666666664 5666665443 1111 11 1
Q ss_pred cccccCeEEEEEeCCCCE-EEEEe---CCCcEEEEEcc
Q psy4869 1169 YGHKLPVLSLDMSYDSTL-IATGS---GDRTVKVWGLD 1202 (2435)
Q Consensus 1169 ~~h~~~V~~l~~s~dg~~-l~sgs---~Dg~V~iwd~~ 1202 (2435)
...+.+......+++.. +++.+ .-+.+..+|+.
T Consensus 393 -p~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 393 -PYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp -CSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred -CCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 11244555555566543 33333 23567777776
No 417
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=29.94 E-value=7.6e+02 Score=29.26 Aligned_cols=198 Identities=13% Similarity=0.017 Sum_probs=110.8
Q ss_pred ceEEEEEeCCCeEEEEEcccccccccccccccccccccceeeeeeccccccCCCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy4869 989 QIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLLHTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFF 1068 (2435)
Q Consensus 989 ~~~l~sgs~Dg~V~lW~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~spdg~~Lavg~~dg~V~i~d 1068 (2435)
...+++.+.+|.|+--.++.....+.. ..-+. ...+.-.+.+..+........++..+..|.++-+.
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~----------~~g~~---~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~ 74 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTG----------GKGLS---SFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLIN 74 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSS----------CCCEE---CCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEE
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccC----------CCCce---ecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEE
Confidence 357888899999998776532211100 00000 01122334455555555566777777788887776
Q ss_pred cCCCeEEE------------EEecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEEccCCc-------eeEEEeccCCC
Q psy4869 1069 LDTFKFFI------------SLYGHKLPVLSLDMSY---DSTLIATGSGDRTVKVWGLDYGD-------CHKSLLAHEDS 1126 (2435)
Q Consensus 1069 ~~~~~~~~------------~l~~h~~~V~sl~~sp---dg~~L~Sgs~Dg~I~vWd~~t~~-------~~~~l~~h~~~ 1126 (2435)
........ .+. ....|.++...+ +...|+..+..|.++...+..-. ....+.. .+.
T Consensus 75 ~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~ 152 (312)
T 1suu_A 75 AYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDF 152 (312)
T ss_dssp GGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCC
T ss_pred HHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCE
Confidence 54221110 011 123455554332 45678889999999998874321 1112222 455
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCcceeE----EEEEEEeecccccCeEEEEEeCCCCEEEEEeCCCcEEEEEcc
Q psy4869 1127 VTGVTFVPKTHYFFTTSKDGRVKQWDADNFERIV----TLHFFISLYGHKLPVLSLDMSYDSTLIATGSGDRTVKVWGLD 1202 (2435)
Q Consensus 1127 V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~~----~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~ 1202 (2435)
+-.+....++..++..+.+|.+..+....-.... -.. ...+ .....|..+..-.++..+++.+..|..+..++.
T Consensus 153 lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~-~i~L-~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 153 VTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVC-GMKL-KEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp EEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEE-CCCC-CTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeE-eEEe-CCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 6666555556678888889999988865421110 000 0011 124456666555566678888888988888875
Q ss_pred C
Q psy4869 1203 Y 1203 (2435)
Q Consensus 1203 t 1203 (2435)
.
T Consensus 231 e 231 (312)
T 1suu_A 231 K 231 (312)
T ss_dssp G
T ss_pred H
Confidence 4
No 418
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.82 E-value=1.1e+03 Score=28.67 Aligned_cols=241 Identities=12% Similarity=0.082 Sum_probs=121.6
Q ss_pred CeEEEEEeCCCCEEEEEeCCCcEEEEEccCC-c-------e---eeEeec-cCCCEEEEEEeeCCCEEEEEECCCcEEEE
Q psy4869 1174 PVLSLDMSYDSTLIATGSGDRTVKVWGLDYG-D-------C---HKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQW 1241 (2435)
Q Consensus 1174 ~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t~-~-------~---~~~~~~-h~~~V~~i~~spd~~~lvsgs~Dg~I~vw 1241 (2435)
.+..++.. ..+.+.-..||.|+.|-.... + . ...+.. ....+..++......+.+.-..||.|..|
T Consensus 54 ~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 54 RPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred ceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 45555443 445566678899999965431 1 0 111111 22345556666666777788899999999
Q ss_pred ECCCC--------ceEEEEeeCCc-------ccccCceEEEEEECCCeEEEEEcccccccccccccccccccccceeeee
Q psy4869 1242 DADNF--------ERIVTLHFNPN-------VYLPLQIQVVTGGGDKSVKLWQLELVSVNREADEETKDVSRSHKVLSLL 1306 (2435)
Q Consensus 1242 D~~~~--------~~v~~~~~~~~-------~~~~~~~~lv~g~~d~~v~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~ 1306 (2435)
-.... ........-.. .........+.-..++.|+.|-............. ....|.
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~--------~~~~p~ 203 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE--------DQLKPK 203 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC--------CEEEEE
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc--------ccccce
Confidence 65421 11111111000 00111223444567899999975432211111100 011111
Q ss_pred ecccccccccEEEEEecCCcceeEEeecCCeEEEEEcccc-e---------EE-EEecCC-CCCeEEEEEecCCCEEEEE
Q psy4869 1307 HTRTLKLEEQVLCARVSPDSKLLAVSLLDTTVKIFFLDTF-K---------FF-ISLYGH-KLPVLSLDMSYDSTLIATG 1374 (2435)
Q Consensus 1307 ~~~~~~~~~~i~~ia~spdg~~lavgs~dG~V~v~d~~~~-k---------~i-~~~~~h-~~~V~~la~spdg~~L~sG 1374 (2435)
.. .......+..+++.....+.++-..+|.|+.|-.... + .. ..+... ...|..++.. ..+.+.-
T Consensus 204 ~v-~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~al 280 (389)
T 3kci_A 204 LV-EALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVAL 280 (389)
T ss_dssp EC-GGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEE
T ss_pred Ee-cccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEE
Confidence 11 1112345777777554456666778999998865431 1 11 111111 1235555543 3344445
Q ss_pred eCCCcEEEEeCCC-Cce----------EEEecc-cccceEEEEEeeCCCEEEEEeCCCcEEEEECCC
Q psy4869 1375 SGDRTVKVWGLDY-GDC----------HKSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN 1429 (2435)
Q Consensus 1375 g~Dg~V~iwdl~~-gk~----------~~~~~~-h~~~V~~laf~P~~~~laSgg~Dg~V~lWd~~~ 1429 (2435)
..||.|+.|-... +++ ...... ....|..|+.-. .+.+....||.|..|=...
T Consensus 281 t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 281 TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETTCCEEEEECCT
T ss_pred eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCCCCEEEeeCCC
Confidence 6789999996532 111 111111 123577777643 3445557899999998765
No 419
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=22.74 E-value=1.1e+03 Score=28.66 Aligned_cols=156 Identities=14% Similarity=0.101 Sum_probs=79.5
Q ss_pred CEEEEEEcCCCCEEEEEECCCcEEEEEcCC---------C-eEE-EEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy4869 1042 QVLCARVSPDSKLLAVSLLDTTVKIFFLDT---------F-KFF-ISLYG-HKLPVLSLDMSYDSTLIATGSGDRTVKVW 1109 (2435)
Q Consensus 1042 ~v~~l~~spdg~~Lavg~~dg~V~i~d~~~---------~-~~~-~~l~~-h~~~V~sl~~spdg~~L~Sgs~Dg~I~vW 1109 (2435)
.|..++. ...+.++-..+|.|..|-... . ... ..+.. ....|..++......+.+.-..||.|..|
T Consensus 160 ~i~~va~--G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~w 237 (389)
T 3kci_A 160 EVVDVAA--GGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSW 237 (389)
T ss_dssp CEEEEEE--CSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEE
T ss_pred eEEEEEe--CcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEE
Confidence 3444443 334555556678888885321 0 111 11111 23457777765433566667889999999
Q ss_pred EccC-Cc---------ee-EEEec-cCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCccee------EEEEEEEeeccc
Q psy4869 1110 GLDY-GD---------CH-KSLLA-HEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADNFERI------VTLHFFISLYGH 1171 (2435)
Q Consensus 1110 d~~t-~~---------~~-~~l~~-h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~~~~~------~~~~~~~~~~~h 1171 (2435)
-... ++ .. ..+.. ....|..|+.- ....++-..||.|..|=.....++ ....+.......
T Consensus 238 G~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~ 315 (389)
T 3kci_A 238 GDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQ 315 (389)
T ss_dssp ECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCC
Confidence 7532 11 11 11111 12246565553 344555578899999965432111 111111111112
Q ss_pred ccCeEEEEEeCCCCEEEEEeCCCcEEEEEccC
Q psy4869 1172 KLPVLSLDMSYDSTLIATGSGDRTVKVWGLDY 1203 (2435)
Q Consensus 1172 ~~~V~~l~~s~dg~~l~sgs~Dg~V~iwd~~t 1203 (2435)
...|..++.. ..+.++-..||.|+.|-...
T Consensus 316 ~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 316 GKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred CCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 2346666553 34455557889999997654
No 420
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.73 E-value=1e+03 Score=27.99 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=75.3
Q ss_pred CCCEEEEEECCCcEEEEEccCCceeE---------EEeccCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC---ccee-
Q psy4869 1093 DSTLIATGSGDRTVKVWGLDYGDCHK---------SLLAHEDSVTGVTFVPKTHYFFTTSKDGRVKQWDADN---FERI- 1159 (2435)
Q Consensus 1093 dg~~L~Sgs~Dg~I~vWd~~t~~~~~---------~l~~h~~~V~~v~fsp~~~~l~s~s~Dg~V~iwD~~~---~~~~- 1159 (2435)
+...+++.+.+|.|+--.+..-+... .++ ..+.+..+........|+..+..|.++.+.... ....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 45577888999999877664322111 111 233444444444566677777788877665432 1110
Q ss_pred EEEE--EEEeecccccCeEEEEEe---CCCCEEEEEeCCCcEEEEEccCCc-------eeeEeeccCCCEEEEEEeeCCC
Q psy4869 1160 VTLH--FFISLYGHKLPVLSLDMS---YDSTLIATGSGDRTVKVWGLDYGD-------CHKSLLAHEDSVTGVTFVPKTH 1227 (2435)
Q Consensus 1160 ~~~~--~~~~~~~h~~~V~~l~~s---~dg~~l~sgs~Dg~V~iwd~~t~~-------~~~~~~~h~~~V~~i~~spd~~ 1227 (2435)
.-.+ ....+ .....|..+..- .++.+++..+..|.++...+.... ....+..+ +.+-.+....+..
T Consensus 81 ~G~~i~~~l~l-~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPL-EQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCC-CTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCC-CCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 0000 00001 223345555432 345678888999999998765322 11122233 4454444444445
Q ss_pred EEEEEECCCcEEEEEC
Q psy4869 1228 YFFTTSKDGRVKQWDA 1243 (2435)
Q Consensus 1228 ~lvsgs~Dg~I~vwD~ 1243 (2435)
.++..+.+|.+..++.
T Consensus 159 ~i~l~T~~G~~irf~~ 174 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKE 174 (307)
T ss_dssp EEEEEETTSEEEEEEG
T ss_pred EEEEECCCCcEEEEEH
Confidence 5666666666655544
No 421
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=21.30 E-value=1.6e+03 Score=30.18 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred CCcEEEEEECCC-CCEEEEEeCCCeEEEEecCCceeeEEEeeC-----CCCCeeEEEEcc-CCCEEEEEeCCC-----eE
Q psy4869 362 GGEIFCSKYHPD-GQYIASSGYDRQIFIWSVYGECENIGVMSG-----HTGAVMDLKFST-DGCHIFTCSTDQ-----TL 429 (2435)
Q Consensus 362 ~~~V~~l~fspd-g~~Lasgs~Dg~I~iwd~~~~~~~~~~l~~-----h~~~V~~l~~s~-dg~~L~s~s~Dg-----~I 429 (2435)
.+.|.+|+++|. ...++.++..+.|...+-.+..=....... ....|.+|+++| +...++++..+. ..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Q ss_pred EEEECCCCceEEEEeccCc---------cccccCcccCCCeEEEEEeCCCeEEEEeCCCCcceEeecCc------ccEEE
Q psy4869 430 AVWDLEKGQRIKKMKGHST---------FVNSCDPVRRGQLLIASGSDDCTVKVWDPRKKNQAVSMNNT------YQVTS 494 (2435)
Q Consensus 430 ~vwd~~tg~~v~~l~~h~~---------~v~sv~~~~~~~~llasgs~Dg~I~vwD~~~~~~~~~~~~~------~~v~s 494 (2435)
.+...+.|+.-..+..... .+..+++.|.++..+..+...+.|..=+=....-....... ..+..
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Q ss_pred EEECC-CCCEEEEEecCCeEEEEECCCCcEEEEEecCCCCE------------------EEEEEcCCCCEEEEE------
Q psy4869 495 VAFND-TAECVLTGGIDNDIKMWDLRTNSVVQKLRGHSDTV------------------TGLSLSPDGSYILSN------ 549 (2435)
Q Consensus 495 v~~sp-~g~~l~sgs~dg~V~lwD~~s~~~v~~l~~h~~~V------------------~~i~~spdg~~las~------ 549 (2435)
+.++| ++..++++..+........+.++.-..+.+-.... ..+.+.|+...|+.+
T Consensus 174 i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~ 253 (789)
T 1sqj_A 174 VIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPG 253 (789)
T ss_dssp EEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCS
T ss_pred EEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCC
Q ss_pred ---ECCCcEEEEE
Q psy4869 550 ---AMDNTVRIWD 559 (2435)
Q Consensus 550 ---s~Dg~I~lWd 559 (2435)
+.++.|..-+
T Consensus 254 p~~g~~g~l~~S~ 266 (789)
T 1sqj_A 254 PWGVTFGEVWRQN 266 (789)
T ss_dssp SSCCCCCCEEEEE
T ss_pred CCCCCCceEEEEe
No 422
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=20.00 E-value=2.1e+02 Score=37.63 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=44.3
Q ss_pred cEEEEEECCCCCEEEEEecC------------CeEEEEECCCCcEEEEEecCC-CCEEEEEEcCCCCEEEEE
Q psy4869 491 QVTSVAFNDTAECVLTGGID------------NDIKMWDLRTNSVVQKLRGHS-DTVTGLSLSPDGSYILSN 549 (2435)
Q Consensus 491 ~v~sv~~sp~g~~l~sgs~d------------g~V~lwD~~s~~~v~~l~~h~-~~V~~i~~spdg~~las~ 549 (2435)
..-.|+|+|.|+++++-..+ ..+.+.+..+++..+-+.++. ..++.++|+||++.|...
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34678999999977765432 346777888888877776654 589999999999887764
Done!