Query psy4871
Match_columns 494
No_of_seqs 452 out of 1672
Neff 11.0
Searched_HMMs 29240
Date Fri Aug 16 19:57:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4871.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4871hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 5.5E-46 1.9E-50 369.6 31.7 403 48-466 9-484 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2.5E-34 8.5E-39 282.4 26.7 370 48-450 25-411 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.5E-33 5.2E-38 275.8 30.4 347 49-450 24-409 (438)
4 2gfp_A EMRD, multidrug resista 100.0 1.2E-31 4E-36 256.7 14.5 340 54-447 3-351 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.1E-28 1.1E-32 241.7 24.2 357 83-447 48-447 (491)
6 2xut_A Proton/peptide symporte 99.9 4.2E-25 1.4E-29 220.9 18.6 360 83-447 42-466 (524)
7 2cfq_A Lactose permease; trans 99.9 3.9E-26 1.3E-30 221.3 6.1 337 68-449 24-376 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.5E-12 5.3E-17 127.1 11.7 157 66-224 267-433 (451)
9 2cfq_A Lactose permease; trans 99.3 5.7E-12 2E-16 121.6 7.3 141 88-228 258-404 (417)
10 4aps_A DI-OR tripeptide H+ sym 99.2 3.3E-11 1.1E-15 119.0 11.4 141 83-223 313-470 (491)
11 3o7q_A L-fucose-proton symport 99.2 9.7E-11 3.3E-15 113.8 13.5 139 83-224 289-432 (438)
12 4gc0_A D-xylose-proton symport 99.2 2E-10 6.9E-15 113.4 14.1 154 71-228 297-467 (491)
13 2gfp_A EMRD, multidrug resista 98.8 9.9E-09 3.4E-13 97.3 9.3 133 302-447 16-149 (375)
14 2xut_A Proton/peptide symporte 98.8 4.7E-08 1.6E-12 97.2 13.5 134 302-447 28-173 (524)
15 2g9p_A Antimicrobial peptide l 57.0 4.3 0.00015 19.5 1.0 14 108-121 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=5.5e-46 Score=369.61 Aligned_cols=403 Identities=21% Similarity=0.292 Sum_probs=320.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCC--------CCCchhHHHHHHHHhHhhhhhchHhhhhhhCch
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPM--------SPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK 119 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr 119 (494)
..|.+.++++++.+++|+|.+.++..+|.+.+ +++. +..+.|++.+++.+|+.+|++++|+++||+|||
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk 85 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 46777788889999999999999998888774 4422 234578999999999999999999999999999
Q ss_pred hHHHhhHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHH
Q psy4871 120 WSLLMTGPITTASWIIAM------------------YSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGT 181 (494)
Q Consensus 120 ~~l~~~~~~~~i~~~~~~------------------~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 181 (494)
++++++.+++.+++++++ +++|++.++++|+++|++.|+..+....+++|+.|+++|++..+
T Consensus 86 ~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~ 165 (491)
T 4gc0_A 86 DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVS 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHH
Confidence 999999999999999998 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh------------hhhHHHHHHHHHHHHHHHHHhhccCcchhHHHhhCChHHHHHHHHHHhc
Q psy4871 182 LFQISCHLGILYTYVLGSE------------LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 249 (494)
Q Consensus 182 ~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~ 249 (494)
+.+.+..+|.++++.++.. ..||+.+.+..++.++..+..+++||||+|+..+++.+++++.+++.++
T Consensus 166 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~ 245 (491)
T 4gc0_A 166 FNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMG 245 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcC
Confidence 9999999999998887643 3688899998988888888889999999999999999999999988875
Q ss_pred CChhhHHHHHHHHHHcccccccccchhhhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc-chhHHHHH
Q psy4871 250 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL-PSDYISIL 328 (494)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 328 (494)
. +.. .++..+.++...+.++........ ..++..+......+.++.+.+.+..|.+.+.+..+... .......+
T Consensus 246 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (491)
T 4gc0_A 246 N-TLA-TQAVQEIKHSLDHGRKTGGRLLMF---GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTII 320 (491)
T ss_dssp H-HHH-HHHHHHHHHHHHHHHHHTTHHHHS---CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred C-chh-HHHHHHHHHHHHhhhhhhhHHHHh---cccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHH
Confidence 2 211 111111111111111111111111 12244555666667777788889999999988877654 45556677
Q ss_pred HHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchh
Q psy4871 329 FAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFT 408 (494)
Q Consensus 329 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (494)
.++..+++.++++++.||+|||+.+..+...+.++++.++...... ...+..++..+++..+++.++.++.+
T Consensus 321 ~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 321 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--------APGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--------cchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888999999999999999999999999888888887776554332 34445556666667777788888888
Q ss_pred hhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh----------------------------------hcCCCHH
Q psy4871 409 PLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK----------------------------------HIGKTFN 454 (494)
Q Consensus 409 ~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~----------------------------------~~~~~~~ 454 (494)
.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+ |||+++|
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLe 472 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 472 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHH
Confidence 999999999999999999999999999998887765533 9999999
Q ss_pred HHHHHHhcCccc
Q psy4871 455 EIQYMFKYGKNE 466 (494)
Q Consensus 455 ~~~~~~~~~~~~ 466 (494)
|+++.+++++++
T Consensus 473 ei~~~f~~~~~~ 484 (491)
T 4gc0_A 473 ELEALWEPETKK 484 (491)
T ss_dssp HHGGGTC-----
T ss_pred HHHHHhCCCCcc
Confidence 999988765443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.5e-34 Score=282.44 Aligned_cols=370 Identities=11% Similarity=0.052 Sum_probs=274.8
Q ss_pred hhHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHH
Q psy4871 48 GRFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGP 127 (494)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~ 127 (494)
.++.....++++.+..+++.....+.+|.+.+ ++ .++.+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 46777778888888999999999999999995 88 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH----HhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh---
Q psy4871 128 ITTASWIIAMY----SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE--- 200 (494)
Q Consensus 128 ~~~i~~~~~~~----a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--- 200 (494)
+.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|.++++.++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999988865
Q ss_pred -hh-hHHHHHHHHHHHHHHHHH-hhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh
Q psy4871 201 -LS-YMNYLTYSLIIPIIFTVT-FMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE 277 (494)
Q Consensus 201 -~~-w~~~f~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (494)
.+ ||+.|++.++++++..+. .+++||+|+....+.+.+. .+ +.+.+.++ +++.+...++...++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~-~~~~~~~~~~~~~~~ 247 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KN-DYPDDYNE-KAEQELTAKQIFMQY 247 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CC-C--------------CCTHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cc-cccccchh-hhhcccccccchHHH
Confidence 47 999999999888776554 4778888754321111100 00 00000000 000000001111233
Q ss_pred -hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhccc--CchhH
Q psy4871 278 -FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRA--GRRVL 352 (494)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~ 352 (494)
++++..+ ...+..+........+..|.|.++++ .|.+. +.+....+..++.+++.++.+++.||+ +||+.
T Consensus 248 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~ 322 (451)
T 1pw4_A 248 VLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 322 (451)
T ss_dssp TSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHcCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 4433332 22222222223356677888888877 46554 566777888899999999999999999 99988
Q ss_pred HHHhhHHHH-HHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHH
Q psy4871 353 FLVSSAGCS-LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILC 431 (494)
Q Consensus 353 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 431 (494)
+..+..+.. ++.+++.+. . ..+.+......++.+++.+. ..+..+.+..|.+|++.|+++.|+.+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 391 (451)
T 1pw4_A 323 TGVFFMTLVTIATIVYWMN---P-------AGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHHHHHTTSC---C-------TTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh---c-------ccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHH
Confidence 877766655 444333221 0 12334444455555554443 33445588999999999999999999999
Q ss_pred HH-HHHHHHHhhhchhhhcC
Q psy4871 432 TT-LGLISYKLFFLMDKHIG 450 (494)
Q Consensus 432 ~~-~~~i~~~i~~~l~~~~~ 450 (494)
.+ +..++|.+.|.+.+..+
T Consensus 392 ~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99 99999999999988443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.5e-33 Score=275.78 Aligned_cols=347 Identities=12% Similarity=0.108 Sum_probs=267.8
Q ss_pred hHHHHHHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHH
Q psy4871 49 RFGSEAHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPI 128 (494)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~ 128 (494)
.+....++++..+..+++.....+.+|.+.+ ++++++.+.|++.+++.+++.++++++|+++||+|||++++++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 4555666777778888888889999999996 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhhh---
Q psy4871 129 TTASWIIA---MYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELS--- 202 (494)
Q Consensus 129 ~~i~~~~~---~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--- 202 (494)
.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.++..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999 888999999999999999999999999999999999999999999999999999999999887743
Q ss_pred ---------------------------hHHHHHHHHHHHHHHHHHhhc--cCcchhHHHhhCChHHHHHHHHHHhcCChh
Q psy4871 203 ---------------------------YMNYLTYSLIIPIIFTVTFMF--MPESPYFYAIKNQEGKAIESLKWLRNKTAD 253 (494)
Q Consensus 203 ---------------------------w~~~f~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~~ 253 (494)
||+.|++.+++.++..+..++ .||+++.. + ++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~----------------~~ 241 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---H----------------SD 241 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---C----------------CC
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---c----------------cc
Confidence 999998887776666554433 45554210 0 00
Q ss_pred hHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHH-HHhc-CCCc-chhHHHHHH
Q psy4871 254 QVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTI-FASS-ETFL-PSDYISILF 329 (494)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~ 329 (494)
.++...+.++++ ++++..+... +..++ ..........|.|.+ +++. |.+. ..+....+.
T Consensus 242 ------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 304 (438)
T 3o7q_A 242 ------------AKQGSFSASLSRLARIRHWRWAV-LAQFC----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGT 304 (438)
T ss_dssp ------------SSTTSHHHHHHHHTTCSHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred ------------ccccchhhhHHHHHhChHHHHHH-HHHHH----HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHH
Confidence 000112233445 5554443222 22222 222245666788888 7765 6554 566777788
Q ss_pred HHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhh
Q psy4871 330 AIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTP 409 (494)
Q Consensus 330 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (494)
.++.+++.++.+++.||++||+.+..+.++.+++.+++.+. ++. ......++.+++.+. ..+..++
T Consensus 305 ~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~g~~~~~-~~~~~~~ 370 (438)
T 3o7q_A 305 MVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA------------GGH-VGLIALTLCSAFMSI-QYPTIFS 370 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC------------CHH-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc------------CCc-HHHHHHHHHHHHHHH-HHHHHHH
Confidence 89999999999999999999999988888877776655442 122 233344555555544 3456668
Q ss_pred hhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhhhcC
Q psy4871 410 LLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450 (494)
Q Consensus 410 ~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~~~~ 450 (494)
+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..+
T Consensus 371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 888999977 888888877 678999999999999988544
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.2e-31 Score=256.73 Aligned_cols=340 Identities=13% Similarity=0.094 Sum_probs=252.5
Q ss_pred HHHHHHHHHhhhcccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHH
Q psy4871 54 AHACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASW 133 (494)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~ 133 (494)
+++++..+..++......+.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||++++.+.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 79 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLAT 79 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 44566667778888888999999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHH
Q psy4871 134 IIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTY 209 (494)
Q Consensus 134 ~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~ 209 (494)
++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.++.. .+||+.|++
T Consensus 80 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 80 LVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876 489999999
Q ss_pred HHHHHHHHHH-HhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHH
Q psy4871 210 SLIIPIIFTV-TFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAF 287 (494)
Q Consensus 210 ~~~~~~~~~~-~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 287 (494)
.+++.++..+ ..+++||+++.. + ++++.+.++++ ++++..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~---~-------------------------------~~~~~~~~~~~~~~~~~~~~-- 203 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVD---A-------------------------------PRTRLLTSYKTLFGNSGFNC-- 203 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTT---C-------------------------------CCCCTTTCSTHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCcccCCCC---c-------------------------------ccccHHHHHHHHhcCcchHH--
Confidence 9888877766 446778875310 0 00112223444 44433332
Q ss_pred HHHHHHHHHHHccchHhHHHhHHHHHHh-cCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHH-HHHHH
Q psy4871 288 VFMAFLAVFRAFTGVQSIIAYANTIFAS-SETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAG-CSLFS 364 (494)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~ 364 (494)
..+..+...........+.|.++++ .|.+. ..+.......++.+++.++.+++.||++++ +..+... ...+.
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~ 278 (375)
T 2gfp_A 204 ---YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGL 278 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSS
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1111222222244555566666554 34433 455667778888889999999999998873 2222222 22222
Q ss_pred HHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy4871 365 FIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFL 444 (494)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~ 444 (494)
..+...... ..+.+...+..++.+++.+.. .+....+..|..| +.|+++.|+.+....+|..++|.+.+.
T Consensus 279 ~~~~~~~~~--------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 279 LMWIPDWFG--------VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp SSSHHHHHH--------HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHhhhc--------cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111100 113344445556666666553 4555688999998 789999999999999999999999998
Q ss_pred hhh
Q psy4871 445 MDK 447 (494)
Q Consensus 445 l~~ 447 (494)
+.+
T Consensus 349 l~~ 351 (375)
T 2gfp_A 349 LPQ 351 (375)
T ss_dssp HHH
T ss_pred Hhc
Confidence 865
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=3.1e-28 Score=241.69 Aligned_cols=357 Identities=11% Similarity=0.033 Sum_probs=233.9
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhh-hCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR-IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYV 161 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~ 161 (494)
++|.+..+.+++.+++.++..++++++|+++|| +|||++++.+.++.+++.++++++++++.++++|+++|++.+...+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 599999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhheecccCCCC--chhHHHHHHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhcc-Ccch----hH
Q psy4871 162 ISPMYLGEISETSI--RGTIGTLFQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM-PESP----YF 230 (494)
Q Consensus 162 ~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~-~esp----~~ 230 (494)
...+++.|++|+++ |+.+.++++.+.++|..++|.+++. .+||+.|++.++..++..+..++. |+.. +.
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 99999999999988 7778888889999999999888876 589999999877776665544322 2110 00
Q ss_pred HHhhCChHHHHHHHHH----------------HhcCChhhHHHHHH-HHHH------cc-cccccccchhhhcCcchHHH
Q psy4871 231 YAIKNQEGKAIESLKW----------------LRNKTADQVQSELQ-IIKQ------NT-SKNVERTNFREFMGRSNMKA 286 (494)
Q Consensus 231 l~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~~~-~~~~------~~-~~~~~~~~~~~~~~~~~~~~ 286 (494)
...+.+.++.++..++ ..+..+.+...... .... .. ..+..+.+..+.+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHH
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 0011122233332222 01100000000000 0000 00 00000000001000001111
Q ss_pred HHHHHHHHHHHHccchHhHHHhHHHHHHh-cCCC-cchhHHHHHHHHHHHHhhhhhhhhhcccCchhHHH-----HhhHH
Q psy4871 287 FVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETF-LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFL-----VSSAG 359 (494)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~ 359 (494)
.......... .......+.+.+..+ .+.+ ...+.......+..+++.++.+++.||++||+... .+..+
T Consensus 288 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 288 LFIAAVLFWA----IEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHH----HHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 1111111111 123344455666655 3333 35667777788888899999999999999886544 56666
Q ss_pred HHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Q psy4871 360 CSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439 (494)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~ 439 (494)
.+++.+++....... ..+...+.+......++.+++.+. ..+..+.++.|.+|++.|+++.|+.+....+|.++++
T Consensus 364 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~ 439 (491)
T 4aps_A 364 AGLSFLLMAIPGALY---GTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNA 439 (491)
T ss_dssp HHHHHTTTHHHHHHC---CCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---CCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554432211 000112444455555666666554 3456668999999999999999999999999999999
Q ss_pred Hhhhchhh
Q psy4871 440 KLFFLMDK 447 (494)
Q Consensus 440 ~i~~~l~~ 447 (494)
.+.+.+.+
T Consensus 440 ~~~~~~~~ 447 (491)
T 4aps_A 440 QLVTLYNA 447 (491)
T ss_dssp HHGGGGGG
T ss_pred HHHHHHhc
Confidence 99999876
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=4.2e-25 Score=220.95 Aligned_cols=360 Identities=12% Similarity=0.049 Sum_probs=211.7
Q ss_pred CCC------CCCCchhHHHHHHHHhHhhhhhchHhhhhhh-CchhHHHhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Q psy4871 83 PIP------MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI-GRKWSLLMTGPITTASWIIAMYSR-SVLGLYVMRTLQGF 154 (494)
Q Consensus 83 ~~~------~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~a~-~~~~l~~~r~l~G~ 154 (494)
+++ +++.+.+++.+++.++..+++++.|+++||+ |||++++++.++.+++.+++++++ +++.++++|++.|+
T Consensus 42 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 121 (524)
T 2xut_A 42 ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIAL 121 (524)
T ss_dssp SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 778 9999999999999999999999999999999 999999999999999999999999 99999999999999
Q ss_pred HhhhhhhhhhhheecccCCCCchhHHHH---HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHhhcc-Cc
Q psy4871 155 SMAAIYVISPMYLGEISETSIRGTIGTL---FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTFMFM-PE 226 (494)
Q Consensus 155 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~~~~-~e 226 (494)
+.+...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++. .+||+.|++.+++.++..+..++. ++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 201 (524)
T 2xut_A 122 GSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKR 201 (524)
T ss_dssp HHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred hccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999877666 888899999999988765 489999999888877666554433 22
Q ss_pred chhHHHhhCChHHHHHHH-HHHhcCC-hhhHHHHHHHHHH------c-------------------ccccccccchh---
Q psy4871 227 SPYFYAIKNQEGKAIESL-KWLRNKT-ADQVQSELQIIKQ------N-------------------TSKNVERTNFR--- 276 (494)
Q Consensus 227 sp~~l~~~~~~~~a~~~~-~~~~~~~-~~~~~~~~~~~~~------~-------------------~~~~~~~~~~~--- 276 (494)
.++....+.+..+..+.+ ...++.. +.+.......... . ..+...+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (524)
T 2xut_A 202 YIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLE 281 (524)
T ss_dssp CCCCC--------------------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHH
T ss_pred ccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHh
Confidence 110000000000100000 0001000 0000000000000 0 00000001110
Q ss_pred ---------hhcCcchHHHHHHHHHHHHHHHccchHhHHHhHHHHHHhcCCCc--chhHHHHHHHHHHHHhhhhhhhhh-
Q psy4871 277 ---------EFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFL--PSDYISILFAIILLVSIFPSTYYI- 344 (494)
Q Consensus 277 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~- 344 (494)
+.++++............... +........+.+.+....+.+. ..+.......+..+++..+.+++.
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (524)
T 2xut_A 282 RARKSHPDAAVDGVRSVLRILVLFALVTPF-WSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLY 360 (524)
T ss_dssp HSCCSCCSSSSTTTTTHHHHHHHHTTSHHH-HTTTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC--
T ss_pred hhhccccHhHHHHHHHHHHHHHHHHHHHHH-HHHHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhH
Confidence 111111111111111111111 1111111112222222222211 344444444455556666666553
Q ss_pred ---cccCc----hhHHHHhhHHHHHHHHHHHHHHHhhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCc
Q psy4871 345 ---DRAGR----RVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSS 417 (494)
Q Consensus 345 ---d~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 417 (494)
+|.++ ++.+..+.++.+++.+++....... ..+...+.+..++..++.+++.+. ..+..+.+..|..|+
T Consensus 361 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p~ 436 (524)
T 2xut_A 361 PAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM---DGGSALSIFWQILPYALLTFGEVL-VSATGLEFAYSQAPK 436 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTTTTTTT---TTTCCCCSHHHHHHHHHHHHHHHH-HHHHHTTTHHHHCCT
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcH
Confidence 44432 2345555555555554443321000 000012344445555566655544 345566889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 418 NMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 418 ~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+.||+++|+.++..++|++++|.+.+.+.+
T Consensus 437 ~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp TCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999876
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.92 E-value=3.9e-26 Score=221.26 Aligned_cols=337 Identities=11% Similarity=0.018 Sum_probs=203.3
Q ss_pred cchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHH---HHHHHhhH-H
Q psy4871 68 AWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWI---IAMYSRSV-L 143 (494)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~---~~~~a~~~-~ 143 (494)
+...+.+|.+.++ ++|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+.+++.. .+.+++.. .
T Consensus 24 ~~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (417)
T 2cfq_A 24 GAYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101 (417)
T ss_dssp HHHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556554323 7899999999999999999999999999999999999999998887765322 12233322 1
Q ss_pred HHHHHHHHHHhHhhhhhhhhhhheecccCC--CCchhHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHH
Q psy4871 144 GLYVMRTLQGFSMAAIYVISPMYLGEISET--SIRGTIGTLFQISCHLGILYTYVLGSE---LSYMNYLTYSLIIPIIFT 218 (494)
Q Consensus 144 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~---~~w~~~f~~~~~~~~~~~ 218 (494)
.++..+++.|++.+..++.....+.++.++ ++|+...+....+..+|..++|.++.. .+||+.|++.+++.++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181 (417)
T ss_dssp TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 234556666665555554444444444433 345666667666667777777777665 379999988877765555
Q ss_pred HHhhccCcchhHHHhhCChHHHHHHHHHHhcCChhhHHHHHHHHHHcccccccccchhh-hcCcchHHHHHHHHHHHHHH
Q psy4871 219 VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFRE-FMGRSNMKAFVFMAFLAVFR 297 (494)
Q Consensus 219 ~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (494)
+..++.+|+|+. +.+.+ ++.+ ..+++....++++ ++++..+...+..+...
T Consensus 182 ~~~~~~~~~~~~---~~~~~------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 233 (417)
T 2cfq_A 182 VLLFFAKTDAPS---SATVA------------NAVG----------ANHSAFSLKLALELFRQPKLWFLSLYVIGVS--- 233 (417)
T ss_dssp HHSCSSCCCCSC---SSCSS------------SSSS----------SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHcCccccc---ccccc------------cccc----------cccccccHHHHHHHhcCCchhhHHHHHHHHH---
Confidence 555544433210 00000 0000 0000001112334 45444432221111111
Q ss_pred HccchHhHHHhHHHHHHhcCCC----c-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHH
Q psy4871 298 AFTGVQSIIAYANTIFASSETF----L-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYY 372 (494)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
........+.|.++.+.... . ..+....+..++.+++.++.+++.||+|||+++..+..+.+++.+++.+
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--- 308 (417)
T 2cfq_A 234 --CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--- 308 (417)
T ss_dssp --HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT---
T ss_pred --HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH---
Confidence 11223334456665443110 1 1234455566778889999999999999999888777776665544432
Q ss_pred hhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHH-HHHHHHHHHHHHHhhhchhhhc
Q psy4871 373 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVI-NILCTTLGLISYKLFFLMDKHI 449 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~~~~i~~~i~~~l~~~~ 449 (494)
..+.+..++...+.+.+... ..+..+.+++|.+|++.|+++.++. +...++|++++|.+.|.+.+..
T Consensus 309 ---------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~ 376 (417)
T 2cfq_A 309 ---------ATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp ---------CCSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred ---------hccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence 12233333333333433322 2233457899999999999999995 8888999999999999998743
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=1.5e-12 Score=127.05 Aligned_cols=157 Identities=10% Similarity=0.047 Sum_probs=130.6
Q ss_pred cccchhhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhh--CchhHHHhhHHHHH-HHHHHHHHH--h
Q psy4871 66 SFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI--GRKWSLLMTGPITT-ASWIIAMYS--R 140 (494)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-i~~~~~~~a--~ 140 (494)
........+|.+.++ .++.++.+.+++.+...++..++.++.|++.||+ |||+.+..+.++.. ++.++..+. .
T Consensus 267 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T 1pw4_A 267 LRYGILDWSPTYLKE--VKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 344 (451)
T ss_dssp HHHHHHHHHHHHBTT--BSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhccc
Confidence 333345566666642 4899999999999999999999999999999999 99999988877776 666666555 3
Q ss_pred hHHHHHHHHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHH-HHHHHHHhhhh----hhhHHHHHHHHHHHH
Q psy4871 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHL-GILYTYVLGSE----LSYMNYLTYSLIIPI 215 (494)
Q Consensus 141 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~----~~w~~~f~~~~~~~~ 215 (494)
+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++......+ |..+++.+.+. .+|+..|++.+++.+
T Consensus 345 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 424 (451)
T 1pw4_A 345 NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 424 (451)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6778888889999999999898899999999999999999999999998 99999888766 489999999888887
Q ss_pred HHHHHhhcc
Q psy4871 216 IFTVTFMFM 224 (494)
Q Consensus 216 ~~~~~~~~~ 224 (494)
+..+..+++
T Consensus 425 ~~~~~~~~~ 433 (451)
T 1pw4_A 425 LAVILLIVV 433 (451)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665544
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=5.7e-12 Score=121.61 Aligned_cols=141 Identities=21% Similarity=0.277 Sum_probs=115.8
Q ss_pred CCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhhhhhhe
Q psy4871 88 PNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYL 167 (494)
Q Consensus 88 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~~~~~i 167 (494)
....+++.++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888889999999999999999999999999888888877777777888888888888888777777788999
Q ss_pred ecccCCCCchhHHHH-HHHHHHHHHHHHHHhhhh----hhhHHHHHHHHHHHHHHHHHh-hccCcch
Q psy4871 168 GEISETSIRGTIGTL-FQISCHLGILYTYVLGSE----LSYMNYLTYSLIIPIIFTVTF-MFMPESP 228 (494)
Q Consensus 168 ~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~----~~w~~~f~~~~~~~~~~~~~~-~~~~esp 228 (494)
.|.+|++.|+.+.++ ++.+..+|..++|.+++. .+++..|.+.++++++..+.. +..||.+
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 999999999999888 477777888888887765 478888888888877776554 4456543
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.23 E-value=3.3e-11 Score=119.02 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=116.2
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHH-----hhHHHHHHHHHHHHHHh---------hHHHHHHH
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLL-----MTGPITTASWIIAMYSR---------SVLGLYVM 148 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~a~---------~~~~l~~~ 148 (494)
.++.+..+.+++.+...++..++.++.|++.||+|||+... .+.++.+++.++..+.. +.+.+.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4aps_A 313 RVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGS 392 (491)
T ss_dssp SCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHH
T ss_pred HhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHH
Confidence 45666678899999999999999999999999999987665 77777777777766654 67778888
Q ss_pred HHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHHHHHHHHHHHHHHHhhc
Q psy4871 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL---SYMNYLTYSLIIPIIFTVTFMF 223 (494)
Q Consensus 149 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~ 223 (494)
-++.|++.+...+....++.|.+|+++|+.+.++......+|..+++.+.+.+ ++.+.|.+.++++++..+..++
T Consensus 393 ~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 393 WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998774 5667777777777666655533
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=9.7e-11 Score=113.78 Aligned_cols=139 Identities=11% Similarity=-0.023 Sum_probs=115.0
Q ss_pred CCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhHhhhhhhh
Q psy4871 83 PIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162 (494)
Q Consensus 83 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~~~~~l~~~r~l~G~~~g~~~~~ 162 (494)
.++.+..+.+++.+.+.++..++.++.|+++||+|||+++..+.++.+++.++..+.++.+.++.. ++.|++.+...+.
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~ 367 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPT 367 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHH
Confidence 668999999999999999999999999999999999999999999999999888888877665544 8889999999999
Q ss_pred hhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hh-hHHHHHHHHHHHHHHHHHhhcc
Q psy4871 163 SPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----LS-YMNYLTYSLIIPIIFTVTFMFM 224 (494)
Q Consensus 163 ~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----~~-w~~~f~~~~~~~~~~~~~~~~~ 224 (494)
..++..|.+|++ ++.+.++.. ...+|..++|.+.+. .+ ++..|++.++..++..+..+..
T Consensus 368 ~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 432 (438)
T 3o7q_A 368 IFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFR 432 (438)
T ss_dssp HHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999866 888888776 455788888877765 46 8888887766655554444443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=2e-10 Score=113.36 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=109.9
Q ss_pred hhHHHhhhcCCCCCCCCCCchhHHHHHHHHhHhhhhhchHhhhhhhCchhHHHhhHHHHHHHHHHHHHHh-----hHHHH
Q psy4871 71 APVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSR-----SVLGL 145 (494)
Q Consensus 71 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~a~-----~~~~l 145 (494)
....+.+.+ ..+.+............+...++.++.+++.||+|||+.++.+....+++.+..+... +...+
T Consensus 297 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 373 (491)
T 4gc0_A 297 LYYAPEVFK---TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 373 (491)
T ss_dssp HHHHHHHHH---HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcchHHHH---hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHH
Confidence 334455553 5566666677777788888999999999999999999999999988888877665432 12222
Q ss_pred HH-HHHHHHhHhhhhhhhhhhheecccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----------hhhHHHHHHHHHHH
Q psy4871 146 YV-MRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE----------LSYMNYLTYSLIIP 214 (494)
Q Consensus 146 ~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~----------~~w~~~f~~~~~~~ 214 (494)
+. .-+..+++ ....+....+.+|.+|.+.|+.+.++......+|.++++.+... .++.+.|++.++++
T Consensus 374 ~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~ 452 (491)
T 4gc0_A 374 LSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452 (491)
T ss_dssp HHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22 22222222 23346677899999999999999999988888888877655433 24556778888877
Q ss_pred HHHHHHh-hccCcch
Q psy4871 215 IIFTVTF-MFMPESP 228 (494)
Q Consensus 215 ~~~~~~~-~~~~esp 228 (494)
++..+.. +++||+.
T Consensus 453 ~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 453 VLAALFMWKFVPETK 467 (491)
T ss_dssp HHHHHHHHHHCCCCT
T ss_pred HHHHHHHHheecCCC
Confidence 7776554 7889984
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.81 E-value=9.9e-09 Score=97.32 Aligned_cols=133 Identities=15% Similarity=0.057 Sum_probs=105.6
Q ss_pred hHhHHHhHHHHHHhcCCCc-chhHHHHHHHHHHHHhhhhhhhhhcccCchhHHHHhhHHHHHHHHHHHHHHHhhhccccC
Q psy4871 302 VQSIIAYANTIFASSETFL-PSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYE 380 (494)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (494)
........|.+.++.|.+. +.+.......++..++.++.|++.||+|||+.+..+..+.+++.+++....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------- 86 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--------- 86 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc---------
Confidence 4445556677777777664 566778888899999999999999999999999999999888887776642
Q ss_pred CCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHHhhhchhh
Q psy4871 381 IPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~~~~i~~~i~~~l~~ 447 (494)
+.+..++..++.+.+.+. ..+...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 87 ---~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 87 ---SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred ---cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334445555566665554 345556889999999999999999999999999999999999876
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.78 E-value=4.7e-08 Score=97.17 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=103.0
Q ss_pred hHhHHHhHHHHHHh-cC------CCc-chhHHHHHHHHHHHHhhhhhhhhhccc-CchhHHHHhhHHHHHHHHHHHHHHH
Q psy4871 302 VQSIIAYANTIFAS-SE------TFL-PSDYISILFAIILLVSIFPSTYYIDRA-GRRVLFLVSSAGCSLFSFIAGLYYY 372 (494)
Q Consensus 302 ~~~~~~~~~~~~~~-~~------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (494)
.+....+.+.++.+ .+ .+. +.+.......++..++.++.|+++||+ |||+++..+.++.+++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 44555666666654 55 554 677888888999999999999999999 99999999988888887776653
Q ss_pred hhhccccCCCccchHhHHHHHHHHHHhhcccccchhhhhcccCCcchhhHHHHH---HHHHHHHHHHHHHHhhhchhh
Q psy4871 373 VTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAV---INILCTTLGLISYKLFFLMDK 447 (494)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~---~~~~~~~~~~i~~~i~~~l~~ 447 (494)
..+.+..++..++.+++.+. ..+...+++.|.+|++.|+++.+. .+....+|..++|.+.+.+.+
T Consensus 106 ---------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 ---------EHSVQGFYTGLFLIALGSGG-IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHT-THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred ---------cccHHHHHHHHHHHHHhccc-cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11445555566666666554 345556899999999999776666 889999999999999998876
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=57.04 E-value=4.3 Score=19.50 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=11.3
Q ss_pred chHhhhhhhCchhH
Q psy4871 108 PAGMLVNRIGRKWS 121 (494)
Q Consensus 108 ~~g~l~dr~Grr~~ 121 (494)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999864
Done!