BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4876
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 417 bits (1072), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 246/349 (70%), Gaps = 26/349 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 80 LKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 139
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LW+ S + + + P E + SVAWI+EG L V
Sbjct: 140 LWSASSGDILQLLQMEQP------------------------GEYISSVAWIKEGNYLAV 175
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RVG+L+WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 235
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAV 293
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW NVLA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 294 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 353
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
QNQL+IWKYP++ KVAEL GH++RVL+L MSPD TV SA ADETLRLW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 58/378 (15%)
Query: 102 GGDRYIPNRSAIDTELSHYLLTRDENMED-LSPSEREKRKAMSELVHGKDIQKSRVLAFQ 160
GGDRYIP+RSA E++ +LL+++ E+ +P+++E +KA + ++G D++++++L
Sbjct: 7 GGDRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLS 66
Query: 161 NKAPPPPDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYL 220
K P+GYQN LKV + T S K C R SL
Sbjct: 67 GKPQNAPEGYQNRLKVLYSQKATPG--------------SSRKTC------RYIPSLPDR 106
Query: 221 LFKIKPLPHLMAIKILSNTSKTPMG-SKPTSRYI-PLTADRILDAPEI-QNDYYLNLIDW 277
+ + + + ++ +S + + S Y+ ++ IL ++ Q Y++ + W
Sbjct: 107 ILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAW 166
Query: 278 -SHFNVLAVALGGS-IYLWNGESDSNSKYIICQSPLVQELTSKCI-------------QD 322
N LAV + + LW+ + + + S V L+ D
Sbjct: 167 IKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHD 226
Query: 323 NRAID-HLMDLEGN-ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK----CRTMDGH 376
R + H+ L G+ + VC + W +G L G + V +W + + +T H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 377 DVRVGALA---WNTYILSSGSRCGNIVHHDVR----SRDHKVALLQNHTQEVCGLKWSPD 429
V A+A W + +L++G G +R ++ + H+Q VC + WSP
Sbjct: 287 QGAVKAVAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPH 342
Query: 430 GRYLASGGN--DNLLNIW 445
+ L SG N L IW
Sbjct: 343 YKELISGHGFAQNQLVIW 360
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/349 (57%), Positives = 246/349 (70%), Gaps = 26/349 (7%)
Query: 233 IKILSNTSKTPMGSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIY 292
+K+L + TP S+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+Y
Sbjct: 69 LKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVY 128
Query: 293 LWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352
LW+ S + + + P E + SVAWI+EG L V
Sbjct: 129 LWSASSGDILQLLQMEQP------------------------GEYISSVAWIKEGNYLAV 164
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
GTS VQLWDV +K+ R M H RVG+L+WN+YILSSGSR G+I HHDVR +H VA
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 224
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L H+QEVCGL+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAV 282
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
AWCPW NVLA+GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFA
Sbjct: 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 342
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
QNQL+IWKYP++ KVAEL GH++RVL+L MSPD TV SA ADETLRLW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 156/372 (41%), Gaps = 58/372 (15%)
Query: 108 PNRSAIDTELSHYLLTRDENMED-LSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPP 166
P+RSA E++ +LL+++ E+ +P+++E +KA + ++G D++++++L K
Sbjct: 2 PHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNA 61
Query: 167 PDGYQNSLKVALNSAITSSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKP 226
P+GYQN LKV + T S K C R SL +
Sbjct: 62 PEGYQNRLKVLYSQKATPG--------------SSRKTC------RYIPSLPDRILDAPE 101
Query: 227 LPHLMAIKILSNTSKTPMG-SKPTSRYI-PLTADRILDAPEI-QNDYYLNLIDW-SHFNV 282
+ + + ++ +S + + S Y+ ++ IL ++ Q Y++ + W N
Sbjct: 102 IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY 161
Query: 283 LAVALGGS-IYLWNGESDSNSKYIICQSPLVQELTSKCI-------------QDNRAID- 327
LAV + + LW+ + + + S V L+ D R +
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH 221
Query: 328 HLMDLEGN-ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK----CRTMDGHDVRVGA 382
H+ L G+ + VC + W +G L G + V +W + + +T H V A
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 383 LA---WNTYILSSGSRCGNIVHHDVR----SRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435
+A W + +L++G G +R ++ + H+Q VC + WSP + L S
Sbjct: 282 VAWCPWQSNVLATG---GGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELIS 337
Query: 436 GGN--DNLLNIW 445
G N L IW
Sbjct: 338 GHGFAQNQLVIW 349
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 406 bits (1043), Expect = e-113, Method: Compositional matrix adjust.
Identities = 196/337 (58%), Positives = 240/337 (71%), Gaps = 26/337 (7%)
Query: 245 GSKPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKY 304
GS+ T RYIP DRILDAPEI+NDYYLNL+DWS NVLAVAL S+YLW+ S +
Sbjct: 1 GSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQL 60
Query: 305 IICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDV 364
+ + P E + SVAWI+EG L VGTS VQLWDV
Sbjct: 61 LQMEQP------------------------GEYISSVAWIKEGNYLAVGTSSAEVQLWDV 96
Query: 365 SAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424
+K+ R M H RVG+L+WN+YILSSGSR G+I HHDVR +H VA L H+QEVCGL
Sbjct: 97 QQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGL 156
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+W+PDGR+LASGGNDNL+N+W PG+ + P+ + ++HQ AVKA+AWCPW NVLA+
Sbjct: 157 RWAPDGRHLASGGNDNLVNVWPSAPGEGGWV--PLQTFTQHQGAVKAVAWCPWQSNVLAT 214
Query: 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544
GGGT+DRHI WNV SGACL ++D SQVC++LW+ YKEL+S HGFAQNQL+IWKYP++
Sbjct: 215 GGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274
Query: 545 VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
KVAEL GH++RVL+L MSPD TV SA ADETLRLW
Sbjct: 275 AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 295 bits (755), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 203/336 (60%), Gaps = 33/336 (9%)
Query: 248 PTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIIC 307
P R T +R+LDAP I +DYYLNL+DWS+ NV+AVAL ++Y+WN +S S
Sbjct: 72 PAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGS------- 124
Query: 308 QSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK 367
+ L + + + V SV W +G L VG G V ++DV ++
Sbjct: 125 ------------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166
Query: 368 KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427
K RTM GH RVG L+WN ++LSSGSR G I HHDVR +H++ LQ H+ EVCGL W
Sbjct: 167 TKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487
DG LASGGNDN++ IW S+ P + + H AAVKA+AWCPW N+LA+GGG
Sbjct: 227 SDGLQLASGGNDNVVQIWDA------RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280
Query: 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--LV 545
T D+ I+FWN ++GA ++++D SQV +L+W+ KE++S HGF N L IW Y S L
Sbjct: 281 TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT 340
Query: 546 KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
K ++ H RVL A+SPD + +A +DE L+ W
Sbjct: 341 KQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 90 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 150 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 208
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 209 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 260
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 261 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 318
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 319 AALENDKTIKLW 330
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 94
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 95 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 152 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 204 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 255
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 256 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 284
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 285 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 92 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 152 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 210
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 211 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 262
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 263 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 320
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 321 AALENDKTIKLW 332
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 96
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 97 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 151
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + L HS V + + D + ++S+ D R+W
Sbjct: 152 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 206 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 257
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 258 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 286
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 287 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 332
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 27/256 (10%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS- 129
Query: 396 CGNIVHHDVRSRDHKVAL----LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
VR D K + L H+ V + ++ DG + S D L IW GQ
Sbjct: 130 ----FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI---- 507
+ + V + + P +LA+ T D + W+ S G CL +
Sbjct: 186 CLKTL-----IDDDNPPVSFVKFSPNGKYILAA---TLDNDLKLWDYSKGKCLKTYTGHK 237
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
+ K + A + K +VS G N + IW + V +L GH+ V++ A P E
Sbjct: 238 NEKYCIFANFSVTGGKWIVS--GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 568 TVLSAGA--DETLRLW 581
+ SA D+T++LW
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 75
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 76 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 130
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + + L HS V + + D + ++S+ D R+W
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T ++LWD S K +T GH
Sbjct: 185 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH------- 236
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DN++
Sbjct: 237 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNMVY 265
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 266 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 193 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 245 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 303 AALENDKTIKLW 314
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 78
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 79 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 136 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 188 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 239
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 240 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 268
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 269 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 111/256 (43%), Gaps = 27/256 (10%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS- 129
Query: 396 CGNIVHHDVRSRDHKVAL----LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
VR D K + L H+ V + ++ DG + S D L IW GQ
Sbjct: 130 ----FDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 452 HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI---- 507
+ + V + + P +LA+ T D + W+ S G CL +
Sbjct: 186 CLKTL-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
+ K + A + K +VS G N + IW + V +L GH+ V++ A P E
Sbjct: 238 NEKYCIFANFSVTGGKWIVS--GSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 568 TVLSAGA--DETLRLW 581
+ SA D+T++LW
Sbjct: 296 IIASAALENDKTIKLW 311
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 75
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 76 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 130
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + + L HS V + + D + ++S+ D R+W
Sbjct: 131 DESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 185 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 236
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DN++
Sbjct: 237 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNMVY 265
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 266 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 311
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 145 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 203
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 204 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 255
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 256 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 313
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 314 AALENDKTIKLW 325
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 89
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 90 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 147 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 199 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 250
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 251 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 279
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 280 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 325
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 125/261 (47%), Gaps = 17/261 (6%)
Query: 323 NRAIDHLMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVG 381
NR HL L G + +V VA+ +G + + TV+LW+ + + +T+ GH V
Sbjct: 331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVR 389
Query: 382 ALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNL 441
+A++ + S + + L H+ V G+ +SPD + +AS +D
Sbjct: 390 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449
Query: 442 LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501
+ +W+ + Q + +L+ H ++V+ +A+ P +AS + D+ + WN +G
Sbjct: 450 VKLWN-------RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASA--SDDKTVKLWN-RNG 498
Query: 502 ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNL 560
L ++ S V + ++ D + + SA + +W + + L GHS+ V +
Sbjct: 499 QLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSVWGV 555
Query: 561 AMSPDETTVLSAGADETLRLW 581
A SPD T+ SA +D+T++LW
Sbjct: 556 AFSPDGQTIASASSDKTVKLW 576
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 132/264 (50%), Gaps = 23/264 (8%)
Query: 323 NRAIDHLMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVG 381
NR L L G + +V VA+ +G + + TV+LW+ + + +T+ GH V
Sbjct: 208 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVN 266
Query: 382 ALAW--NTYILSSGSRCGNIVHHDVRSRDHKV-ALLQNHTQEVCGLKWSPDGRYLASGGN 438
+A+ + ++S S + + +R+ ++ L H+ V G+ +SPDG+ +AS +
Sbjct: 267 GVAFRPDGQTIASASDDKTV---KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 323
Query: 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498
D + +W+ GQH + +L+ H ++V +A+ P +AS + D+ + WN
Sbjct: 324 DKTVKLWN-RNGQH------LQTLTGHSSSVWGVAFSP-DGQTIASA--SDDKTVKLWN- 372
Query: 499 SSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557
+G L ++ S V + ++ D + + SA + +W + + L GHS+ V
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSV 429
Query: 558 LNLAMSPDETTVLSAGADETLRLW 581
+A SPD+ T+ SA D+T++LW
Sbjct: 430 WGVAFSPDDQTIASASDDKTVKLW 453
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 123/261 (47%), Gaps = 17/261 (6%)
Query: 323 NRAIDHLMDLEG-NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVG 381
NR L L G + +V VA+ +G + + TV+LW+ + + +T+ GH V
Sbjct: 85 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVW 143
Query: 382 ALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNL 441
+A++ + S + + L H+ V G+ +SPDG+ +AS +D
Sbjct: 144 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT 203
Query: 442 LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501
+ +W+ + Q + +L+ H ++V+ +A+ P +AS + D+ + WN +G
Sbjct: 204 VKLWN-------RNGQLLQTLTGHSSSVRGVAFSP-DGQTIAS--ASDDKTVKLWN-RNG 252
Query: 502 ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNL 560
L ++ S V + + D + + SA + +W + + L GHS+ V +
Sbjct: 253 QLLQTLTGHSSSVNGVAFRPDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSVWGV 309
Query: 561 AMSPDETTVLSAGADETLRLW 581
A SPD T+ SA D+T++LW
Sbjct: 310 AFSPDGQTIASASDDKTVKLW 330
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L H+ V G+ +SPDG+ +AS +D + +W+ + Q + +L+ H ++V+ +A
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-------RNGQLLQTLTGHSSSVRGVA 105
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFA 532
+ P +AS + D+ + WN +G L ++ S V + ++ D + + SA
Sbjct: 106 FSP-DGQTIASA--SDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS--D 159
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ +W + + L GHS+ V +A SPD T+ SA D+T++LW
Sbjct: 160 DKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 92/182 (50%), Gaps = 19/182 (10%)
Query: 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH 460
H V+ R+ L+ H+ V G+ +SPDG+ +AS +D + +W+ + Q +
Sbjct: 3 HMGVKERNR----LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-------RNGQLLQ 51
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLWN 519
+L+ H ++V +A+ P +AS + D+ + WN +G L ++ S V + ++
Sbjct: 52 TLTGHSSSVWGVAFSP-DGQTIASA--SDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
D + + SA + +W + + L GHS+ V +A SPD T+ SA D+T++
Sbjct: 108 PDGQTIASAS--DDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 164
Query: 580 LW 581
LW
Sbjct: 165 LW 166
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 124 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 182
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 183 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 235 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 292
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 293 AALENDKTIKLW 304
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 68
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 69 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 126 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 178 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 229
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 230 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 258
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 259 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 129 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 187
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 188 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 240 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 297
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 298 AALENDKTIKLW 309
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 73
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 74 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 131 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 183 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 234
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 235 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 263
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 264 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 309
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 193 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 245 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 303 AALENDKTIKLW 314
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 78
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 79 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 136 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 188 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 239
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 240 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 268
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 269 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 314
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 128 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 187 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 239 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 297 AALENDKTIKLW 308
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 72
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 73 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 127
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + L HS V + + D + ++S+ D R+W
Sbjct: 128 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 182 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 233
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 234 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 262
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 263 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 308
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 128 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 186
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 187 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 239 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 297 AALENDKTIKLW 308
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 72
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 73 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 130 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 182 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 233
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 234 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 262
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 263 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 308
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 133 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 191
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 192 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 244 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 301
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 302 AALENDKTIKLW 313
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 77
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 78 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 132
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + L HS V + + D + ++S+ D R+W
Sbjct: 133 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 187 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 238
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 239 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 267
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 268 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 74 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 134 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 192
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 193 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 245 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 302
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 303 AALENDKTIKLW 314
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 12/169 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 78
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFA 532
W N+L S + D+ + W+VSSG CL ++ S V +N +VS G
Sbjct: 79 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS--GSF 133
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + + L HS V + + D + ++S+ D R+W
Sbjct: 134 DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 188 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 239
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 240 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 268
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 269 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 67 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 127 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 185
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 186 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 237
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 238 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 295
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 296 AALENDKTIKLW 307
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 71
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 72 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 129 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 181 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 232
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G G+++ SG DNL+
Sbjct: 233 -----------------------KNEKYCIFANFS--VTG------GKWIVSGSEDNLVY 261
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 262 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 307
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 129/284 (45%), Gaps = 32/284 (11%)
Query: 320 IQDNRAIDHLMDLEGN-ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ D D L+G+ ++V +++ G +L ++ T++LWD + RTM GHD
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193
Query: 379 RVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436
V +++ N + S SR I +V++ + V H + V ++ + DG +AS
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 437 GNDNLLNIWSGVPGQHTFSTQPIHS-LSRHQAAVKAIAWCP---WSPNVLASG------- 485
ND + +W +T+ + L H+ V+ I+W P +S A+G
Sbjct: 253 SNDQTVRVW-------VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 486 -------GGTADRHIYFWNVSSGACLDS-IDTKSQVCALLWNSDYKELVSAHGFAQNQLI 537
G+ D+ I W+VS+G CL + + + V +L++S K ++S L
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD--DKTLR 363
Query: 538 IWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W Y + + L+ H V +L V++ D+T+++W
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 460 HSLSRHQAAVKAIAWCP-WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLW 518
++LS H++ V + + P +S V AS T I W+ +G ++ + +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDAT----IKVWDYETGDFERTLKGHTDSVQDI- 156
Query: 519 NSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578
+ D+ + A A + +W + + +HGH V ++++ P+ ++SA D+T+
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 216
Query: 579 RLW 581
++W
Sbjct: 217 KMW 219
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 190 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 242 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 572 AGA--DETLRLW 581
A D+T++LW
Sbjct: 300 AALENDKTIKLW 311
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LA+ D L+ IW G+ ++S H+ + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 75
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 76 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 133 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 64/173 (36%), Gaps = 46/173 (26%)
Query: 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGAL 383
+ + L+D + N V V + G + T T++LWD S K +T GH
Sbjct: 185 QCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH------- 236
Query: 384 AWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLN 443
++ K + N + V G KW + SG DNL+
Sbjct: 237 -----------------------KNEKYCIFANFS--VTGGKW------IVSGSEDNLVY 265
Query: 444 IWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
IW + + + + L H V + A C + N++AS D+ I W
Sbjct: 266 IW------NLQTKEIVQKLQGHTDVVISTA-CHPTENIIASAALENDKTIKLW 311
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 98/213 (46%), Gaps = 15/213 (7%)
Query: 377 DVRVGALAWN---TYILSSGS-RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432
D R LAWN T + S G R I + S K L + H + V + WSP G Y
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY 75
Query: 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492
LAS D IW Q F + + +L H+ VK++AW P S N+LA+ + D+
Sbjct: 76 LASASFDATTCIWK--KNQDDF--ECVTTLEGHENEVKSVAWAP-SGNLLAT--CSRDKS 128
Query: 493 IYFWNVSSG---ACLDSIDTKSQ-VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548
++ W V C+ +++ +Q V ++W+ + L SA +L + V A
Sbjct: 129 VWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCA 188
Query: 549 ELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L GH + V +LA P + S D T+R+W
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 102/257 (39%), Gaps = 39/257 (15%)
Query: 274 LIDWSHFNVLAVALGGS--IYLWNGESDS------------NSKYIICQSPLVQELTSK- 318
+ W+ L + GG I +W E DS + + SP L S
Sbjct: 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 319 -----CI--QDNRAIDHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK- 369
CI ++ + + LEG+EN V SVAW G +L + +V +W+V + +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 370 --CRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDH-KVALLQNHTQEVCGL 424
++ H V + W+ +L+S S + + D A L+ H V L
Sbjct: 141 ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 200
Query: 425 KWSPDGRYLASGGNDNLLNIWSG-VPGQHTF--------STQPIHSLSR-HQAAVKAIAW 474
+ P G+ LAS +D + IW +PG S + I +LS H + IAW
Sbjct: 201 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAW 260
Query: 475 CPWSPNVLASGGGTADR 491
C + + + G A R
Sbjct: 261 CQLTGALATACGDDAIR 277
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 24/148 (16%)
Query: 370 CRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVA------------- 412
C T++GH+ V +LA++ S R I + + VA
Sbjct: 187 CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT 246
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW----SGVPGQHTFSTQPIHSLSRHQAA 468
L H++ + + W LA+ D+ + ++ + P Q TFS H H
Sbjct: 247 LSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA-HLHQAHSQD 305
Query: 469 VKAIAWCPWSPNVLASGGGTADRHIYFW 496
V +AW P P +LAS + D + FW
Sbjct: 306 VNCVAWNPKEPGLLAS--CSDDGEVAFW 331
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 190 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 242 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 572 AGA--DETLRLW 581
A D+T++L+
Sbjct: 300 AALENDKTIKLY 311
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 75
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 76 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 133 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 19/252 (7%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR 395
+ VAW + +L + T+++WDVS+ K +T+ GH V +N + ++ SGS
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS 455
++ DV++ + L H+ V + ++ DG + S D L IW GQ +
Sbjct: 131 DESVRIWDVKT-GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKT 189
Query: 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI----DTKS 511
+ V + + P +LA+ T D + W+ S G CL + + K
Sbjct: 190 L-----IDDDNPPVSFVKFSPNGKYILAA---TLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571
+ A + K +VS G N + IW + V +L GH+ V++ A P E + S
Sbjct: 242 CIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 299
Query: 572 AGA--DETLRLW 581
A D+T++L+
Sbjct: 300 AALENDKTIKLF 311
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L HT+ V +K+SP+G +LAS D L+ IW G+ ++S H+ + +A
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE------KTISGHKLGISDVA 75
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
W N+L S + D+ + W+VSSG CL ++ S + L+ + F +
Sbjct: 76 WSS-DSNLLVS--ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 534 NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + IW + + L HS V + + D + ++S+ D R+W
Sbjct: 133 S-VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 31/274 (11%)
Query: 327 DHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW 385
+ L+D++ +E+ V A+ + + ++ V++WD + K T D H +V +
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 386 ----NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNL 441
N +L++GS + D+ ++ + + HT V ++SPD LAS D
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGT 773
Query: 442 LNIWS----------GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491
L +W V S P + + VK +W ++ + A
Sbjct: 774 LRLWDVRSANERKSINVKRFFLSSEDPPEDV---EVIVKCCSWSADGDKIIVA----AKN 826
Query: 492 HIYFWNVSSGACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547
+ +++ + L I T Q C S Y L + +Q + +W S +KV
Sbjct: 827 KVLLFDIHTSGLLAEIHTGHHSTIQYCDF---SPYDHL-AVIALSQYCVELWNIDSRLKV 882
Query: 548 AELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH + V + SPD ++ L+A D+T+R+W
Sbjct: 883 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT V +S DG+ +AS G D L ++ G+ + H+ V C
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA------HEDEVLC---CA 671
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQ 535
+S + +AD+ + W+ ++G + + D S QV + + L+ A G
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L +W + GH+ V + SPD+ + S AD TLRLW
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT----YILSSGSRCGNIVHHDVRSRDHKVA 412
GTV++W+V + R H V + A ++ + +S + I D+ S H+
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-- 1129
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI---HSLSRHQAAV 469
L+ H V +S DG LA+G ++ + IW+ GQ S PI + H V
Sbjct: 1130 -LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1188
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501
+ + P S ++++GG ++ +WNV++G
Sbjct: 1189 TDVCFSPDSKTLVSAGG-----YLKWWNVATG 1215
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
H + V ++++ DG+ L S D+++ +W+ G + F L HQ VK
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQ 1061
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGAC-LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ 535
S + S GT + WNV +G D + V + +SD + S A
Sbjct: 1062 DSRLLSWSFDGT----VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS--ADKT 1115
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
IW + L + EL GH+ V A S D + + + +R+W
Sbjct: 1116 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1161
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 49/255 (19%)
Query: 362 WDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHH-------DVR--------- 405
WD +K+ +G + R G + ++ +G+ GN+ D +
Sbjct: 111 WDSESKRIAAVGEGRE-RFG----HVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS 165
Query: 406 -SRDHKVALLQN-----------HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453
S D+ VA+ + HT+ V ++++PDG AS G D + +++GV G T
Sbjct: 166 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225
Query: 454 --FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511
F + +++ H +V + W P + ++ +AD+ I WNV++ +I +
Sbjct: 226 GVFEDDSLKNVA-HSGSVFGLTWSPDGTKIASA---SADKTIKIWNVATLKVEKTIPVGT 281
Query: 512 QV----CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-HGHSARVLNLAMSPDE 566
++ ++W +SA+GF I + P L + ++ +GH+ + L+ S D
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGF-----INFVNPELGSIDQVRYGHNKAITALSSSADG 336
Query: 567 TTVLSAGADETLRLW 581
T+ SA A+ + W
Sbjct: 337 KTLFSADAEGHINSW 351
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWS-GVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475
HT +V + WSPD LA+G DN + +W+ P H + H++S +V ++ W
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS----SVNSVIWL 590
Query: 476 PWSPNVLASGGGTADRHIYFWNV 498
+ + S G D +I FWNV
Sbjct: 591 --NETTIVSAG--QDSNIKFWNV 609
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 72/180 (40%), Gaps = 27/180 (15%)
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSLSRHQAAVKA 471
+ H+ + K SP G Y ASG + IW H +T P+ S VK
Sbjct: 54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-----GPVKD 108
Query: 472 IAWCPWSPNVLASGGGTAD-RHIYFWNVSS--------GACLDSIDTK-SQVCALLWNSD 521
I+W S + A G G H++ ++ + ++S+D K S+ ++ SD
Sbjct: 109 ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSD 168
Query: 522 YKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
N + I++ P + H+ V ++ +PD + S G D T+ L+
Sbjct: 169 -----------DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 24/165 (14%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486
S D +++A GG D+ ++++ + G + I H A + ++A+ ++A+
Sbjct: 457 SNDKQFVAVGGQDSKVHVYK-LSGASVSEVKTI----VHPAEITSVAFSNNGAFLVAT-- 509
Query: 487 GTADRHIYFWNVSSGACLDSIDT----KSQVCALLWNSDYKELVSAHGFAQNQLIIWK-- 540
R + ++V++ L ++ ++V + W+ D L A G N +I+W
Sbjct: 510 -DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL--ATGSLDNSVIVWNMN 566
Query: 541 ----YPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+P ++K A H+ +N + +ETT++SAG D ++ W
Sbjct: 567 KPSDHPIIIKGA----HAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 327 DHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGA 382
D L ++ + +V + W +G + ++ T+++W+V+ K +T+ D ++G
Sbjct: 231 DSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG- 289
Query: 383 LAWNTYILSSGSRCG--NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN 440
+ W L S S G N V+ ++ S D + H + + L S DG+ L S +
Sbjct: 290 IIWTKQALVSISANGFINFVNPELGSIDQ---VRYGHNKAITALSSSADGKTLFSADAEG 346
Query: 441 LLNIW 445
+N W
Sbjct: 347 HINSW 351
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 327 DHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW 385
+ L++++ +E+ V A+ + + + V++W+ + T D H +V +
Sbjct: 654 EKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHF 713
Query: 386 NT----YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNL 441
+L++GS + D+ ++ + + HT V ++SPD + LAS D
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDKLLASCSADGT 772
Query: 442 LNIWSGVPGQHTFST---QPIHSLSRHQAAVKAIA-WCPWSPNVLASGGGTADRHIYFWN 497
L +W S Q +L Q ++ I C WS + A A I+ ++
Sbjct: 773 LKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADG-ARIMVAAKNKIFLFD 831
Query: 498 VSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557
+ + L I T + + ++ +Q + +W S KVA+ GH + V
Sbjct: 832 IHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWV 891
Query: 558 LNLAMSPDETTVLSAGADETLRLW 581
+ SPD ++ L++ D+T+RLW
Sbjct: 892 HGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT V +S DG+ +AS G D L ++ G+ L +A + C
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGE---------KLLEIKAHEDEVLCCA 670
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV--CALLWNSDYKELVSAHGFAQN 534
+S + + D+ + WN +G + + D S+ C NS + L+ A G +
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH-HLLLATGSSDC 729
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L +W + GH+ V + SPD+ + S AD TL+LW
Sbjct: 730 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
H + V ++++ D + L S +D + +W+ + F L HQ VK
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-------LRGHQETVKDFRLLK 1060
Query: 477 WSPNVLASGGGTADRHIYFWNVSSG-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ 535
S + S GT + WN+ +G D + + V + + D + S A
Sbjct: 1061 NSRLLSWSFDGT----VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTS--ADKT 1114
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
IW + L+ + EL GH+ V A S D T + + + +R+W
Sbjct: 1115 AKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 358 TVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRD--HKVAL 413
T ++W + GH+ VR A + ++ +L++G G I +V + + H A
Sbjct: 1114 TAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAP 1173
Query: 414 LQ-----NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ--HTFST 456
L H V L +SPDG+ L S G + W+ V G+ TF T
Sbjct: 1174 LSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYT 1221
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 116/274 (42%), Gaps = 31/274 (11%)
Query: 327 DHLMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW 385
+ L+D++ +E+ V A+ + + ++ V++WD + K T D H +V +
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 386 ----NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNL 441
N +L++GS + D+ ++ + + HT V ++SPD LAS D
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGT 766
Query: 442 LNIWS----------GVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491
L +W V S P + + VK +W ++ + A
Sbjct: 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDV---EVIVKCCSWSADGDKIIVA----AKN 819
Query: 492 HIYFWNVSSGACLDSIDTKS----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547
+ +++ + L I T Q C S Y L + +Q + +W S +KV
Sbjct: 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDF---SPYDHL-AVIALSQYCVELWNIDSRLKV 875
Query: 548 AELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH + V + SPD ++ L+A D+T+R+W
Sbjct: 876 ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 10/166 (6%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT V +S DG+ +AS G D L ++ G+ +A + C
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---------KAHEDEVLCCA 664
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQ 535
+S + +AD+ + W+ ++G + + D S QV + + L+ A G
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L +W + GH+ V + SPD+ + S AD TLRLW
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT----YILSSGSRCGNIVHHDVRSRDHKVA 412
GTV++W+V + R H V + A ++ + +S + I D+ S H+
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-- 1122
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI---HSLSRHQAAV 469
L+ H V +S DG LA+G ++ + IW+ GQ S PI + H V
Sbjct: 1123 -LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501
+ + P S ++++GG ++ +WNV++G
Sbjct: 1182 TDVCFSPDSKTLVSAGG-----YLKWWNVATG 1208
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 14/166 (8%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
H + V ++++ DG+ L S D+++ +W+ G + F L HQ VK
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-------LQAHQETVKDFRLLQ 1054
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGAC-LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQ 535
S + S GT + WNV +G D + V + +SD + S A
Sbjct: 1055 DSRLLSWSFDGT----VKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS--ADKT 1108
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
IW + L + EL GH+ V A S D + + + +R+W
Sbjct: 1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIW 1154
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 109/240 (45%), Gaps = 29/240 (12%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
G+S TV++WDV+ + T+ H V L +N ++ + S+ +I D+ S
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 413 --LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470
+L H V + + D +Y+ S D + +W +T + + + +L+ H+ +
Sbjct: 249 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW------NTSTCEFVRTLNGHK---R 297
Query: 471 AIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHG 530
IA + ++ S G++D I W++ GACL ++ ++ + D K +VS G
Sbjct: 298 GIACLQYRDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCI-RFDNKRIVS--G 352
Query: 531 FAQNQLIIWKYPSLVK---------VAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
++ +W + + + L HS RV L DE ++S+ D+T+ +W
Sbjct: 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIW 410
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563
L I +S+ ++ Y + G N + IW +L L GH+ VL L
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY- 181
Query: 564 PDETTVLSAGADETLRLW 581
DE +++ +D T+R+W
Sbjct: 182 -DERVIITGSSDSTVRVW 198
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 130/322 (40%), Gaps = 62/322 (19%)
Query: 300 SNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTV 359
+N YI+ L +E+ ++ ++++DH VC V + +G L G + T
Sbjct: 38 TNDYYILYNPALPREID---VELHKSLDH------TSVVCCVKFSNDGEYLATGCN-KTT 87
Query: 360 QLWDVS-------------AKKKCRTMDGHD-------VRVGALAWNTYILSSGSRCGNI 399
Q++ VS A K ++ +R + + L++G+ I
Sbjct: 88 QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLI 147
Query: 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459
D+ +R V +LQ H Q++ L + P G L SG D + IW GQ + +
Sbjct: 148 RIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI- 205
Query: 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--------KS 511
+ V +A P +A+ G+ DR + W+ +G ++ +D+ K
Sbjct: 206 ------EDGVTTVAVSPGDGKYIAA--GSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 512 QVCALLWNSDYKELVSAHGFAQNQLIIW-----------KYPSLVKVAELH-GHSARVLN 559
V ++++ D + +VS G + +W K P+ + GH VL+
Sbjct: 258 SVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 315
Query: 560 LAMSPDETTVLSAGADETLRLW 581
+A + ++ +LS D + W
Sbjct: 316 VATTQNDEYILSGSKDRGVLFW 337
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 23/150 (15%)
Query: 343 WIQEGYMLGV-------------GTSLGT-VQLWDVSAKKKCRTMDGHDVRVGALAW--N 386
W EG+ LGV +SL ++LWD+ K+ +++D V LA+ +
Sbjct: 74 WSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD 133
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446
+ L++G+ G + V S + +L + + + +SPDG+YLASG D ++NI+
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 447 GVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
G + +H+L H ++++ + P
Sbjct: 193 IATG------KLLHTLEGHAMPIRSLTFSP 216
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483
L +SPD +YLA+G + +NI+ G+ +S L + +IA+ P LA
Sbjct: 128 LAFSPDSQYLATGTHVGKVNIFGVESGKKEYS------LDTRGKFILSIAYSP-DGKYLA 180
Query: 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQ-VCALLWNSDYKELVSAHGFAQNQLIIWKYP 542
SG D I +++++G L +++ + + +L ++ D + LV+A ++ ++
Sbjct: 181 SGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238
Query: 543 SLVKVAELHGHSARVLNLAMSPDET 567
+L L GH++ VLN+A PD+T
Sbjct: 239 NLA--GTLSGHASWVLNVAFCPDDT 261
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 321 QDNRAIDHLMDLEGNENVCS-VAW-IQEGYMLGVGTSLGTVQLWDV---SAKKKCRTMDG 375
+++R ID G+ V VAW + + G + +WD + K T+D
Sbjct: 216 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275
Query: 376 HDVRVGALAWNTY---ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR- 431
H V L++N Y IL++GS + D+R+ K+ ++H E+ ++WSP
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 432 YLASGGNDNLLNIWSGVPGQHTFSTQ-----PIHSLSRHQAAVKAIAWCPWSPN 480
LAS G D L++W ST+ P L H I+ W+PN
Sbjct: 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 389
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 347 GYMLGVGTSLGTVQLWDVSAK-KKCRTMD------GHDVRVGALAWNTY---ILSSGSRC 396
GY+L T+ LWD++A K+ R +D GH V +AW+ + S +
Sbjct: 195 GYLLSASDD-HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 397 GNIVHHDVRSRDHKVA--LLQNHTQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHT 453
++ D R+ + + HT EV L ++P + LA+G D + +W +
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-- 311
Query: 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV 513
+HS H+ + + W P + +LAS G DR ++ W++S S +
Sbjct: 312 ---LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDG 366
Query: 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL-SA 572
EL+ HG GH+A++ + + +P+E ++ S
Sbjct: 367 PP--------ELLFIHG---------------------GHTAKISDFSWNPNEPWIICSV 397
Query: 573 GADETLRLW 581
D +++W
Sbjct: 398 SEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 321 QDNRAIDHLMDLEGNENVCS-VAW-IQEGYMLGVGTSLGTVQLWDV---SAKKKCRTMDG 375
+++R ID G+ V VAW + + G + +WD + K T+D
Sbjct: 218 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 277
Query: 376 HDVRVGALAWNTY---ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR- 431
H V L++N Y IL++GS + D+R+ K+ ++H E+ ++WSP
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 432 YLASGGNDNLLNIWSGVPGQHTFSTQ-----PIHSLSRHQAAVKAIAWCPWSPN 480
LAS G D L++W ST+ P L H I+ W+PN
Sbjct: 338 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 102/249 (40%), Gaps = 51/249 (20%)
Query: 347 GYMLGVGTSLGTVQLWDVSAK-KKCRTMD------GHDVRVGALAWNTY---ILSSGSRC 396
GY+L T+ LWD++A K+ R +D GH V +AW+ + S +
Sbjct: 197 GYLLSASDD-HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 397 GNIVHHDVRSRDHKVA--LLQNHTQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHT 453
++ D R+ + + HT EV L ++P + LA+G D + +W +
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-- 313
Query: 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV 513
+HS H+ + + W P + +LAS G DR ++ W++S S +
Sbjct: 314 ---LKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDAEDG 368
Query: 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL-SA 572
EL+ HG GH+A++ + + +P+E ++ S
Sbjct: 369 PP--------ELLFIHG---------------------GHTAKISDFSWNPNEPWIICSV 399
Query: 573 GADETLRLW 581
D +++W
Sbjct: 400 SEDNIMQVW 408
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 408 DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFST-QPIHSLSRH 465
D V L+ HT V + W P + +ASG D + +W G +P+ +L H
Sbjct: 71 DKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 466 QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504
V +AW P + NVL S G D I W+V +GA +
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAG--XDNVILVWDVGTGAAV 167
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 40/206 (19%), Positives = 78/206 (37%), Gaps = 33/206 (16%)
Query: 338 VCSVAWI-QEGYMLGVGTSLGTVQLWDVS-------AKKKCRTMDGHDVRVGALAWNTY- 388
V +AW ++ G+ TV +W++ ++ T++GH RVG +AW+
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 389 --ILSSGSRCGNIVHHDVRSRDHKVALLQN-HTQEVCGLKWSPDGRYLASGGNDNLLNIW 445
+L S I+ DV + + L + H + + WS DG + + D + +
Sbjct: 144 QNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVI 203
Query: 446 SGVPGQHTF-------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN- 497
G T+P+H++ + + + S +R + W+
Sbjct: 204 EPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS-----------ERQVALWDT 252
Query: 498 --VSSGACLDSIDTKSQVCALLWNSD 521
+ L +DT S V ++ D
Sbjct: 253 KHLEEPLSLQELDTSSGVLLPFFDPD 278
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 321 QDNRAIDHLMDLEGNENVCS-VAW-IQEGYMLGVGTSLGTVQLWDV---SAKKKCRTMDG 375
+++R ID G+ V VAW + + G + +WD + K T+D
Sbjct: 220 KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 279
Query: 376 HDVRVGALAWNTY---ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR- 431
H V L++N Y IL++GS + D+R+ K+ ++H E+ ++WSP
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 432 YLASGGNDNLLNIWSGVPGQHTFSTQ-----PIHSLSRHQAAVKAIAWCPWSPN 480
LAS G D L++W ST+ P L H I+ W+PN
Sbjct: 340 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 108/237 (45%), Gaps = 39/237 (16%)
Query: 375 GHDVRVGALAWNTYI---LSSGSRCGNIVHHDVRS--RDHKVA----LLQNHTQEVCGLK 425
GH L+WN + L S S I D+ + ++H+V + HT V +
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 426 WSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
W L S +D L IW ++ +++P H++ H A V +++ P+S +LA+
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDT---RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT 299
Query: 485 GGGTADRHIYFWNVSSGAC-LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542
G +AD+ + W++ + L S ++ K ++ + W S + E + A +L +W
Sbjct: 300 G--SADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLHVW--- 353
Query: 543 SLVKVAE----------------LHG-HSARVLNLAMSPDETTVL-SAGADETLRLW 581
L K+ E +HG H+A++ + + +P+E ++ S D +++W
Sbjct: 354 DLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 408 DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFST-QPIHSLSRH 465
D V L+ HT V + W P + +ASG D + +W G +P+ +L H
Sbjct: 71 DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH 130
Query: 466 QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504
V +AW P + NVL S G D I W+V +GA +
Sbjct: 131 TKRVGIVAWHPTAQNVLLSAG--CDNVILVWDVGTGAAV 167
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 465 HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKE 524
H A V IAWCP + NV+AS G+ D + W + G + + + V L ++
Sbjct: 80 HTAPVLDIAWCPHNDNVIAS--GSEDCTVMVWEIPDGGLV--LPLREPVITLEGHTKRVG 135
Query: 525 LVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572
+V+ H AQN L+ +++ V ++ G A VL L T+ S
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDV-GTGAAVLTLGPDVHPDTIYSV 182
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 338 VCSVAWI-QEGYMLGVGTSLGTVQLWDVS-------AKKKCRTMDGHDVRVGALAWN--- 386
V +AW ++ G+ TV +W++ ++ T++GH RVG +AW+
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 387 -TYILSSGSRCGNIVHH-DVRSRDHKVALLQN-HTQEVCGLKWSPDGRYLASGGNDNLLN 443
+LS+G C N++ DV + + L + H + + WS DG + + D +
Sbjct: 144 QNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 444 IWSGVPGQHTF-------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
+ G T+P+H++ + + + S +R + W
Sbjct: 202 VIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS-----------ERQVALW 250
Query: 497 N---VSSGACLDSIDTKSQVCALLWNSD 521
+ + L +DT S V ++ D
Sbjct: 251 DTKHLEEPLSLQELDTSSGVLLPFFDPD 278
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 359 VQLWDV---SAKKKCRTMDGHDVRVGALAWNTY---ILSSGSRCGNIVHHDVRSRDHKVA 412
+ +WD + K ++D H V L++N Y IL++GS + D+R+ K+
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 413 LLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIW 445
++H E+ ++WSP LAS G D LN+W
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 39/237 (16%)
Query: 375 GHDVRVGALAWNTYI---LSSGSRCGNIVHHDVRS--RDHKVA----LLQNHTQEVCGLK 425
GH L+WN + L S S I D+ + ++ KV + HT V +
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 426 WSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
W L S +D L IW + +++P HS+ H A V +++ P+S +LA+
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDT---RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 485 GGGTADRHIYFWNVSSGAC-LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542
G+AD+ + W++ + L S ++ K ++ + W S + E + A +L +W
Sbjct: 292 --GSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW-SPHNETILASSGTDRRLNVW--- 345
Query: 543 SLVKVAE----------------LH-GHSARVLNLAMSPDETTVL-SAGADETLRLW 581
L K+ E +H GH+A++ + + +P+E V+ S D +++W
Sbjct: 346 DLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 338 VCSVAW-IQEGYMLGVGTSLGTVQLWDV---SAKKKCRTMDGHDVRVGALAWNTY---IL 390
V VAW + + G + +WD + K +D H V L++N Y IL
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIW 445
++GS + D+R+ K+ ++H E+ + WSP LAS G D LN+W
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 108/239 (45%), Gaps = 39/239 (16%)
Query: 373 MDGHDVRVGALAWNTYI---LSSGSRCGNIVHHDVRS--RDHKV----ALLQNHTQEVCG 423
+ GH L+WN+ + L S S + D+ + ++ K+ A+ H+ V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 424 LKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482
+ W L S +D L IW + +++P H + H A V +++ P+S +L
Sbjct: 235 VAWHLLHESLFGSVADDQKLMIWDT---RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 483 ASGGGTADRHIYFWNVSSGAC-LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540
A+ G+AD+ + W++ + L + ++ K ++ + W S + E + A +L +W
Sbjct: 292 AT--GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW-SPHNETILASSGTDRRLNVW- 347
Query: 541 YPSLVKVAE----------------LH-GHSARVLNLAMSPDETTVL-SAGADETLRLW 581
L K+ E +H GH+A++ + + +P+E V+ S D +++W
Sbjct: 348 --DLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCA 104
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-----VCALLWNSDYKELVSA 528
+ P S N +A GG IY G S + C L D ++V++
Sbjct: 105 YAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTS 160
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G +W + + GH+ V++L+++PD +S D + +LW
Sbjct: 161 SG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT +V L +PD R SG D +W G + + H++ + AI + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFP 236
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFAQN 534
+ N A+G + D +++ + L + + +C + S K L+ A G+
Sbjct: 237 -NGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDF 292
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + L GH RV L ++ D V + D L++W
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 371 RTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428
RT+ GH ++ A+ W T +L S S+ G ++ D + +KV + + V ++P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP 107
Query: 429 DGRYLASGGNDNLLNIW 445
G Y+A GG DN+ +I+
Sbjct: 108 SGNYVACGGLDNICSIY 124
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410
G + +LWDV +T GH+ + A+ + N ++GS D+R+ D +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQE 260
Query: 411 VALLQNHTQEVCGL---KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
+ + +H +CG+ +S GR L +G +D N+W + L+ H
Sbjct: 261 L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA------GVLAGHDN 313
Query: 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
V + + + +A G+ D + WN
Sbjct: 314 RVSCLG---VTDDGMAVATGSWDSFLKIWN 340
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 338 VCSVAW-IQEGYMLGVGTSLGTVQLWDV---SAKKKCRTMDGHDVRVGALAWNTY---IL 390
V VAW + + G + +WD + K +D H V L++N Y IL
Sbjct: 232 VEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIW 445
++GS + D+R+ K+ ++H E+ + WSP LAS G D LN+W
Sbjct: 292 ATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 107/239 (44%), Gaps = 39/239 (16%)
Query: 373 MDGHDVRVGALAWNTYI---LSSGSRCGNIVHHDVRS--RDHKV----ALLQNHTQEVCG 423
+ GH L+WN+ + L S S + D+ + ++ K+ A+ H+ V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 424 LKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482
+ W L S +D L IW + +++P H + H A V +++ P+S +L
Sbjct: 235 VAWHLLHESLFGSVADDQKLXIWDT---RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFIL 291
Query: 483 ASGGGTADRHIYFWNVSSGAC-LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540
A+ G+AD+ + W++ + L + ++ K ++ + W S + E + A +L +W
Sbjct: 292 AT--GSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW-SPHNETILASSGTDRRLNVW- 347
Query: 541 YPSLVKVAE----------------LH-GHSARVLNLAMSPDETTVL-SAGADETLRLW 581
L K+ E +H GH+A++ + + +P+E V+ S D ++W
Sbjct: 348 --DLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCA 104
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-----VCALLWNSDYKELVSA 528
+ P S N +A GG IY G S + C L D ++V++
Sbjct: 105 YAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTS 160
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G +W + + GH+ V++L+++PD +S D + +LW
Sbjct: 161 SG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT +V L +PD R SG D +W G + + H++ + AI + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFP 236
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFAQN 534
+ N A+G A ++ ++ + L + + +C + S K L+ A G+
Sbjct: 237 -NGNAFATGSDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDF 292
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + L GH RV L ++ D V + D L++W
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 371 RTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428
RT+ GH ++ A+ W T +L S S+ G ++ D + +KV + + V ++P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP 107
Query: 429 DGRYLASGGNDNLLNIW 445
G Y+A GG DN+ +I+
Sbjct: 108 SGNYVACGGLDNICSIY 124
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410
G + +LWDV +T GH+ + A+ + N ++GS D+R+ D +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQE 260
Query: 411 VALLQNHTQEVCGL---KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
+ + +H +CG+ +S GR L +G +D N+W + L+ H
Sbjct: 261 L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA------GVLAGHDN 313
Query: 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
V + + + +A G+ D + WN
Sbjct: 314 RVSCLG---VTDDGMAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCA 115
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-----VCALLWNSDYKELVSA 528
+ P S N +A GG IY G S + C L D ++V++
Sbjct: 116 YAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTS 171
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G +W + + GH+ V++L+++PD +S D + +LW
Sbjct: 172 SG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG--QHTFSTQPIHSLSRHQAAVKAIAW 474
HT +V L +PD R SG D +W G + TF+ H++ + AI +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--------HESDINAICF 245
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFA 532
P + N A+G + D +++ + L + + +C + S K L+ A G+
Sbjct: 246 FP-NGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYD 301
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + L GH RV L ++ D V + D L++W
Sbjct: 302 DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 371 RTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428
RT+ GH ++ A+ W T +L S S+ G ++ D + +KV + + V ++P
Sbjct: 60 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP 118
Query: 429 DGRYLASGGNDNLLNIW 445
G Y+A GG DN+ +I+
Sbjct: 119 SGNYVACGGLDNICSIY 135
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410
G + +LWDV +T GH+ + A+ + N ++GS D+R+ D +
Sbjct: 213 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQE 271
Query: 411 VALLQNHTQEVCGL---KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
+ + +H +CG+ +S GR L +G +D N+W + L+ H
Sbjct: 272 L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA------GVLAGHDN 324
Query: 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
V + + + +A G+ D + WN
Sbjct: 325 RVSCLG---VTDDGMAVATGSWDSFLKIWN 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCA 104
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-----VCALLWNSDYKELVSA 528
+ P S N +A GG IY G S + C L D ++V++
Sbjct: 105 YAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTS 160
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G +W + + GH+ V++L+++PD +S D + +LW
Sbjct: 161 SG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT +V L +PD R SG D +W G + + H++ + AI + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFP 236
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFAQN 534
+ N A+G + D +++ + L + + +C + S K L+ A G+
Sbjct: 237 -NGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDF 292
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + L GH RV L ++ D V + D L++W
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 371 RTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428
RT+ GH ++ A+ W T +L S S+ G ++ D + +KV + + V ++P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP 107
Query: 429 DGRYLASGGNDNLLNIW 445
G Y+A GG DN+ +I+
Sbjct: 108 SGNYVACGGLDNICSIY 124
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410
G + +LWDV +T GH+ + A+ + N ++GS D+R+ D +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQE 260
Query: 411 VALLQNHTQEVCGL---KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
+ + +H +CG+ +S GR L +G +D N+W + L+ H
Sbjct: 261 L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA------GVLAGHDN 313
Query: 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
V + + + +A G+ D + WN
Sbjct: 314 RVSCLG---VTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 17/173 (9%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H ++ + W D R L S D L IW +++T +H++ + V A
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD------SYTTNKVHAIPLRSSWVMTCA 104
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ-----VCALLWNSDYKELVSA 528
+ P S N +A GG IY G S + C L D ++V++
Sbjct: 105 YAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTS 160
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G +W + + GH+ V++L+++PD +S D + +LW
Sbjct: 161 SG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT +V L +PD R SG D +W G + + H++ + AI + P
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR------QTFTGHESDINAICFFP 236
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK--ELVSAHGFAQN 534
+ N A+G A ++ ++ + L + + +C + S K L+ A G+
Sbjct: 237 -NGNAFATGSDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDF 292
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + L GH RV L ++ D V + D L++W
Sbjct: 293 NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 371 RTMDGHDVRVGALAWNT--YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428
RT+ GH ++ A+ W T +L S S+ G ++ D + +KV + + V ++P
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-NKVHAIPLRSSWVMTCAYAP 107
Query: 429 DGRYLASGGNDNLLNIW 445
G Y+A GG DN+ +I+
Sbjct: 108 SGNYVACGGLDNICSIY 124
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410
G + +LWDV +T GH+ + A+ + N ++GS D+R+ D +
Sbjct: 202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA-DQE 260
Query: 411 VALLQNHTQEVCGL---KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467
+ + +H +CG+ +S GR L +G +D N+W + L+ H
Sbjct: 261 L-MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA------GVLAGHDN 313
Query: 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497
V + + + +A G+ D + WN
Sbjct: 314 RVSCLG---VTDDGMAVATGSWDSFLKIWN 340
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 16/173 (9%)
Query: 414 LQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471
H +V L +P G SGG D +W GQ + + H++ V +
Sbjct: 192 FHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ------CVQAFETHESDVNS 245
Query: 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK---ELVSA 528
+ + P S + ASG A +Y +I +K + + D+ L+ A
Sbjct: 246 VRYYP-SGDAFASGSDDATCRLYDLRADREV---AIYSKESIIFGASSVDFSLSGRLLFA 301
Query: 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
G+ + +W +V+ L GH RV L +SPD T S D TLR+W
Sbjct: 302 -GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 18/176 (10%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H +V + W D R + S D + +W +F+T H+++ V A A
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD------SFTTNKEHAVTMPCTWVMACA 113
Query: 474 WCPWSPNVLASGGGTADRHIY------FWNVSSGACLDSIDTKSQVCALLWNSDYKELVS 527
+ P S +A GG +Y N+++ ++ T NSD + L +
Sbjct: 114 YAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 528 AHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET--TVLSAGADETLRLW 581
+ +W S + HGH A VL L ++P ET T +S G D+ +W
Sbjct: 173 S---GDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 320 IQDNRAIDHLMDLEGNE-NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV 378
+ D R+ + E +E +V SV + G G+ T +L+D+ A ++ +
Sbjct: 224 VWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESI 283
Query: 379 RVGA----LAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434
GA + + +L +G I DV + +V++L H V L+ SPDG
Sbjct: 284 IFGASSVDFSLSGRLLFAGYNDYTINVWDVL-KGSRVSILFGHENRVSTLRVSPDGTAFC 342
Query: 435 SGGNDNLLNIWS 446
SG D+ L +W+
Sbjct: 343 SGSWDHTLRVWA 354
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 28/184 (15%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
LQ H+ +V L W+P+ ++ S D L +W+ + Q T H++ H V
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT------HAIKLHCPWVME-- 113
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV----------CALLWNSDYK 523
C ++PN + G D +N+SS A D S+V C + + + +
Sbjct: 114 -CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 524 ELVSAHGFAQNQLIIWKYPSLVKVAEL-----HGHSARVLNLAM-SPDETTVLSAGADET 577
+ G ++W + +++ GH+A VL+L++ S + +S D T
Sbjct: 173 LIT---GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTT 229
Query: 578 LRLW 581
+RLW
Sbjct: 230 VRLW 233
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 118/336 (35%), Gaps = 81/336 (24%)
Query: 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQE--------------LTSKCIQDNRAID 327
+++ + G + +WN + + I P V E L S C N +
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN--LS 138
Query: 328 HLMDLEGNENVCSVAWIQEGYM------------LGVGTSLGTVQLWDVSAKKKCRTM-- 373
D +GN V V +GY L G+ T LWDV+ ++
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 374 ---DGHDVRVGALAWNTY---ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427
GH V +L+ N+ + SGS + D+R V H ++ +K+
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF 258
Query: 428 PDGRYLASGGNDNLLNIWSGVPGQ--HTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485
PDG+ +G +D ++ G ++ +P R+ + P +V S
Sbjct: 259 PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP----DRNDNEL------PIVTSVAFSI 308
Query: 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545
G + F S+G C +W++ E+V G QN
Sbjct: 309 SG----RLLFAGYSNGDC------------YVWDTLLAEMVLNLGTLQNS---------- 342
Query: 546 KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
H R+ L +S D + + + D+ L++W
Sbjct: 343 -------HEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 526 VSAHGFAQNQLIIWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
V + AQ + + P+ LV L GHS +V +L +P++ ++SA D L +W
Sbjct: 37 VEKYSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 323 NRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC----RTMDGHD- 377
+RA+ EG+ N SV + +G G G+ GT +L+D+ + R D +D
Sbjct: 239 SRAVRTYHGHEGDIN--SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296
Query: 378 ----VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL--LQN-HTQEVCGLKWSPDG 430
V A + + +L +G G+ D + + L LQN H + L S DG
Sbjct: 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDG 356
Query: 431 RYLASGGNDNLLNIWS 446
L +G D L IW+
Sbjct: 357 SALCTGSWDKNLKIWA 372
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 113/273 (41%), Gaps = 70/273 (25%)
Query: 329 LMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT--MDGHDVRVGALAWN 386
L+ L G++ G +L G++ TV++WD+ KK C T +GH+ V
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI--KKGCCTHVFEGHNSTV------ 206
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW- 445
RC +IV + + +Y+ +G DN L++W
Sbjct: 207 --------RCLDIVEY-------------------------KNIKYIVTGSRDNTLHVWK 233
Query: 446 ----SGVPGQ----------HTFSTQP--IHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489
S VP HT P + L H A+V+ ++ N++ S G+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVS--GSY 288
Query: 490 DRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548
D + W+V+ CL + + ++ + +++ + K +SA + IW + +
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMY 346
Query: 549 ELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L GH+A V L +S + ++SA AD ++R W
Sbjct: 347 TLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 358 TVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417
T+++WD+ + T+ GH VG L + L S + G+I D K + +
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQ 451
+ S + + G++N NI++ G+
Sbjct: 393 LSAITTFYVSDN---ILVSGSENQFNIYNLRSGK 423
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 112/273 (41%), Gaps = 70/273 (25%)
Query: 329 LMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT--MDGHDVRVGALAWN 386
L+ L G++ G +L G++ TV++WD+ KK C T +GH+ V
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDI--KKGCCTHVFEGHNSTV------ 206
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIW- 445
RC +IV + + +Y+ +G DN L++W
Sbjct: 207 --------RCLDIVEY-------------------------KNIKYIVTGSRDNTLHVWK 233
Query: 446 ----SGVPGQ----------HTFSTQP--IHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489
S VP HT P + L H A+V+ ++ N++ S G+
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS---GHGNIVVS--GSY 288
Query: 490 DRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548
D + W+V+ CL + + ++ + +++ + K +SA + IW +
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS--XDTTIRIWDLENGELXY 346
Query: 549 ELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L GH+A V L +S + ++SA AD ++R W
Sbjct: 347 TLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H+ V + S +G + S D+ L +W+ GQ + H V ++A
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYK------FLGHTKDVLSVA 116
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ---VCALLWNSDYKELVSAHG 530
+ P + +++ G D + WNV G C+ ++ + V + ++ V G
Sbjct: 117 FSPDNRQIVSGG---RDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 531 FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
N + +W + V +L GH+ V ++ +SPD + S+ D RLW
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 329 LMDLEGNEN-VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWN 386
+ DL+G+ N V SV +G + G +LWD++ + M G + + N
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPN 248
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNH------TQEVCGLKWSPDGRYLASGGNDN 440
Y + + + G I D+ ++D V L H E + WS DG L SG DN
Sbjct: 249 RYWMCAATEKG-IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN 307
Query: 441 LLNIW 445
++ +W
Sbjct: 308 VIRVW 312
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 91/230 (39%), Gaps = 38/230 (16%)
Query: 372 TMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVALLQ----NHTQEVCGL 424
TM H V A+A N I+ S SR +I+ + D + Q H+ V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
S DG++ SG D L +W G T H V ++A+ + ++++
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVST------RRFVGHTKDVLSVAFSLDNRQIVSA 490
Query: 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL-------- 536
+ DR I WN + G C +I + +++ VS F+ N L
Sbjct: 491 ---SRDRTIKLWN-TLGECKYTISEGGE--------GHRDWVSCVRFSPNTLQPTIVSAS 538
Query: 537 -----IIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+W + + L GH+ V +A+SPD + S G D + LW
Sbjct: 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395
V +VA +G + G G V LWD++ KK +++ + V + AL + N Y L + +
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCAATE 622
Query: 396 CG---------NIVHH---DVRSRDHKV-----ALLQNHTQEVCGLKWSPDGRYLASGGN 438
G +IV D+++ K A + L WS DG L SG
Sbjct: 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT 682
Query: 439 DNLLNIW 445
D ++ +W
Sbjct: 683 DGVIRVW 689
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQP---IHSL 462
L HT V + SPDG ASGG D ++ +W G+ +S + IH+L
Sbjct: 557 LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 65/264 (24%)
Query: 357 GTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVAL 413
G ++LWD++A R GH V ++A+ N I+S+ SRD + L
Sbjct: 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSA-------------SRDRTIKL 498
Query: 414 L--------------QNHTQEVCGLKWSPDGRY--LASGGNDNLLNIWSGVPGQHTFSTQ 457
+ H V +++SP+ + S D + +W+ S
Sbjct: 499 WNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN-------LSNC 551
Query: 458 PIHS-LSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516
+ S L+ H V +A P ++ ASGG D + W+++ G L S++ S + AL
Sbjct: 552 KLRSTLAGHTGYVSTVAVSP-DGSLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIHAL 608
Query: 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-------------GHSA---RVL-- 558
++ + L +A ++ + IW S V +L G +A +V+
Sbjct: 609 CFSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC 665
Query: 559 -NLAMSPDETTVLSAGADETLRLW 581
+L S D +T+ S D +R+W
Sbjct: 666 TSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 357 GTVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
G V+LW+ + + R++ + VR G + GS I + + + KV
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDF 93
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
+ H + + P Y+ SG +D + +W+ ++ ++ + + H+ V +A+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALE--QTFEGHEHFVMCVAF 148
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--A 532
P P+ ASG DR + W++ ++ T + DY L A
Sbjct: 149 NPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITA 204
Query: 533 QNQLII--WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ L I W Y + VA L GH + V P ++S D TL++W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWN 519
+ S VK I + P P VL + + WN + + SI T++ V A +
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTT---LYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
+ ++ G ++ ++ Y + KV + H + ++A+ P + VLS D T++
Sbjct: 65 ARKNWIIV--GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 580 LW 581
LW
Sbjct: 123 LW 124
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 357 GTVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
G V+LW+ + + R++ + VR G + GS I + + + KV
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDF 93
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
+ H + + P Y+ SG +D + +W+ ++ ++ + + H+ V +A+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALE--QTFEGHEHFVMCVAF 148
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--A 532
P P+ ASG DR + W++ ++ T + DY L A
Sbjct: 149 NPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITA 204
Query: 533 QNQLII--WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ L I W Y + VA L GH + V P ++S D TL++W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 6/122 (4%)
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWN 519
+ S VK I + P P VL + + WN + + SI T++ V A +
Sbjct: 8 TFSNRSDRVKGIDFHPTEPWVLTT---LYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
+ ++ G ++ ++ Y + KV + H + ++A+ P + VLS D T++
Sbjct: 65 ARKNWIIV--GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 580 LW 581
LW
Sbjct: 123 LW 124
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDKKASMIIS- 124
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLI-IW 539
G+ D+ I W + G CL ++ D SQV + + V+ ++++ W
Sbjct: 125 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH++ + L SPD T + SAG D + LW
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAA 254
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 255 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 442 LNIW 445
+ +W
Sbjct: 310 IRVW 313
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 358 TVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415
T++LWDV+ + + GH DV + ++ SGSR I ++ + +A L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLL 145
Query: 416 NHTQEVCGLKWSP------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
H V ++ P D + S GND ++ W+ + F + H + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----LNQFQIEA--DFIGHNSNI 199
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529
+ P ++AS G D I WN+++ + ++ + +V +L ++ + L +A
Sbjct: 200 NTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 530 G-----FAQN-QLIIW----KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
F+ + Q ++ ++ K AE H ++LA S D T+ + D +R
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA-----VSLAWSADGQTLFAGYTDNVIR 311
Query: 580 LW 581
+W
Sbjct: 312 VW 313
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDKKASMIIS- 124
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLI-IW 539
G+ D+ I W + G CL ++ D SQV + + V+ ++++ W
Sbjct: 125 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH++ + L SPD T + SAG D + LW
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAA 254
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 255 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 442 LNIW 445
+ +W
Sbjct: 310 IRVW 313
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 358 TVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415
T++LWDV+ + + GH DV + ++ SGSR I ++ + +A L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLL 145
Query: 416 NHTQEVCGLKWSP------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
H V ++ P D + S GND ++ W+ + F + H + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----LNQFQIEA--DFIGHNSNI 199
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529
+ P ++AS G D I WN+++ + ++ + +V +L ++ + L +A
Sbjct: 200 NTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 530 G-----FAQN-QLIIW----KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
F+ + Q ++ ++ K AE H ++LA S D T+ + D +R
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA-----VSLAWSADGQTLFAGYTDNVIR 311
Query: 580 LW 581
+W
Sbjct: 312 VW 313
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 26/224 (11%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVXSVDIDKKASXIIS- 124
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCAL---LWNSDYKELVSAHGFAQNQLI 537
G+ D+ I W + G CL ++ D SQV + + D ++SA +
Sbjct: 125 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGN--DKXVK 179
Query: 538 IWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
W A+ GH++ + L SPD T + SAG D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLAA 254
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 255 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 442 LNIW 445
+ +W
Sbjct: 310 IRVW 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDKKASMIIS- 124
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLI-IW 539
G+ D+ I W + G CL ++ D SQV + + V+ ++++ W
Sbjct: 125 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH++ + L SPD T + SAG D + LW
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAA 254
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 255 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 442 LNIW 445
+ +W
Sbjct: 310 IRVW 313
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 358 TVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415
T++LWDV+ + + GH DV + ++ SGSR I ++ + +A L
Sbjct: 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLL 145
Query: 416 NHTQEVCGLKWSP------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
H V ++ P D + S GND ++ W+ + F + H + +
Sbjct: 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----LNQFQIEA--DFIGHNSNI 199
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529
+ P ++AS G D I WN+++ + ++ + +V +L ++ + L +A
Sbjct: 200 NTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 256
Query: 530 G-----FAQN-QLIIW----KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
F+ + Q ++ ++ K AE H ++LA S D T+ + D +R
Sbjct: 257 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA-----VSLAWSADGQTLFAGYTDNVIR 311
Query: 580 LW 581
+W
Sbjct: 312 VW 313
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDKKASMIIS- 118
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLI-IW 539
G+ D+ I W + G CL ++ D SQV + + V+ ++++ W
Sbjct: 119 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 175
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH++ + L SPD T + SAG D + LW
Sbjct: 176 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 190 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAA 248
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 249 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNV 303
Query: 442 LNIW 445
+ +W
Sbjct: 304 IRVW 307
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 358 TVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415
T++LWDV+ + + GH DV + ++ SGSR I ++ + +A L
Sbjct: 82 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLL 139
Query: 416 NHTQEVCGLKWSP------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
H V ++ P D + S GND ++ W+ + F + H + +
Sbjct: 140 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----LNQFQIEA--DFIGHNSNI 193
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529
+ P ++AS G D I WN+++ + ++ + +V +L ++ + L +A
Sbjct: 194 NTLTASP-DGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT 250
Query: 530 G-----FAQN-QLIIW----KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579
F+ + Q ++ ++ K AE H ++LA S D T+ + D +R
Sbjct: 251 ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA-----VSLAWSADGQTLFAGYTDNVIR 305
Query: 580 LW 581
+W
Sbjct: 306 VW 307
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 22/222 (9%)
Query: 372 TMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVAL----LQNHTQEVCGL 424
T++GH+ V +LA + +L S SR ++ + D K + + H+ V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484
+ DG Y S D L +W G+ H++ V ++ + +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE------TYQRFVGHKSDVMSVDIDKKASMIIS- 124
Query: 485 GGGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLI-IW 539
G+ D+ I W + G CL ++ D SQV + + V+ ++++ W
Sbjct: 125 --GSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW 181
Query: 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
A+ GH++ + L SPD T + SAG D + LW
Sbjct: 182 NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSS 392
N N+ ++ +G ++ G + LW+++AKK T+ D V +LA+ N Y L++
Sbjct: 196 NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLAA 254
Query: 393 GSRCGNIVHHDVRSRDHKVALLQNHTQEVCG-----------LKWSPDGRYLASGGNDNL 441
+ G V S D + L+ + E G L WS DG+ L +G DN+
Sbjct: 255 ATATG----IKVFSLDPQY-LVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNV 309
Query: 442 LNIW 445
+ +W
Sbjct: 310 IRVW 313
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 12/144 (8%)
Query: 314 ELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLW--DVSAKKKCR 371
+L S D ID L + + + SVAW +L G+ TV +W + SA +
Sbjct: 37 KLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE 96
Query: 372 -----TMDGHDVRVGALAW--NTYILSSGSRCGN--IVHHDVRSRDHK-VALLQNHTQEV 421
++GH+ V +AW + Y L++ SR + I D +++ +++LQ H+Q+V
Sbjct: 97 MDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDV 156
Query: 422 CGLKWSPDGRYLASGGNDNLLNIW 445
+ W P LAS D+ + IW
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW 180
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470
+A+++ H EV G+ WS DG YLA+ D + IW + + I L H VK
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVK 157
Query: 471 AIAWCPWSPNVLAS 484
+ W P S +LAS
Sbjct: 158 HVIWHP-SEALLAS 170
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 72/197 (36%), Gaps = 46/197 (23%)
Query: 389 ILSSGSRCGNIVHHDVRSRDHKVALLQN---HTQEVCGLKWSPDGRYLASGGNDNLLNIW 445
IL++GS I V+ D + + + H + + + W P LA+G D+ ++IW
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85
Query: 446 SGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504
+ TF + + H+ VK +AW S + + D+ ++ W
Sbjct: 86 AKEESADRTFEMDLLAIIEGHENEVKGVAW---SNDGYYLATCSRDKSVWIWETDE---- 138
Query: 505 DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564
+ + E +S L HS V ++ P
Sbjct: 139 --------------SGEEYECISV---------------------LQEHSQDVKHVIWHP 163
Query: 565 DETTVLSAGADETLRLW 581
E + S+ D+T+R+W
Sbjct: 164 SEALLASSSYDDTVRIW 180
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 357 GTVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
G V+LW+ + + R++ + VR G + GS I + + + KV
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDF 93
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
+ H + + P Y+ SG +D + +W+ ++ ++ + + H+ V +A+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALE--QTFEGHEHFVMCVAF 148
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--A 532
P P+ ASG DR + W++ ++ T + DY L A
Sbjct: 149 NPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITA 204
Query: 533 QNQLII--WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ L I W Y + VA L GH + V P ++S D TL++W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 25/238 (10%)
Query: 357 GTVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
GT++LWD++ R GH DV A + + + SGSR I +
Sbjct: 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 167
Query: 415 QNHTQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
++H++ V +++SP+ + S G D L+ +W+ T I H + +
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN--LANCKLKTNHIG----HTGYLNTV 221
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
P ++ ASGG D W+++ G L ++D + AL ++ + L +A G
Sbjct: 222 TVSP-DGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG-- 276
Query: 533 QNQLIIWKYPSLVKVAEL---------HGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + V EL + +LA S D T+ + D +R+W
Sbjct: 277 -PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H+ V + S DG++ SG D L +W G T H V ++A
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVA 135
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
+ + +++ G+ D+ I WN + G C ++ +S + E VS F+
Sbjct: 136 FSSDNRQIVS---GSRDKTIKLWN-TLGVCKYTVQDES----------HSEWVSCVRFSP 181
Query: 534 NQ----LIIWKYPSLVKVAELH---------GHSARVLNLAMSPDETTVLSAGADETLRL 580
N ++ + LVKV L GH+ + + +SPD + S G D L
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241
Query: 581 W 581
W
Sbjct: 242 W 242
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ------VC 514
+L H V IA P P+++ S + D+ I W ++ I ++ V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSA--SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 90
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574
++ +SD + +S G L +W + GH+ VL++A S D ++S
Sbjct: 91 DVVISSDGQFALS--GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 575 DETLRLW 581
D+T++LW
Sbjct: 149 DKTIKLW 155
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 23/134 (17%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT + + SPDG ASGG D +W G+H ++ + A+ + P
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-------GDIINALCFSP 266
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDS-----IDTKS-----QVCALLWNSDYKELV 526
+ A+ G + I W++ +D I T S Q +L W++D + L
Sbjct: 267 NRYWLCAATGPS----IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 527 SAHGFAQNQLIIWK 540
+ G+ N + +W+
Sbjct: 323 A--GYTDNLVRVWQ 334
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 28/158 (17%)
Query: 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP----NVLASG 485
G + SG +DN L +WS V G + + +L H V WS N++ S
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTG------KCLRTLVGHTGGV-------WSSQMRDNIIIS- 174
Query: 486 GGTADRHIYFWNVSSGACLDSI--DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543
G+ DR + WN +G C+ ++ T + C L K +VS G L +W +
Sbjct: 175 -GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL---HEKRVVS--GSRDATLRVWDIET 228
Query: 544 LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ L GH A V + D V+S D +++W
Sbjct: 229 GQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVW 264
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 19/229 (8%)
Query: 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412
G+ T+++W K RT+ GH V + I+ SGS + + + + +
Sbjct: 135 GSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGE-CIH 193
Query: 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
L HT V + + + SG D L +W G Q +H L H AAV+ +
Sbjct: 194 TLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCV 245
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
+ + SG D + W+ + CL ++ + +++ + + G
Sbjct: 246 ---QYDGRRVVSGA--YDFMVKVWDPETETCLHTLQGHTN---RVYSLQFDGIHVVSGSL 297
Query: 533 QNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ +W + + L GH + L M + ++S AD T+++W
Sbjct: 298 DTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIW 344
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 11/151 (7%)
Query: 359 VQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418
V++WD + T+ GH RV +L ++ + SGS +I DV + + + L H
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET-GNCIHTLTGHQ 319
Query: 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478
G++ + L SG D+ + IW GQ Q + ++HQ+AV + ++
Sbjct: 320 SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ---CLQTLQGPNKHQSAVTCL---QFN 371
Query: 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDT 509
N + + + D + W++ +G + ++ T
Sbjct: 372 KNFVIT--SSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 25/238 (10%)
Query: 357 GTVQLWDVSAKKKCRTMDGH--DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
GT++LWD++ R GH DV A + + + SGSR I +
Sbjct: 85 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD 144
Query: 415 QNHTQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472
++H++ V +++SP+ + S G D L+ +W+ T I H + +
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN--LANCKLKTNHIG----HTGYLNTV 198
Query: 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA 532
P ++ ASGG D W+++ G L ++D + AL ++ + L +A G
Sbjct: 199 TVSP-DGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATG-- 253
Query: 533 QNQLIIWKYPSLVKVAEL---------HGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ IW + V EL + +LA S D T+ + D +R+W
Sbjct: 254 -PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 33/181 (18%)
Query: 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473
L+ H+ V + S DG++ SG D L +W G T H V ++A
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT------RRFVGHTKDVLSVA 112
Query: 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533
+ + +++ G+ D+ I WN + G C ++ +S + E VS F+
Sbjct: 113 FSSDNRQIVS---GSRDKTIKLWN-TLGVCKYTVQDES----------HSEWVSCVRFSP 158
Query: 534 NQ----LIIWKYPSLVKVAELH---------GHSARVLNLAMSPDETTVLSAGADETLRL 580
N ++ + LVKV L GH+ + + +SPD + S G D L
Sbjct: 159 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 218
Query: 581 W 581
W
Sbjct: 219 W 219
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQ------VC 514
+L H V IA P P+++ S + D+ I W ++ I ++ V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSA--SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS 67
Query: 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574
++ +SD + +S G L +W + GH+ VL++A S D ++S
Sbjct: 68 DVVISSDGQFALS--GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 575 DETLRLW 581
D+T++LW
Sbjct: 126 DKTIKLW 132
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 23/134 (17%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
HT + + SPDG ASGG D +W G+H ++ + A+ + P
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-------GDIINALCFSP 243
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDS-----IDTKS-----QVCALLWNSDYKELV 526
+ A+ G + I W++ +D I T S Q +L W++D + L
Sbjct: 244 NRYWLCAATGPS----IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 527 SAHGFAQNQLIIWK 540
+ G+ N + +W+
Sbjct: 300 A--GYTDNLVRVWQ 311
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%)
Query: 357 GTVQLWDVSAKKKCRTMDGHD--VRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALL 414
G V++W+ + + R++ + VR G + GS I + + + KV
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-KVVDF 93
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
+ H + + P Y+ SG +D + +W+ ++ ++ + + H+ V +A+
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALE--QTFEGHEHFVMCVAF 148
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--A 532
P P+ ASG DR + W++ ++ T + DY L A
Sbjct: 149 NPKDPSTFASG--CLDRTVKVWSLGQSTPNFTLTTGQERGVNY--VDYYPLPDKPYMITA 204
Query: 533 QNQLII--WKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ L I W Y + VA L GH + V P ++S D TL++W
Sbjct: 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 18/124 (14%)
Query: 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVR 405
++ VGT VQL D+ + + GH + A++W+ YIL++ S + DVR
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 406 SRDHKVALLQNHTQE---------------VCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450
+ L H + V GL ++ DG +L + G DN + +W+ G
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG 277
Query: 451 QHTF 454
++T
Sbjct: 278 ENTL 281
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 429 DGRYLASGGNDNLLNIW--SGVPGQHTFSTQPIHSLSR-----HQAAVKAIAWCPWSPNV 481
+GRY+ SGG+D ++ ++ Q ++ + + S+ R H+ +V+ + W P +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA-------QN 534
S + D+ + W+ ++ D + + V ++ + + H +
Sbjct: 115 FTS--SSFDKTLKVWDTNTLQTADVFNFEETV----YSHHMSPVSTKHCLVAVGTRGPKV 168
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL-SAGADETLRLW 581
QL K S + L GH +L ++ SP +L +A AD ++LW
Sbjct: 169 QLCDLKSGSCSHI--LQGHRQEILAVSWSPRYDYILATASADSRVKLW 214
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 9/96 (9%)
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
Q H E+ LK+ P G L S D L IWS G + +L H+A V IA
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP------RTLIGHRATVTDIAI 186
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK 510
NVL++ + D I W +G + + + K
Sbjct: 187 IDRGRNVLSA---SLDGTIRLWECGTGTTIHTFNRK 219
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
QL IW L GH A V ++A+ VLSA D T+RLW
Sbjct: 159 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
Q H E+ LK+ P G L S D L IWS G + P +L H+A V IA
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNP-RTLIGHRATVTDIAI 189
Query: 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK 510
NVL++ + D I W +G + + + K
Sbjct: 190 IDRGRNVLSA---SLDGTIRLWECGTGTTIHTFNRK 222
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 535 QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
QL IW L GH A V ++A+ VLSA D T+RLW
Sbjct: 162 QLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 536 LIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L +W + GH + V ++A SPD +LSAGA+ ++LW
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 31/158 (19%)
Query: 358 TVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGS----RCGNIVHHDVRSRDHK 410
T++LWD+ + GH V ++A+ N ILS+G+ + NI+ S K
Sbjct: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK 158
Query: 411 VALLQNHTQEVCGLKWSPDGR----------YLASGGNDNLLNIWSGVPGQHTFSTQPIH 460
+NH+ V +++SP + Y AS G D L +W+ + Q +
Sbjct: 159 ----ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-------NFQIRY 207
Query: 461 SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498
+ H++ V ++ P + +A+GG D+ + W++
Sbjct: 208 TFKAHESNVNHLSISP-NGKYIATGG--KDKKLLIWDI 242
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
L GH+ V +LA+S + +S+ D+TLRLW
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 41/165 (24%)
Query: 417 HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
H EV + +SPD R + S G + + +W+ + G+ FS+ + H V + + P
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWN-ILGECKFSSAEKEN---HSDWVSCVRYSP 172
Query: 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL 536
++ S YF +V L +WN++++ +
Sbjct: 173 ----IMKSANKVQPFAPYFASVGWDGRLK-----------VWNTNFQIRYT--------- 208
Query: 537 IIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
H + V +L++SP+ + + G D+ L +W
Sbjct: 209 -------------FKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 72/180 (40%), Gaps = 29/180 (16%)
Query: 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477
T +V L WS DG + +G + L +W+ + ++ L+ H+A + ++ W
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNK-------TGALLNVLNFHRAPIVSVKWNKD 160
Query: 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTK----SQVCA------------LLWNSD 521
++++ + WNV SG + + K S + A + W D
Sbjct: 161 GTHIISM---DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD 217
Query: 522 YKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
K ++ + + +++ +L GH + L + +LSA D TLR+W
Sbjct: 218 DKFVIPG---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 64/164 (39%), Gaps = 18/164 (10%)
Query: 347 GYMLGVGTS----LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSRCG 397
G G GTS G+ + + K D +G L+++ L +GS
Sbjct: 5 GTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWAN 64
Query: 398 NIVHHDVRSRDHKVALLQN-HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST 456
++ +V+ + Q HT V + WS DG + + D +W S+
Sbjct: 65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD-------LSS 117
Query: 457 QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500
+++H A VK I W +PN G+ D+ + FW+ S
Sbjct: 118 NQAIQIAQHDAPVKTIHWIK-APNYSCVMTGSWDKTLKFWDTRS 160
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483
L WS + + +A ++ L ++S + ++ + S H ++VK + + NVLA
Sbjct: 73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINS--MARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 484 SGGGTADRHIYFWN-------------VSSGACLDSIDTKSQVCALLWNSDYKELVSAHG 530
SGG + I+ W+ ++ G + S+D +V +L WN + ++ G
Sbjct: 131 SGGNNGE--IFIWDMNKCTESPSNYTPLTPGQSMSSVD---EVISLAWNQSLAHVFASAG 185
Query: 531 FAQNQLIIWKYPSLVKVAEL 550
+ N IW + +V L
Sbjct: 186 -SSNFASIWDLKAKKEVIHL 204
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 113/292 (38%), Gaps = 68/292 (23%)
Query: 255 LTADRILDAPEIQNDYYLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQ---- 308
L AD +Q D N +DWSH N ++A AL GS+ L++ +N+ + +
Sbjct: 53 LAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH 112
Query: 309 SPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK 368
S V+ + QDN +L G + G + +WD++
Sbjct: 113 SSSVKTVKFNAKQDN-------------------------VLASGGNNGEIFIWDMN--- 144
Query: 369 KC-------------RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVA 412
KC ++M D V +LAWN ++ +S D++++ +
Sbjct: 145 KCTESPSNYTPLTPGQSMSSVD-EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIH 203
Query: 413 LLQNH-----TQEVCGLKWSPDG--RYLASGGNDN--LLNIWSGVPGQHTFSTQPIHSLS 463
L Q++ ++W P R + G+DN + IW + P+ +L+
Sbjct: 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW-----DLRNANTPLQTLN 258
Query: 464 R-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVC 514
+ HQ + ++ WC ++L S G D + WN S L + C
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQLSQFPARGNWC 308
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 118/293 (40%), Gaps = 40/293 (13%)
Query: 325 AIDHLMDLEGNENVCSVAWIQEGYMLGV-GTSLGTV----------QLWDVSAKKKCRTM 373
A+ ++ L + AW + L V GT GTV +LW + A + +
Sbjct: 2 AMGSMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI 61
Query: 374 DGH--DVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV---ALLQNHTQEVCGLKW 426
D + L W N I++ G++ + ++ + A NH+ V +K+
Sbjct: 62 ASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKF 121
Query: 427 -SPDGRYLASGGNDNLLNIW-----SGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480
+ LASGGN+ + IW + P +T T P S+S + ++AW +
Sbjct: 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLT-PGQSMSSVDEVI-SLAWNQSLAH 179
Query: 481 VLASGGGTADRHIYFWNVSSGACLDSID-------TKSQVCALLWNSDYKELVSAHGFAQ 533
V AS G + I W++ + + + K Q+ + W+ V+ +
Sbjct: 180 VFASAGSSNFASI--WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237
Query: 534 NQ--LIIWKYPSLVKVAEL--HGHSARVLNLAMS-PDETTVLSAGADETLRLW 581
N ++IW + + GH +L+L DE +LS+G D T+ LW
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLW 290
>pdb|3BPN|C Chain C, Crystal Structure Of The Il4-Il4r-Il13ra Ternary Complex
pdb|3BPO|C Chain C, Crystal Structure Of The Il13-Il4r-Il13ra Ternary Complex
Length = 314
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 61/126 (48%), Gaps = 15/126 (11%)
Query: 196 HQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLP---HLMAIKILSNTSKTPMGSKPTSRY 252
H++++ + C+N+F E + + L K+K H + I + N K KP+
Sbjct: 136 HRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKI----KPSFNI 191
Query: 253 IPLTADRILDAPEIQNDYYLN---LIDWSH-FNVLAVALGGSIYLWNGESDSNSKYII-- 306
+PLT+ D P I+N + N + W + N ++ L + + N ++++++ + +
Sbjct: 192 VPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQE 251
Query: 307 --CQSP 310
C++P
Sbjct: 252 AKCENP 257
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR----------YLASG 436
TYI ++G G I+ +D++SR+ K + T ++ + W P + +A+G
Sbjct: 501 TYI-AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
D + I+S + I +L+ H+ V + W +P+ L S G AD I W
Sbjct: 560 SLDTNIFIYS-----VKRPMKIIKALNAHKDGVNNLLW--ETPSTLVSSG--ADACIKRW 610
Query: 497 NV 498
NV
Sbjct: 611 NV 612
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 34/152 (22%)
Query: 316 TSKCIQ----DNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR 371
TSKC+Q D + + GN+ V VA G ++ + GT+ +++ + +
Sbjct: 283 TSKCVQKWTLDKQQL-------GNQQVGVVA-TGNGRIISLSLD-GTLNFYELGHDEVLK 333
Query: 372 TMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRS--RDHK---VALLQNHTQEVCGLKW 426
T+ GH+ + AL N I SGS G I+ S +DH V+L + QE + W
Sbjct: 334 TISGHNKGITALTVNPLI--SGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 391
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQP 458
D+ L + +G+ +H F +QP
Sbjct: 392 ------------DDTLKV-NGIT-KHEFGSQP 409
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
Query: 387 TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR----------YLASG 436
TYI ++G G I+ +D++SR+ K + T ++ + W P + +A+G
Sbjct: 501 TYI-AAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496
D + I+S + I +L+ H+ V + W +P+ L S G AD I W
Sbjct: 560 SLDTNIFIYS-----VKRPXKIIKALNAHKDGVNNLLW--ETPSTLVSSG--ADACIKRW 610
Query: 497 NV 498
NV
Sbjct: 611 NV 612
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 34/152 (22%)
Query: 316 TSKCIQ----DNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR 371
TSKC+Q D + + GN+ V VA G ++ + GT+ +++ + +
Sbjct: 283 TSKCVQKWTLDKQQL-------GNQQVGVVA-TGNGRIISLSLD-GTLNFYELGHDEVLK 333
Query: 372 TMDGHDVRVGALAWNTYILSSGSRCGNIVH--HDVRSRDHK---VALLQNHTQEVCGLKW 426
T+ GH+ + AL N I SGS G I +DH V+L + QE + W
Sbjct: 334 TISGHNKGITALTVNPLI--SGSYDGRIXEWSSSSXHQDHSNLIVSLDNSKAQEYSSISW 391
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQP 458
D+ L + +G+ +H F +QP
Sbjct: 392 ------------DDTLKV-NGIT-KHEFGSQP 409
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
+V L+ H +V G+ W+PD + + G D +W+ + G+ T I ++R V
Sbjct: 44 QVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWT-LKGRTWKPTLVILRINRAARCV 102
Query: 470 KAIAWCPWSPNVLASGGGTADRHI---YF 495
+ W+PN G+ R I YF
Sbjct: 103 R------WAPNEKKFAVGSGSRVISICYF 125
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
K L H + + +K++ +G L S D+ ++W + G+ + +L H +
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER------LGTLDGHTGTI 77
Query: 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504
+I ++ + G+AD I W+VS+G C+
Sbjct: 78 WSIDVDCFTKYCVT---GSADYSIKLWDVSNGQCV 109
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469
+V L+ H +V G+ W+PD + + G D +W+ + G+ T I ++R V
Sbjct: 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT-LKGRTWKPTLVILRINRAARCV 102
Query: 470 KAIAWCPWSPNVLASGGGTADRHI---YF 495
+ W+PN G+ R I YF
Sbjct: 103 R------WAPNEKKFAVGSGSRVISICYF 125
>pdb|5PRN|A Chain A, E1m, Y96w, S119w Mutant Of Rh. Blastica Porin
Length = 289
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 487 GTADRHIYFWNVSSGACLD--SIDTKSQVCALLWNSDYKELVSAHGFAQNQLII--WKYP 542
GTA FW +G + ++DT AL W+S+ S+ G AQ+ WKY
Sbjct: 63 GTAGNAAQFWTSYNGVTVSVGNVDTAFDSVALTWDSEMGYEASSFGDAQSSFFAYNWKYD 122
Query: 543 SLVKVAELHG----HSARVLNLAMS---PDET 567
+ + +G +S +NL +S PD+T
Sbjct: 123 ASGALDNYNGIAVTYSISGVNLYLSYVDPDQT 154
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + R +GG DNL+ IW T+ + +L H V+ +AW P
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSP 214
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 20/173 (11%)
Query: 298 SDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD------LEGNENVCSVAWI-QEGYML 350
S + + Y + SP + S C N A+ L + +G+ + S I +G L
Sbjct: 139 SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198
Query: 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDV--RVGALAW--NTYILSSGSRCGNIVHHDVRS 406
G TV+ WD+ ++ R + HD ++ +L + L+ G N+ V
Sbjct: 199 WTGGLDNTVRSWDL---REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255
Query: 407 RDHKVALLQNHTQEVC--GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQ 457
D Q H E C LK++ G++ S G DNLLN W G F ++
Sbjct: 256 PDK----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 304
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Query: 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWS-GVPGQHTFSTQPIHSLSRHQAAVKAIAW 474
NH + VC + S R++ +GG + +W PG + +Q + L+R I
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQ-LDCLNRDNY----IRS 102
Query: 475 CPWSPN--VLASGGGTADRHIYFWNVSSGACLDSIDTKSQVC-ALLWNSDYKELVSAHGF 531
C P+ L GG + I+ + + + + C AL + D K S
Sbjct: 103 CKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC--C 160
Query: 532 AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581
+ + +W + V + GH+ + +S D T + + G D T+R W
Sbjct: 161 SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|3PB4|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase At Ph 6.0
pdb|3PB6|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase At Ph 6.5
pdb|3PB7|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With Pbd150
pdb|3PB8|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With
N-Acetylhistamine
pdb|3PB9|X Chain X, Crystal Structure Of The Catalytic Domain Of Human
Golgi-Resident Glutaminyl Cyclase In Complex With
1-Benzylimidazole
Length = 330
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 402 HDVRS---RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFST 456
H +RS R H++ LLQ+H QEV + G S +D++ + GVP H ST
Sbjct: 238 HRLRSIEKRLHRLNLLQSHPQEVMYFQ---PGEPFGSVEDDHIPFLRRGVPVLHLIST 292
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNL-AMSPD 565
I + VC+L +++ V G +WK SLV L H+A V + +S
Sbjct: 101 IGHQGNVCSL----SFQDGVVISGSWDKTAKVWKEGSLV--YNLQAHNASVWDAKVVSFS 154
Query: 566 ETTVLSAGADETLRLW 581
E L+A AD+T++LW
Sbjct: 155 ENKFLTASADKTIKLW 170
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + R +GG DNL+ IW T+ + +L H V+ +AW P
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSP 216
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + R +GG DNL+ IW T+ + +L H V+ +AW P
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSP 214
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + R +GG DNL+ IW T+ + +L H V+ +AW P
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSP 214
>pdb|4FIX|A Chain A, Crystal Structure Of Glft2
pdb|4FIX|B Chain B, Crystal Structure Of Glft2
pdb|4FIY|A Chain A, Crystal Structure Of Glft2 Complexed With Udp
pdb|4FIY|B Chain B, Crystal Structure Of Glft2 Complexed With Udp
Length = 657
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 247 KPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYII 306
+P S L R AP + LNL + SH +++ + SI++W + +
Sbjct: 282 EPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDF 341
Query: 307 CQSPL 311
+ PL
Sbjct: 342 AEYPL 346
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476
+ + R +GG DNL+ IW T+ + +L H V+ +AW P
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWVRDVAWSP 214
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 433 LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492
+A+GG D +L+IW G T P+ L H+A + + + P +P L + + D
Sbjct: 252 VATGGQDGMLSIWDVRQG-----TMPVSLLKAHEAEMWEVHFHPSNPEHLFT--CSEDGS 304
Query: 493 IYFWNVSS 500
++ W+ S+
Sbjct: 305 LWHWDAST 312
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D+ S C L+ +++ E + + L + + S + E HS+ V++L+ +
Sbjct: 263 DSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEF-AHSSWVMSLSFNDSGE 314
Query: 568 TVLSAGADETLRLW 581
T+ SAG D LR W
Sbjct: 315 TLCSAGWDGKLRFW 328
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 508 DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567
D+ S C L+ +++ E + + L + + S + E HS+ V++L+ +
Sbjct: 253 DSNSFGCITLYETEFGERIGS-------LSVPTHSSQASLGEF-AHSSWVMSLSFNDSGE 304
Query: 568 TVLSAGADETLRLW 581
T+ SAG D LR W
Sbjct: 305 TLCSAGWDGKLRFW 318
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,776,091
Number of Sequences: 62578
Number of extensions: 714615
Number of successful extensions: 2366
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1509
Number of HSP's gapped (non-prelim): 357
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)