RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4871
(494 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 150 bits (382), Expect = 2e-40
Identities = 99/390 (25%), Positives = 177/390 (45%), Gaps = 26/390 (6%)
Query: 58 IAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG 117
I AF T + F L + + + +S +V+I +G + + AG L +R G
Sbjct: 19 IGAFLTLIKFFKRFGALTSIGACAASTVLS----GLIVSIFSVGCLIGSLFAGKLGDRFG 74
Query: 118 RKWSLLMTGPITTASWIIAMYS--RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
RK SLL+ + ++ ++ +S L V R + G + I V+ PMY+ EI+ +
Sbjct: 75 RKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKL 134
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTY-------SLIIPIIFTVTFMFMPESP 228
RG +G+L+Q+ GIL ++G L+ + + I+ + +F+PESP
Sbjct: 135 RGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESP 194
Query: 229 YFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTN--FREFMGRSNMKA 286
+ +K + +A L LR V E+Q K + ++VE + E ++
Sbjct: 195 RWLVLKGKLEEARAVLAKLRG--VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQ 252
Query: 287 FVFMAF-LAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 345
+ M L +F+ TG+ +I Y+ TIF + S ++I+ ++ V F + + +D
Sbjct: 253 RLLMGVMLQIFQQLTGINAIFYYSPTIFETL-GLSDSLLVTIIVGVVNFVFTFIAIFLVD 311
Query: 346 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 405
R GRR L L+ +AG ++ + G V + + V + I L FF LG+GP
Sbjct: 312 RFGRRPLLLLGAAGMAICFLVLG----VALLGVAKSKGAGIVAIVFILLFIAFFALGWGP 367
Query: 406 LFTPLLSEYFSSNMKAVS---CAVINILCT 432
+ ++SE F ++ + N L
Sbjct: 368 VPWVIVSELFPLGVRPKAMAIATAANWLAN 397
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 116 bits (293), Expect = 4e-28
Identities = 97/385 (25%), Positives = 170/385 (44%), Gaps = 34/385 (8%)
Query: 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVM--- 148
VV+I +G ++ + AG L +R GRK SLL+ + I+ + L + ++
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 149 RTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTY-------VLGSEL 201
R L G + + PMYL EI+ ++RG + +L+Q++ GIL Y L + L
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 202 SYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKT--ADQVQSEL 259
+ L LI + + F+PESP + K + +A +SL LR + ++ EL
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDEL 253
Query: 260 Q--IIKQNTSKNVERTNFREF--MGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS 315
+ IK++ K + ++ R + L F+ FTG+ +I+ Y+ TIF
Sbjct: 254 ELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-E 312
Query: 316 SETFLPSD--YISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYV 373
+ +SI+ + F + + +DR GRR L L+ +AG ++ F+ G
Sbjct: 313 NAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG--ILG 370
Query: 374 TIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM--KAVSCAVI---- 427
+ + V + I L FF +G+GP+ ++SE F ++ K +S AV
Sbjct: 371 ASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWL 430
Query: 428 -NILCTTL------GLISYKLFFLM 445
N + L + +F
Sbjct: 431 ANFIVGFLFPTMLESIGVGGVFIFF 455
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 79.0 bits (195), Expect = 1e-15
Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 54/367 (14%)
Query: 94 VVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLY------- 146
VA IG + G NR GR+ SL + + S + + +
Sbjct: 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGY 119
Query: 147 -----VMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGIL------YTY 195
+ R + G + ++SPMY+ EI+ IRG + + Q + G L Y
Sbjct: 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFI 179
Query: 196 VLGSELSYMN-----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRN 249
+ S++N Y+ S IP ++F + F+PE+P + + ++ +A L+ +
Sbjct: 180 ARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMG 239
Query: 250 KTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAF-------LAVFRAFTGV 302
T LQ IK + + K +F L+VF+ F G+
Sbjct: 240 NT--LATQALQEIKHSLDHGRKTGG----------KLLMFGVGVIVIGVMLSVFQQFVGI 287
Query: 303 QSIIAYANTIFASSETFLPSDYI-SILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCS 361
++ YA IF + + +I+ +I L + +D+ GR+ L ++ + G +
Sbjct: 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 347
Query: 362 LFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNM-- 419
+ F G +Y V LS+ F + +GP+ LLSE F + +
Sbjct: 348 IGMFSLGTAFYTQAP--------GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG 399
Query: 420 KAVSCAV 426
KA++ AV
Sbjct: 400 KALAIAV 406
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 70.0 bits (172), Expect = 4e-13
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 3/169 (1%)
Query: 56 ACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNR 115
+ F +G+ +P L L +S ++ +V+ +G L + AG L +R
Sbjct: 4 LFLGFFLSGLDRGLLSPALPLLAEDLG---LSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 116 IGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ LL+ + ++ ++ S+ L V R L G A+Y + + E
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224
RG LF LG L +LG L+ + +I I + +
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169
Score = 47.3 bits (113), Expect = 9e-06
Identities = 33/169 (19%), Positives = 64/169 (37%), Gaps = 1/169 (0%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+A +SF + + L + + +S E ++++ +G L + G+L +R+
Sbjct: 179 LLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 117 GRKWSLLMTG-PITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
GR+ LL+ G + ++ + S+ L V L GF + + E++
Sbjct: 239 GRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEA 298
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224
RGT LF LG +L L +I + +
Sbjct: 299 RGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Score = 36.1 bits (84), Expect = 0.032
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 14/165 (8%)
Query: 288 VFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD--YISILFAIILLVSIFPSTYYID 345
+ + LA F G ++ Y ++ + LF + ++ D
Sbjct: 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD 236
Query: 346 RAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGP 405
R GRR L L+ + + S L LL F P
Sbjct: 237 RLGRRRLLLLIGLLLAALGLLLLAL------------APSLALLLVALLLLGFGLGFAFP 284
Query: 406 LFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIG 450
L SE + + + N + G + L L+ G
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Score = 32.7 bits (75), Expect = 0.46
Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 2/169 (1%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+ F G+ P L+++ P A +G L P+ G+L +
Sbjct: 91 LVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
Query: 117 GRKWSLLMTGPITTASWIIAMYS-RSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSI 175
G +W L+ + ++ ++ R +L L + L F + P+YL E+ S
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA 210
Query: 176 RGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFM 224
G L + GIL + G + L+I ++ + +
Sbjct: 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258
Score = 31.1 bits (71), Expect = 1.2
Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 25/182 (13%)
Query: 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYID 345
+F+ F + + S + I F++ + + Y D
Sbjct: 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAG--LIVSAFSLGYALGSLLAGYLSD 59
Query: 346 RAGRRVLFLVSSAGCSLFSFI--------------------AGLYYYVTIELQYEIPYTS 385
R GRR + L+ +L S + G Y L E
Sbjct: 60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119
Query: 386 WVPFLSISLLGVFFNLG--FGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFF 443
+ L F LG GPL LL+E + A++ +L L L +L
Sbjct: 120 ERGRA-LGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLL 178
Query: 444 LM 445
L+
Sbjct: 179 LL 180
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 66.3 bits (162), Expect = 8e-12
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 38/382 (9%)
Query: 57 CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
+AAF G+ + P L L+++ + +SP E ++ +G L+ AG L +R
Sbjct: 2 FLAAFLAGLGRSLLGPALPLYLAED--LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF 59
Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR 176
GR+ LL+ + ++ +++ S+ L V+R LQG A++ + + + R
Sbjct: 60 GRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEER 119
Query: 177 GTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQ 236
G L LG +LG L+ + + +I I + + +
Sbjct: 120 GRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL---AALLLPRPP 176
Query: 237 EGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVF 296
L + ++ +A L
Sbjct: 177 PESKRPKPAEEAPAPLVPAWKLL---------------------LRDPVLWLLLALLLFG 215
Query: 297 RAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVS 356
AF + + + + S + L ++ + DR GRR L++
Sbjct: 216 FAFFALLTYLPLYQEVLGLSALLAG--LLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLA 273
Query: 357 SAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFS 416
L + L +S +++ LLG L F L L+S+
Sbjct: 274 LLLLILAALGLALLSLTE---------SSLWLLVALLLLGFGAGLVFPALNA-LVSDLAP 323
Query: 417 SNMKAVSCAVINILCTTLGLIS 438
+ + + N + G +
Sbjct: 324 KEERGTASGLYNTAGSLGGALG 345
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 62.0 bits (151), Expect = 3e-10
Identities = 63/304 (20%), Positives = 128/304 (42%), Gaps = 27/304 (8%)
Query: 90 EGSWVVAIIE----IGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGL 145
E +W V + + +G L G L +R GRK LL++ +T S ++ +S +
Sbjct: 124 EDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF 183
Query: 146 YVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMN 205
V R L G + I+V + + E R +GTL Q+ LG VL ++Y
Sbjct: 184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG----LVLLPLVAYFI 239
Query: 206 ----YLTYSLIIP-IIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 260
+L ++ +P +F + F+PESP + + + +A++ L+ + ++ +E+
Sbjct: 240 PDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL 299
Query: 261 II--KQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSET 318
+ +++ S + ++ +F + N++ + F T +Y +
Sbjct: 300 SLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT--TAF----SYYGLVLDLGNL 353
Query: 319 FLPSDYIS-ILFAIILLVSIFPSTYYIDRAGRR---VLFLVSSAGCSLFS-FIAGLYYYV 373
+ Y+ + ++ L + + IDR GRR L+ + L F+ Y++
Sbjct: 354 GG-NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL 412
Query: 374 TIEL 377
L
Sbjct: 413 RTAL 416
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 43.8 bits (104), Expect = 3e-05
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 5/141 (3%)
Query: 92 SWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTL 151
++A +G + +G+L +R GRK LL+ I S + S ++ L + R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 152 QGFSMAAIYVISPMYLGEISETSIR----GTIGTLFQISCHLGILYTYVLGSELSY-MNY 206
QGF A V + +I R G + + LG VL L + +
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 207 LTYSLIIPIIFTVTFMFMPES 227
L +++ F + +PE+
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 45.8 bits (109), Expect = 3e-05
Identities = 55/299 (18%), Positives = 110/299 (36%), Gaps = 25/299 (8%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 141
+ P + ++ + IG + G L +RIGR+ WS+L+ T + +
Sbjct: 49 LDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC----ALATN 104
Query: 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTL----FQISCHLGILYTYVL 197
V L ++R L G + + + E + RGT L + I +G L
Sbjct: 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Query: 198 GSELSYMNYLTYSLIIPIIFT-VTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQ 256
+ + I P++ + F+PES + + + + + + + Q
Sbjct: 165 IPVFGWRSLFYVGGIAPLLLLLLLMRFLPES-IDFLVSKRPETVRRIVNAIAPQMQAEAQ 223
Query: 257 SEL--QIIKQNTSKNVERTNFREFMGRSNMKAFV--FMAFLAVFRAFTGVQSIIAYANTI 312
S L Q Q T ++V + F+ R + ++ FM + V+ + ++
Sbjct: 224 SALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFS 283
Query: 313 FASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYY 371
+ + T + I+ + DR G RV L+ G ++F+ + G
Sbjct: 284 LSLAATGGALFNFGGVIGSIIF------GWLADRLGPRVTALLLLLG-AVFAVLVGSTL 335
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 40.7 bits (95), Expect = 0.002
Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 77 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 136
L S E + + + + I+ +G + G L +++GRK LL+ + A
Sbjct: 190 LPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNG---FFA 246
Query: 137 MYSRSVLG---LYVMRTLQGFSMAAIYVISPMYLGEISETSIRG----------TIGTLF 183
+S V G R L GF + I Y E RG IG ++
Sbjct: 247 FFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY 306
Query: 184 QISCHLGIL----YTYVLGSELSYMNYLTYSLI--IPIIFTV-TFMFMPESPYFY 231
+ I+ +++ +GS + ++ + ++ P +F + FMPESP F+
Sbjct: 307 AAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF 361
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 34.9 bits (81), Expect = 0.076
Identities = 65/322 (20%), Positives = 117/322 (36%), Gaps = 52/322 (16%)
Query: 110 GMLVNRIGRKWSLLMT----GPITTASWIIAMYSR----SVLGLYVMRTLQGFSMAAIYV 161
G +RIGRK +L++T G T ++ Y+ + + L + R +QGFS+ +
Sbjct: 56 GHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG 115
Query: 162 ISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLI------IPI 215
+ +YL E + RG G+ Q+ +G+L + LSY+ L + IP
Sbjct: 116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL--LGDDALLEWGWRIPF 173
Query: 216 IFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNF 275
+ + + + L +LR + E K +R
Sbjct: 174 LVSAVLV------------------LIGL-YLRRNLEETPVFE----KAQEKHKKKRGPI 210
Query: 276 REFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSD--YISILFAIIL 333
E + K F+ L V T I Y T + + + +L I+
Sbjct: 211 AE-TLTKHRKPFLLGLGL-VIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILF 268
Query: 334 LVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSIS 393
++I S DR GRR + + +F+ +A L + + + + F +
Sbjct: 269 FITIPLSGALSDRIGRRPVLI-------IFTVLAALLAVPLLMALLDSG-SFTLFFFLVL 320
Query: 394 LLGVFFNLGFGPLFTPLLSEYF 415
+ + + GP L E F
Sbjct: 321 GMALIGGMYTGP-MGSFLPELF 341
Score = 29.9 bits (68), Expect = 2.9
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 85 PMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMY----SR 140
+S N V+ + I +++ +G L +RIGR+ L++ + + + S
Sbjct: 251 GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSG 310
Query: 141 SVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGT 178
S + + +L E+ T +R T
Sbjct: 311 SFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVRYT 348
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 33.3 bits (77), Expect = 0.27
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 110 GMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVI 162
G L +R GRK LL + + ++ S L V+R +Q + + VI
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVI 114
Score = 29.9 bits (68), Expect = 3.4
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 35/135 (25%)
Query: 33 PPQTYSRIMVSGTYTGR---FGSEAHACIAAFTTGMSFAW---SAPVLEELLSKESPIPM 86
T+ +++ S TY G F AC AAF FAW S +LE++
Sbjct: 192 DALTFKQLLKSKTYLGNVLIFA----ACSAAF-----FAWLTGSPFILEQM-------GY 235
Query: 87 SPNEGSWVVAIIEIGNYLSPIP--AGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLG 144
SP + IG LS +P LV G + +L G W++ +++ SV+
Sbjct: 236 SPAD---------IG--LSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIA 284
Query: 145 LYVMRTLQGFSMAAI 159
+++ L S+ +
Sbjct: 285 IWLASLLSHPSLVPL 299
>gnl|CDD|151504 pfam11058, Ral, Antirestriction protein Ral. Ral alleviates
restriction and enhances modification by the E.Coli
restriction and modification system.
Length = 66
Score = 30.1 bits (67), Expect = 0.31
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 15 CRRLGKFEGCKVRINSMIPPQTYSRIMVSGTYTGRFGSEAHACIA 59
C + K +GCK+ M+ P+ + +M G ++ A IA
Sbjct: 11 CGQFKKCKGCKLDAECMVKPEEMALVMEDGKIVDKWAIRTTAMIA 55
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 31.8 bits (72), Expect = 0.87
Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA-MYSRSVLG 144
+SP+ + +V IG + G L + +GR+ + + + I +V
Sbjct: 271 LSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAV 330
Query: 145 LYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYM 204
L + Q + I+ I P +LGE T R G+ +TY LG+ +
Sbjct: 331 LGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA-----------AGLGFTYQLGNLGGAL 379
Query: 205 N 205
Sbjct: 380 A 380
Score = 31.8 bits (72), Expect = 0.87
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 110 GMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGE 169
G+ +R GR+ ++ + + +A + ++ + +++ R + G M Y S Y+ E
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE 127
Query: 170 ISETSIRGTIGTLFQISCHLGILYTYVLGSELSYM-----NYLTYSLIIPIIFTVTFMF- 223
+R L +G + + S + + L + I+PIIF +
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKN 187
Query: 224 MPESPYF 230
+PE+ +
Sbjct: 188 IPEAEDW 194
>gnl|CDD|225613 COG3071, HemY, Uncharacterized enzyme of heme biosynthesis
[Coenzyme metabolism].
Length = 400
Score = 31.2 bits (71), Expect = 1.4
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 351 VLFLVSSAGCSLFSFIAGLYYYVTIEL---QYEIPYTSWVPFLSISLLGVFF 399
+LF++ AG + IAG YV I+ E+ T+ V FL I+L+ ++
Sbjct: 6 LLFVLLLAGIGVGLAIAGQQGYVLIQTDNYNIEMSLTTLVIFLIIALVVLYL 57
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 30.8 bits (70), Expect = 1.7
Identities = 61/366 (16%), Positives = 125/366 (34%), Gaps = 57/366 (15%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRK----WSLLMTGPITTASWIIAMYSRS 141
+S + +V + G + P G L++R G + +++ G T Y
Sbjct: 26 LSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAY--- 82
Query: 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSEL 201
+ LY++R L G + A + + + S R T ++F + LG ++G L
Sbjct: 83 -VSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGG----IIGGPL 137
Query: 202 SYMNYLTYSL-IIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQ 260
+ +S II V + + I + KA + + + +E Q
Sbjct: 138 VGWILIHFSWQWAFIIEGVLGIIWGVLWLKF-IPDPPQKAKWLTEEEKYIVVGGLLAEQQ 196
Query: 261 IIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFAS-SETF 319
+T K + + Q ++ F + T+
Sbjct: 197 GKGPSTPKK-----------YQIKELLKDRRVWGLA----LGQFLVNIGLGFFLTWFPTY 241
Query: 320 LPSDYIS------------ILFAIILLVSIFPSTYYIDRAGRRVLF--LVSSAGCSLFSF 365
L + + I ++ + + R G+ ++F + + S
Sbjct: 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSL 301
Query: 366 IAGLYYYVTIELQYEIPYTSWVPFLSISLLGV-FFNLGFGPLFTPLLSEYFSSNMKAVSC 424
+ YV I P+ +++L+ + FF LG G + L+S+ N+ ++
Sbjct: 302 LMFATNYVNI------------PYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTG 349
Query: 425 AVINIL 430
+IN L
Sbjct: 350 GLINSL 355
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 30.9 bits (70), Expect = 1.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 103 YLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIY 160
+L PI G V++ G + ++ G + W++ Y+ S+ LY + G A+Y
Sbjct: 53 WLVPI-EGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAAVVAGIGAGAVY 109
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 30.0 bits (66), Expect = 2.8
Identities = 38/307 (12%), Positives = 94/307 (30%), Gaps = 8/307 (2%)
Query: 77 LLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKWSLLMTGPITTASWIIA 136
LL + +++ +G + + AG L +R GR+ L++ + ++
Sbjct: 27 LLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLL 86
Query: 137 MY--SRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIR------GTIGTLFQISCH 188
+ + L ++R LQG + ++ L E + +
Sbjct: 87 ALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA 146
Query: 189 LGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLR 248
LG L +L L + + L + + + + A + + ++ +
Sbjct: 147 LGPLLAGLLLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGK 206
Query: 249 NKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAY 308
+ ++ + F + + F+ + ++
Sbjct: 207 LLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGA 266
Query: 309 ANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAG 368
A + A + +L LL ++ + +DR GR + +L I
Sbjct: 267 AGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILL 326
Query: 369 LYYYVTI 375
L + +
Sbjct: 327 LVLLLAL 333
>gnl|CDD|165125 PHA02758, PHA02758, hypothetical protein; Provisional.
Length = 321
Score = 30.0 bits (67), Expect = 2.9
Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 288 VFMAFLAVFRAFTGVQSIIAYANTIFA------------SSETFLPSDYISILFAIILLV 335
+F+ LA F A G Q II A I A S ++ L A +LL+
Sbjct: 63 MFLYLLAFFGAIGGTQFIIFAAVIIAAFALKEKPKLAAPSHAGLAEPLKLAALAAFVLLL 122
Query: 336 SIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLL 395
+ A ++ + V A + + G + ++ + +
Sbjct: 123 GLILPIILFYDAAKKFRYDVXGAIALKAAALLGAIGMGL--FMFGAALSASTDKVHLLSF 180
Query: 396 GVFFNLGFGPLFTPL 410
G FN F + PL
Sbjct: 181 GGVFNDAFAGILGPL 195
>gnl|CDD|234813 PRK00696, sucC, succinyl-CoA synthetase subunit beta; Provisional.
Length = 388
Score = 29.7 bits (68), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 4/22 (18%)
Query: 342 YY----IDRAGRRVLFLVSSAG 359
YY +DRA RRV+F+ S+ G
Sbjct: 108 YYLSIVLDRATRRVVFMASTEG 129
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 29.2 bits (66), Expect = 5.2
Identities = 54/341 (15%), Positives = 114/341 (33%), Gaps = 53/341 (15%)
Query: 86 MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIG-RKWS--LLMTGPITTASWIIAMYSRSV 142
+S + +VA+ + + I G LV++ G R + L+ I +A+ S SV
Sbjct: 34 LSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSV 93
Query: 143 LGLYVMRTLQGFSMA----AIYVISPMYLGEISET--SIRGTIGTLFQISCHL------- 189
L ++R G + + IS + +I T + G +
Sbjct: 94 --LLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151
Query: 190 GILYTYVLGSELS--YMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWL 247
+++ L + L+ + + + I+ + + F ++P +
Sbjct: 152 SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP----GKPATGKLSFKGAR 207
Query: 248 RNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIA 307
+ + +L++ + + + + + F +F GV SI A
Sbjct: 208 WSVGTGALGDQLKVFRDRHT------------------WILALLYSVTFGSFLGVSSIFA 249
Query: 308 -YANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFI 366
+ F S+ + + L ++ ++ DR G L+S G ++ +F+
Sbjct: 250 MFFKDQFGLSKV--TAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFL 307
Query: 367 AGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPLF 407
L + L V + L F G G F
Sbjct: 308 VVLGLVSPLSLA--------VFIVLFVALFFFSGAGNGSTF 340
>gnl|CDD|218922 pfam06168, DUF981, Protein of unknown function (DUF981). Family of
uncharacterized proteins found in bacteria and archaea.
Length = 189
Score = 28.4 bits (64), Expect = 5.6
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 292 FLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDRA-GRR 350
L + F G+ I Y I+ T P + L+ + L + P T +DR G++
Sbjct: 98 PLGILALFLGL-YTIYYGVAIYNYGLTREPLLALLGLYILTGLAGLLPPTLALDRLKGKK 156
Query: 351 VLFLVSSAGCSLFSFIAGLYYYVTI 375
+L ++ + L + +A +
Sbjct: 157 ILLILGAVILILAALLALFIGIEAV 181
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family
and similar proteins. The integral membrane proteins
from the MATE family are involved in exporting
metabolites across the cell membrane and are responsible
for multidrug resistance (MDR) in many bacteria and
animals. MATE has also been identified as a large
multigene family in plants, where the proteins are
linked to disease resistance. A number of family members
are involved in the synthesis of peptidoglycan
components in bacteria.
Length = 420
Score = 29.2 bits (66), Expect = 5.7
Identities = 21/177 (11%), Positives = 52/177 (29%), Gaps = 20/177 (11%)
Query: 287 FVFMAFLAVFRAFTGVQSIIAY---ANTIFASSETFLPSDYISILFAIILLVSIFPSTYY 343
+ + G ++I+ A + + S ++IL ++L + +
Sbjct: 39 LIALLIALGVGLSVGTSALISQAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPL 98
Query: 344 IDRAG--------RRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLL 395
I +L +F+ + + + + IS+L
Sbjct: 99 ILSLLGAEEEVIELAATYLTILILGLPITFLGAVLSGILQGEGD-----TRTAMI-ISVL 152
Query: 396 GVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISYKLFFLMDKHIGKT 452
N+ PL + + A+ ++ +G + ++ K I K
Sbjct: 153 SNLLNILLDPLL---IFGLGPPELGIAGAALATVISYVIGALLLLIYLRKGKKILKF 206
>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 28.8 bits (65), Expect = 6.7
Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 28/122 (22%)
Query: 286 AFVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVS--------- 336
VF L V A+ Y T S LPS + IL A ILL +
Sbjct: 154 VGVFFGPLIVLGAY--------YIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDI 205
Query: 337 ---IFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSIS 393
+ + R R L+ L I + P + L++
Sbjct: 206 RNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGL--------FPVWGLLFLLALP 257
Query: 394 LL 395
L
Sbjct: 258 LA 259
>gnl|CDD|216790 pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of
integral membrane proteins where the alignment appears
to contain two duplicated modules of three transmembrane
helices. The proteins are involved in the transport of
anions across the cytoplasmic membrane during taurine
metabolism as an exporter of sulfoacetate. This family
used to be known as DUF81.
Length = 236
Score = 28.7 bits (65), Expect = 6.9
Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 27/124 (21%)
Query: 318 TFLPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIEL 377
LP + +LF ++LL++ G L + G
Sbjct: 86 LLLPGAVLKLLFGVLLLLAALLMLLRKKLGAEASRRPPGPLGLLLAGGLVGFL------- 138
Query: 378 QYEIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAV--SCAVINILCTTLG 435
F +G G L P L +K + + ++ +
Sbjct: 139 ------------------SGLFGIGGGFLLVPALLYLLGLPLKKAVATSLAVFLVSSLAA 180
Query: 436 LISY 439
L+ Y
Sbjct: 181 LLGY 184
>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase. This model finds
proteins from prokaryotes and functionally equivalent
domains from larger, multifunctional proteins of fungi
and plants. Below the trusted cutoff of 180, but above
the noise cutoff of 20, are the putative shikimate
dehydrogenases of Thermotoga maritima and Mycobacterium
tuberculosis, and uncharacterized paralogs of shikimate
dehydrogenase from E. coli and H. influenzae. The
related enzyme quinate 5-dehydrogenase scores below the
noise cutoff. A neighbor-joining tree, constructed with
quinate 5-dehydrogenases as the outgroup, shows the
Clamydial homolog as clustering among the shikimate
dehydrogenases, although the sequence is unusual in the
degree of sequence divergence and the presence of an
additional N-terminal domain [Amino acid biosynthesis,
Aromatic amino acid family].
Length = 270
Score = 28.5 bits (64), Expect = 7.0
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 397 VFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINIL--CTTLGLISYKLFFLMDKHIGKTFN 454
+ ++L + PL TP L+E K++ I+ L +S++L+ ++ I K F
Sbjct: 209 LVYDLVYNPLETPFLAE-----AKSLGTKTIDGLGMLVYQAALSFELWTGVEPDIEKMFE 263
Query: 455 EIQ 457
++
Sbjct: 264 QLI 266
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.0 bits (65), Expect = 7.0
Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 109 AGMLVNRIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLG 168
A +++NRIG K +LL+ G I + + + ++ + L + +++ L F + + V Y+
Sbjct: 279 APLIINRIGAKNALLIAGTIMSVRILGSSFATTALEVVILKMLHMFEVPFLLVGCFKYIT 338
Query: 169 EISETSIRGTIGTL-FQISCHLGILYTYVL-GSELSYMNYLTYSLIIPII---FTVTFMF 223
+ + TI + FQ S L ++ L G + + L++ I FT+ +F
Sbjct: 339 SQFDVRLSATIYLIGFQFSKQLAMILLSTLAGIMYDSIGFQGAYLVLGGIVLSFTLISVF 398
Query: 224 MPESP 228
Sbjct: 399 TLSGS 403
>gnl|CDD|223123 COG0045, SucC, Succinyl-CoA synthetase, beta subunit [Energy
production and conversion].
Length = 387
Score = 28.7 bits (65), Expect = 8.2
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 342 YY----IDRAGRRVLFLVSSAG 359
YY +DR+ RR + + S+ G
Sbjct: 106 YYLSIVLDRSSRRPVLMASTEG 127
>gnl|CDD|226482 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 28.7 bits (64), Expect = 8.3
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 303 QSIIAYANTIFASSETFLPSDYISIL-FAIILLVSIFPSTYYIDRAGRRVLFL-VSSAGC 360
Q IA N F +P L F +++V PS R L++ V+ A
Sbjct: 681 QRTIAKENQRFHHGSDVIPVYDAKGLEFDHVIVVD--PSIVEETEQDLRDLYVAVTRALH 738
Query: 361 SLFSFIAG 368
SL+ F G
Sbjct: 739 SLYIFGEG 746
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 28.4 bits (64), Expect = 9.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 109 AGMLVNRIGRKWSLLMTGPI-TTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVIS 163
AG + +R GRK + + AS + ++ S L R LQG YV++
Sbjct: 58 AGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL-FLAGRFLQGIGAGCCYVVA 112
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.138 0.411
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,372,891
Number of extensions: 2537918
Number of successful extensions: 3877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3785
Number of HSP's successfully gapped: 254
Length of query: 494
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 393
Effective length of database: 6,457,848
Effective search space: 2537934264
Effective search space used: 2537934264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)