RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4875
         (100 letters)



>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 61

 Score = 93.1 bits (232), Expect = 2e-27
 Identities = 34/49 (69%), Positives = 41/49 (83%)

Query: 25 IGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPS 73
          IGGSKP+VAT +VV KI+ YKR+ P++FAWEIRDRLL E VC ND +PS
Sbjct: 2  IGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS 50


>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 65

 Score = 90.9 bits (226), Expect = 1e-26
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 26 GGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSNDNIPS 73
          GGSKPRVAT EVVSKI+ YK+ECPSIFAWEIRDRLL EGVC+NDNIPS
Sbjct: 1  GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPS 48


>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 73.4 bits (180), Expect = 5e-19
 Identities = 36/65 (55%), Positives = 49/65 (75%)

Query: 10  LVHRYYETGSIRPRAIGGSKPRVATAEVVSKISHYKRECPSIFAWEIRDRLLQEGVCSND 69
           +++RY ETGSIRP  IGGSKPR+AT E+ ++I  YKR  P +F+WEIR++L++EGVC   
Sbjct: 52  ILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRS 111

Query: 70  NIPSR 74
             PS 
Sbjct: 112 TAPSV 116


>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 63

 Score = 24.6 bits (54), Expect = 0.96
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 10 LVHRYYETGSIRP 22
          ++ RYYETGSI+P
Sbjct: 50 ILGRYYETGSIKP 62


>d1yloa1 b.49.3.1 (A:67-147) Aminopeptidase YpdE {Shigella
          flexneri [TaxId: 623]}
          Length = 81

 Score = 23.9 bits (52), Expect = 2.3
 Identities = 5/29 (17%), Positives = 10/29 (34%)

Query: 10 LVHRYYETGSIRPRAIGGSKPRVATAEVV 38
          +V      G+I    +G  +      + V
Sbjct: 3  MVRSISREGAIDVLPVGNVRMAARQLQPV 31


>d1vhoa1 b.49.3.1 (A:70-152) Putative endoglucanase TM1048
          {Thermotoga maritima [TaxId: 2336]}
          Length = 83

 Score = 23.5 bits (51), Expect = 3.3
 Identities = 8/26 (30%), Positives = 10/26 (38%)

Query: 13 RYYETGSIRPRAIGGSKPRVATAEVV 38
             E    R   +GG  P+V  A  V
Sbjct: 5  SKVEGQFARLEPVGGVDPKVVYASKV 30


>d1vhea1 b.49.3.1 (A:73-162) Hypothetical protein YsdC {Bacillus
          subtilis [TaxId: 1423]}
          Length = 90

 Score = 23.6 bits (51), Expect = 3.9
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 16 ETGSIRPRAIGGSKPRVATAEVV 38
          + G IR + +GG   +V  A+ V
Sbjct: 9  DKGFIRFQTVGGWWAQVMLAQRV 31


>d1m9sa4 b.34.11.1 (A:552-629) Internalin B, C-terminal domains
          {Listeria monocytogenes [TaxId: 1639]}
          Length = 78

 Score = 23.2 bits (50), Expect = 4.3
 Identities = 3/19 (15%), Positives = 5/19 (26%)

Query: 28 SKPRVATAEVVSKISHYKR 46
            P          ++ YK 
Sbjct: 23 KVPVADNPVKRGTLAKYKN 41


>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 91

 Score = 23.2 bits (50), Expect = 4.5
 Identities = 8/29 (27%), Positives = 13/29 (44%)

Query: 10 LVHRYYETGSIRPRAIGGSKPRVATAEVV 38
          +V    + G +R   IGG  P+   A+  
Sbjct: 3  MVTHIEKNGFLRVAPIGGVDPKTLIAQRF 31


>d2grea1 b.49.3.1 (A:74-186) Deblocking aminopeptidase YhfE
          {Bacillus cereus [TaxId: 1396]}
          Length = 113

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 6/30 (20%), Positives = 9/30 (30%)

Query: 10 LVHRYYETGSIRPRAIGGSKPRVATAEVVS 39
          +V      G +    IGG +      E   
Sbjct: 3  MVKEIKPDGRLSLSMIGGFRWNSVEGEYCE 32


>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 270

 Score = 22.9 bits (49), Expect = 9.8
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 2   KFLTLLCPLVHRYYETGSIRPRAIGGSKPRVATAEVVSKI-----SHYKRECPSIFAWEI 56
               L CP    Y++T  +    +  +K +   AEVV ++       YK    +I   ++
Sbjct: 77  GLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQL 136

Query: 57  RDR 59
             R
Sbjct: 137 EKR 139


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,113
Number of extensions: 15583
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 14
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)