Query psy4875
Match_columns 100
No_of_seqs 113 out of 310
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:02:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4875.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4875hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 97.9 5.7E-06 1.9E-10 52.9 2.4 75 5-79 48-122 (128)
2 1k78_A Paired box protein PAX5 97.9 1.7E-05 5.8E-10 53.1 4.6 75 5-79 63-137 (149)
3 2k27_A Paired box protein PAX- 97.8 9.9E-06 3.4E-10 55.0 2.2 75 5-79 56-130 (159)
4 1ic8_A Hepatocyte nuclear fact 93.6 0.0041 1.4E-07 44.8 -2.5 46 35-80 14-63 (194)
5 1u78_A TC3 transposase, transp 92.3 0.13 4.3E-06 33.0 3.5 51 5-60 37-87 (141)
6 2pjp_A Selenocysteine-specific 91.3 0.051 1.7E-06 35.4 0.6 54 7-60 37-90 (121)
7 3hot_A Transposable element ma 81.2 2.3 7.9E-05 30.9 4.8 50 6-60 45-96 (345)
8 2h8r_A Hepatocyte nuclear fact 76.6 0.16 5.3E-06 37.3 -2.8 46 35-80 15-64 (221)
9 1ic8_A Hepatocyte nuclear fact 70.6 0.83 2.8E-05 32.6 -0.1 31 65-95 16-46 (194)
10 1b4a_A Arginine repressor; hel 55.6 2.8 9.5E-05 28.5 0.3 42 38-84 7-48 (149)
11 2zko_A NS1, NS1A, non-structur 49.0 12 0.0004 22.6 2.3 17 79-95 16-32 (73)
12 2h8r_A Hepatocyte nuclear fact 43.1 11 0.00036 27.5 1.7 24 72-95 24-47 (221)
13 3bej_E Nuclear receptor coacti 34.2 18 0.00062 17.7 1.2 12 9-20 13-24 (26)
14 2b6n_A Proteinase K; S binding 30.5 12 0.00042 26.9 0.3 50 34-83 227-276 (278)
15 4dzt_A Aqualysin-1, aqualysin- 25.9 28 0.00095 24.8 1.6 49 34-82 225-273 (276)
16 1qgp_A Protein (double strande 21.6 37 0.0013 20.0 1.3 28 31-58 9-39 (77)
17 3eu6_A NS1, nonstructural prot 21.0 50 0.0017 23.5 2.0 17 79-95 13-29 (215)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=97.88 E-value=5.7e-06 Score=52.92 Aligned_cols=75 Identities=49% Similarity=0.926 Sum_probs=58.2
Q ss_pred cchHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcch
Q psy4875 5 TLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSI 79 (100)
Q Consensus 5 gcvskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~r 79 (100)
.-|++.+.+|.++|...|...+|.+|...+++....|+.+..++|...+++|..+|.+.|+......++.+++.+
T Consensus 48 ~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r 122 (128)
T 1pdn_C 48 GCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISR 122 (128)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHH
Confidence 358899999999999988887776788888888899999999999999999999987767632111235455444
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=97.86 E-value=1.7e-05 Score=53.10 Aligned_cols=75 Identities=57% Similarity=0.992 Sum_probs=59.4
Q ss_pred cchHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcch
Q psy4875 5 TLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSI 79 (100)
Q Consensus 5 gcvskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~r 79 (100)
..|++.+.+|.++|.+.|...+|.+|...+++....|..+..++|...+++|..+|.+.++|.....+|.+++.+
T Consensus 63 ~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r 137 (149)
T 1k78_A 63 GCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINR 137 (149)
T ss_dssp HHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHH
Confidence 458899999999999988887886677888999999999999999999999999987776544222335555544
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=97.76 E-value=9.9e-06 Score=55.01 Aligned_cols=75 Identities=60% Similarity=1.031 Sum_probs=59.9
Q ss_pred cchHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcch
Q psy4875 5 TLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSI 79 (100)
Q Consensus 5 gcvskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~r 79 (100)
.-|++.+.+|.++|...|...+|.+|...+++....|+++..++|...+++|..+|.+.+++.....++.+++.+
T Consensus 56 ~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r 130 (159)
T 2k27_A 56 GCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINR 130 (159)
T ss_dssp HHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHH
Confidence 358899999999999988887786677778888899999999999999999999998777654333345555554
No 4
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=93.62 E-value=0.0041 Score=44.76 Aligned_cols=46 Identities=15% Similarity=0.035 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhCCCcchhhhhccccccccccc----cCCCCCCCcchh
Q psy4875 35 AEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSN----DNIPSRECPSIF 80 (100)
Q Consensus 35 ~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~----~~~ps~ss~~rF 80 (100)
++++.+|.+|++++|.+++|+|++.+...|+... ..-++.++++++
T Consensus 14 ~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~ 63 (194)
T 1ic8_A 14 AHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQH 63 (194)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHH
Confidence 5799999999999999999999999988887532 333566666654
No 5
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.34 E-value=0.13 Score=32.97 Aligned_cols=51 Identities=10% Similarity=0.093 Sum_probs=39.0
Q ss_pred cchHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccc
Q psy4875 5 TLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRL 60 (100)
Q Consensus 5 gcvskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL 60 (100)
..|.+.+.+|.++|...+ .| +|...++.....|+.. .++|...+.+|..+|
T Consensus 37 ~Tv~r~~~~~~~~g~~~~---~g-r~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l 87 (141)
T 1u78_A 37 HCIRVYLKDPVSYGTSKR---AP-RRKALSVRDERNVIRA-ASNSCKTARDIRNEL 87 (141)
T ss_dssp HHHHHHHHSGGGTTCCCC---CC-CCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT
T ss_pred HHHHHHHHcccccCCcCC---CC-CCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH
Confidence 357889999998886644 33 5666788888888887 677888888888776
No 6
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=91.29 E-value=0.051 Score=35.40 Aligned_cols=54 Identities=22% Similarity=0.234 Sum_probs=47.5
Q ss_pred hHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccc
Q psy4875 7 LCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRL 60 (100)
Q Consensus 7 vskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL 60 (100)
+.++|..+.++|.+.|-..+..-........+..|.++..+++.|++.|.|+.+
T Consensus 37 ~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 37 MRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp HHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 346889999999999988887766677788999999999999999999999987
No 7
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=81.24 E-value=2.3 Score=30.94 Aligned_cols=50 Identities=12% Similarity=0.190 Sum_probs=36.0
Q ss_pred chHHHhhhHhhcc--cccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccc
Q psy4875 6 LLCPLVHRYYETG--SIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRL 60 (100)
Q Consensus 6 cvskiL~r~~etG--si~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL 60 (100)
-|.+.+.+|.+ | ++.+...+| +|+..+++ .|.+...++|.....+|...|
T Consensus 45 tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~~---~i~~~v~~~~~~t~~~ia~~l 96 (345)
T 3hot_A 45 TCERWFQRFKS-GDFDVDDKEHGK-PPKRYEDA---ELQALLDEDDAQTQKQLAEQL 96 (345)
T ss_dssp HHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCHH---HHHHHHHHCSCCCHHHHHHHT
T ss_pred HHHHHHHHHhC-CCccccCCCCCC-CCCcccHH---HHHHHHHhCccchHHHHHHHH
Confidence 46788999987 6 477888888 77777664 344445788988888886554
No 8
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=76.63 E-value=0.16 Score=37.34 Aligned_cols=46 Identities=17% Similarity=0.028 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhCCCcchhhhhccccccccccc----cCCCCCCCcchh
Q psy4875 35 AEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSN----DNIPSRECPSIF 80 (100)
Q Consensus 35 ~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~----~~~ps~ss~~rF 80 (100)
+++...|..+.+++|.+++|+||+.+...|+..+ ..-+++++++++
T Consensus 15 ~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~ 64 (221)
T 2h8r_A 15 AEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQH 64 (221)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHH
Confidence 5678888889999999999999999988887533 334566666665
No 9
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=70.58 E-value=0.83 Score=32.56 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=25.7
Q ss_pred cccccCCCCCCCcchhHHHHHHHHhhcCCCC
Q psy4875 65 VCSNDNIPSRECPSIFAWEIRDRLLQEGVCS 95 (100)
Q Consensus 65 vc~~~~~ps~ss~~rFaweir~~l~~~g~c~ 95 (100)
|.+++..+..++++.|+|+|++.+.+.|++.
T Consensus 16 ~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ 46 (194)
T 1ic8_A 16 QKAVVETLLQEDPWRVAKMVKSYLQQHNIPQ 46 (194)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHcCCCH
Confidence 4455666677999999999999999999874
No 10
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=55.61 E-value=2.8 Score=28.55 Aligned_cols=42 Identities=21% Similarity=0.032 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchhHHHH
Q psy4875 38 VSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIFAWEI 84 (100)
Q Consensus 38 vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rFawei 84 (100)
..+|++.-++++..+..||.+.|.+.|+-. +.+.++|...|+
T Consensus 7 ~~~I~~li~~~~~~tq~eL~~~L~~~G~~V-----tqaTisRDL~eL 48 (149)
T 1b4a_A 7 HIKIREIIMSNDIETQDELVDRLREAGFNV-----TQATVSRDIKEM 48 (149)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-----CHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHcCCCc-----CHHHHHHHHHHc
Confidence 467888888999999999999999999865 667777755553
No 11
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=48.97 E-value=12 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.687 Sum_probs=11.4
Q ss_pred hhHHHHHHHHhhcCCCC
Q psy4875 79 IFAWEIRDRLLQEGVCS 95 (100)
Q Consensus 79 rFaweir~~l~~~g~c~ 95 (100)
-|.|-+|.++...+.||
T Consensus 16 cflWHvrkrfadq~lgD 32 (73)
T 2zko_A 16 CFLWHVRKRVADQELGD 32 (73)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred ehhHHHHHHhhhccccc
Confidence 46677777777666665
No 12
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=43.06 E-value=11 Score=27.52 Aligned_cols=24 Identities=21% Similarity=0.031 Sum_probs=20.5
Q ss_pred CCCCCcchhHHHHHHHHhhcCCCC
Q psy4875 72 PSRECPSIFAWEIRDRLLQEGVCS 95 (100)
Q Consensus 72 ps~ss~~rFaweir~~l~~~g~c~ 95 (100)
+..+++++|+|+|++++...|++.
T Consensus 24 l~~~~~~~~~~~Ik~~r~~~gltQ 47 (221)
T 2h8r_A 24 MLSEDPWRAAKMIKGYMQQHNIPQ 47 (221)
T ss_dssp HTTSCHHHHHHHHHHHHHHHTCCH
T ss_pred HHhcCcHHHHHHHHHHHHHcCCCH
Confidence 345788999999999999999874
No 13
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=34.17 E-value=18 Score=17.67 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=10.4
Q ss_pred HHhhhHhhcccc
Q psy4875 9 PLVHRYYETGSI 20 (100)
Q Consensus 9 kiL~r~~etGsi 20 (100)
|||-|...+||+
T Consensus 13 kILHrLLQ~~sP 24 (26)
T 3bej_E 13 KILHRLLQEGSP 24 (26)
T ss_pred HHHHHHHHcCCC
Confidence 899999999865
No 14
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}
Probab=30.49 E-value=12 Score=26.88 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchhHHH
Q psy4875 34 TAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIFAWE 83 (100)
Q Consensus 34 s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rFawe 83 (100)
+|-+.-.+.-.++.+|.+.+.+||..|..-..-.....+...+++.++|.
T Consensus 227 aP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~d~~~gt~n~l~~~ 276 (278)
T 2b6n_A 227 SPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKVTDAKTGSPNKLLFS 276 (278)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCBTCCTTCCCEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCcCCCCCCCHhhHhhc
Confidence 34443333344557899999999998876543333333445677766553
No 15
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}
Probab=25.91 E-value=28 Score=24.76 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchhHH
Q psy4875 34 TAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIFAW 82 (100)
Q Consensus 34 s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rFaw 82 (100)
+|-+.-.+.-..+.+|.+.+.+||..|..-..-....-+...+++.++|
T Consensus 225 aP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~pn~l~~ 273 (276)
T 4dzt_A 225 TPHVAGVAALYLEQNPSATPASVASAILNGATTGRLSGIGSGSPNRLLY 273 (276)
T ss_dssp HHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCBSCCTTCCCEECC
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccCCCCCCCHhHhhh
Confidence 4544444444566789999999999887655444444455566666544
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.55 E-value=37 Score=19.96 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=22.8
Q ss_pred CcCcHHHHHHHHHHHhhCC---Ccchhhhhc
Q psy4875 31 RVATAEVVSKISHYKRECP---SIFAWEIRD 58 (100)
Q Consensus 31 ~~~s~~~vskIl~~~~e~p---sif~~eIR~ 58 (100)
...+++...+|+.+.++++ .+.+.||-.
T Consensus 9 ~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~ 39 (77)
T 1qgp_A 9 LSIYQDQEQRILKFLEELGEGKATTAHDLSG 39 (77)
T ss_dssp THHHHHHHHHHHHHHHHHCSSSCEEHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCCCcCHHHHHH
Confidence 4456778899999999999 899998843
No 17
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=21.01 E-value=50 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.691 Sum_probs=10.7
Q ss_pred hhHHHHHHHHhhcCCCC
Q psy4875 79 IFAWEIRDRLLQEGVCS 95 (100)
Q Consensus 79 rFaweir~~l~~~g~c~ 95 (100)
-|.|-||.++...+.||
T Consensus 13 CfLWHiRkrfad~~lgD 29 (215)
T 3eu6_A 13 CFLWHVRKRFADQELGD 29 (215)
T ss_dssp HHHHHHHHHHHHHSCCC
T ss_pred hhhHHHHHHHhhccccc
Confidence 46666666666666665
Done!