RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4871
         (494 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 56.2 bits (134), Expect = 5e-09
 Identities = 34/364 (9%), Positives = 92/364 (25%), Gaps = 25/364 (6%)

Query: 86  MSPNEGSWVVAIIEIGNYLSPIPAGMLVNRIGRKW----SLLMTGPITTASWIIAMYSRS 141
            S  +  + ++ I I    S    G + +R   +      L++   +      +   + S
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 142 VLGLYVMRTLQGFSMAAIYVISPMYLGEISETSIRGTIGTLFQISCHLGILYTYVLGSE- 200
           +  ++V+  L G+     +      +        RG I +++  + ++G     +L    
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 201 -LSYMNYLTYSLIIPIIFTVTFMFMPESPYFYAIKNQEGKAIESLKWLRNKTADQVQSEL 259
              + ++     +      +  +F                  E      +   ++ + EL
Sbjct: 176 MAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQEL 235

Query: 260 QIIKQNTSKNVERTNFREFMGRSNMKAFVFMAFLAVFRAFTGVQSIIAYANTIFASSETF 319
              +      +           +     +    L     +       A            
Sbjct: 236 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK--------- 286

Query: 320 LPSDYISILFAIILLVSIFPSTYYIDRAGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQY 379
             S +   L+    +       +  D+  R           +L +    +Y+        
Sbjct: 287 --SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM------- 337

Query: 380 EIPYTSWVPFLSISLLGVFFNLGFGPLFTPLLSEYFSSNMKAVSCAVINILCTTLGLISY 439
             P  +    +   ++  F   G   L      E         +     +     G ++ 
Sbjct: 338 -NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396

Query: 440 KLFF 443
               
Sbjct: 397 SAIV 400


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 40/391 (10%), Positives = 101/391 (25%), Gaps = 15/391 (3%)

Query: 57  CIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVNRI 116
            +  F          P     L       +S ++   + A I + + L     G+L +++
Sbjct: 13  GLFFFFYFFIMGAYFPFFPIWLHDI--NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL 70

Query: 117 GRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGF----------SMAAIYVISPMY 166
           G +  LL         +           L     +             +  A  V + + 
Sbjct: 71  GLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIE 130

Query: 167 LGEISETSIRGTIGTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPE 226
                     G       +   LG     ++ +  +   +   S    I+  + F    +
Sbjct: 131 KVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTD 190

Query: 227 SPYFYAIKNQEGKAIESLKWLRNKTADQVQSELQIIKQNTSKNVERTNFREFMGRSNMKA 286
           +P    + N  G    +          +      +       +     F +         
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250

Query: 287 FVFMAFLAVFRAFTGVQSIIAYANTIFASSETFLPSDYISILFAIILLVSIFPSTYYIDR 346
           F           +      +  A+ +F +          + L     ++S+         
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310

Query: 347 AGRRVLFLVSSAGCSLFSFIAGLYYYVTIELQYEIPYTSWVPFLSISLLGVFFNLGFGPL 406
           +   V+ L +     +   + G + Y+T + +     T    +L          + F  +
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI---YLVCFCFFKQLAMIFMSV 367

Query: 407 FTPLLSEYFSSNMKAVSCAVINILCTTLGLI 437
               + E        +   ++ +  T + + 
Sbjct: 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVF 398



 Score = 27.8 bits (60), Expect = 3.5
 Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 5/179 (2%)

Query: 55  HACIAAFTTGMSFAWSAPVLEELLSKESPIPMSPNEGSWVVAIIEIGNYLSPIPAGMLVN 114
            +      +     +         S  +          +V  + E+ N      A +++N
Sbjct: 225 LSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284

Query: 115 RIGRKWSLLMTGPITTASWIIAMYSRSVLGLYVMRTLQGFSMAAIYVISPMYLGEISETS 174
           RIG K +LL+ G I +   I + ++ S L + +++TL  F +  + V    Y+    E  
Sbjct: 285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR 344

Query: 175 IRGTI-----GTLFQISCHLGILYTYVLGSELSYMNYLTYSLIIPIIFTVTFMFMPESP 228
              TI         Q++     +    +   + +        ++ + FT+  +F    P
Sbjct: 345 FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,797,177
Number of extensions: 82973
Number of successful extensions: 214
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 5
Length of query: 494
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,185,626
Effective search space: 480178530
Effective search space used: 480178530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.3 bits)