Query psy4875
Match_columns 100
No_of_seqs 113 out of 310
Neff 6.0
Searched_HMMs 13730
Date Fri Aug 16 20:02:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4875.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4875hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k78a2 a.4.1.5 (A:82-142) Pax 99.9 5.7E-27 4.1E-31 141.1 3.0 58 24-81 1-58 (61)
2 d6paxa2 a.4.1.5 (A:69-133) Pax 99.9 4E-26 2.9E-30 138.7 3.8 61 26-89 1-61 (65)
3 d1pdnc_ a.4.1.5 (C:) Paired pr 99.8 1.2E-20 9E-25 126.7 1.9 78 3-80 45-122 (123)
4 d1k78a2 a.4.1.5 (A:82-142) Pax 99.6 5.8E-18 4.2E-22 101.4 -1.3 44 57-100 6-49 (61)
5 d6paxa2 a.4.1.5 (A:69-133) Pax 99.6 1.7E-17 1.2E-21 100.4 -1.2 44 57-100 4-47 (65)
6 d1pdnc_ a.4.1.5 (C:) Paired pr 99.1 1.2E-11 9E-16 82.1 1.7 92 9-100 5-114 (123)
7 d1k78a1 a.4.1.5 (A:19-81) Pax- 98.1 5.2E-07 3.8E-11 53.5 1.4 21 3-23 43-63 (63)
8 d1k78a1 a.4.1.5 (A:19-81) Pax- 96.6 0.00017 1.3E-08 42.2 0.3 46 9-54 3-63 (63)
9 d1aila_ a.16.1.1 (A:) N-termin 46.2 6.5 0.00047 22.1 2.3 17 79-95 13-29 (70)
10 d2o8ra1 a.7.15.1 (A:4-112) Pol 42.9 2.3 0.00017 25.5 -0.1 64 1-64 34-109 (109)
11 d1o6ba_ c.26.1.3 (A:) Phosphop 36.3 23 0.0017 20.7 4.1 20 31-50 143-162 (163)
12 d1i5za1 a.4.5.4 (A:138-206) Ca 27.3 12 0.00086 20.0 1.3 15 7-21 46-60 (69)
13 d1ek6a_ c.2.1.2 (A:) Uridine d 22.8 31 0.0022 22.8 3.1 26 27-52 319-344 (346)
14 d2ecca1 a.4.1.1 (A:1-76) Homeo 21.5 41 0.003 18.3 3.0 58 27-92 4-62 (76)
No 1
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=5.7e-27 Score=141.06 Aligned_cols=58 Identities=59% Similarity=0.994 Sum_probs=55.8
Q ss_pred ccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchhH
Q psy4875 24 AIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIFA 81 (100)
Q Consensus 24 ~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rFa 81 (100)
.||||||+++||+++.+|.+|++|||+||+||||++|+++|+|++.++||+||+||..
T Consensus 1 vIGGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~nvPSvSsInRil 58 (61)
T d1k78a2 1 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRII 58 (61)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCCCCCchHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999999843
No 2
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=4e-26 Score=138.74 Aligned_cols=61 Identities=70% Similarity=1.123 Sum_probs=57.1
Q ss_pred CCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchhHHHHHHHHh
Q psy4875 26 GGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIFAWEIRDRLL 89 (100)
Q Consensus 26 GGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rFaweir~~l~ 89 (100)
|||||+++||+++.+|.+|++++|+||+||||++|+.+|||++.++||+||+|| .+|.+..
T Consensus 1 GGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~~vPSvSsInR---ilR~~~~ 61 (65)
T d6paxa2 1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINR---VLRNLAS 61 (65)
T ss_dssp SCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTCCCHHHHHH---HHHHHHH
T ss_pred CCCCcCcCCHHHHHHHHHHHHhCCccchHHHHHHHHHcCCCCCCCCCchHHHHH---HHHHhhh
Confidence 899999999999999999999999999999999999999999999999999998 5555543
No 3
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.78 E-value=1.2e-20 Score=126.67 Aligned_cols=78 Identities=47% Similarity=0.879 Sum_probs=75.7
Q ss_pred cccchHHHhhhHhhcccccccccCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccccccccCCCCCCCcchh
Q psy4875 3 FLTLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPSRECPSIF 80 (100)
Q Consensus 3 ~~gcvskiL~r~~etGsi~Pg~iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~gvc~~~~~ps~ss~~rF 80 (100)
-++||+||+.||.+||++.|++.||.+|+..+++++..|..+..++|++++|||+++|+.+|+|...++||+|+|+|+
T Consensus 45 S~~tV~k~l~r~~~~G~~~~~~~~~~rpr~~t~~~~~~I~~~~~~~P~~t~~El~~~L~~egv~~~~~~pSvStI~Ri 122 (123)
T d1pdnc_ 45 SHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRL 122 (123)
T ss_dssp CHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCcCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHHHcCCCCCCCCCChhhHhhc
Confidence 378999999999999999999999999999999999999999999999999999999999999999999999999986
No 4
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=5.8e-18 Score=101.36 Aligned_cols=44 Identities=43% Similarity=0.798 Sum_probs=43.2
Q ss_pred hccccccccccccCCCCCCCcchhHHHHHHHHhhcCCCCCCCCC
Q psy4875 57 RDRLLQEGVCSNDNIPSRECPSIFAWEIRDRLLQEGVCSNDNIP 100 (100)
Q Consensus 57 R~rL~~~gvc~~~~~ps~ss~~rFaweir~~l~~~g~c~~~~~p 100 (100)
++|++++.|+.++..|+.++|++||||||++|+++|+|+++|+|
T Consensus 6 KPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~nvP 49 (61)
T d1k78a2 6 KPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVP 49 (61)
T ss_dssp CCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSC
T ss_pred CCCcCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCCCCC
Confidence 79999999999999999999999999999999999999999998
No 5
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.60 E-value=1.7e-17 Score=100.38 Aligned_cols=44 Identities=61% Similarity=1.043 Sum_probs=43.0
Q ss_pred hccccccccccccCCCCCCCcchhHHHHHHHHhhcCCCCCCCCC
Q psy4875 57 RDRLLQEGVCSNDNIPSRECPSIFAWEIRDRLLQEGVCSNDNIP 100 (100)
Q Consensus 57 R~rL~~~gvc~~~~~ps~ss~~rFaweir~~l~~~g~c~~~~~p 100 (100)
++|++++.|+.++..|+.++|++||||||++|+++|+|+++|||
T Consensus 4 KPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~~vP 47 (65)
T d6paxa2 4 KPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIP 47 (65)
T ss_dssp CCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTCC
T ss_pred CcCcCCHHHHHHHHHHHHhCCccchHHHHHHHHHcCCCCCCCCC
Confidence 78999999999999999999999999999999999999999998
No 6
>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.08 E-value=1.2e-11 Score=82.05 Aligned_cols=92 Identities=29% Similarity=0.473 Sum_probs=79.3
Q ss_pred HHhhhHhhccccccc---------ccCCCCCC------cCcHHHHHHHHHHHhhCCCcchhhh---hccccccccccccC
Q psy4875 9 PLVHRYYETGSIRPR---------AIGGSKPR------VATAEVVSKISHYKRECPSIFAWEI---RDRLLQEGVCSNDN 70 (100)
Q Consensus 9 kiL~r~~etGsi~Pg---------~iGGskP~------~~s~~~vskIl~~~~e~psif~~eI---R~rL~~~gvc~~~~ 70 (100)
++|++-|.+|.+.|. .-.|..++ .+++.+|.+|+.+|++++++.+... +++.+++.+...+.
T Consensus 5 n~~gg~~~~GrpLs~dlR~rIv~~~~~G~s~r~iA~~~~VS~~tV~k~l~r~~~~G~~~~~~~~~~rpr~~t~~~~~~I~ 84 (123)
T d1pdnc_ 5 NQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIE 84 (123)
T ss_dssp CTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHH
T ss_pred ccCCCcccCCcCCCHHHHHHHHHHHHhcCCHHHHHHHHCcCHHHHHHHHHHHHccCCcCcCCCCCCCCCCCCHHHHHHHH
Confidence 468888999999884 35677665 3589999999999999999998876 56778888888777
Q ss_pred CCCCCCcchhHHHHHHHHhhcCCCCCCCCC
Q psy4875 71 IPSRECPSIFAWEIRDRLLQEGVCSNDNIP 100 (100)
Q Consensus 71 ~ps~ss~~rFaweir~~l~~~g~c~~~~~p 100 (100)
....++|..++|||+++|..+|+|+.+++|
T Consensus 85 ~~~~~~P~~t~~El~~~L~~egv~~~~~~p 114 (123)
T d1pdnc_ 85 EYKRSSPGMFSWEIREKLIREGVCDRSTAP 114 (123)
T ss_dssp HTTTTCTTCCHHHHHHHHHHTSSSCSTTCC
T ss_pred HHHHhCCCccHHHHHHHHHHcCCCCCCCCC
Confidence 788899999999999999999999999887
No 7
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.05 E-value=5.2e-07 Score=53.49 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=19.8
Q ss_pred cccchHHHhhhHhhccccccc
Q psy4875 3 FLTLLCPLVHRYYETGSIRPR 23 (100)
Q Consensus 3 ~~gcvskiL~r~~etGsi~Pg 23 (100)
-|+||+|++.||+|||+++||
T Consensus 43 S~s~v~k~l~r~reTG~i~PG 63 (63)
T d1k78a1 43 SHGCVSKILGRYYETGSIKPG 63 (63)
T ss_dssp CHHHHHHHHHHHHHHSCCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCC
Confidence 479999999999999999997
No 8
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.62 E-value=0.00017 Score=42.21 Aligned_cols=46 Identities=26% Similarity=0.166 Sum_probs=37.5
Q ss_pred HHhhhHhhccccccc---------ccCCCCCCc------CcHHHHHHHHHHHhhCCCcchh
Q psy4875 9 PLVHRYYETGSIRPR---------AIGGSKPRV------ATAEVVSKISHYKRECPSIFAW 54 (100)
Q Consensus 9 kiL~r~~etGsi~Pg---------~iGGskP~~------~s~~~vskIl~~~~e~psif~~ 54 (100)
++|++-|-+|.+.|. ...|.+++. +|+.+|+|++++|+||++|.|+
T Consensus 3 n~~gg~~~~GrPls~DLR~Riv~~~~~G~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~PG 63 (63)
T d1k78a1 3 NQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 63 (63)
T ss_dssp CTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCC
T ss_pred CCCCccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCC
Confidence 467888888988885 247777763 5899999999999999999774
No 9
>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}
Probab=46.20 E-value=6.5 Score=22.08 Aligned_cols=17 Identities=18% Similarity=0.683 Sum_probs=11.6
Q ss_pred hhHHHHHHHHhhcCCCC
Q psy4875 79 IFAWEIRDRLLQEGVCS 95 (100)
Q Consensus 79 rFaweir~~l~~~g~c~ 95 (100)
-|.|-+|.++...+.+|
T Consensus 13 cfLWHvRkrfad~~lgD 29 (70)
T d1aila_ 13 CFLWHVRKQVVDQELGD 29 (70)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHhhccccC
Confidence 46777777777766665
No 10
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=42.85 E-value=2.3 Score=25.51 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=31.4
Q ss_pred CccccchHHHhhhHhhcc--------ccccc---c-cCCCCCCcCcHHHHHHHHHHHhhCCCcchhhhhccccccc
Q psy4875 1 LKFLTLLCPLVHRYYETG--------SIRPR---A-IGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEG 64 (100)
Q Consensus 1 ~~~~gcvskiL~r~~etG--------si~Pg---~-iGGskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~g 64 (100)
|||+|.+|.-|--|++-- ....+ . ..|..|......+-.......++.-.++-.+|.+.|++.|
T Consensus 34 ~~Fl~I~ssNLDEFFmVRVAgLk~~~~~~~~~~~~~~d~~~~~~~L~~I~~~v~~~~~~q~~~~~~~LlP~L~~~G 109 (109)
T d2o8ra1 34 IKFLSIFSSNLEEFYTVRVAYHQAVLQKRRDRSEAEEDSDADAHILQAIRETVIRQDELYYRIFYDQILPTLEEHG 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478888888887777511 11111 1 2234444433444444444444444466667888887765
No 11
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=36.34 E-value=23 Score=20.74 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=16.5
Q ss_pred CcCcHHHHHHHHHHHhhCCC
Q psy4875 31 RVATAEVVSKISHYKRECPS 50 (100)
Q Consensus 31 ~~~s~~~vskIl~~~~e~ps 50 (100)
..+.+++...|.+.|+++|+
T Consensus 143 ~lVP~~V~~yI~e~~~~~~~ 162 (163)
T d1o6ba_ 143 EFVPPEVELALQQKFRQGGS 162 (163)
T ss_dssp TTSCHHHHHHHHHHHHSCSC
T ss_pred HhCCHHHHHHHHHHHhccCC
Confidence 35678999999999998875
No 12
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=27.31 E-value=12 Score=20.01 Aligned_cols=15 Identities=7% Similarity=0.102 Sum_probs=13.1
Q ss_pred hHHHhhhHhhccccc
Q psy4875 7 LCPLVHRYYETGSIR 21 (100)
Q Consensus 7 vskiL~r~~etGsi~ 21 (100)
||++|.+|.+.|-|.
T Consensus 46 vsr~L~~l~~~glI~ 60 (69)
T d1i5za1 46 VGRILKMLEDQNLIS 60 (69)
T ss_dssp HHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCEE
Confidence 799999999999775
No 13
>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=31 Score=22.84 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=23.1
Q ss_pred CCCCCcCcHHHHHHHHHHHhhCCCcc
Q psy4875 27 GSKPRVATAEVVSKISHYKRECPSIF 52 (100)
Q Consensus 27 GskP~~~s~~~vskIl~~~~e~psif 52 (100)
|.+|....++.+....+++.+||+=|
T Consensus 319 gw~p~~slee~I~~~i~w~~~n~~~~ 344 (346)
T d1ek6a_ 319 GWTAALGLDRMCEDLWRWQKQNPSGF 344 (346)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCTTCS
T ss_pred CCCcCCCHHHHHHHHHHHHHhCHhhc
Confidence 78998888999999999999999755
No 14
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=41 Score=18.27 Aligned_cols=58 Identities=19% Similarity=0.167 Sum_probs=38.1
Q ss_pred CCCCCcCcHHHHHHHHHHHhhCCCcchhhhhcccccc-ccccccCCCCCCCcchhHHHHHHHHhhcC
Q psy4875 27 GSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQE-GVCSNDNIPSRECPSIFAWEIRDRLLQEG 92 (100)
Q Consensus 27 GskP~~~s~~~vskIl~~~~e~psif~~eIR~rL~~~-gvc~~~~~ps~ss~~rFaweir~~l~~~g 92 (100)
|+..+..|+..+..+...|..|+-....++. .|+.. |+ +...+...|.+-|.++-...
T Consensus 4 ~s~~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~-~La~~~gL-------~~~qV~~WF~NrR~k~k~~~ 62 (76)
T d2ecca1 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQ-KLEQITGL-------PRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHH-HHHHHTCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHcc-------CHHHHHHHHHHHHHHHHhch
Confidence 4555667899999999999999866655543 34332 33 44556676777777666543
Done!