Query psy4876
Match_columns 609
No_of_seqs 904 out of 3147
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:04:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4876.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4876hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gga_A P55CDC, cell division c 100.0 5.4E-65 1.9E-69 546.6 46.5 416 108-609 2-420 (420)
2 4aez_A CDC20, WD repeat-contai 100.0 1.1E-53 3.9E-58 455.5 45.5 385 104-592 1-387 (401)
3 4ggc_A P55CDC, cell division c 100.0 5E-48 1.7E-52 395.4 46.3 315 247-588 3-318 (318)
4 1vyh_C Platelet-activating fac 100.0 3.6E-41 1.2E-45 360.6 41.7 278 269-584 108-410 (410)
5 3ow8_A WD repeat-containing pr 100.0 1.6E-40 5.4E-45 343.9 41.8 278 269-583 32-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 5.4E-40 1.9E-44 342.1 45.2 274 270-582 56-340 (340)
7 4gqb_B Methylosome protein 50; 100.0 2.9E-39 9.8E-44 337.9 39.1 290 270-587 31-333 (344)
8 3frx_A Guanine nucleotide-bind 100.0 2.4E-38 8.4E-43 326.8 42.7 282 269-586 17-318 (319)
9 2pbi_B Guanine nucleotide-bind 100.0 1.9E-38 6.7E-43 332.6 42.3 276 269-582 64-354 (354)
10 2ynn_A Coatomer subunit beta'; 100.0 9.5E-38 3.2E-42 320.0 42.8 278 271-586 15-303 (304)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.2E-38 1.1E-42 329.5 39.2 286 271-590 18-340 (345)
12 3iz6_a 40S ribosomal protein R 100.0 6.6E-39 2.2E-43 339.3 33.7 281 269-587 66-377 (380)
13 4g56_B MGC81050 protein; prote 100.0 1.8E-38 6.2E-43 333.4 36.5 288 269-589 42-347 (357)
14 4ery_A WD repeat-containing pr 100.0 1.4E-36 4.9E-41 311.3 44.9 277 269-584 23-311 (312)
15 2ynn_A Coatomer subunit beta'; 100.0 4E-37 1.4E-41 315.3 39.5 252 330-591 7-265 (304)
16 1erj_A Transcriptional repress 100.0 1.2E-36 3.9E-41 323.6 42.5 297 269-586 64-390 (393)
17 2hes_X YDR267CP; beta-propelle 100.0 5.2E-37 1.8E-41 318.3 38.7 282 270-585 15-328 (330)
18 2xzm_R RACK1; ribosome, transl 100.0 1.1E-36 3.7E-41 317.4 40.7 282 270-586 22-341 (343)
19 4aow_A Guanine nucleotide-bind 100.0 4E-36 1.4E-40 309.9 43.7 285 269-587 38-339 (340)
20 3zwl_B Eukaryotic translation 100.0 8.1E-36 2.8E-40 310.2 40.5 286 269-592 32-353 (369)
21 1nr0_A Actin interacting prote 100.0 1.5E-35 5.1E-40 333.4 41.3 286 269-587 147-569 (611)
22 1vyh_C Platelet-activating fac 100.0 9.2E-36 3.1E-40 318.6 36.7 245 334-590 107-374 (410)
23 3dm0_A Maltose-binding peripla 100.0 3.1E-35 1.1E-39 335.7 43.3 281 269-584 382-692 (694)
24 1sq9_A Antiviral protein SKI8; 100.0 1.2E-35 4E-40 313.8 35.1 284 269-586 16-396 (397)
25 1gxr_A ESG1, transducin-like e 100.0 1.5E-34 5.2E-39 297.0 42.4 281 269-584 51-336 (337)
26 1nr0_A Actin interacting prote 100.0 4.4E-35 1.5E-39 329.6 41.6 278 270-588 60-358 (611)
27 2ymu_A WD-40 repeat protein; u 100.0 8.1E-35 2.8E-39 323.4 42.9 268 270-582 304-577 (577)
28 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-34 6.3E-39 293.5 41.3 280 269-595 18-306 (313)
29 2pm9_A Protein WEB1, protein t 100.0 3.5E-36 1.2E-40 319.6 28.3 285 271-590 14-342 (416)
30 4gqb_B Methylosome protein 50; 100.0 5E-35 1.7E-39 305.7 35.6 242 269-545 82-333 (344)
31 3ow8_A WD repeat-containing pr 100.0 1.2E-34 4E-39 299.8 37.8 249 330-590 26-284 (321)
32 1k8k_C P40, ARP2/3 complex 41 100.0 3.9E-35 1.3E-39 306.4 33.8 288 270-588 9-364 (372)
33 3i2n_A WD repeat-containing pr 100.0 3E-35 1E-39 305.2 32.7 282 269-587 18-355 (357)
34 3k26_A Polycomb protein EED; W 100.0 5.1E-35 1.7E-39 304.2 34.5 284 269-584 18-365 (366)
35 1r5m_A SIR4-interacting protei 100.0 1.3E-34 4.4E-39 307.1 38.0 275 269-584 108-424 (425)
36 4e54_B DNA damage-binding prot 100.0 1.7E-35 5.8E-40 318.8 30.8 287 269-589 119-434 (435)
37 3ei3_B DNA damage-binding prot 100.0 1.5E-34 5.3E-39 304.7 37.4 277 270-585 74-382 (383)
38 1got_B GT-beta; complex (GTP-b 100.0 1.4E-33 4.9E-38 293.6 40.3 250 328-589 47-305 (340)
39 2pm7_B Protein transport prote 100.0 1.3E-33 4.3E-38 288.3 35.9 244 334-585 8-285 (297)
40 3gre_A Serine/threonine-protei 100.0 7.1E-34 2.4E-38 305.1 34.7 281 269-582 63-437 (437)
41 1gxr_A ESG1, transducin-like e 100.0 1.2E-33 4.2E-38 290.2 35.0 280 271-589 11-300 (337)
42 2ymu_A WD-40 repeat protein; u 100.0 6.4E-33 2.2E-37 308.1 43.4 271 269-584 262-538 (577)
43 3vl1_A 26S proteasome regulato 100.0 3.9E-34 1.3E-38 304.7 31.2 277 272-588 59-368 (420)
44 3dwl_C Actin-related protein 2 100.0 4.7E-35 1.6E-39 307.5 22.8 281 271-583 13-377 (377)
45 2pm9_A Protein WEB1, protein t 100.0 1.7E-34 5.7E-39 306.6 27.0 285 269-586 67-415 (416)
46 4ery_A WD repeat-containing pr 100.0 6.6E-33 2.2E-37 284.0 37.7 252 327-590 14-273 (312)
47 4g56_B MGC81050 protein; prote 100.0 9.4E-34 3.2E-38 297.4 31.3 244 269-547 94-347 (357)
48 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-34 4.4E-39 318.9 25.6 268 284-587 178-519 (524)
49 1r5m_A SIR4-interacting protei 100.0 6.3E-33 2.2E-37 294.1 37.6 283 271-587 47-363 (425)
50 2pbi_B Guanine nucleotide-bind 100.0 1.5E-32 5.1E-37 287.9 39.2 251 329-589 57-319 (354)
51 1p22_A F-BOX/WD-repeat protein 100.0 3.5E-33 1.2E-37 300.4 35.2 274 271-592 135-421 (435)
52 3fm0_A Protein CIAO1; WDR39,SG 100.0 9.1E-33 3.1E-37 288.2 36.5 255 325-587 4-285 (345)
53 3vl1_A 26S proteasome regulato 100.0 6.2E-33 2.1E-37 295.5 35.8 276 271-585 99-419 (420)
54 4a11_B DNA excision repair pro 100.0 2.4E-32 8E-37 288.4 40.0 302 269-591 43-371 (408)
55 3frx_A Guanine nucleotide-bind 100.0 4E-32 1.4E-36 280.1 38.9 250 325-588 6-270 (319)
56 3v7d_B Cell division control p 100.0 6.7E-32 2.3E-36 292.0 41.7 275 272-591 125-427 (464)
57 1erj_A Transcriptional repress 100.0 6.3E-32 2.1E-36 287.0 40.5 247 331-590 60-346 (393)
58 3dw8_B Serine/threonine-protei 100.0 9.1E-33 3.1E-37 296.4 34.0 291 266-583 25-444 (447)
59 3iz6_a 40S ribosomal protein R 100.0 4.5E-33 1.5E-37 294.5 29.3 254 326-589 56-333 (380)
60 2aq5_A Coronin-1A; WD40 repeat 100.0 4.8E-33 1.7E-37 295.8 29.5 285 269-588 34-345 (402)
61 3bg1_A Protein SEC13 homolog; 100.0 3E-33 1E-37 288.2 26.6 245 334-585 12-293 (316)
62 2hes_X YDR267CP; beta-propelle 100.0 5.6E-32 1.9E-36 280.5 35.7 250 327-586 5-281 (330)
63 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-31 1.2E-35 285.3 42.5 272 271-591 121-397 (445)
64 3f3f_A Nucleoporin SEH1; struc 100.0 8.1E-32 2.8E-36 276.6 35.3 252 334-589 10-341 (351)
65 3mkq_A Coatomer beta'-subunit; 100.0 8.9E-32 3E-36 311.3 39.6 279 271-587 15-304 (814)
66 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.3E-31 1.1E-35 285.5 41.4 270 270-586 160-443 (445)
67 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-31 5.3E-36 323.9 42.9 277 269-585 615-913 (1249)
68 2xzm_R RACK1; ribosome, transl 100.0 3E-31 1E-35 276.2 38.5 248 327-589 12-289 (343)
69 4h5i_A Guanine nucleotide-exch 100.0 3E-32 1E-36 286.9 29.7 286 269-587 14-345 (365)
70 1yfq_A Cell cycle arrest prote 100.0 1.9E-31 6.5E-36 275.4 34.4 273 269-582 11-321 (342)
71 3jrp_A Fusion protein of prote 100.0 2.1E-31 7.3E-36 278.1 34.6 245 334-586 10-288 (379)
72 2pm7_B Protein transport prote 100.0 2.9E-31 1E-35 270.7 34.3 242 270-542 10-284 (297)
73 1pgu_A Actin interacting prote 100.0 4.6E-31 1.6E-35 294.4 38.1 280 269-589 18-332 (615)
74 3v7d_B Cell division control p 100.0 1.3E-30 4.6E-35 281.8 40.4 270 269-581 162-459 (464)
75 2oaj_A Protein SNI1; WD40 repe 100.0 3.9E-31 1.3E-35 309.8 38.1 177 271-450 19-243 (902)
76 2xyi_A Probable histone-bindin 100.0 4.1E-31 1.4E-35 284.2 33.9 258 324-587 117-412 (430)
77 3mmy_A MRNA export factor; mRN 100.0 9.9E-31 3.4E-35 271.6 34.1 281 269-588 39-349 (368)
78 1sq9_A Antiviral protein SKI8; 100.0 6E-31 2.1E-35 277.7 32.5 253 330-592 10-329 (397)
79 3dw8_B Serine/threonine-protei 100.0 8.1E-32 2.8E-36 289.0 25.7 246 333-589 26-377 (447)
80 3ei3_B DNA damage-binding prot 100.0 1.3E-30 4.5E-35 274.6 33.6 250 328-592 65-346 (383)
81 1pgu_A Actin interacting prote 100.0 1.5E-30 5.2E-35 290.3 35.9 270 270-584 64-365 (615)
82 1k8k_C P40, ARP2/3 complex 41 100.0 1.7E-30 5.7E-35 271.2 33.0 244 334-585 7-274 (372)
83 3mkq_A Coatomer beta'-subunit; 100.0 2.9E-30 1E-34 298.6 37.4 250 331-590 8-264 (814)
84 4aow_A Guanine nucleotide-bind 100.0 1.3E-29 4.6E-34 260.9 38.0 254 324-589 26-290 (340)
85 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.9E-30 1.7E-34 277.2 36.2 304 271-586 6-392 (450)
86 3dwl_C Actin-related protein 2 100.0 4.5E-32 1.5E-36 284.8 18.5 243 334-585 10-281 (377)
87 3zwl_B Eukaryotic translation 100.0 2.6E-29 9.1E-34 260.9 39.0 259 324-590 20-309 (369)
88 3bg1_A Protein SEC13 homolog; 100.0 6.2E-31 2.1E-35 270.9 25.8 242 269-542 13-292 (316)
89 2j04_B YDR362CP, TAU91; beta p 100.0 1.9E-31 6.6E-36 293.6 23.2 230 347-586 173-429 (524)
90 3sfz_A APAF-1, apoptotic pepti 100.0 6E-30 2.1E-34 310.0 38.1 281 271-589 659-1038(1249)
91 3odt_A Protein DOA1; ubiquitin 100.0 1.4E-29 4.9E-34 257.3 33.9 247 326-591 8-261 (313)
92 1yfq_A Cell cycle arrest prote 100.0 4.8E-30 1.7E-34 264.8 30.4 240 334-590 10-287 (342)
93 3dm0_A Maltose-binding peripla 100.0 1.9E-29 6.5E-34 287.7 37.7 251 330-590 376-637 (694)
94 3gre_A Serine/threonine-protei 100.0 2.3E-30 7.8E-35 277.7 27.9 249 328-590 54-364 (437)
95 2oaj_A Protein SNI1; WD40 repe 100.0 6.4E-30 2.2E-34 299.5 33.5 280 270-583 152-659 (902)
96 3i2n_A WD repeat-containing pr 100.0 5.3E-30 1.8E-34 265.5 29.0 246 334-589 17-295 (357)
97 3bws_A Protein LP49; two-domai 100.0 7.7E-29 2.6E-33 265.1 38.0 277 272-585 125-432 (433)
98 3jrp_A Fusion protein of prote 100.0 3.4E-29 1.2E-33 261.4 34.4 246 269-545 11-289 (379)
99 3k26_A Polycomb protein EED; W 100.0 5.7E-30 2E-34 266.0 27.6 242 334-589 17-322 (366)
100 4e54_B DNA damage-binding prot 100.0 5.3E-30 1.8E-34 275.8 25.9 246 334-591 118-393 (435)
101 3f3f_A Nucleoporin SEH1; struc 100.0 9.3E-29 3.2E-33 253.7 33.3 250 269-550 11-344 (351)
102 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-28 3.8E-33 258.5 33.5 281 270-590 20-341 (355)
103 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-28 5.1E-33 264.2 35.2 235 334-587 132-367 (435)
104 1l0q_A Surface layer protein; 100.0 9E-28 3.1E-32 253.2 39.7 270 282-591 5-281 (391)
105 3jro_A Fusion protein of prote 100.0 1.5E-29 5.2E-34 291.4 27.3 246 334-587 8-287 (753)
106 4gq1_A NUP37; propeller, trans 100.0 2.1E-28 7E-33 260.1 32.9 246 335-585 89-389 (393)
107 4aez_A CDC20, WD repeat-contai 100.0 1.1E-27 3.7E-32 254.7 34.8 241 336-590 94-341 (401)
108 2aq5_A Coronin-1A; WD40 repeat 100.0 5.5E-28 1.9E-32 256.7 30.5 243 337-588 36-302 (402)
109 2j04_A TAU60, YPL007P, hypothe 100.0 5.8E-29 2E-33 269.5 22.7 259 270-584 16-296 (588)
110 3lrv_A PRE-mRNA-splicing facto 100.0 5E-28 1.7E-32 251.7 28.3 258 282-586 51-334 (343)
111 2w18_A PALB2, fancn, partner a 100.0 2.4E-27 8.2E-32 242.3 32.6 282 270-583 40-355 (356)
112 3mmy_A MRNA export factor; mRN 100.0 3.6E-27 1.2E-31 244.7 34.5 248 327-590 30-309 (368)
113 2xyi_A Probable histone-bindin 100.0 1.6E-27 5.4E-32 256.1 30.6 248 270-543 129-410 (430)
114 4gga_A P55CDC, cell division c 100.0 1.4E-26 4.7E-31 247.8 36.8 255 269-562 147-414 (420)
115 4h5i_A Guanine nucleotide-exch 100.0 2.5E-27 8.6E-32 249.2 29.1 201 334-543 132-343 (365)
116 3jro_A Fusion protein of prote 100.0 1.3E-27 4.4E-32 275.2 28.2 246 269-545 9-287 (753)
117 3bws_A Protein LP49; two-domai 100.0 3.2E-26 1.1E-30 244.7 36.7 257 324-590 111-395 (433)
118 3vu4_A KMHSV2; beta-propeller 100.0 9.1E-27 3.1E-31 243.9 31.8 237 331-588 14-274 (355)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 9.6E-27 3.3E-31 251.3 32.8 238 336-583 5-337 (450)
120 4a11_B DNA excision repair pro 100.0 2E-26 6.9E-31 242.8 34.1 280 269-584 99-404 (408)
121 3lrv_A PRE-mRNA-splicing facto 100.0 1.9E-27 6.6E-32 247.2 24.0 231 342-587 43-294 (343)
122 2j04_A TAU60, YPL007P, hypothe 100.0 3.6E-27 1.2E-31 255.5 25.0 255 269-574 52-350 (588)
123 1l0q_A Surface layer protein; 100.0 3.9E-25 1.3E-29 233.0 39.4 279 272-588 34-345 (391)
124 4ggc_A P55CDC, cell division c 99.9 3.6E-24 1.2E-28 218.1 37.4 241 337-591 27-279 (318)
125 4gq1_A NUP37; propeller, trans 99.9 9.2E-26 3.1E-30 239.6 24.1 225 282-541 104-387 (393)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 7E-25 2.4E-29 234.7 29.9 277 272-587 65-389 (415)
127 1nir_A Nitrite reductase; hemo 99.9 2.5E-23 8.6E-28 230.2 35.8 287 272-593 181-522 (543)
128 3u4y_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 208.8 34.4 274 282-589 13-308 (331)
129 1nir_A Nitrite reductase; hemo 99.9 1.2E-22 4.2E-27 224.7 34.7 276 277-589 145-462 (543)
130 2ojh_A Uncharacterized protein 99.9 2.9E-23 9.9E-28 207.9 25.9 256 285-576 18-293 (297)
131 1ri6_A Putative isomerase YBHE 99.9 1.4E-22 4.8E-27 208.3 30.9 266 285-584 11-307 (343)
132 2ecf_A Dipeptidyl peptidase IV 99.9 6.5E-23 2.2E-27 235.0 29.7 277 271-585 38-413 (741)
133 3vgz_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 201.2 38.0 266 272-576 43-335 (353)
134 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.9E-22 2.4E-26 211.4 35.7 239 289-567 159-410 (415)
135 1xfd_A DIP, dipeptidyl aminope 99.9 4.1E-23 1.4E-27 235.8 24.0 280 272-586 19-394 (723)
136 2w18_A PALB2, fancn, partner a 99.9 6E-22 2E-26 202.4 27.7 183 345-541 143-355 (356)
137 1pby_B Quinohemoprotein amine 99.9 3.5E-21 1.2E-25 197.3 30.0 269 282-594 4-319 (337)
138 2z3z_A Dipeptidyl aminopeptida 99.9 1.4E-21 4.7E-26 222.8 29.0 277 270-587 82-437 (706)
139 3hfq_A Uncharacterized protein 99.9 2E-20 7E-25 193.9 33.9 253 324-584 28-316 (347)
140 1ri6_A Putative isomerase YBHE 99.9 4.4E-20 1.5E-24 189.6 31.6 264 272-567 40-335 (343)
141 3scy_A Hypothetical bacterial 99.9 2E-19 6.9E-24 187.6 35.1 256 324-584 39-336 (361)
142 2ecf_A Dipeptidyl peptidase IV 99.9 1.1E-20 3.8E-25 216.4 27.3 274 271-586 110-460 (741)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 8.2E-20 2.8E-24 196.5 31.2 296 269-586 36-406 (434)
144 3vgz_A Uncharacterized protein 99.9 2.7E-19 9.2E-24 184.9 32.3 244 334-591 39-309 (353)
145 1k32_A Tricorn protease; prote 99.9 9.8E-20 3.4E-24 217.0 31.4 202 372-587 198-463 (1045)
146 2z3z_A Dipeptidyl aminopeptida 99.9 4E-20 1.4E-24 210.6 26.2 239 336-587 82-393 (706)
147 3u4y_A Uncharacterized protein 99.9 3.8E-19 1.3E-23 182.6 30.1 236 341-588 3-255 (331)
148 1k32_A Tricorn protease; prote 99.8 2E-19 7E-24 214.2 30.8 272 271-587 297-639 (1045)
149 3pe7_A Oligogalacturonate lyas 99.8 2.5E-19 8.4E-24 188.2 27.8 281 271-587 37-384 (388)
150 1z68_A Fibroblast activation p 99.8 2.9E-20 1E-24 212.3 21.3 280 274-585 20-391 (719)
151 1xfd_A DIP, dipeptidyl aminope 99.8 7.3E-20 2.5E-24 208.9 24.5 269 271-574 62-429 (723)
152 2ojh_A Uncharacterized protein 99.8 1.9E-19 6.6E-24 179.9 23.7 222 353-588 18-261 (297)
153 1jmx_B Amine dehydrogenase; ox 99.8 3.1E-19 1E-23 184.0 25.4 237 340-592 4-332 (349)
154 3o4h_A Acylamino-acid-releasin 99.8 2.1E-19 7.3E-24 200.2 25.4 264 271-585 23-315 (582)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-18 8E-23 180.4 30.4 256 324-586 26-342 (365)
156 3hfq_A Uncharacterized protein 99.8 1.1E-17 3.7E-22 173.3 31.1 246 272-547 42-323 (347)
157 1jmx_B Amine dehydrogenase; ox 99.8 9.2E-18 3.1E-22 172.8 29.9 237 275-553 5-335 (349)
158 1pby_B Quinohemoprotein amine 99.8 3.7E-18 1.3E-22 174.7 26.5 240 272-553 36-320 (337)
159 3o4h_A Acylamino-acid-releasin 99.8 1.2E-18 4E-23 194.2 20.8 234 334-583 20-274 (582)
160 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-18 6.9E-23 185.6 21.2 238 335-584 36-332 (434)
161 3scy_A Hypothetical bacterial 99.8 1.7E-16 5.7E-21 165.4 33.9 260 272-563 52-360 (361)
162 1z68_A Fibroblast activation p 99.8 4.2E-18 1.4E-22 194.4 20.6 280 272-587 62-445 (719)
163 3c5m_A Oligogalacturonate lyas 99.8 3.6E-17 1.2E-21 171.7 24.4 276 271-584 37-381 (396)
164 3fvz_A Peptidyl-glycine alpha- 99.8 4.3E-16 1.5E-20 160.8 31.8 241 335-586 23-323 (329)
165 4a5s_A Dipeptidyl peptidase 4 99.7 1.7E-16 5.8E-21 182.1 27.8 276 274-584 21-397 (740)
166 1q7f_A NHL, brain tumor CG1071 99.7 6.2E-15 2.1E-19 148.2 34.3 235 335-587 29-282 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.7 1.2E-16 4E-21 183.5 23.7 242 336-588 17-356 (740)
168 3pe7_A Oligogalacturonate lyas 99.7 5.3E-16 1.8E-20 162.7 23.9 240 341-588 41-332 (388)
169 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.4E-15 8.3E-20 157.4 26.7 245 272-544 42-342 (365)
170 2dg1_A DRP35, lactonase; beta 99.7 7.2E-15 2.5E-19 151.0 29.1 261 272-575 8-300 (333)
171 2oiz_A Aromatic amine dehydrog 99.7 2.7E-15 9.2E-20 157.1 26.3 259 274-567 54-360 (361)
172 2gop_A Trilobed protease; beta 99.7 2.5E-14 8.4E-19 147.6 30.4 240 288-584 42-330 (347)
173 3azo_A Aminopeptidase; POP fam 99.7 4.4E-15 1.5E-19 167.6 26.3 282 270-587 24-371 (662)
174 2oiz_A Aromatic amine dehydrog 99.7 1.1E-14 3.6E-19 152.6 26.2 261 287-591 29-342 (361)
175 2xdw_A Prolyl endopeptidase; a 99.7 2.4E-14 8.3E-19 163.4 30.7 243 336-587 125-416 (710)
176 1qks_A Cytochrome CD1 nitrite 99.6 4.6E-13 1.6E-17 148.1 35.5 289 271-592 198-545 (567)
177 3azo_A Aminopeptidase; POP fam 99.6 1.9E-14 6.5E-19 162.4 23.9 239 334-584 22-322 (662)
178 1rwi_B Serine/threonine-protei 99.6 1.2E-13 4.1E-18 137.1 26.2 240 337-590 25-269 (270)
179 3e5z_A Putative gluconolactona 99.6 4.6E-13 1.6E-17 135.4 30.9 223 334-576 26-278 (296)
180 3c5m_A Oligogalacturonate lyas 99.6 1.1E-14 3.8E-19 152.5 19.4 240 337-588 37-332 (396)
181 2z2n_A Virginiamycin B lyase; 99.6 1.1E-11 3.7E-16 124.3 40.1 271 270-586 15-296 (299)
182 3fvz_A Peptidyl-glycine alpha- 99.6 1.1E-12 3.6E-17 135.2 33.5 235 271-542 25-321 (329)
183 1q7f_A NHL, brain tumor CG1071 99.6 7.3E-13 2.5E-17 132.9 31.3 232 271-544 31-281 (286)
184 1qks_A Cytochrome CD1 nitrite 99.6 3.1E-12 1.1E-16 141.5 36.6 268 283-586 171-478 (567)
185 2bkl_A Prolyl endopeptidase; m 99.6 5.6E-14 1.9E-18 160.0 21.8 241 334-588 119-400 (695)
186 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-12 5.7E-17 148.1 32.7 241 270-545 125-416 (710)
187 2gop_A Trilobed protease; beta 99.6 4.3E-13 1.5E-17 138.3 25.2 229 272-556 61-342 (347)
188 2dg1_A DRP35, lactonase; beta 99.6 5.4E-13 1.9E-17 136.9 25.0 237 336-585 6-263 (333)
189 3dsm_A Uncharacterized protein 99.5 2.1E-12 7.3E-17 133.0 27.1 239 336-592 44-308 (328)
190 3no2_A Uncharacterized protein 99.5 4E-12 1.4E-16 127.8 27.9 211 346-573 4-231 (276)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 4.7E-12 1.6E-16 128.3 28.6 237 335-586 17-300 (314)
192 3dsm_A Uncharacterized protein 99.5 6.6E-12 2.3E-16 129.3 28.8 248 272-562 46-319 (328)
193 3e5z_A Putative gluconolactona 99.5 3.6E-12 1.2E-16 128.7 26.3 233 271-546 29-289 (296)
194 1rwi_B Serine/threonine-protei 99.5 4.9E-12 1.7E-16 125.4 25.9 236 271-545 25-266 (270)
195 2qc5_A Streptogramin B lactona 99.5 1.9E-10 6.6E-15 115.1 37.6 269 271-583 21-298 (300)
196 1xip_A Nucleoporin NUP159; bet 99.5 1.2E-11 4.1E-16 129.6 29.2 283 271-588 39-385 (388)
197 2z2n_A Virginiamycin B lyase; 99.5 3.1E-10 1.1E-14 113.6 35.8 236 334-584 13-254 (299)
198 1yr2_A Prolyl oligopeptidase; 99.5 5.1E-12 1.8E-16 144.8 25.5 243 336-588 163-444 (741)
199 2mad_H Methylamine dehydrogena 99.4 4.9E-10 1.7E-14 117.6 36.4 257 290-591 48-356 (373)
200 3no2_A Uncharacterized protein 99.4 3.5E-11 1.2E-15 120.9 26.5 209 278-529 3-231 (276)
201 2mad_H Methylamine dehydrogena 99.4 3.3E-10 1.1E-14 118.8 35.1 243 274-550 70-357 (373)
202 3hrp_A Uncharacterized protein 99.4 1.4E-10 4.9E-15 123.2 30.8 235 336-583 131-408 (409)
203 2qc5_A Streptogramin B lactona 99.4 1.4E-09 4.8E-14 108.8 35.9 236 334-584 18-259 (300)
204 1yr2_A Prolyl oligopeptidase; 99.4 5.3E-11 1.8E-15 136.4 27.9 239 270-545 163-443 (741)
205 3sjl_D Methylamine dehydrogena 99.4 2E-10 7E-15 119.9 28.9 257 275-565 83-384 (386)
206 3sjl_D Methylamine dehydrogena 99.4 1.2E-10 4.1E-15 121.6 27.1 272 288-599 58-377 (386)
207 2bkl_A Prolyl endopeptidase; m 99.4 5.1E-11 1.7E-15 135.5 25.9 232 345-584 77-348 (695)
208 3g4e_A Regucalcin; six bladed 99.4 4.4E-10 1.5E-14 113.7 29.9 223 335-574 12-261 (297)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 4E-10 1.4E-14 114.0 29.6 237 272-543 20-299 (314)
210 3iuj_A Prolyl endopeptidase; h 99.4 5.5E-11 1.9E-15 135.2 24.0 243 334-588 127-408 (693)
211 2ghs_A AGR_C_1268P; regucalcin 99.3 2.8E-09 9.6E-14 109.4 32.2 219 338-576 51-293 (326)
212 1xip_A Nucleoporin NUP159; bet 99.3 7.2E-11 2.5E-15 123.7 20.2 172 336-529 38-232 (388)
213 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.9E-14 108.8 28.9 224 272-530 15-261 (297)
214 3c75_H MADH, methylamine dehyd 99.3 5.6E-10 1.9E-14 118.5 25.0 264 289-591 99-408 (426)
215 3dr2_A Exported gluconolactona 99.3 1.4E-09 4.7E-14 110.4 26.3 226 334-580 43-302 (305)
216 3c75_H MADH, methylamine dehyd 99.2 1.4E-09 4.8E-14 115.4 25.3 247 274-550 122-409 (426)
217 3hrp_A Uncharacterized protein 99.2 5.7E-09 1.9E-13 110.8 28.6 230 271-541 132-408 (409)
218 1fwx_A Nitrous oxide reductase 99.2 9.6E-10 3.3E-14 119.6 22.5 305 260-587 5-433 (595)
219 2ghs_A AGR_C_1268P; regucalcin 99.2 3E-08 1E-12 101.7 32.5 220 272-530 51-291 (326)
220 3iuj_A Prolyl endopeptidase; h 99.2 4.2E-09 1.4E-13 119.7 26.1 239 270-546 129-408 (693)
221 1kb0_A Quinohemoprotein alcoho 99.1 7.8E-09 2.7E-13 117.0 27.4 239 346-594 127-516 (677)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.1 7.8E-08 2.7E-12 100.2 32.6 264 281-591 55-343 (376)
223 2qe8_A Uncharacterized protein 99.1 1.5E-08 5.1E-13 104.7 26.1 241 324-578 7-314 (343)
224 3dr2_A Exported gluconolactona 99.1 1.5E-08 5.3E-13 102.6 25.3 225 272-541 47-304 (305)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.1E-07 3.8E-12 99.1 31.2 259 276-582 100-375 (376)
226 1yiq_A Quinohemoprotein alcoho 99.1 3.9E-08 1.3E-12 111.5 28.6 238 346-593 120-513 (689)
227 3hxj_A Pyrrolo-quinoline quino 99.0 2.1E-08 7.2E-13 101.9 22.9 219 347-588 107-327 (330)
228 1npe_A Nidogen, entactin; glyc 99.0 5.9E-07 2E-11 88.9 32.6 219 336-567 36-263 (267)
229 1mda_H Methylamine dehydrogena 99.0 6.9E-09 2.3E-13 108.2 18.8 251 274-564 69-366 (368)
230 1mda_H Methylamine dehydrogena 99.0 8.6E-09 3E-13 107.5 18.4 260 290-596 47-357 (368)
231 1yiq_A Quinohemoprotein alcoho 99.0 5.4E-08 1.8E-12 110.3 26.3 213 356-571 182-534 (689)
232 2ece_A 462AA long hypothetical 99.0 2.7E-07 9.2E-12 97.2 29.5 218 345-573 93-399 (462)
233 1kb0_A Quinohemoprotein alcoho 99.0 7.4E-08 2.5E-12 108.9 27.0 271 280-585 129-567 (677)
234 2hz6_A Endoplasmic reticulum t 99.0 2.7E-10 9.1E-15 119.4 4.8 201 346-567 8-216 (369)
235 2iwa_A Glutamine cyclotransfer 98.9 5.6E-07 1.9E-11 89.0 26.5 203 326-543 9-237 (266)
236 2qe8_A Uncharacterized protein 98.9 1.8E-07 6.2E-12 96.5 23.0 190 334-528 65-308 (343)
237 2hz6_A Endoplasmic reticulum t 98.9 1.7E-09 5.7E-14 113.3 6.8 254 282-584 12-278 (369)
238 3hxj_A Pyrrolo-quinoline quino 98.8 3.9E-08 1.3E-12 99.9 15.2 254 277-583 27-282 (330)
239 1fwx_A Nitrous oxide reductase 98.8 5.5E-07 1.9E-11 98.0 24.7 228 287-544 110-432 (595)
240 2fp8_A Strictosidine synthase; 98.8 1.8E-06 6E-11 88.0 27.3 236 336-586 19-314 (322)
241 2iwa_A Glutamine cyclotransfer 98.8 1.6E-06 5.5E-11 85.7 24.8 194 271-501 22-238 (266)
242 2ad6_A Methanol dehydrogenase 98.8 2.4E-06 8.3E-11 94.5 28.9 237 347-594 115-503 (571)
243 1npe_A Nidogen, entactin; glyc 98.8 9.1E-06 3.1E-10 80.2 30.2 231 348-591 2-244 (267)
244 2p4o_A Hypothetical protein; p 98.8 1.1E-05 3.9E-10 81.5 31.0 241 326-576 22-279 (306)
245 2ece_A 462AA long hypothetical 98.7 1.6E-06 5.6E-11 91.2 24.0 185 337-529 139-399 (462)
246 1kv9_A Type II quinohemoprotei 98.7 4.8E-06 1.6E-10 93.9 29.7 237 347-593 117-496 (668)
247 1w6s_A Methanol dehydrogenase 98.7 5.3E-06 1.8E-10 92.0 28.7 242 341-593 111-511 (599)
248 4a2l_A BT_4663, two-component 98.7 6E-05 2.1E-09 86.6 38.3 271 272-587 175-482 (795)
249 3v64_C Agrin; beta propeller, 98.7 0.0001 3.4E-09 76.1 35.1 249 274-561 38-293 (349)
250 3nol_A Glutamine cyclotransfer 98.6 8.3E-06 2.8E-10 79.9 24.5 188 327-529 32-243 (262)
251 3nol_A Glutamine cyclotransfer 98.6 5E-06 1.7E-10 81.4 22.7 180 269-485 42-243 (262)
252 3v65_B Low-density lipoprotein 98.6 7E-05 2.4E-09 78.5 33.0 250 274-562 81-337 (386)
253 1kv9_A Type II quinohemoprotei 98.6 7.1E-06 2.4E-10 92.5 26.4 257 281-573 119-520 (668)
254 4a2l_A BT_4663, two-component 98.6 0.00012 4.2E-09 84.0 37.0 270 270-587 263-573 (795)
255 1flg_A Protein (quinoprotein e 98.6 2.5E-05 8.7E-10 86.4 29.6 237 347-594 117-525 (582)
256 1ijq_A LDL receptor, low-densi 98.6 0.00031 1.1E-08 71.3 35.3 230 283-552 4-247 (316)
257 3mbr_X Glutamine cyclotransfer 98.6 2.5E-05 8.7E-10 75.7 25.3 181 269-485 20-222 (243)
258 3nok_A Glutaminyl cyclase; bet 98.6 1E-05 3.4E-10 79.3 22.2 180 269-485 54-253 (268)
259 2ad6_A Methanol dehydrogenase 98.5 2.2E-05 7.7E-10 86.7 27.1 254 281-571 117-523 (571)
260 2xzh_A Clathrin heavy chain 1; 98.5 0.0013 4.4E-08 65.9 36.9 237 340-588 71-335 (365)
261 3p5b_L Low density lipoprotein 98.5 0.00056 1.9E-08 71.9 36.1 244 280-562 83-339 (400)
262 3nok_A Glutaminyl cyclase; bet 98.5 3.7E-05 1.3E-09 75.3 24.2 186 328-529 45-253 (268)
263 1k3i_A Galactose oxidase precu 98.5 5.1E-06 1.7E-10 93.6 20.9 245 324-574 229-530 (656)
264 3mbr_X Glutamine cyclotransfer 98.5 9.1E-05 3.1E-09 71.8 25.8 189 326-529 9-222 (243)
265 3v64_C Agrin; beta propeller, 98.5 0.00039 1.3E-08 71.6 32.4 238 335-587 33-277 (349)
266 3sov_A LRP-6, low-density lipo 98.4 0.00034 1.2E-08 71.1 30.8 244 281-561 5-256 (318)
267 3v9f_A Two-component system se 98.4 0.00037 1.3E-08 79.9 34.0 272 270-587 258-570 (781)
268 3v65_B Low-density lipoprotein 98.4 0.0004 1.4E-08 72.6 31.4 236 338-587 79-320 (386)
269 2fp8_A Strictosidine synthase; 98.4 0.00025 8.7E-09 71.8 28.9 231 273-542 22-312 (322)
270 2xbg_A YCF48-like protein; pho 98.4 0.0023 7.9E-08 65.1 35.7 268 271-582 37-319 (327)
271 3v9f_A Two-component system se 98.4 0.00055 1.9E-08 78.4 33.8 273 271-586 212-525 (781)
272 1ijq_A LDL receptor, low-densi 98.3 0.0015 5E-08 66.2 32.8 227 349-587 3-240 (316)
273 1flg_A Protein (quinoprotein e 98.3 0.00071 2.4E-08 74.8 32.1 80 489-570 464-544 (582)
274 2p4o_A Hypothetical protein; p 98.3 0.00044 1.5E-08 69.6 27.7 221 270-529 32-276 (306)
275 1w6s_A Methanol dehydrogenase 98.3 0.00024 8.3E-09 78.6 27.6 215 348-572 167-534 (599)
276 3tc9_A Hypothetical hydrolase; 98.3 0.0004 1.4E-08 73.8 28.1 236 336-584 137-429 (430)
277 2xe4_A Oligopeptidase B; hydro 98.3 0.00013 4.4E-09 83.4 25.8 236 271-545 175-460 (751)
278 3sov_A LRP-6, low-density lipo 98.2 0.00098 3.3E-08 67.7 29.1 230 349-588 6-241 (318)
279 3qqz_A Putative uncharacterize 98.2 0.0011 3.7E-08 64.9 28.0 197 335-541 26-251 (255)
280 1bpo_A Protein (clathrin); cla 98.2 0.0083 2.8E-07 62.4 39.4 236 340-587 70-333 (494)
281 3m0c_C LDL receptor, low-densi 98.2 0.0027 9.4E-08 72.4 34.7 232 281-551 396-640 (791)
282 2xe4_A Oligopeptidase B; hydro 98.2 0.00014 4.6E-09 83.2 24.1 240 337-587 175-460 (751)
283 3p5b_L Low density lipoprotein 98.2 0.0035 1.2E-07 65.7 32.9 230 348-588 84-323 (400)
284 4hw6_A Hypothetical protein, I 98.2 0.0011 3.8E-08 70.4 29.0 236 337-584 140-432 (433)
285 4a0p_A LRP6, LRP-6, low-densit 98.2 0.0049 1.7E-07 68.6 35.3 233 280-550 6-244 (628)
286 3qqz_A Putative uncharacterize 98.1 0.0045 1.5E-07 60.5 28.8 203 371-582 20-250 (255)
287 1k3i_A Galactose oxidase precu 98.0 0.00036 1.2E-08 78.3 21.5 254 324-587 176-499 (656)
288 3kya_A Putative phosphatase; s 98.0 0.0048 1.7E-07 66.1 28.7 246 337-590 140-480 (496)
289 3tc9_A Hypothetical hydrolase; 97.9 0.0038 1.3E-07 66.2 27.2 233 273-541 140-428 (430)
290 3m0c_C LDL receptor, low-densi 97.9 0.012 4.2E-07 67.0 31.7 228 349-588 397-635 (791)
291 4hw6_A Hypothetical protein, I 97.9 0.0057 1.9E-07 64.8 27.0 234 272-541 141-431 (433)
292 2xbg_A YCF48-like protein; pho 97.9 0.022 7.5E-07 57.7 30.4 232 269-541 79-320 (327)
293 1n7d_A LDL receptor, low-densi 97.8 5.3E-05 1.8E-09 85.7 11.5 216 336-563 406-634 (699)
294 2ism_A Putative oxidoreductase 97.8 0.0068 2.3E-07 62.3 26.5 228 336-573 31-333 (352)
295 4a0p_A LRP6, LRP-6, low-densit 97.8 0.031 1E-06 62.2 33.2 229 348-588 7-240 (628)
296 3amr_A 3-phytase; beta-propell 97.8 0.007 2.4E-07 61.6 25.2 197 347-551 40-272 (355)
297 3s94_A LRP-6, low-density lipo 97.8 0.013 4.4E-07 65.1 29.6 231 282-549 11-249 (619)
298 3amr_A 3-phytase; beta-propell 97.7 0.0077 2.6E-07 61.3 23.9 183 388-584 41-262 (355)
299 3a9g_A Putative uncharacterize 97.6 0.045 1.5E-06 56.2 28.9 233 335-573 28-330 (354)
300 3ei3_A DNA damage-binding prot 97.6 0.19 6.4E-06 59.8 36.8 249 325-584 543-872 (1158)
301 3s94_A LRP-6, low-density lipo 97.6 0.019 6.6E-07 63.7 26.4 224 356-588 17-246 (619)
302 2g8s_A Glucose/sorbosone dehyd 97.6 0.064 2.2E-06 55.0 28.7 242 336-584 18-351 (353)
303 2vpj_A Kelch-like protein 12; 97.5 0.0077 2.6E-07 59.9 19.7 227 347-587 15-280 (301)
304 1xi4_A Clathrin heavy chain; a 97.5 0.007 2.4E-07 71.6 21.6 232 341-584 71-330 (1630)
305 2ism_A Putative oxidoreductase 97.5 0.042 1.4E-06 56.3 25.6 221 272-528 33-332 (352)
306 2xzh_A Clathrin heavy chain 1; 97.5 0.066 2.3E-06 53.7 25.5 195 272-500 109-332 (365)
307 2p9w_A MAL S 1 allergenic prot 97.4 0.057 1.9E-06 54.5 24.6 155 269-449 12-215 (334)
308 3ii7_A Kelch-like protein 7; p 97.4 0.04 1.4E-06 54.8 24.0 217 288-545 23-274 (306)
309 3kya_A Putative phosphatase; s 97.3 0.086 2.9E-06 56.4 26.7 243 272-548 141-480 (496)
310 1bpo_A Protein (clathrin); cla 97.3 0.089 3E-06 54.8 25.5 192 275-500 111-331 (494)
311 2vpj_A Kelch-like protein 12; 97.3 0.02 7E-07 56.8 20.7 218 289-545 31-280 (301)
312 3ii7_A Kelch-like protein 7; p 97.3 0.02 6.8E-07 57.0 20.0 226 349-587 14-274 (306)
313 3sbq_A Nitrous-oxide reductase 97.3 0.084 2.9E-06 56.6 24.9 311 258-587 58-480 (638)
314 1n7d_A LDL receptor, low-densi 97.2 0.00098 3.3E-08 75.3 10.8 224 356-590 385-619 (699)
315 2xn4_A Kelch-like protein 2; s 97.2 0.028 9.7E-07 55.8 20.3 187 346-545 61-278 (302)
316 2p9w_A MAL S 1 allergenic prot 97.2 0.043 1.5E-06 55.4 21.1 163 414-585 8-215 (334)
317 2xn4_A Kelch-like protein 2; s 97.1 0.022 7.5E-07 56.6 18.8 224 348-587 17-278 (302)
318 3sre_A PON1, serum paraoxonase 97.0 0.083 2.9E-06 54.1 21.8 219 337-568 51-327 (355)
319 1zgk_A Kelch-like ECH-associat 96.8 0.044 1.5E-06 54.7 18.0 149 346-503 70-243 (308)
320 4asc_A Kelch repeat and BTB do 96.8 0.11 3.9E-06 51.8 21.1 151 344-503 43-224 (315)
321 1cru_A Protein (soluble quinop 96.8 0.73 2.5E-05 48.8 29.1 103 336-438 27-163 (454)
322 2woz_A Kelch repeat and BTB do 96.7 0.23 7.9E-06 49.5 22.6 151 343-503 53-234 (318)
323 3sre_A PON1, serum paraoxonase 96.7 0.42 1.4E-05 48.8 24.1 174 395-575 81-287 (355)
324 1zgk_A Kelch-like ECH-associat 96.6 0.061 2.1E-06 53.6 17.1 226 346-587 24-289 (308)
325 3das_A Putative oxidoreductase 96.6 0.76 2.6E-05 46.7 29.5 233 334-573 30-326 (347)
326 3s25_A Hypothetical 7-bladed b 96.5 0.36 1.2E-05 48.2 21.6 213 344-586 22-256 (302)
327 3ott_A Two-component system se 96.5 1.7 5.7E-05 49.0 35.4 260 270-581 22-303 (758)
328 4asc_A Kelch repeat and BTB do 96.4 0.16 5.5E-06 50.6 19.0 220 350-586 8-278 (315)
329 3pbp_A Nucleoporin NUP82; beta 96.4 0.36 1.2E-05 50.2 21.3 139 280-445 32-208 (452)
330 3a9g_A Putative uncharacterize 96.4 1 3.4E-05 45.9 27.9 222 272-527 31-328 (354)
331 2woz_A Kelch repeat and BTB do 96.3 0.25 8.4E-06 49.3 19.3 215 358-587 25-289 (318)
332 3ott_A Two-component system se 96.2 2.3 7.7E-05 47.9 35.4 264 271-584 64-351 (758)
333 3pbp_A Nucleoporin NUP82; beta 96.2 0.081 2.8E-06 55.0 14.7 108 473-587 27-160 (452)
334 3s25_A Hypothetical 7-bladed b 96.2 1.2 4.1E-05 44.3 31.0 214 341-583 58-291 (302)
335 2uvk_A YJHT; unknown function, 95.6 0.12 3.9E-06 52.6 13.4 232 346-589 19-346 (357)
336 3das_A Putative oxidoreductase 95.5 0.48 1.7E-05 48.2 17.4 164 413-583 26-231 (347)
337 2g8s_A Glucose/sorbosone dehyd 95.4 0.43 1.5E-05 48.7 16.7 146 419-571 18-214 (353)
338 2zwa_A Leucine carboxyl methyl 95.3 0.43 1.5E-05 53.5 17.7 195 345-546 396-638 (695)
339 1cru_A Protein (soluble quinop 95.2 1.2 4E-05 47.2 19.8 161 418-585 26-259 (454)
340 2uvk_A YJHT; unknown function, 95.2 0.64 2.2E-05 47.0 17.4 144 357-507 168-349 (357)
341 3sbq_A Nitrous-oxide reductase 95.1 4.3 0.00015 43.6 23.2 228 350-586 73-409 (638)
342 2be1_A Serine/threonine-protei 95.0 0.6 2.1E-05 47.3 15.9 109 348-463 11-138 (339)
343 2be1_A Serine/threonine-protei 94.5 1 3.4E-05 45.7 16.3 152 354-513 64-245 (339)
344 3ei3_A DNA damage-binding prot 94.4 11 0.00037 44.8 36.2 223 349-586 485-725 (1158)
345 1tl2_A L10, protein (tachylect 94.4 3.4 0.00012 39.0 19.3 154 419-587 41-210 (236)
346 2zwa_A Leucine carboxyl methyl 94.3 0.3 1E-05 54.8 13.1 155 346-504 451-639 (695)
347 1xi4_A Clathrin heavy chain; a 94.2 1.2 4.1E-05 53.1 17.8 195 272-500 108-331 (1630)
348 1tl2_A L10, protein (tachylect 93.8 0.23 7.9E-06 46.9 8.9 142 336-484 41-198 (236)
349 3qhy_B Beta-lactamase inhibito 92.9 5.8 0.0002 38.7 18.3 224 336-587 24-248 (282)
350 3qhy_B Beta-lactamase inhibito 91.1 12 0.00041 36.4 19.2 221 272-544 26-247 (282)
351 4hvt_A Ritya.17583.B, post-pro 83.5 60 0.0021 36.1 23.1 236 338-584 131-429 (711)
352 3kci_A Probable E3 ubiquitin-p 81.1 50 0.0017 33.4 30.5 249 272-543 55-345 (389)
353 4gq2_M Nucleoporin NUP120; bet 78.1 27 0.00092 40.4 15.1 31 420-450 237-267 (950)
354 2wg3_C Hedgehog-interacting pr 77.6 47 0.0016 34.8 15.6 107 467-576 14-160 (463)
355 3b7f_A Glycosyl hydrolase, BNR 77.4 63 0.0022 32.5 27.0 235 334-579 53-366 (394)
356 2wg3_C Hedgehog-interacting pr 77.2 75 0.0025 33.2 30.3 245 336-585 14-371 (463)
357 4gq2_M Nucleoporin NUP120; bet 72.2 24 0.00081 40.9 12.6 39 336-374 236-274 (950)
358 3uc1_A DNA gyrase subunit A; D 67.1 1E+02 0.0035 30.5 22.4 235 348-588 4-282 (327)
359 3kci_A Probable E3 ubiquitin-p 64.9 1.2E+02 0.0041 30.5 26.2 276 281-585 12-345 (389)
360 1suu_A DNA gyrase subunit A; t 62.7 1.2E+02 0.0041 29.7 25.3 234 345-585 6-283 (312)
361 3uc1_A DNA gyrase subunit A; D 62.7 1.2E+02 0.0042 29.9 20.8 164 269-449 42-228 (327)
362 3mvd_K Regulator of chromosome 60.8 1.5E+02 0.005 30.1 33.0 281 275-585 29-374 (423)
363 4hvt_A Ritya.17583.B, post-pro 60.2 2.1E+02 0.0071 31.7 24.7 253 257-542 112-429 (711)
364 4fhn_B Nucleoporin NUP120; pro 60.1 23 0.00078 41.9 9.4 38 337-374 239-276 (1139)
365 4d9s_A UVB-resistance protein 57.6 1.6E+02 0.0056 29.7 35.1 285 272-585 18-357 (406)
366 1a12_A RCC1, regulator of chro 57.4 1.7E+02 0.0057 29.7 26.3 244 271-542 60-364 (413)
367 2rqw_B 24-meric peptide from s 57.3 5.1 0.00017 23.4 1.5 12 101-112 3-14 (26)
368 3q6k_A 43.2 kDa salivary prote 55.5 1.8E+02 0.0061 29.5 22.3 164 358-527 124-340 (381)
369 4fhn_B Nucleoporin NUP120; pro 55.1 78 0.0027 37.3 12.8 31 420-450 239-269 (1139)
370 1zi0_A DNA gyrase subunit A; b 53.9 1.7E+02 0.0057 28.6 19.9 190 388-585 4-226 (307)
371 3no0_A DNA gyrase subunit A; D 50.9 1.7E+02 0.0059 27.9 21.5 156 267-449 22-196 (276)
372 1wp5_A Topoisomerase IV; broke 49.0 2E+02 0.007 28.2 23.4 236 345-586 3-278 (323)
373 1zi0_A DNA gyrase subunit A; b 48.9 2E+02 0.0067 28.0 26.1 235 346-586 2-278 (307)
374 1suu_A DNA gyrase subunit A; t 48.6 2E+02 0.0069 28.0 21.0 193 386-586 7-232 (312)
375 3l6v_A GYRA, DNA gyrase subuni 48.3 2.3E+02 0.0077 28.5 25.2 235 343-585 3-316 (370)
376 4d9s_A UVB-resistance protein 46.6 2.4E+02 0.0083 28.4 25.4 206 271-499 122-356 (406)
377 4a9v_A PHOX; hydrolase, beta-p 45.4 59 0.002 35.0 8.7 31 324-354 519-549 (592)
378 3f7f_A Nucleoporin NUP120; nuc 44.8 1.6E+02 0.0055 32.6 12.2 38 336-375 222-259 (729)
379 4a9v_A PHOX; hydrolase, beta-p 44.4 79 0.0027 34.1 9.4 63 511-573 476-549 (592)
380 3mvd_K Regulator of chromosome 44.0 2.7E+02 0.0091 28.1 30.9 246 272-543 77-374 (423)
381 3zwu_A Alkaline phosphatase PH 43.9 73 0.0025 34.5 9.3 61 512-572 477-548 (592)
382 3q6k_A 43.2 kDa salivary prote 43.4 2.7E+02 0.0094 28.1 17.6 93 491-584 123-252 (381)
383 3zwu_A Alkaline phosphatase PH 40.7 62 0.0021 35.0 8.1 30 324-353 519-548 (592)
384 3f7f_A Nucleoporin NUP120; nuc 40.4 64 0.0022 35.8 8.2 71 467-542 222-304 (729)
385 2zux_A YESW protein; beta-prop 36.7 4.2E+02 0.014 28.3 25.7 157 416-589 361-536 (591)
386 3of7_A Regulator of chromosome 35.7 3.8E+02 0.013 27.5 26.7 172 271-448 68-284 (473)
387 3no0_A DNA gyrase subunit A; D 35.0 3E+02 0.01 26.2 24.4 193 387-588 35-249 (276)
388 3hx6_A Type 4 fimbrial biogene 30.8 5.2E+02 0.018 27.6 15.5 158 430-588 85-287 (570)
389 1zvt_A Topoisomerase IV subuni 29.5 3.6E+02 0.012 25.3 11.8 119 269-405 33-162 (256)
390 3of7_A Regulator of chromosome 28.4 5E+02 0.017 26.6 24.0 163 270-448 148-340 (473)
391 3b7f_A Glycosyl hydrolase, BNR 24.8 5.1E+02 0.017 25.5 25.9 210 348-572 23-296 (394)
No 1
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.4e-65 Score=546.62 Aligned_cols=416 Identities=55% Similarity=0.991 Sum_probs=297.1
Q ss_pred cCCCCCCccccccccccCCCC-CCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCCCCCccchhhhhhhccccCCc
Q psy4876 108 PNRSAIDTELSHYLLTRDENM-EDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALNSAITSSP 186 (609)
Q Consensus 108 p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (609)
|+|++||||.|+|+|++++.. +..+|.+.+|++++++.+++.+....|||+|+++|+.+|+++++.++++|
T Consensus 2 p~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------- 73 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLY-------- 73 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCCcccccCcchHHHHHHHHhhccccccccceEEeccCCCCCCCcccccCcceec--------
Confidence 899999999999999988766 66788899999999999988877788999999999999999999999888
Q ss_pred cceeeeeeeecccchhhhhhhhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccCCcc
Q psy4876 187 EMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDAPEI 266 (609)
Q Consensus 187 ~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~ap~~ 266 (609)
++ ...+...++..|+||..|+++|++|++
T Consensus 74 --------------------------------------------------~~-~~~~~~~~~~~r~i~~~p~~~l~ap~~ 102 (420)
T 4gga_A 74 --------------------------------------------------SQ-KATPGSSRKTCRYIPSLPDRILDAPEI 102 (420)
T ss_dssp ---------------------------------------------------------------CCCCCSSCSEEEECTTC
T ss_pred --------------------------------------------------cc-ccCCCCccCCCcccCCCCceEEECCCC
Confidence 33 234455667789999999999999999
Q ss_pred CCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 267 QNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 267 ~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.+|||+++|+||++++||+|.|++|+|||+.+ +++..+.++. |...|++|+|+|
T Consensus 103 ~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~t-------------------------g~~~~~~~~~~~~~~V~sv~fsp 157 (420)
T 4gga_A 103 RNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------------------GDILQLLQMEQPGEYISSVAWIK 157 (420)
T ss_dssp CCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCEEEEEECCSTTCCEEEEEECT
T ss_pred cccccceeEEECCCCEEEEEeCCEEEEEECCC-------------------------CCEEEEEEecCCCCcEEEEEECC
Confidence 99999999999999999999999999999999 8887777776 888999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.+|++|+.|+.+.+||.......+..+.+|...++.+.
T Consensus 158 dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999988778888999999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
|+|++.++++++.|+.|++||...+... ...+.....|...|.+++|+|++..++++++|+.|++|++||+.+++++.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~--~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSC--SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeecccccc--ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 9999999999999999999999877432 24566778899999999999999999999888999999999999999999
Q ss_pred EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 506 SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 506 ~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+..+..+.++.|+++++.+++++|+.|+.|+|||+++++++..+.+|.+.|++++|+|||.+|+||+.|++|+|||+++
T Consensus 316 ~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 316 AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred eeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999999999999999999998999999999999999999999999999999999999999999999999999998
Q ss_pred Cccchhhhhh-cccccccccccCCC
Q psy4876 586 KVKSKKKEIK-NNASKFNSMFNSIR 609 (609)
Q Consensus 586 ~~~~~k~~~~-~~~~~~~~~~~~i~ 609 (609)
..+.++++.. ........++++||
T Consensus 396 ~~~~~~~~~~~~~~~~~s~~~~gir 420 (420)
T 4gga_A 396 LDPARRREREKASAAKSSLIHQGIR 420 (420)
T ss_dssp SSCC---------------------
T ss_pred CCccchhhhccCCccccccCCCCCC
Confidence 8777666553 33344455678887
No 2
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-53 Score=455.49 Aligned_cols=385 Identities=42% Similarity=0.789 Sum_probs=298.4
Q ss_pred CccccCCCCCCccccccccccCCCCCCCCccHHHHHHHHHhHhcCCCCCCceEEeecCCCCCCCCCccchhhhhhhcccc
Q psy4876 104 DRYIPNRSAIDTELSHYLLTRDENMEDLSPSEREKRKAMSELVHGKDIQKSRVLAFQNKAPPPPDGYQNSLKVALNSAIT 183 (609)
Q Consensus 104 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (609)
|||||+|+ |||.|||+++++. ...+|+++|++.+.-.- +.|||.|..+||... ....+...|
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~r~l~~~~~~~~~~--~~~~~~~~~----- 62 (401)
T 4aez_A 1 DRFIPSRP--NTANAFVNSISSD-------VPFDYSESVAEACGFDL--NTRVLAFKLDAPEAK--KPVDLRTQH----- 62 (401)
T ss_dssp ----------------------------------------------C--CEEEEEECSCCCCCC--CCCC----------
T ss_pred CCcCCCch--hhhHHHHhhcCCc-------chHHHHHHHHHHcCCCc--cCcEEeeCCCCCCCc--Ccccchhhc-----
Confidence 89999999 9999999997763 23579999999985332 579999997665432 233344444
Q ss_pred CCccceeeeeeeecccchhhhhhhhhhHHhhhhhhheeeeccCCcchhhhhhccCCCCCCCCCCCCccccCCCccccccC
Q psy4876 184 SSPEMKIWKISVHQNVKSVKLCQNLFMERIFKSLEYLLFKIKPLPHLMAIKILSNTSKTPMGSKPTSRYIPLTADRILDA 263 (609)
Q Consensus 184 ~~~~~~~~~~~v~~~~~~~~l~~~~~~e~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~r~i~~~p~~il~a 263 (609)
.+ ...|.. ....|.++..|++++++
T Consensus 63 -----------------------------------------------------~~-~~~~~~-~~~~r~~~~~p~~~~~~ 87 (401)
T 4aez_A 63 -----------------------------------------------------NR-PQRPVV-TPAKRRFNTTPERVLDA 87 (401)
T ss_dssp -------------------------------------------------------------------CCCCCSCSEEEEC
T ss_pred -----------------------------------------------------cc-ccCCcc-ccccCcCCCCcceeeeC
Confidence 11 111211 24568899999999999
Q ss_pred CccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE
Q psy4876 264 PEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW 343 (609)
Q Consensus 264 p~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~ 343 (609)
|+..+++++++++|+++.+++++.|+.|++||+.+ +.........|...|++++|
T Consensus 88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~-------------------------~~~~~~~~~~~~~~v~~v~~ 142 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADS-------------------------GSVSALAETDESTYVASVKW 142 (401)
T ss_dssp TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCEEEEEECCTTCCEEEEEE
T ss_pred CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCC-------------------------CcEeEeeecCCCCCEEEEEE
Confidence 99999999999999999999999999999999998 77666666668899999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||++.....+..+.+|...|.+
T Consensus 143 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 222 (401)
T 4aez_A 143 SHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG 222 (401)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred CCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999666778889999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|++.+|++|+.|+.|++||++++ .++..+..|...|.+++|+|++..++++|+|+.|+.|++||+.++++
T Consensus 223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 223 LAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 999999999999999999999999987 77888889999999999999999999998777899999999999999
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--EEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV--AELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
+..+..+..+.+++|+++++++++++|+.||.|+|||+.++... ..+.+|...|.+++|+|+|.+|++++.||.|++|
T Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw 376 (401)
T 4aez_A 297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376 (401)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999988889999999999986544 4567999999999999999999999999999999
Q ss_pred EcCCCccchhh
Q psy4876 582 KIFEKVKSKKK 592 (609)
Q Consensus 582 dl~~~~~~~k~ 592 (609)
++.+++...+.
T Consensus 377 ~~~~~~~~~~~ 387 (401)
T 4aez_A 377 RVYDGDHVKRP 387 (401)
T ss_dssp ECCC-------
T ss_pred ECCCCcccccc
Confidence 99988766543
No 3
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5e-48 Score=395.38 Aligned_cols=315 Identities=63% Similarity=1.123 Sum_probs=290.9
Q ss_pred CCCccccCCCccccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce
Q psy4876 247 KPTSRYIPLTADRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI 326 (609)
Q Consensus 247 ~~~~r~i~~~p~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (609)
++..|++|..|+++|++|++.+|||+++|+||++++||+|.|++|+|||+.+ ++.
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~t-------------------------g~~ 57 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------------------GDI 57 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTT-------------------------CCE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCC-------------------------CCE
Confidence 4567999999999999999999999999999999999999999999999998 777
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcC
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~ 405 (609)
..+.++. |...|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...+.++.+++.++++++.++.+.+|+..
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp EEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecC
Confidence 7777766 888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.....+..+.+|...+..+.|++++++|++++.|+.|++||+++++.. .........+.+.|.+++++|++..++.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG--WVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB--SCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc--ccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 887788889999999999999999999999999999999999887432 134556667889999999999999998877
Q ss_pred eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCC
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPD 565 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spd 565 (609)
+|+.++.|++||...............+..+.|++++..+++++|..|+.|+|||+.+++++..+.+|.+.|++++|+||
T Consensus 216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spd 295 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPD 295 (318)
T ss_dssp ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 77899999999999999998888889999999999999999998889999999999999999999999999999999999
Q ss_pred CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 566 ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 566 g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|++|+||+.||+|+|||+++.++
T Consensus 296 g~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 296 GATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp SSCEEEEETTTEEEEECCSCCCC
T ss_pred CCEEEEEecCCeEEEEECCCCCC
Confidence 99999999999999999987653
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.6e-41 Score=360.56 Aligned_cols=278 Identities=24% Similarity=0.401 Sum_probs=252.4
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+|||+.+ +... ..+. |.+.|.+++|+|
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-------------------------~~~~--~~l~~h~~~V~~v~~~~ 160 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYET-------------------------GDFE--RTLKGHTDSVQDISFDH 160 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTT-------------------------CCCC--EEECCCSSCEEEEEECT
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------CcEE--EEEeccCCcEEEEEEcC
Confidence 3469999999986 77788999999999988 5433 3445 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||++++ ..+..+.+|...|.+
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRM 239 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeCCCccEEE
Confidence 9999999999999999999999999999999999999999 5789999999999999999987 478889999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC-------------------CcEEEE
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS-------------------PNVLAS 484 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-------------------~~llas 484 (609)
++|+|+|.+|++|+.|+.|++||+.++ .....+.+|...|.+++|+|++ ..++++
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999999999999999999999987 6778889999999999999973 246777
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
|+ .|+.|++||++++.++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+++++..+.+|...|++++|+
T Consensus 314 gs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~--s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~ 389 (410)
T 1vyh_C 314 GS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC--ADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 389 (410)
T ss_dssp EE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE--ETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC
T ss_pred Ee--CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc
Confidence 64 8999999999999999988765 479999999999999984 489999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCCEEEEEcC
Q psy4876 564 PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|++.+|++|+.|++|+||++.
T Consensus 390 ~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 390 KTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSSSCEEEEETTSEEEEEC--
T ss_pred CCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999863
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=343.86 Aligned_cols=278 Identities=22% Similarity=0.395 Sum_probs=252.5
Q ss_pred ceeEEEEEecCC----C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEE
Q psy4876 269 DYYLNLIDWSHF----N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSV 341 (609)
Q Consensus 269 ~~~v~~l~wsp~----~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v 341 (609)
+-.|.+|+|+++ + +++++.|++|+||++.. +.......+. |...|.++
T Consensus 32 ~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~-------------------------~~~~~~~~l~gh~~~v~~~ 86 (321)
T 3ow8_A 32 DDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD-------------------------ERLDLQWSLEGHQLGVVSV 86 (321)
T ss_dssp SSCEEEEEEC-------CEEEEEETTSCEEEEEEET-------------------------TEEEEEEEECCCSSCEEEE
T ss_pred CCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC-------------------------CCeeeeeeeccCCCCEEEE
Confidence 446899999874 2 77799999999999977 5555556666 99999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+|++++.++++|+.|+.|+|||+.+++.+..+..|...+.+++| ++.+|++|+.||.|++||+..+. ....+..|..
T Consensus 87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~ 165 (321)
T 3ow8_A 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGK 165 (321)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSS
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCc
Confidence 99999999999999999999999999999999999999999999 57899999999999999999874 6677888999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|.+++|+|+|++|++|+.||.|++||++++ +.+..+.+|...|.+++|+|++. +|++| +.|+.|++||++
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~spd~~-~l~s~--s~dg~i~iwd~~ 236 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTFSPDSQ-LLVTA--SDDGYIKIYDVQ 236 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEECTTSC-EEEEE--CTTSCEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEEcCCCC-EEEEE--cCCCeEEEEECC
Confidence 9999999999999999999999999999988 78889999999999999999885 66676 489999999999
Q ss_pred CCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 500 SGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 500 t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+++++..+..+ ..|.+++|+|++.+|+++ +.|+.|+|||+.+++++..+.+|.+.|.+++|+|++.+|++++.|++|
T Consensus 237 ~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~--s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i 314 (321)
T 3ow8_A 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSS--SSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEI 314 (321)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCE
T ss_pred CcceeEEEcCCCCceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 99999888766 479999999999999984 489999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q psy4876 579 RLWKI 583 (609)
Q Consensus 579 ~iWdl 583 (609)
+|||+
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99997
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-40 Score=342.13 Aligned_cols=274 Identities=17% Similarity=0.363 Sum_probs=246.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|+|||+.+ +.. +..+. |...|.+++|+|+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-------------------------~~~--~~~~~~~~~~v~~~~~s~~ 108 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-------------------------TNK--VHAIPLRSSWVMTCAYAPS 108 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTT-------------------------CCE--EEEEECSSSCEEEEEECTT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCC-------------------------CCc--ceEeecCCccEEEEEECCC
Confidence 458999999986 77799999999999987 443 33444 8889999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
|++|++|+.|+.|++||+.++ .....+.+|...|.++.| ++..+++++.||.|++||+.++ ..+..+.+|...|
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~-~~~~~~~~h~~~v 187 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDV 187 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCE
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCC-cEEEEEcCCCCce
Confidence 999999999999999999865 456778899999999999 4567999999999999999987 5788899999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.+++|+|++++|++|+.|+.|++||++++ ..+..+.+|...|.+++|+|++. ++++|+ .|+.|++||++++
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~d~~v~iwd~~~~ 258 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAICFFPNGN-AFATGS--DDATCRLFDLRAD 258 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEETTTT
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEEEEcCCCC-EEEEEc--CCCcEEEEECCCC
Confidence 99999999999999999999999999988 77888999999999999999884 666664 8999999999999
Q ss_pred ceeEEEcCCC---CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 502 ACLDSIDTKS---QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 502 ~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
+.+..+.+.. .|.+++|+|+++++++ |+.|+.|+|||+.++..+..+.+|.+.|.+++|+|+|.+|++|+.|++|
T Consensus 259 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 259 QELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred cEEEEEccCCcccceEEEEECCCCCEEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 8888776543 7999999999999999 5589999999999999999999999999999999999999999999999
Q ss_pred EEEE
Q psy4876 579 RLWK 582 (609)
Q Consensus 579 ~iWd 582 (609)
+|||
T Consensus 337 ~iWd 340 (340)
T 1got_B 337 KIWN 340 (340)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-39 Score=337.89 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=232.9
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
-.|.+++|+||| +|+++.|+++++||... ..+... ............+.+...|.+++|+|++
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSL-------WLFKDP--------CAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEE-------EEESSG--------GGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeecee-------eeeccc--------cccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 358999999997 77777798999997432 000000 0000011112223367889999999985
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEE----ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRT----MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~----l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
.|++|+.||.|+|||+.+++.+.. +.+|...|.+++| ++.+|++|+.||+|++||+.++ ..+..+.+|...|.
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEE
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEEcCcCCceE
Confidence 678999999999999998875443 4589999999999 5799999999999999999987 58889999999999
Q ss_pred EEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 423 GLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 423 ~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+++|++++. +|++|+.|+.|++||++++ +++..+. .|...+.+++|+|++..++++|+ .|+.|++||++
T Consensus 174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~ 245 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCSEDNRILLWDTRCP------KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTK 245 (344)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTSS------SCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESC
T ss_pred EEEecCCCCCceeeecccccccccccccc------ceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECC
Confidence 999999874 7899999999999999988 5555553 45567999999998888999874 89999999999
Q ss_pred CCceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC-EEEEEECCC
Q psy4876 500 SGACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET-TVLSAGADE 576 (609)
Q Consensus 500 t~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg 576 (609)
+++++..+..+ ..|.+++|+|++. +|++ |+.|++|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.|+
T Consensus 246 ~~~~~~~~~~h~~~v~~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~ 322 (344)
T 4gqb_B 246 STSCVLSSAVHSQCVTGLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDH 322 (344)
T ss_dssp C--CCEEEECCSSCEEEEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCC
Confidence 99999999866 5899999999985 5666 458999999999988755 5789999999999999986 677999999
Q ss_pred CEEEEEcCCCc
Q psy4876 577 TLRLWKIFEKV 587 (609)
Q Consensus 577 ~I~iWdl~~~~ 587 (609)
+|++|++.+..
T Consensus 323 ~v~~w~v~~~~ 333 (344)
T 4gqb_B 323 QVVHHVVPTEP 333 (344)
T ss_dssp CEEEEECCC--
T ss_pred eEEEEECCCCC
Confidence 99999997654
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-38 Score=326.77 Aligned_cols=282 Identities=19% Similarity=0.315 Sum_probs=246.1
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++|+|+|++ +++++.|++|++|++..... .....+..+. |...|.+++|+
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~~~~s 74 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ----------------------KFGVPVRSFKGHSHIVQDCTLT 74 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT----------------------EEEEEEEEEECCSSCEEEEEEC
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCc----------------------cccccceEEeCCcccEEEEEEC
Confidence 3458999999853 67799999999999865100 1123455566 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||++. ..+..+.+|...|.
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVS 152 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEE
Confidence 99999999999999999999999999999999999999999 468999999999999999975 36788899999999
Q ss_pred EEEEccC------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 423 GLKWSPD------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 423 ~l~~spd------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
+++|+|. +.+|++++.|+.|++||++.. +....+.+|...|.+++|+|++. +|++|+ .|+.|++|
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~sp~g~-~l~s~~--~dg~i~iw 223 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF------QIEADFIGHNSNINTLTASPDGT-LIASAG--KDGEIMLW 223 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTT------EEEEEECCCCSCEEEEEECTTSS-EEEEEE--TTCEEEEE
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc------hhheeecCCCCcEEEEEEcCCCC-EEEEEe--CCCeEEEE
Confidence 9999984 458999999999999999987 67788899999999999999985 666664 89999999
Q ss_pred ECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--------CCCCEEEEEEeCCCCE
Q psy4876 497 NVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--------HSARVLNLAMSPDETT 568 (609)
Q Consensus 497 d~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~ 568 (609)
|+.+++++..+..+..+.+++|+|++.+++++. ++.+++|++.....+..+.. |...|.+++|+|||++
T Consensus 224 d~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 300 (319)
T 3frx_A 224 NLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQT 300 (319)
T ss_dssp ETTTTEEEEEEECCSCEEEEEECSSSSEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSE
T ss_pred ECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCE
Confidence 999999999999889999999999999998854 56799999988877776643 4567999999999999
Q ss_pred EEEEECCCCEEEEEcCCC
Q psy4876 569 VLSAGADETLRLWKIFEK 586 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~ 586 (609)
|++|+.||.|+|||+.+.
T Consensus 301 l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEETTSCEEEEEEEEC
T ss_pred EEEeecCceEEEEEEeec
Confidence 999999999999999763
No 9
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-38 Score=332.63 Aligned_cols=276 Identities=20% Similarity=0.373 Sum_probs=244.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
...|++++|+|++ +++++.|+.|+|||..+ +........ |...|.+++|+|+
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-------------------------~~~~~~~~~-~~~~v~~~~~sp~ 117 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-------------------------TNKEHAVTM-PCTWVMACAYAPS 117 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------CCEEEEEEC-SSSCCCEEEECTT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------CCcceEEec-CCCCEEEEEECCC
Confidence 3458999999986 77799999999999887 443333222 7789999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC------eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK------KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|.+||+|+.|+.|++|++... .....+.+|...|.+++| ++..|++++.||+|++||+.++ ..+..+.+|.
T Consensus 118 g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~-~~~~~~~~h~ 196 (354)
T 2pbi_B 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG-QLLQSFHGHG 196 (354)
T ss_dssp SSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-CEEEEEECCS
T ss_pred CCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC-eEEEEEcCCC
Confidence 999999999999999998643 345677789999999999 4679999999999999999987 4788899999
Q ss_pred CCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 419 QEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 419 ~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
..|.+++|+| +|.+|++|+.||.|++||++++ +++..+..|...|.+++|+|++. ++++|+ .|+.|++|
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s--~D~~v~lw 267 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSGD-AFASGS--DDATCRLY 267 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCCC-EEEEEe--CCCeEEEE
Confidence 9999999988 5789999999999999999988 77888999999999999999884 667764 89999999
Q ss_pred ECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 497 NVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 497 d~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
|++++..+..+..+ ..+.+++|+|++.++++ |+.|+.|+|||+.++..+..+.+|.+.|.+++|+|||.+|++|+
T Consensus 268 d~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 268 DLRADREVAIYSKESIIFGASSVDFSLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 99998887777544 36899999999999998 55899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEE
Q psy4876 574 ADETLRLWK 582 (609)
Q Consensus 574 ~Dg~I~iWd 582 (609)
.|++|+||+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999996
No 10
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.5e-38 Score=319.96 Aligned_cols=278 Identities=18% Similarity=0.286 Sum_probs=241.2
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+|+|+|++ +++++.||.|+|||+.+ +. .+..+. |...|.+++|+|++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-------------------------~~--~~~~~~~~~~~v~~~~~~~~~ 67 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYET-------------------------QV--EVRSIQVTETPVRAGKFIARK 67 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------TE--EEEEEECCSSCEEEEEEEGGG
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCC-------------------------Cc--eeEEeeccCCcEEEEEEeCCC
Confidence 58999999997 77789999999999987 43 334455 88899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++|++|+.|+.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||+|++||+++.......+.+|...|.+++
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~ 147 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence 99999999999999999999999999999999999999 4689999999999999999987667788899999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCC-CcEEEEEeccCCCeEEEEECCCCc
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWS-PNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
|+| ++.+|++|+.|+.|++||+... .+...+ ..|...+..++|+|.. ..++++|+ .|+.|++||+++++
T Consensus 148 ~~p~~~~~l~sgs~D~~v~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~ 219 (304)
T 2ynn_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKS 219 (304)
T ss_dssp ECTTCTTEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTE
T ss_pred ECCCCCCEEEEEeCCCeEEEEECCCC------CccceeccCCcCcEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCc
Confidence 999 6889999999999999999876 333333 4566889999998842 35777764 89999999999999
Q ss_pred eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC--EEEEEECCCCEE
Q psy4876 503 CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET--TVLSAGADETLR 579 (609)
Q Consensus 503 ~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~L~s~s~Dg~I~ 579 (609)
++..+..+ ..|.+++|+|++..|++ |+.|+.|+|||..+++.+..+..|...+.+++|+|++. +|++|+ |..+.
T Consensus 220 ~~~~~~~h~~~v~~~~~~p~~~~l~s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~ 296 (304)
T 2ynn_A 220 CVATLEGHMSNVSFAVFHPTLPIIIS--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFT 296 (304)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEE--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEE
T ss_pred cceeeCCCCCCEEEEEECCCCCEEEE--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec-CCceE
Confidence 99999866 58999999999999988 44899999999999999999999999999999999875 466665 55588
Q ss_pred EEEcCCC
Q psy4876 580 LWKIFEK 586 (609)
Q Consensus 580 iWdl~~~ 586 (609)
+|++...
T Consensus 297 ~~~~~~~ 303 (304)
T 2ynn_A 297 VLSLGND 303 (304)
T ss_dssp EEECC--
T ss_pred EEEeccC
Confidence 8887653
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=329.53 Aligned_cols=286 Identities=22% Similarity=0.348 Sum_probs=234.6
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-c-CCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-E-GNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-h~~~V~~v~~spd 346 (609)
.|.+|+|+|++ +++++.|+.|+|||+.+ +.......+ . |...|.+++|+|+
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~-------------------------~~~~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEG-------------------------DSWICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEET-------------------------TEEEEEEEECSSCSSCEEEEEECTT
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCC-------------------------CcceeeeeeccccCCcEEEEEECCC
Confidence 57889999997 66788999999999977 433222222 3 8999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC--eeEEEEccCCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD--HKVALLQNHTQE 420 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~ 420 (609)
|++||+|+.|+.|+|||+..+ +.+..+.+|...|.+++| ++.+|++|+.|+.|++||++... ..+..+.+|...
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~ 152 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCC
Confidence 999999999999999999876 467889999999999999 57899999999999999998754 345678899999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|.+++|+|++.+|++|+.|+.|++||.+.+.. .....+.+|...|.+++|+|++. +|++|+ .|+.|++||...
T Consensus 153 v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~-~l~s~s--~D~~v~iW~~~~ 225 (345)
T 3fm0_A 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDW----VCCATLEGHESTVWSLAFDPSGQ-RLASCS--DDRTVRIWRQYL 225 (345)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEEEETTEE----EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEEecCCCE----EEEEEecCCCCceEEEEECCCCC-EEEEEe--CCCeEEEecccc
Confidence 99999999999999999999999999886521 34577889999999999999985 666664 899999999632
Q ss_pred C---------------ceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------eE-EEEeCCC
Q psy4876 501 G---------------ACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--------KV-AELHGHS 554 (609)
Q Consensus 501 ~---------------~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--------~~-~~l~~h~ 554 (609)
. .++..+. +...|.+++|++++..+++++ .|+.|++|+..... .. ....+|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~ 303 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC--GDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS 303 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE--TTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe--CCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence 2 2334443 345899999999999999854 79999999986542 11 2235799
Q ss_pred CCEEEEEEeCCC-CEEEEEECCCCEEEEEcCCCccch
Q psy4876 555 ARVLNLAMSPDE-TTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 555 ~~V~~l~~spdg-~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..|++++|+|++ .+|++|+.||+|+||++.......
T Consensus 304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp SCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 999999999998 499999999999999998876544
No 12
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.6e-39 Score=339.32 Aligned_cols=281 Identities=17% Similarity=0.349 Sum_probs=244.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|++|+|||+.+ +.. +..+. |...|.+++|+|
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-------------------------~~~--~~~~~~h~~~v~~~~~s~ 118 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALT-------------------------SQK--THAIKLHCPWVMECAFAP 118 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTT-------------------------TEE--EEEEECCCTTCCCCEECT
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------------------------Ccc--ceEEecCCCCEEEEEECC
Confidence 3468999999986 77899999999999987 443 33444 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCe-------eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEE-
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKK-------KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALL- 414 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~-------~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~- 414 (609)
+|++||+|+.|+.|+|||+.+.. ....+.+|...|.++.|. +..|++|+.|++|++||+.++. .+..+
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~ 197 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ-RISIFG 197 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC-EEEEEC
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc-EEEEee
Confidence 99999999999999999987532 345678999999999994 4679999999999999999874 55555
Q ss_pred ----ccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 415 ----QNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 415 ----~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+|...|.+++|++ ++.+|++|+.|+.|++||++... ..+..+.+|...|.+++|+|++. +|++| +.
T Consensus 198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~-~l~s~--s~ 269 (380)
T 3iz6_a 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-----RAVRTYHGHEGDINSVKFFPDGQ-RFGTG--SD 269 (380)
T ss_dssp CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-----CCCEEECCCSSCCCEEEECTTSS-EEEEE--CS
T ss_pred cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-----cceEEECCcCCCeEEEEEecCCC-eEEEE--cC
Confidence 57999999999987 88999999999999999998442 57788899999999999999884 66676 48
Q ss_pred CCeEEEEECCCCceeEEEcCCC--------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE----eCCCCCE
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS--------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL----HGHSARV 557 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~--------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l----~~h~~~V 557 (609)
|+.|++||+++++++..+..+. .+.+++|+|+|+++++ |+.||.|+|||...++.+..+ .+|.+.|
T Consensus 270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCce
Confidence 9999999999999988876432 3899999999999998 668999999999999988877 6799999
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.+++|+|||.+|++|+.|++|+||++....
T Consensus 348 ~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 348 SCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 999999999999999999999999998653
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-38 Score=333.35 Aligned_cols=288 Identities=17% Similarity=0.263 Sum_probs=227.6
Q ss_pred ceeEEEEEecCCC-eE-EEEc------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEE
Q psy4876 269 DYYLNLIDWSHFN-VL-AVAL------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCS 340 (609)
Q Consensus 269 ~~~v~~l~wsp~~-ll-a~s~------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~ 340 (609)
+..|++|+||||| +| +++. |+.|++|+..+... ..........|...|++
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~----------------------~~~~~~~~~~~~~~V~~ 99 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP----------------------NESLCTAGVQTEAGVTD 99 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC-------------------------CGGGCSEEEECSSCEEE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc----------------------ceeEecccCCCCCCEEE
Confidence 4569999999998 44 4554 67899998876210 00111122238889999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeE----EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKC----RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~----~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
++|+|++.+| +++.||.|+|||+.+++.. ....+|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+
T Consensus 100 ~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~-~~~~~~ 177 (357)
T 4g56_B 100 VAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-AVLKSY 177 (357)
T ss_dssp EEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT-EEEEEE
T ss_pred EEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-cEEEEE
Confidence 9999998655 5788999999999887644 344589999999999 5789999999999999999987 578889
Q ss_pred ccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 415 QNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
.+|...|.+++|++++. ++++++.|+.|++||+++++. .....+..|...+.+++|+|++..++++|+ .|+.|
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i 251 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNV 251 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCE
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcccceEEEee--cccce
Confidence 99999999999999875 789999999999999998732 122234457788999999999888999874 89999
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC-CCCEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP-DETTVL 570 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~ 570 (609)
++||+++++++..+..+ ..|.+++|+|++. +|++ |+.|+.|+|||+.+++.+..+ +|.+.|++|+|+| |+.+|+
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~ 328 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT 328 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE
Confidence 99999999999998765 5899999999985 5666 448999999999998877654 8999999999998 899999
Q ss_pred EEECCCCEEEEEcCCCccc
Q psy4876 571 SAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~~~~ 589 (609)
+++.||+|++|++....+.
T Consensus 329 s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 329 TVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEETTSCEEEEECC-----
T ss_pred EEcCCCeEEEEECCCCCcc
Confidence 9999999999999765443
No 14
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.4e-36 Score=311.27 Aligned_cols=277 Identities=24% Similarity=0.422 Sum_probs=240.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+||++.+ +... ..+. |...|.+++|+|
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-------------------------~~~~--~~~~~h~~~v~~~~~~~ 75 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD-------------------------GKFE--KTISGHKLGISDVAWSS 75 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------CCEE--EEECCCSSCEEEEEECT
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-------------------------cccc--hhhccCCCceEEEEEcC
Confidence 3468999999986 67788999999999987 4433 3344 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||++++ ..+..+..|...|.+
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-KCLKTLPAHSDPVSA 154 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEE
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-EEEEEecCCCCcEEE
Confidence 9999999999999999999999999999999999999999 4789999999999999999987 477888999999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
++|+|++++|++|+.||.|++||++++ +.+..+ ..+...+..++|+|++.. +++++ .|+.|++||+.+++
T Consensus 155 ~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 155 VHFNRDGSLIVSSSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKY-ILAAT--LDNTLKLWDYSKGK 225 (312)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCE-EEEEc--CCCeEEEEECCCCc
Confidence 999999999999999999999999987 455544 456678999999999864 45543 79999999999999
Q ss_pred eeEEEcCCC-C---eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE--CCC
Q psy4876 503 CLDSIDTKS-Q---VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG--ADE 576 (609)
Q Consensus 503 ~~~~~~~~~-~---v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s--~Dg 576 (609)
++..+..+. . +......+++.++++ |+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~ 303 (312)
T 4ery_A 226 CLKTYTGHKNEKYCIFANFSVTGGKWIVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDK 303 (312)
T ss_dssp EEEEECSSCCSSSCCCEEEECSSSCEEEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTC
T ss_pred EEEEEEecCCceEEEEEEEEeCCCcEEEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCc
Confidence 998887653 1 233333466777777 66899999999999999999999999999999999999999997 699
Q ss_pred CEEEEEcC
Q psy4876 577 TLRLWKIF 584 (609)
Q Consensus 577 ~I~iWdl~ 584 (609)
+|++|+..
T Consensus 304 ~i~~W~~d 311 (312)
T 4ery_A 304 TIKLWKSD 311 (312)
T ss_dssp CEEEEECC
T ss_pred cEEEecCC
Confidence 99999964
No 15
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4e-37 Score=315.27 Aligned_cols=252 Identities=20% Similarity=0.308 Sum_probs=226.6
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~ 406 (609)
.++. |.+.|.+++|+|++.+|++|+.||.|+|||+.++..+..+..|...|.+++| ++++|++|+.|+.|++||+.+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 3455 8999999999999999999999999999999999999999999999999999 679999999999999999998
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+ ..+..+.+|...|.+++|+|++.+|++|+.|++|++||++++. .....+.+|...|.+++|+|.+..++++|+
T Consensus 87 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 87 G-EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp C-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-----EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred C-cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-----chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 7 4778899999999999999999999999999999999998762 355678899999999999997667888875
Q ss_pred ccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNS--DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
.|+.|++||+.++.....+.. ...+..+.|++ ++.+|++ |+.|+.|+|||+.+++++..+.+|...|.+++|
T Consensus 161 --~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp --TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred --CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 899999999998877666643 35788999987 6678887 458999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+|++.+|++|+.||+|+|||+.+....+.
T Consensus 237 ~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~ 265 (304)
T 2ynn_A 237 HPTLPIIISGSEDGTLKIWNSSTYKVEKT 265 (304)
T ss_dssp CSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcCCCeEEEEECCCCceeee
Confidence 99999999999999999999988775544
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-36 Score=323.57 Aligned_cols=297 Identities=20% Similarity=0.328 Sum_probs=234.9
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|++++|+|++ +|+.+.++.++||++.++.... .+....... .+...........+...|.+++|+|+|
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~---~l~~~~~~~-----~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVA---RLSDDSAAN-----KDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEE---EECC----------------------CCCCBEEEEEECTTS
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEE---EecCccccc-----cccccccccccCCCceeEEEEEECCCC
Confidence 3458899999997 7777889999999998732110 000000000 000000000000134469999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|++|++||++++. ....+. +...+.+++
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLTLS-IEDGVTTVA 213 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEEEE-CSSCEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEEEE-cCCCcEEEE
Confidence 99999999999999999999999999999999999999 57899999999999999999873 444444 667899999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
|+| ++++|++|+.|+.|++||++++ ..+..+ .+|...|.+++|+|++. ++++|+ .|+.|++||
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s--~d~~v~~wd 284 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVFTRDGQ-SVVSGS--LDRSVKLWN 284 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEE
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEECCCCC-EEEEEe--CCCEEEEEE
Confidence 999 9999999999999999999987 444444 57999999999999985 566663 899999999
Q ss_pred CCCC------------ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 498 VSSG------------ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 498 ~~t~------------~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
+++. .+...+..+ ..|.+++|++++.+|++ |+.|+.|++||..+++.+..+.+|...|.+++|++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 9763 344455444 57999999999999998 45899999999999999999999999999999986
Q ss_pred ------CCCEEEEEECCCCEEEEEcCCC
Q psy4876 565 ------DETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 565 ------dg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
++.+|++|+.||+|+||++...
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CcCcCCCCCEEEEECCCCcEEECccccc
Confidence 6889999999999999998653
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-37 Score=318.33 Aligned_cols=282 Identities=21% Similarity=0.306 Sum_probs=225.2
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee--c-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL--E-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-h~~~V~~v~~spd 346 (609)
-.|.+++|+++-+++++.|+.|+|||+.. +....+..+ . |...|.+++|+|+
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~-------------------------~~~~~~~~~~~~~h~~~v~~v~~sp~ 69 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKY-------------------------DDFTLIDVLDETAHKKAIRSVAWRPH 69 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSS-------------------------SCCEEEEEECTTCCCSCEEEEEECTT
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecC-------------------------CCeEEEEEEecCCccCCEEEEEECCC
Confidence 35889999999667788999999999987 433333333 3 8899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC---eeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSA-------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD---HKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~---~~~~~~ 414 (609)
+++||+|+.|+.|+|||+.. .+.+..+.+|...|.+++| ++.+|++|+.|++|++||++... ..+..+
T Consensus 70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~ 149 (330)
T 2hes_X 70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVL 149 (330)
T ss_dssp SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEe
Confidence 99999999999999999853 3567889999999999999 57899999999999999995332 456778
Q ss_pred ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-cEEEEEeccCCCeE
Q psy4876 415 QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP-NVLASGGGTADRHI 493 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~llasggGs~Dg~I 493 (609)
.+|...|.+++|+|++.+|++|+.|++|++||...+. ..++..+.+|...|.+++|+|++. .++++|+ .|+.|
T Consensus 150 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v 223 (330)
T 2hes_X 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTV 223 (330)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeE
Confidence 8999999999999999999999999999999987542 146788899999999999999842 4677764 89999
Q ss_pred EEEECCCC--------ceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEE-EeCCCC-CEEE
Q psy4876 494 YFWNVSSG--------ACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--KVAE-LHGHSA-RVLN 559 (609)
Q Consensus 494 ~iwd~~t~--------~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--~~~~-l~~h~~-~V~~ 559 (609)
++||+..+ .+...+. +...|.+++|++++ .|++ ++.|+.|+||+..++. .+.. +.+|.. .|.+
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~ 300 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINV 300 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEE
T ss_pred EEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEE
Confidence 99999754 3444443 34589999999665 6666 4489999999988774 3333 357887 8999
Q ss_pred EEEeC--CCCEEEEEECCCCEEEEEcCC
Q psy4876 560 LAMSP--DETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 560 l~~sp--dg~~L~s~s~Dg~I~iWdl~~ 585 (609)
++|+| ++.+|++|+.||+|+||++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.1e-36 Score=317.44 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=233.9
Q ss_pred eeEEEEEe-----cC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEE
Q psy4876 270 YYLNLIDW-----SH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCS 340 (609)
Q Consensus 270 ~~v~~l~w-----sp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~ 340 (609)
..|++++| ++ ++ +++++.|++|+|||+....... ........+. |...|.+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------------~~~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------------YFGIPHKALTGHNHFVSD 81 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------------BSEEEEEEECCCSSCEEE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------------ccccccchhccCCCceEE
Confidence 46899999 66 54 7779999999999997621100 0123344555 8999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc---
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ--- 415 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--- 415 (609)
++|+|++.+|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.|+.|++||+... ......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~ 159 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSSAEKE 159 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEECCTTT
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeeeeccc
Confidence 999999999999999999999999999999999999999999999 5789999999999999999843 333333
Q ss_pred cCCCCeEEEEEccCC----------CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 416 NHTQEVCGLKWSPDG----------RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 ~h~~~V~~l~~spdg----------~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.|...|.+++|+|++ .+|++++.|+.|++||.. . .....+.+|...|.+++|+|++. +|++|
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~------~~~~~~~~h~~~v~~~~~s~~g~-~l~sg 231 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F------QIRYTFKAHESNVNHLSISPNGK-YIATG 231 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T------EEEEEEECCSSCEEEEEECTTSS-EEEEE
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C------ceeEEEcCccccceEEEECCCCC-EEEEE
Confidence 788999999999987 799999999999999943 3 56678889999999999999985 66666
Q ss_pred eccCCCeEEEEECC-CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EEe-----------
Q psy4876 486 GGTADRHIYFWNVS-SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--ELH----------- 551 (609)
Q Consensus 486 gGs~Dg~I~iwd~~-t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l~----------- 551 (609)
+ .|+.|++||+. .......+.....|.+++|+|++.++++ | .|+.|++|++.++.... .+.
T Consensus 232 s--~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 232 G--KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp E--TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred c--CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 4 89999999994 4555666666778999999999988765 3 48889999998765433 443
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+|...|.+++|+|+|++|++|+.||+|++|++.++
T Consensus 307 ~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 68889999999999999999999999999998764
No 19
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4e-36 Score=309.93 Aligned_cols=285 Identities=22% Similarity=0.335 Sum_probs=246.2
Q ss_pred ceeEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
.-.|++|+|+|+ + +++++.|++|+|||+..... ........+. |...|.+++|+
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~----------------------~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET----------------------NYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS----------------------CSEEEEEEECCCSSCEEEEEEC
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc----------------------ccceeeEEEeCCCCCEEEEEEC
Confidence 446999999997 3 56689999999999986211 1123444555 89999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
|+|++|++|+.||.|++|+............+...+..+.+ ++.+|++|+.|+.+++||+...........+|...|.
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~ 175 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVS 175 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEE
T ss_pred CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCccc
Confidence 99999999999999999999999998888888888888888 5789999999999999999877555566778999999
Q ss_pred EEEEccCC--CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSPDG--RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~spdg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.++|++++ .++++++.|+.|++||++++ +.+..+.+|...|.+++|+|++. +|++|+ .|+.|++||+.+
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~Dg~i~iwd~~~ 246 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDGS-LCASGG--KDGQAMLWDLNE 246 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTCEEEEEETTT
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCCC-EEEEEe--CCCeEEEEEecc
Confidence 99999864 57899999999999999988 78888999999999999999885 666664 899999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---------CCCCCEEEEEEeCCCCEEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---------GHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~L~s 571 (609)
++++..+..+..+.++.|+|++.+++.+ .|+.|+|||+..+..+..+. +|...|++++|+|||++|++
T Consensus 247 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGDIINALCFSPNRYWLCAA---TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSSCEEEEEECSSSSEEEEE---ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCceEEeeecCCCCceeecc---CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 9999999999999999999998766543 59999999999887766653 68889999999999999999
Q ss_pred EECCCCEEEEEcCCCc
Q psy4876 572 AGADETLRLWKIFEKV 587 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~ 587 (609)
|+.||.|+|||+.++.
T Consensus 324 gs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 324 GYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EETTSCEEEEEEEC--
T ss_pred EeCCCEEEEEeCCCcC
Confidence 9999999999998875
No 20
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-36 Score=310.20 Aligned_cols=286 Identities=16% Similarity=0.222 Sum_probs=250.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|+|||+.+ +. .+..+. |...|.+++|+|
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-------------------------GE--RLGTLDGHTGTIWSIDVDC 84 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTT-------------------------CC--EEEEECCCSSCEEEEEECT
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------------ch--hhhhhhhcCCcEEEEEEcC
Confidence 3458999999986 66688899999999987 44 344555 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC-----CeEEEEEcCCCCe---------
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-----GNIVHHDVRSRDH--------- 409 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-----g~I~iwd~~~~~~--------- 409 (609)
++++|++++.||.|++||+.+++.+..+. |...|.+++| ++.+|++++.+ |.|.+||+.....
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 99999999999999999999999998888 8899999999 57899999998 9999999986531
Q ss_pred -eEEEEccCCC--CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 410 -KVALLQNHTQ--EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 410 -~~~~~~~h~~--~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
....+..|.. .+.+++|+|++++|++++.||.|++||+++.. ..+..+..|...|.+++|+|++. +|++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 237 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-----EYVDSIDLHEKSISDMQFSPDLT-YFITSS 237 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-----EEEEEEECCSSCEEEEEECTTSS-EEEEEE
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-----EeEEEEecCCCceeEEEECCCCC-EEEEec
Confidence 3445556666 99999999999999999999999999999831 67888889999999999999885 555553
Q ss_pred ccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--------------eEEEEECCCCceEEEEeC
Q psy4876 487 GTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--------------QLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--------------~I~Iwd~~~~~~~~~l~~ 552 (609)
.|+.|++||+.+++.+..+.....+..++|+|+++++++++ .++ .+++||..+++.+..+.+
T Consensus 238 --~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 238 --RDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGG--GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp --TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEE--CCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred --CCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEee--cCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 79999999999999999999888999999999999999965 455 899999999999999999
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
|...|.+++|+|++++|++++.||.|+||++..+....+.
T Consensus 314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 314 HFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 9999999999999999999999999999999876544433
No 21
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-35 Score=333.43 Aligned_cols=286 Identities=16% Similarity=0.249 Sum_probs=234.1
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++++|+|++ +++++.|++|++||..+ ++ .+..+. |...|.+++|+
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-------------------------~~--~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------------------------FK--FKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-------------------------BE--EEEEECCCSSCEEEEEEC
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-------------------------Ce--EeeeeccccCceEEEEEC
Confidence 3468999999985 67799999999999876 43 344555 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEec-------CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe------
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMD-------GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH------ 409 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~------ 409 (609)
|+|++||+|+.||.|+|||+.+++.+..+. +|...|.+++| ++.+|++++.|++|++||+.++..
T Consensus 200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 999999999999999999999999988884 79999999999 578999999999999999986531
Q ss_pred ------------------------------------eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC
Q psy4876 410 ------------------------------------KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT 453 (609)
Q Consensus 410 ------------------------------------~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~ 453 (609)
....+.+|...|.+++|+|+|++|++++.|+.|++||+.++...
T Consensus 280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 12345689999999999999999999999999999999865321
Q ss_pred CCc-----cc----------------------------------------------------------------------
Q psy4876 454 FST-----QP---------------------------------------------------------------------- 458 (609)
Q Consensus 454 ~~~-----~~---------------------------------------------------------------------- 458 (609)
... ..
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~ 439 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 439 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEET
T ss_pred eecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeC
Confidence 000 00
Q ss_pred --eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--eEEEcCCCCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 459 --IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--LDSIDTKSQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 459 --~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
+..+ .|...+.+++|+|++. ++++|+ .|+.|++||+.++.. +....+...|.+++|+|+|++|+++ ..|+
T Consensus 440 ~~~~~~-~~~~~v~~va~spdg~-~lasgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~--s~d~ 513 (611)
T 1nr0_A 440 GKLTEV-PISYNSSCVALSNDKQ-FVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT--DQSR 513 (611)
T ss_dssp TEEEEE-ECSSCEEEEEECTTSC-EEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEE--ETTS
T ss_pred Cceeee-ecCCCceEEEEeCCCC-EEEEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEE--cCCC
Confidence 0000 1345678999999985 667764 899999999987654 3444566789999999999999985 4899
Q ss_pred eEEEEECCC-CceEEE--EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 535 QLIIWKYPS-LVKVAE--LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 535 ~I~Iwd~~~-~~~~~~--l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.|++|++.+ ++.+.. +.+|...|++++|+|||++|++|+.|++|+||++..+.
T Consensus 514 ~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp CEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred CEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 999999987 555443 33499999999999999999999999999999998755
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=9.2e-36 Score=318.63 Aligned_cols=245 Identities=20% Similarity=0.338 Sum_probs=226.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|.+.|++++|+|++.+|++|+.||.|+|||+.+++....+.+|...|.+++| ++.+|++|+.||+|++||+.+. ..+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-~~~ 185 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF-ECI 185 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS-CEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cee
Confidence 8999999999999999999999999999999999999999999999999999 4789999999999999999886 477
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ .++..+.+|...|.+++|+|++. ++++|+ .|+
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~g~-~l~s~s--~D~ 256 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMVRPNQDGT-LIASCS--NDQ 256 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTS
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEEEECCCCC-EEEEEc--CCC
Confidence 888999999999999999999999999999999999988 78889999999999999999884 666664 899
Q ss_pred eEEEEECCCCceeEEEcCC-CCeEEEEEcCC--------------------CCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 492 HIYFWNVSSGACLDSIDTK-SQVCALLWNSD--------------------YKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~--------------------g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.|++||+.++++...+..+ ..|.+++|+|+ +.++++ |+.|+.|++||+.++.++..+
T Consensus 257 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~~~~~~~ 334 (410)
T 1vyh_C 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTL 334 (410)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCCceEEEE
Confidence 9999999999999888765 58999999997 556777 558999999999999999999
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
.+|...|.+++|+|+|.+|++|+.|++|++||+.++....
T Consensus 335 ~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 9999999999999999999999999999999998766443
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.1e-35 Score=335.66 Aligned_cols=281 Identities=24% Similarity=0.326 Sum_probs=239.8
Q ss_pred ceeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++|+|++++ +++++.|++|+||++..... ........+. |...|.+++|+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~----------------------~~~~~~~~~~~h~~~v~~v~~s 439 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK----------------------AYGVAQRRLTGHSHFVEDVVLS 439 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT----------------------CSCEEEEEEECCSSCEEEEEEC
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc----------------------ccccccceecCCCCcEEEEEEC
Confidence 3459999999864 66799999999999976210 0112233444 99999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE---ccCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL---QNHTQ 419 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~ 419 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.|++|++||+.... ..... .+|..
T Consensus 440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEGHRD 518 (694)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTSCSS
T ss_pred CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCCCCC
Confidence 99999999999999999999999999999999999999999 57899999999999999987542 22222 46889
Q ss_pred CeEEEEEccCC--CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 420 EVCGLKWSPDG--RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 420 ~V~~l~~spdg--~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
.|.+++|+|++ ..|++|+.|+.|++||++.+ +....+.+|...|.+++|+|++. ++++|+ .|+.|++||
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~------~~~~~~~~h~~~v~~v~~spdg~-~l~sg~--~Dg~i~iwd 589 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC------KLRSTLAGHTGYVSTVAVSPDGS-LCASGG--KDGVVLLWD 589 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSBCEEEE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC------cEEEEEcCCCCCEEEEEEeCCCC-EEEEEe--CCCeEEEEE
Confidence 99999999986 58999999999999999987 67888999999999999999884 666764 899999999
Q ss_pred CCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-------------------CCEE
Q psy4876 498 VSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-------------------ARVL 558 (609)
Q Consensus 498 ~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-------------------~~V~ 558 (609)
+.+++++..+..+..+.+++|+|++.+++++ .++.|+|||+.++..+..+..+. ..++
T Consensus 590 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (694)
T 3dm0_A 590 LAEGKKLYSLEANSVIHALCFSPNRYWLCAA---TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCT 666 (694)
T ss_dssp TTTTEEEECCBCSSCEEEEEECSSSSEEEEE---ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEE
T ss_pred CCCCceEEEecCCCcEEEEEEcCCCcEEEEE---cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEee
Confidence 9999999988888899999999999888774 36779999999998887775432 2378
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
+++|+|||++|++|+.||+|+||++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99999999999999999999999985
No 24
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-35 Score=313.81 Aligned_cols=284 Identities=15% Similarity=0.204 Sum_probs=243.7
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC-
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE- 346 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd- 346 (609)
...|++|+|+|+.+++++.||.|+|||+.+.... .....+..+. |...|.+++|+|+
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCTTCEEEEEEEEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCCCcEEEEEEeccc
Confidence 3468999999965788999999999999872100 0122334444 8999999999999
Q ss_pred ---C---CEEEEEeCCCeEEEEeCCCCee-----EEEecCC-----CCceEEEEec------CCE-EEEEecCCeEEEEE
Q psy4876 347 ---G---YMLGVGTSLGTVQLWDVSAKKK-----CRTMDGH-----DVRVGALAWN------TYI-LSSGSRCGNIVHHD 403 (609)
Q Consensus 347 ---g---~~Lasgs~dg~I~iwd~~~~~~-----~~~l~~h-----~~~V~~l~~~------~~~-L~sgs~dg~I~iwd 403 (609)
+ ++|++++.||.|++||+.+++. +..+..| ...|.+++|+ +.+ |++++.||.|++||
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK 154 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence 9 9999999999999999998887 8889988 5999999998 578 99999999999999
Q ss_pred cCC------CCeeEE-----EE-------ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-
Q psy4876 404 VRS------RDHKVA-----LL-------QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR- 464 (609)
Q Consensus 404 ~~~------~~~~~~-----~~-------~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~- 464 (609)
+.. .. .+. .+ ..|...|.+++|+|++ +|++|+.|+.|++||++++ +.+..+..
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~ 226 (397)
T 1sq9_A 155 FHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL------RPLYNFESQ 226 (397)
T ss_dssp EESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT------EEEEEEECC
T ss_pred CCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC------ceeEEEecc
Confidence 987 43 233 45 4588999999999999 9999999999999999987 77888888
Q ss_pred --C---cccEEEEEEcCCCCcEEEEEeccCC---CeEEEEECCCCceeEEEcC--------------CCCeEEEEEcCCC
Q psy4876 465 --H---QAAVKAIAWCPWSPNVLASGGGTAD---RHIYFWNVSSGACLDSIDT--------------KSQVCALLWNSDY 522 (609)
Q Consensus 465 --h---~~~V~~l~~sp~~~~llasggGs~D---g~I~iwd~~t~~~~~~~~~--------------~~~v~sl~~s~~g 522 (609)
| ...|.+++|+|++. +|++++ .| +.|++||+.+++++..+.. ...|.+++|+|++
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~-~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGS-LLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp C---CCCCCEEEEEECSSTT-EEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred ccccccCCccceEEECCCCC-EEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 8 99999999999985 555553 68 9999999999999998875 4689999999999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEEe------CC---------------CCCEEEEEEeCCC----------CEEEE
Q psy4876 523 KELVSAHGFAQNQLIIWKYPSLVKVAELH------GH---------------SARVLNLAMSPDE----------TTVLS 571 (609)
Q Consensus 523 ~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~------~h---------------~~~V~~l~~spdg----------~~L~s 571 (609)
++|+++ +.|+.|+|||+.+++.+..+. +| ...|.+++|+|+| .+|++
T Consensus 304 ~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s 381 (397)
T 1sq9_A 304 ETLCSA--GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC 381 (397)
T ss_dssp SEEEEE--ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE
T ss_pred CEEEEE--eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE
Confidence 999984 489999999999999999999 88 9999999999998 79999
Q ss_pred EECCCCEEEEEcCCC
Q psy4876 572 AGADETLRLWKIFEK 586 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~ 586 (609)
++.||.|+||++.++
T Consensus 382 ~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 382 VCLDRSIRWFREAGG 396 (397)
T ss_dssp EETTTEEEEEEEEC-
T ss_pred ecCCCcEEEEEcCCC
Confidence 999999999999765
No 25
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.5e-34 Score=297.01 Aligned_cols=281 Identities=21% Similarity=0.287 Sum_probs=238.5
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|.+++|+|++ +++++.|+.|++||+.+.... .....+....|...|.+++|+|++
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~ 109 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK---------------------SPVSQLDCLNRDNYIRSCKLLPDG 109 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC---------------------SCSEEEECSCTTSBEEEEEECTTS
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCCCce---------------------eeeecccccCCCCcEEEEEEcCCC
Confidence 3458899999986 666666999999999872110 111222222388999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++|++++.||.|++||+.+++ ....+..|...|.+++| ++.+|++++.||.|++||+++. ..+..+..|...|.+
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-~~~~~~~~~~~~i~~ 188 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASC 188 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEE
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceeeeeecccCceEE
Confidence 999999999999999999876 67778889999999999 5789999999999999999986 577888899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|++++|++++.|+.|++||++++ +.+..+ .+...+.+++|+|++. +++++ +.|+.|++||+.+++.
T Consensus 189 ~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~~~s~~~~-~l~~~--~~~~~i~~~~~~~~~~ 258 (337)
T 1gxr_A 189 IDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGYCPTGE-WLAVG--MESSNVEVLHVNKPDK 258 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEECTTSS-EEEEE--ETTSCEEEEETTSSCE
T ss_pred EEECCCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEEEECCCCC-EEEEE--cCCCcEEEEECCCCCe
Confidence 999999999999999999999999987 555555 4778899999999985 45555 3799999999999887
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
.....+...+.+++|+|++++++++ ..||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++
T Consensus 259 ~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 259 YQLHLHESCVLSLKFAYCGKWFVST--GKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEcCCccceeEEEECCCCCEEEEe--cCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 6655566799999999999999884 48999999999999888554 58899999999999999999999999999997
Q ss_pred C
Q psy4876 584 F 584 (609)
Q Consensus 584 ~ 584 (609)
.
T Consensus 336 ~ 336 (337)
T 1gxr_A 336 I 336 (337)
T ss_dssp E
T ss_pred e
Confidence 3
No 26
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.4e-35 Score=329.57 Aligned_cols=278 Identities=21% Similarity=0.311 Sum_probs=238.7
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|++++|+|++ +++++.|++|+|||+.+ +.......+. |.+.|.+++|+|+
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~-------------------------~~~~~~~~~~~~~~~v~~v~fs~d 114 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ-------------------------TTHILKTTIPVFSGPVKDISWDSE 114 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSS-------------------------TTCCEEEEEECSSSCEEEEEECTT
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCC-------------------------CcceeeEeecccCCceEEEEECCC
Confidence 358999999997 56688899999999976 4443444555 8899999999999
Q ss_pred CCEEEEEeCC----CeEEEEeCCCCeeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 347 GYMLGVGTSL----GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 347 g~~Lasgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
|++|++++.+ +.|++|| .++....+.+|...|.+++|++ ..|++|+.|++|++||.... .....+.+|..
T Consensus 115 g~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-~~~~~l~~H~~ 191 (611)
T 1nr0_A 115 SKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-KFKSTFGEHTK 191 (611)
T ss_dssp SCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-EEEEEECCCSS
T ss_pred CCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-eEeeeeccccC
Confidence 9999998865 4788887 4567778899999999999953 37999999999999998875 57788999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------CCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------RHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.|.+++|+|+|++||+|+.|++|++||+.++ +.+..+. +|.+.|.+++|+|++. +|++++ .|++
T Consensus 192 ~V~~v~fspdg~~las~s~D~~i~lwd~~~g------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s--~D~~ 262 (611)
T 1nr0_A 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDG------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASAS--ADKT 262 (611)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTC------CEEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEE--TTSE
T ss_pred ceEEEEECCCCCEEEEEECCCcEEEEECCCC------cEeeeeccccccccccCCCEEEEEECCCCC-EEEEEe--CCCe
Confidence 9999999999999999999999999999887 5555553 7999999999999985 566664 8999
Q ss_pred EEEEECCCCceeEEEcCC----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE
Q psy4876 493 IYFWNVSSGACLDSIDTK----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT 568 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 568 (609)
|++||+.+++++..+..+ ..+..+.| ++..++++ ..|+.|++|+...+.....+.+|...|++++|+|||++
T Consensus 263 v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~--s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSI--SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp EEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEE--ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred EEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEE--eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 999999999999888654 24566677 67778774 48999999999999888889999999999999999999
Q ss_pred EEEEECCCCEEEEEcCCCcc
Q psy4876 569 VLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 569 L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|++++.|++|++||+.++..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEEETTSCEEEEETTTCCE
T ss_pred EEEEeCCCcEEEEECCCCce
Confidence 99999999999999987654
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=8.1e-35 Score=323.39 Aligned_cols=268 Identities=25% Similarity=0.465 Sum_probs=237.6
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|++||... ... ..+. |...|.+++|+|+
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-------------------------~~~---~~~~~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------QHL---QTLTGHSSSVWGVAFSPD 355 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------------CEE---EEECCCSSCEEEEEECTT
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-------------------------Cee---EEEeCCCCCEEEEEECCC
Confidence 358899999986 66788899999999876 332 2334 8899999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
|++|++|+.||.|++||. +++.+..+.+|...|.+++| ++.+|++++.|+.|++||... ..+..+.+|...|.++
T Consensus 356 g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEE
Confidence 999999999999999995 56888899999999999999 578999999999999999653 4678889999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|+||+++|++++.|+.|++||.. + +.+..+.+|...|.+++|+|++. +|++++ .|+.|++||. +++++
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~-~------~~~~~~~~~~~~v~~~~~spd~~-~las~~--~d~~i~iw~~-~~~~~ 501 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVRGVAFSPDGQ-TIASAS--DDKTVKLWNR-NGQLL 501 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETT-S------CEEEEEECCSSCEEEEEECTTSC-EEEEEE--TTSEEEEEET-TSCEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECC-C------CEEEEEcCCCCCEEEEEEcCCCC-EEEEEe--CCCEEEEEcC-CCCEE
Confidence 999999999999999999999964 3 57788889999999999999985 566653 8999999995 67888
Q ss_pred EEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 505 DSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 505 ~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+ +++.+..+.+|.+.|++++|+|||++|+|++.|++|++||
T Consensus 502 ~~~~~h~~~v~~l~~s~dg~~l~s~--~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 502 QTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEE--ETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEeCCCCCEEEEEEcCCCCEEEEE--ECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 888765 589999999999999984 48999999996 6788999999999999999999999999999999999997
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-34 Score=293.54 Aligned_cols=280 Identities=18% Similarity=0.198 Sum_probs=238.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++| +++ +++++.||.|++||+.+ +.... .+. |...|.+++|+|
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-------------------------~~~~~--~~~~~~~~v~~~~~~~ 69 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-------------------------QWLGT--VVYTGQGFLNSVCYDS 69 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESS-------------------------SEEEE--EEEECSSCEEEEEEET
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-------------------------CEEEE--EeecCCccEEEEEECC
Confidence 345889999 654 77788999999999976 44332 333 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC---eeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK---KKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
++++|++|+.||.|++|++... +.+..+.+|...|.+++|++.+|++++.||.|++|| . ......+..|...|.
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~ 146 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVW 146 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEE
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCcee
Confidence 9999999999999999998754 667888999999999999999999999999999999 3 357788889999999
Q ss_pred EEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 423 GLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 423 ~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
+++|+| ++.+|++++.|+.|++||.. .....+.. |...|.+++|+|++. +++++ .|+.|++||+++
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~dg~i~i~d~~~ 214 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDGH--FISCS--NDGLIKLVDMHT 214 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETTE--EEEEE--TTSEEEEEETTT
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCCe--EEEcc--CCCeEEEEECCc
Confidence 999998 99999999999999999943 45666666 899999999999885 55553 899999999999
Q ss_pred CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEE
Q psy4876 501 GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLR 579 (609)
Q Consensus 501 ~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~ 579 (609)
++++..+..+ ..+.+++|+|++ .+++ +..|+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|+
T Consensus 215 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 215 GDVLRTYEGHESFVYCIKLLPNG-DIVS--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp CCEEEEEECCSSCEEEEEECTTS-CEEE--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred hhhhhhhhcCCceEEEEEEecCC-CEEE--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 9999998754 589999999999 5666 44899999999999999999999999999999999998 66799999999
Q ss_pred EEEcCCCccchhhhhh
Q psy4876 580 LWKIFEKVKSKKKEIK 595 (609)
Q Consensus 580 iWdl~~~~~~~k~~~~ 595 (609)
+|++.++......+.+
T Consensus 291 iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 291 IFSQEKSRWASEDEIK 306 (313)
T ss_dssp EEESCGGGCCC-----
T ss_pred EEeCCCCceeehhhhh
Confidence 9999987766655543
No 29
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=319.58 Aligned_cols=285 Identities=17% Similarity=0.362 Sum_probs=245.1
Q ss_pred eEEEEEecCCC--eEEE-----------EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce-eeeeeecCCC
Q psy4876 271 YLNLIDWSHFN--VLAV-----------ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI-DHLMDLEGNE 336 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~-----------s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~h~~ 336 (609)
.+.+++|+|++ ++++ +.|+.|+|||+.+ +.. ..+..+.|..
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~ 68 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLA-------------------------ADSEKPIASLQVDS 68 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSS-------------------------GGGCSCSCCCCCSS
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccC-------------------------CCCCcEEEEEecCC
Confidence 47789999985 5554 4789999999987 332 2344445889
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC-
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~- 408 (609)
.|.+++|+|++.+|++|+.||.|+|||+.+ .+.+..+.+|...|.+++|+ +.+|++++.||.|++||+.+..
T Consensus 69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 148 (416)
T 2pm9_A 69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTE 148 (416)
T ss_dssp CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSS
T ss_pred ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcc
Confidence 999999999999999999999999999987 45888999999999999994 6899999999999999998864
Q ss_pred -----eeE--EEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------cccEEEEEE
Q psy4876 409 -----HKV--ALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------QAAVKAIAW 474 (609)
Q Consensus 409 -----~~~--~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~ 474 (609)
... .....|...|.+++|+|+ +.+|++++.|+.|++||++++ +.+..+..+ ...|.+++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~~~~~~~v~~~~~ 222 (416)
T 2pm9_A 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK------KEVIHLSYTSPNSGIKQQLSVVEW 222 (416)
T ss_dssp CTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT------EEEEEECCCCCSSCCCCCEEEEEE
T ss_pred ccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC------CcceEEeccccccccCCceEEEEE
Confidence 221 234679999999999998 789999999999999999987 667777665 789999999
Q ss_pred cCCCCcEEEEEeccCCC---eEEEEECCCC-ceeEEEc--CCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 475 CPWSPNVLASGGGTADR---HIYFWNVSSG-ACLDSID--TKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 475 sp~~~~llasggGs~Dg---~I~iwd~~t~-~~~~~~~--~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+|++..++++++ .|+ .|++||++++ .++..+. +...|.+++|+| ++.+|+++ ..|+.|++||+.+++.+
T Consensus 223 ~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~--~~dg~v~~wd~~~~~~~ 298 (416)
T 2pm9_A 223 HPKNSTRVATAT--GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSS--GRDNTVLLWNPESAEQL 298 (416)
T ss_dssp CSSCTTEEEEEE--CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEE--ESSSEEEEECSSSCCEE
T ss_pred CCCCCCEEEEEE--CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEE--eCCCCEEEeeCCCCccc
Confidence 999888888875 677 9999999986 5666666 446899999999 88898884 48999999999999999
Q ss_pred EEEeCCCCCEEEEEEeCCC-CEEEEEECCCCEEEEEcCCCccch
Q psy4876 548 AELHGHSARVLNLAMSPDE-TTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg-~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+.+|...|.+++|+|++ .+|++++.|+.|+||++.......
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 9999999999999999999 899999999999999998876443
No 30
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=305.74 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=204.6
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee--ee-cCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM--DL-EGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-~h~~~V~~v~~s 344 (609)
+..|++++|+|++ +++++.||.|+|||+.+ ++..... .. .|.+.|++|+|+
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~-------------------------~~~~~~~~~~~~~H~~~V~~v~~s 136 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDE-------------------------NETLIVSKFCKYEHDDIVSTVSVL 136 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECT-------------------------TSSCEEEEEEEECCSSCEEEEEEC
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccC-------------------------CCceeEeeccccCCCCCEEEEEEC
Confidence 3458999999987 77899999999999988 4332222 22 389999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEEEE--ccCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVALL--QNHTQ 419 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~ 419 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ + .+|++|+.||.|++||++++. ....+ ..|..
T Consensus 137 pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~ 215 (344)
T 4gqb_B 137 SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGY 215 (344)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeec
Confidence 999999999999999999999999999999999999999994 3 689999999999999999874 44444 34667
Q ss_pred CeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.+.+++|+| ++++|++|+.||.|++||++++ +++..+.+|...|.+++|+|++..+|++|+ .|+.|+|||+
T Consensus 216 ~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~ 287 (344)
T 4gqb_B 216 LPTSLAWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDS 287 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECT
T ss_pred cceeeeecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEEC
Confidence 899999999 5678999999999999999988 788899999999999999999988888874 8999999999
Q ss_pred CCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 499 SSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 499 ~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.+++++....+...|.+++|+|++..+++. ++.|++|++|++++..
T Consensus 288 ~~~~~~~~~~H~~~V~~v~~sp~~~~llas-~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 288 SLSELFRSQAHRDFVRDATWSPLNHSLLTT-VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp TCCEEEEECCCSSCEEEEEECSSSTTEEEE-EETTSCEEEEECCC--
T ss_pred CCCcEEEEcCCCCCEEEEEEeCCCCeEEEE-EcCCCeEEEEECCCCC
Confidence 999887665566799999999999876644 3489999999998654
No 31
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=299.78 Aligned_cols=249 Identities=23% Similarity=0.386 Sum_probs=222.3
Q ss_pred eeec-CCCCeEEEEEccC----CCEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 330 MDLE-GNENVCSVAWIQE----GYMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
.... |.+.|.+++|+++ +.+|++|+.|+.|+|||+..++. ...+.+|...|.+++| ++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 3344 9999999999985 57999999999999999987653 4578999999999999 468999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
+||+.++ ..+..+..|...+.+++|+|++++|++|+.|+.|++||++++ .....+..|...|.+++|+|++.
T Consensus 106 lWd~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~~~~spdg~- 177 (321)
T 3ow8_A 106 LWDLENG-KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILSIAYSPDGK- 177 (321)
T ss_dssp EEETTTT-EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEEEEECTTSS-
T ss_pred EEECCCC-CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEEEEECCCCC-
Confidence 9999987 577788889999999999999999999999999999999988 67778888999999999999985
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
+|++|+ .|+.|++||+++++++..+..+ ..|.+++|+|++++|++ |+.|+.|+|||+.++..+..+.+|...|.+
T Consensus 178 ~lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 253 (321)
T 3ow8_A 178 YLASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLN 253 (321)
T ss_dssp EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEE
Confidence 566653 8999999999999999999865 48999999999999998 558999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
++|+|++.+|++++.|++|+|||+.++....
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~ 284 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence 9999999999999999999999998876543
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.9e-35 Score=306.42 Aligned_cols=288 Identities=13% Similarity=0.196 Sum_probs=238.3
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|.+++|+|++ +++++.|+.|+|||+.+ +....+..+. |...|.+++|+|+
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSG-------------------------NKWVQVHELKEHNGQVTGVDWAPD 63 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEET-------------------------TEEEEEEEEECCSSCEEEEEEETT
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------------------CcEEeeeeecCCCCcccEEEEeCC
Confidence 358899999996 44566899999999987 5555666666 8999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEE--ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe---eEEEEccCCC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRT--MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH---KVALLQNHTQ 419 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~ 419 (609)
+++|++|+.||.|++||+.+++.... +..|...|.+++| ++.+|++++.||.|++||++.... .......|..
T Consensus 64 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 64 SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp TTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred CCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999999988875444 4679999999999 578999999999999999998652 2333467899
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC------------CCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT------------FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.|.+++|+|++++|++|+.||.|++||++..... .....+..+..|...|.+++|+|++. ++++++
T Consensus 144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~- 221 (372)
T 1k8k_C 144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS-RVAWVS- 221 (372)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSS-EEEEEE-
T ss_pred CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCC-EEEEEe-
Confidence 9999999999999999999999999997522100 01267778889999999999999885 555653
Q ss_pred cCCCeEEEEECCCCceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC--Cc-------------------
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--LV------------------- 545 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--~~------------------- 545 (609)
.|+.|++||+++++++..+..+. .+.+++|+|++.++++ | .|+.|++|++.. +.
T Consensus 222 -~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (372)
T 1k8k_C 222 -HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 297 (372)
T ss_dssp -TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------C
T ss_pred -CCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcc
Confidence 89999999999999999988664 8999999999998776 5 799999999977 32
Q ss_pred -------------eE------EEE-eCCCCCEEEEEEe-CCC---CEEEEEECCCCEEEEEcCCCcc
Q psy4876 546 -------------KV------AEL-HGHSARVLNLAMS-PDE---TTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 546 -------------~~------~~l-~~h~~~V~~l~~s-pdg---~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.. ..+ .+|...|++++|+ ++| .+|++|+.||.|++|++.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 298 ARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp HHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred hhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 00 223 4899999999976 677 9999999999999999976543
No 33
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=305.16 Aligned_cols=282 Identities=15% Similarity=0.234 Sum_probs=236.2
Q ss_pred ceeEEEEEecCCC--eEEEE-c---CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 269 DYYLNLIDWSHFN--VLAVA-L---GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s-~---dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
...|.+++|+|++ +++++ . |+.|+|||+.+ +.........|...|.+++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~v~~~~ 72 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-------------------------GDLKLLREIEKAKPIKCGT 72 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-------------------------SSEEEEEEEEESSCEEEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-------------------------CcccceeeecccCcEEEEE
Confidence 4468999999986 55544 3 89999999998 6666666666899999999
Q ss_pred EccC---CCEEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEEEEe--------cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 343 WIQE---GYMLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGALAW--------NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 343 ~spd---g~~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~--------~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++.+|++++.||.|++||++.....
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSC
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCc
Confidence 9998 6999999999999999999888 88999999999999966 3679999999999999999987546
Q ss_pred EEEEccCCC----CeEEEE----EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC---CCC
Q psy4876 411 VALLQNHTQ----EVCGLK----WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP---WSP 479 (609)
Q Consensus 411 ~~~~~~h~~----~V~~l~----~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp---~~~ 479 (609)
+..+..|.. .|.+++ |+|++.+|++++.||.|++||++++ +. .....|...|.+++|+| ++.
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~-~~~~~~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------AL-RWETNIKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------EE-EEEEECSSCEEEEEESCSSSSCC
T ss_pred ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC------ce-eeecCCCCceEEEEcCCCCCCCC
Confidence 777766654 799998 7889999999999999999999987 33 33456889999999999 665
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEc------CCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCC--------
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSID------TKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSL-------- 544 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~------~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~-------- 544 (609)
++++++ .|+.|++||+++++.+..+. +...|.+++|+|++. ++++ |..||.|++||+..+
T Consensus 226 -~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~ 300 (357)
T 3i2n_A 226 -KLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDS 300 (357)
T ss_dssp -EEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCT
T ss_pred -EEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccC
Confidence 555553 89999999998877655443 456899999999999 5666 448999999998753
Q ss_pred -----------ceEEEEeCCCCCEEEEEEeCCCCEEE-EEECCCCEEEEEcCCCc
Q psy4876 545 -----------VKVAELHGHSARVLNLAMSPDETTVL-SAGADETLRLWKIFEKV 587 (609)
Q Consensus 545 -----------~~~~~l~~h~~~V~~l~~spdg~~L~-s~s~Dg~I~iWdl~~~~ 587 (609)
..+..+.+|...|.+++|+|++++|+ +++.||.|+|||+....
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 301 EGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 46778889999999999999999998 89999999999998654
No 34
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=5.1e-35 Score=304.16 Aligned_cols=284 Identities=19% Similarity=0.311 Sum_probs=234.4
Q ss_pred ceeEEEEEecCC----C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeE
Q psy4876 269 DYYLNLIDWSHF----N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVC 339 (609)
Q Consensus 269 ~~~v~~l~wsp~----~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~ 339 (609)
...|.+++|+|+ . +++++.++.|+|||+.+. .....+..+. |...|+
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~------------------------~~~~~~~~~~~~~~~~~v~ 73 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ------------------------GEIRLLQSYVDADADENFY 73 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG------------------------GCEEEEEEEECSCTTCCEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC------------------------cEEEeeeeccccCCCCcEE
Confidence 346899999983 3 788888999999999861 2222333222 678999
Q ss_pred EEEEccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 340 SVAWIQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 340 ~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+++|+|+ |.+|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||++++ ..+.
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 152 (366)
T 3k26_A 74 TCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD-TLVA 152 (366)
T ss_dssp EEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT-EEEE
T ss_pred EEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC-eEEE
Confidence 9999999 679999999999999999999999999999999999999 4589999999999999999987 4666
Q ss_pred EE---ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC----------------------ccceEeecCCcc
Q psy4876 413 LL---QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS----------------------TQPIHSLSRHQA 467 (609)
Q Consensus 413 ~~---~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~----------------------~~~~~~~~~h~~ 467 (609)
.+ ..|...|.+++|+|++.+|++++.||.|++||++++..... .........|..
T Consensus 153 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 153 IFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp EECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred EecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 66 68999999999999999999999999999999987621100 011223334999
Q ss_pred cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--------------eEEEcCC-CCeEEEEEcCC--CCeEEEEEe
Q psy4876 468 AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--------------LDSIDTK-SQVCALLWNSD--YKELVSAHG 530 (609)
Q Consensus 468 ~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--------------~~~~~~~-~~v~sl~~s~~--g~~l~~~sG 530 (609)
.|.+++|+ + .++++++ .|+.|++||+.++.. +..+..+ ..|.+++|+++ +++|++ |
T Consensus 233 ~v~~~~~~--~-~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~ 305 (366)
T 3k26_A 233 YVDCVRWL--G-DLILSKS--CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--G 305 (366)
T ss_dssp CCCEEEEE--T-TEEEEEC--SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--E
T ss_pred eEEEEEEc--C-CEEEEEe--cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--E
Confidence 99999998 3 4777764 899999999987754 5555544 57999999999 999998 5
Q ss_pred cCCCeEEEEECCCCc----eEEEEeCC--CCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 531 FAQNQLIIWKYPSLV----KVAELHGH--SARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 531 ~~dg~I~Iwd~~~~~----~~~~l~~h--~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
..||.|++||+.+++ ....+.+| ...|.+++|+|++++|++++.||.|+|||+.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 589999999999875 44577777 7999999999999999999999999999985
No 35
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=307.12 Aligned_cols=275 Identities=17% Similarity=0.262 Sum_probs=242.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|++||... . .+..+. |...|.+++|+|
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~--------------------------~--~~~~~~~~~~~v~~~~~~~ 159 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKTG--------------------------A--LLNVLNFHRAPIVSVKWNK 159 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEETTS--------------------------C--EEEEECCCCSCEEEEEECT
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEeCCC--------------------------C--eeeeccCCCccEEEEEECC
Confidence 3468999999986 66688899999999432 2 233444 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc---------------eEEEEe-cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR---------------VGALAW-NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~---------------V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++++|++++.||.|++||+.+++.+..+..+... +.+++| .+..+++++.+|.|++||+... .
T Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~ 238 (425)
T 1r5m_A 160 DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-T 238 (425)
T ss_dssp TSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-S
T ss_pred CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-c
Confidence 9999999999999999999999999999888777 889999 4678999999999999999987 4
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
.+..+..|...|.+++|+|++++|++++.|+.|++||+..+ ..+..+..|...|.+++|+|++ ++++++ .
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~ 308 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG------NSQNCFYGHSQSIVSASWVGDD--KVISCS--M 308 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSB------SCSEEECCCSSCEEEEEEETTT--EEEEEE--T
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------ccceEecCCCccEEEEEECCCC--EEEEEe--C
Confidence 67788899999999999999999999999999999999987 6778888899999999999988 666654 8
Q ss_pred CCeEEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------------------eEE
Q psy4876 490 DRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--------------------KVA 548 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--------------------~~~ 548 (609)
|+.|++||+.+++++..+.. ...+.+++|+|++++|+++ ..||.|+|||+.++. .+.
T Consensus 309 d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (425)
T 1r5m_A 309 DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYA 386 (425)
T ss_dssp TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE--ETTSCEEEEECHHHHC--------------CEECCEEE
T ss_pred CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE--ECCCeEEEEECCCCccceeeeecccccccCcccchhhh
Confidence 99999999999999988876 4589999999999999984 489999999999888 889
Q ss_pred EEeCCCC--CEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 549 ELHGHSA--RVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 549 ~l~~h~~--~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.+|.. .|.+++|+|++++|++++.||.|++|++.
T Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 387 SYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999976 99999999999999999999999999986
No 36
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-35 Score=318.77 Aligned_cols=287 Identities=16% Similarity=0.236 Sum_probs=226.6
Q ss_pred ceeEEEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
+..|++|+|+|. + +++|+.||.|+|||+.+ +....+..+. |.+.|++|+|+
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~-------------------------~~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-------------------------KDKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSC-------------------------CSCCEEECCCSSSCCCCEEEEC
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC-------------------------CCceeEEEccCCCCCEEEEEEe
Confidence 345999999995 3 55588899999999987 5555555555 99999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCCCeeEEEecC--CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 345 Q-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG--HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 345 p-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
| ++.+|++|+.||+|+|||++++........ +...+.+++| ++.+|++|+.||.|++||++.. .+..+.+|..
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~ 251 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKK 251 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSS
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccc
Confidence 8 689999999999999999987654444433 3445778888 5789999999999999999753 5677889999
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
.|.+++|+|++. +|++|+.|+.|+|||++..... ..+....+|...|.+++|+|++. +|++++ .|+.|++||+
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~---~~~~~~~~h~~~v~~~~~spdg~-~l~s~~--~D~~i~iwd~ 325 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK---ASFLYSLPHRHPVNAACFSPDGA-RLLTTD--QKSEIRVYSA 325 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS---SCCSBCCBCSSCEEECCBCTTSS-EEEEEE--SSSCEEEEES
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEeccccccc---ceEEEeeeccccccceeECCCCC-eeEEEc--CCCEEEEEEC
Confidence 999999999876 7889999999999999887422 23334467999999999999985 555653 8999999999
Q ss_pred CCCceeEEEcCCC-------CeEEEEEcCCCCeEEEEE----------ecCCCeEEEEECCCCceEEEEe-CCCCCEEEE
Q psy4876 499 SSGACLDSIDTKS-------QVCALLWNSDYKELVSAH----------GFAQNQLIIWKYPSLVKVAELH-GHSARVLNL 560 (609)
Q Consensus 499 ~t~~~~~~~~~~~-------~v~sl~~s~~g~~l~~~s----------G~~dg~I~Iwd~~~~~~~~~l~-~h~~~V~~l 560 (609)
.++.+...+..+. .+....|++++..++++. +..++.|++||..+++.+..+. +|...|.++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 326 SQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp SSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred CCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 9998877765332 244567888877776642 2234679999999999998875 688888887
Q ss_pred -EEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 561 -AMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 561 -~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+|+|+|.+|++|+ |++|+||++.++...
T Consensus 406 ~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 406 NEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp EEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 6999999999875 889999999887543
No 37
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.5e-34 Score=304.73 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=228.3
Q ss_pred eeEEEEEecCCC---eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHFN---VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~~---lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|++++|+|++ +++++.|+.|+|||+.+ +......... |...|.+++|+|
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-------------------------QNKTSFIQGMGPGDAITGMKFNQ 128 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTS-------------------------TTCEEEECCCSTTCBEEEEEEET
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-------------------------cccceeeecCCcCCceeEEEeCC
Confidence 458999999986 66688899999999988 5555555543 899999999999
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCeeEEEecC---CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 346 -EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG---HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 346 -dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
++.+|++++.||.|++||+.+ ..+..+.. |...|.+++| ++.+|++|+.||.|++||++. ..+..+.+|..
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~ 205 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKA 205 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSS
T ss_pred CCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCC
Confidence 779999999999999999986 55555544 4488999999 578999999999999999953 47888899999
Q ss_pred CeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC-CCCcEEEEEeccCCCeEEEEE
Q psy4876 420 EVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP-WSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 420 ~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~llasggGs~Dg~I~iwd 497 (609)
.|.+++|+|+++ +|++|+.|+.|++||+++.... ...+..+ +|...|.+++|+| ++. ++++++ .|+.|++||
T Consensus 206 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~~~~~s~~~~~-~l~~~~--~d~~i~iwd 279 (383)
T 3ei3_B 206 KVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVNAAYFNPTDST-KLLTTD--QRNEIRVYS 279 (383)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEEEEEECTTTSC-EEEEEE--SSSEEEEEE
T ss_pred cEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceEEEEEcCCCCC-EEEEEc--CCCcEEEEE
Confidence 999999999999 9999999999999999974221 1344555 6999999999999 775 555653 799999999
Q ss_pred CCCCceeEEEcCC------------------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCE
Q psy4876 498 VSSGACLDSIDTK------------------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARV 557 (609)
Q Consensus 498 ~~t~~~~~~~~~~------------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V 557 (609)
+++++.+..+..+ ..+..++|++++++ +|+.|+.|+|||+.+++.+..+.+ |...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~----s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~ 355 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL----LLNDKRTIDIYDANSGGLVHQLRDPNAAGII 355 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT----CTTCCCCEEEEETTTCCEEEEECBTTBCSCC
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc----ccCCCCeEEEEecCCCceeeeecCCCCCceE
Confidence 9998876665422 23444566666655 256899999999999999999987 45778
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
..++|+|++.+|++|+ |+.|+|||+.+
T Consensus 356 ~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 8889999999999997 99999999975
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-33 Score=293.56 Aligned_cols=250 Identities=14% Similarity=0.268 Sum_probs=223.1
Q ss_pred eeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc
Q psy4876 328 HLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~ 404 (609)
...++. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+..|...|.+++| ++.+|++|+.|+.|++||+
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~ 126 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 344565 9999999999999999999999999999999999999999999999999999 5789999999999999999
Q ss_pred CCCC---eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 405 RSRD---HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 405 ~~~~---~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
.+.. .....+.+|...|.++.|++++. +++++.|+.|++||+.++ ..+..+.+|...|.+++|+|++. +
T Consensus 127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~~-~ 198 (340)
T 1got_B 127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG------QQTTTFTGHTGDVMSLSLAPDTR-L 198 (340)
T ss_dssp TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-E
T ss_pred ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC------cEEEEEcCCCCceEEEEECCCCC-E
Confidence 8753 34567789999999999998875 889999999999999988 78889999999999999999874 6
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVL 558 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~ 558 (609)
+++|+ .|+.|++||++++.++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.++..+..+.. +...|.
T Consensus 199 l~sg~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 199 FVSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG--SDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EEEEe--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE--cCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 67764 8999999999999999998765 589999999999999984 4899999999999988877643 335799
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+++|+|+|++|++|+.|+.|++||+......
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 305 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEe
Confidence 9999999999999999999999999876643
No 39
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-33 Score=288.26 Aligned_cols=244 Identities=20% Similarity=0.325 Sum_probs=208.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCC--CeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSA--KKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|.+++|+|+|++||+|+.||.|+|||+.. .+.+..+.+|...|.+++|. +.+|++|+.||+|++||+.++
T Consensus 8 h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred CcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 889999999999999999999999999999974 46788999999999999993 689999999999999999875
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS------ 478 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------ 478 (609)
. ..+..+.+|...|.+++|+|+ |.+|++|+.|+.|++||++.+.. .....+.+|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCSSCEEEEEECCCC------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeecccCccceEeecCCccccccc
Confidence 3 345677889999999999997 89999999999999999987521 1245677899999999999974
Q ss_pred ------CcEEEEEeccCCCeEEEEECCCCc----eeEEEcCC-CCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCC
Q psy4876 479 ------PNVLASGGGTADRHIYFWNVSSGA----CLDSIDTK-SQVCALLWNSDY---KELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 479 ------~~llasggGs~Dg~I~iwd~~t~~----~~~~~~~~-~~v~sl~~s~~g---~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..+|++|+ .|+.|++||++++. +...+..| ..|.+++|+|++ .+|++ ++.|+.|+|||+...
T Consensus 164 ~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 164 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNE 239 (297)
T ss_dssp ------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESST
T ss_pred CCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCC
Confidence 35788874 89999999998776 55666655 589999999995 67777 448999999998764
Q ss_pred c---eEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 545 V---KVAEL--HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 545 ~---~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
. ....+ ..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 3 22233 46888999999999999999999999999999864
No 40
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=305.06 Aligned_cols=281 Identities=12% Similarity=0.231 Sum_probs=229.1
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
...|++|+|+| ++ +++++.|+.|+|||+.+.... ........+.|...|.+++|+|
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~~h~~~v~~~~~~~ 121 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTYDCSSTVTQITMIP 121 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEEECSSCEEEEEECT
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeeccCCCCEEEEEEeC
Confidence 35699999999 75 677889999999998651000 1122233445899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCC---CCeeEEEecC------------CCCceEEEEe----cCCEEEEEecCCeEEEEEcCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVS---AKKKCRTMDG------------HDVRVGALAW----NTYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~---~~~~~~~l~~------------h~~~V~~l~~----~~~~L~sgs~dg~I~iwd~~~ 406 (609)
++.+|++|+.||.|+|||+. +++.+..+.+ +...+.++.+ ++.+|++|+.||.|++||+++
T Consensus 122 ~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 201 (437)
T 3gre_A 122 NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT 201 (437)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 99999999999999999995 4444443322 5566777774 378999999999999999998
Q ss_pred CCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCC---CCc
Q psy4876 407 RDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPW---SPN 480 (609)
Q Consensus 407 ~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~---~~~ 480 (609)
. ..+..+.. |...|.+++|+|++.+|++|+.||.|++||++.+ +++..+. .|...|.+++|+|. ...
T Consensus 202 ~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~s~~~~ 274 (437)
T 3gre_A 202 L-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN------VLIRSWSFGDHAPITHVEVCQFYGKNSV 274 (437)
T ss_dssp C-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT------EEEEEEBCTTCEEEEEEEECTTTCTTEE
T ss_pred C-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc------cEEEEEecCCCCceEEEEeccccCCCcc
Confidence 7 46777777 8999999999999999999999999999999987 6777775 78889999988764 224
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEcCC---------------------------CCeEEEEEcCCCCeEEEEEecCC
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSIDTK---------------------------SQVCALLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~~~---------------------------~~v~sl~~s~~g~~l~~~sG~~d 533 (609)
++++| +.|+.|++||+.+++++..+..+ ..|.+++|+ ++++|++ |+.|
T Consensus 275 ~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d 349 (437)
T 3gre_A 275 IVVGG--SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEAT 349 (437)
T ss_dssp EEEEE--STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGG
T ss_pred EEEEE--cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCC
Confidence 67776 48999999999999988877632 248889999 7777777 5689
Q ss_pred CeEEEEECCCCceEEEEeC-------------------------------------CCCCEEEEEEeCC--CCEEEEEEC
Q psy4876 534 NQLIIWKYPSLVKVAELHG-------------------------------------HSARVLNLAMSPD--ETTVLSAGA 574 (609)
Q Consensus 534 g~I~Iwd~~~~~~~~~l~~-------------------------------------h~~~V~~l~~spd--g~~L~s~s~ 574 (609)
+.|++||+.+++.+..+.+ |.+.|++++|+++ +.+|++|+.
T Consensus 350 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~ 429 (437)
T 3gre_A 350 SSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN 429 (437)
T ss_dssp TEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET
T ss_pred CeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC
Confidence 9999999999887777765 8899999999998 789999999
Q ss_pred CCCEEEEE
Q psy4876 575 DETLRLWK 582 (609)
Q Consensus 575 Dg~I~iWd 582 (609)
||.|+||+
T Consensus 430 dG~I~iw~ 437 (437)
T 3gre_A 430 SGLIGIFQ 437 (437)
T ss_dssp TSCEEEEC
T ss_pred CceEEEeC
Confidence 99999995
No 41
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-33 Score=290.25 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=238.1
Q ss_pred eEEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.|.+++|+|++ +++ +..++.+.+|.... ....+..+.|...|++++|+|+++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~h~~~v~~~~~~~~~~ 64 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPR--------------------------HARQINTLNHGEVVCAVTISNPTR 64 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCS--------------------------EEEEEEEECCSSCCCEEEECSSSS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCC--------------------------ccccceeccCCCceEEEEEecCCc
Confidence 47789999997 554 44455565564433 233444445999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCe---eEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-eEEEEccCCCC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKK---KCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH-KVALLQNHTQE 420 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~---~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~ 420 (609)
+|++++ ||.|++||+.+++ .+..+. +|...|.+++| ++.+|++++.||.|++||+.+... ....+..|...
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 143 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCc
Confidence 999998 9999999998764 233333 79999999999 478999999999999999988642 45667889999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|.+++|+|++++|++++.||.|++||++++ +.+..+..|...|.+++|+|++. ++++++ .|+.|++||+++
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~dg~i~~~d~~~ 214 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISNDGT-KLWTGG--LDNTVRSWDLRE 214 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEETTT
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceeeeeecccCceEEEEECCCCC-EEEEEe--cCCcEEEEECCC
Confidence 999999999999999999999999999987 77888889999999999999885 555553 899999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
++.+..+.....+.+++|+|+++.++++ ..++.|++||+.+.+.. .+..|...|.+++|+|++++|++++.||.|++
T Consensus 215 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 215 GRQLQQHDFTSQIFSLGYCPTGEWLAVG--MESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp TEEEEEEECSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CceEeeecCCCceEEEEECCCCCEEEEE--cCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEE
Confidence 9999999888899999999999999984 48999999999987754 66789999999999999999999999999999
Q ss_pred EEcCCCccc
Q psy4876 581 WKIFEKVKS 589 (609)
Q Consensus 581 Wdl~~~~~~ 589 (609)
|++..+...
T Consensus 292 ~~~~~~~~~ 300 (337)
T 1gxr_A 292 WRTPYGASI 300 (337)
T ss_dssp EETTTCCEE
T ss_pred EECCCCeEE
Confidence 999987765
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.4e-33 Score=308.07 Aligned_cols=271 Identities=25% Similarity=0.458 Sum_probs=236.7
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|+.|++|+... . .+..+. |...|.+++|+|
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-------------------------~---~~~~~~~h~~~v~~~~~~~ 313 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-------------------------Q---LLQTLTGHSSSVWGVAFSP 313 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-------------------------C---EEEEECCCSSCEEEEEECT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-------------------------c---EEEEEecCCCCeEEEEECC
Confidence 3458899999986 67788999999999754 2 223344 889999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
++.+|++++.||.|++||... ..+..+.+|...|.+++| ++.+|++|+.||.|++||... ..+..+.+|...|.+
T Consensus 314 ~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~ 390 (577)
T 2ymu_A 314 DGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRG 390 (577)
T ss_dssp TSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEE
Confidence 999999999999999999864 567788899999999999 578999999999999999653 467888899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++|+|+|++|++++.|+.|++||.. + +.+..+.+|...|.+++|+|++. ++++++ .|+.|++||. +++.
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~--~d~~v~~w~~-~~~~ 459 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVAFSPDDQ-TIASAS--DDKTVKLWNR-NGQL 459 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSEEEEEET-TSCE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEEECCCCC-EEEEEc--CCCEEEEEEC-CCCE
Confidence 9999999999999999999999964 3 57788899999999999999985 556653 8999999996 4666
Q ss_pred eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 504 LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 504 ~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
+..+..+ ..|.+++|+|++++|+++ ..|+.|+|||. +++.+..+.+|...|++++|+|||++|++++.|+.|+|||
T Consensus 460 ~~~~~~~~~~v~~~~~spd~~~las~--~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 460 LQTLTGHSSSVRGVAFSPDGQTIASA--SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEE--ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEE--eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 7666654 589999999999999985 48999999994 6888999999999999999999999999999999999999
Q ss_pred cC
Q psy4876 583 IF 584 (609)
Q Consensus 583 l~ 584 (609)
..
T Consensus 537 ~~ 538 (577)
T 2ymu_A 537 RN 538 (577)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 43
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-34 Score=304.74 Aligned_cols=277 Identities=18% Similarity=0.199 Sum_probs=229.4
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
++.++|+|++ +++++.|+.|++||+.+ +... ..+.....+....|++++++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~-------------------------~~~~--~~~~~~~~~~~~~~~~~~~~ 111 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTII-------------------------RDGS--KMLKRADYTAVDTAKLQMRR 111 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCS-------------------------EETT--TTSCSCCEEEEEEECSSSCE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecc-------------------------ccee--eEEecCCceEEEEEecCCCE
Confidence 3468899985 78899999999999987 3322 22222345566678999999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
||+|+.||.|+|||+.+++....+.+|...|.+++| ++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+
T Consensus 112 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-SNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp EEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CCCEEEECCSSCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-cCceEEcCCCCcEEEEEEc
Confidence 999999999999999999999998999999999999 5789999999999999999987 4677888999999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC---CcccEEEEEE---------------------cCCCCcEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR---HQAAVKAIAW---------------------CPWSPNVLA 483 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~l~~---------------------sp~~~~lla 483 (609)
|++++|++|+.|+.|++||++++ +.+..+.. |...|.+++| +|++. +++
T Consensus 191 ~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~ 263 (420)
T 3vl1_A 191 DRGRNVLSASLDGTIRLWECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVI 263 (420)
T ss_dssp TTTTEEEEEETTSCEEEEETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEE
T ss_pred CCCCEEEEEcCCCcEEEeECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEE
Confidence 99999999999999999999987 56666653 4445555554 67664 566
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCce-EEEEeC-CCCCEE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVK-VAELHG-HSARVL 558 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~-~~~l~~-h~~~V~ 558 (609)
+|+ .|+.|++||+++++.+..+.. ...+.+++|+|++. ++++ |+.||.|++||+.++.. +..+.+ |...|.
T Consensus 264 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~ 339 (420)
T 3vl1_A 264 AGH--VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPIN 339 (420)
T ss_dssp EEE--TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEE
T ss_pred EEc--CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCce
Confidence 653 899999999999998887754 35899999999999 7777 45899999999998754 677766 667788
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
++.| +++.+|++++.|+.|++|++.....
T Consensus 340 ~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 340 NVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred EEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 8855 5788999999999999999987543
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.7e-35 Score=307.49 Aligned_cols=281 Identities=15% Similarity=0.197 Sum_probs=216.9
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|++++|+|++ +++++.|+.|+|||+.+ +....+..+. |...|.+++|+|++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDG-------------------------NGWKHARTFSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEET-------------------------TEEEECCCBCCCSSCEEEEEECTTT
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccC-------------------------CceEEEEEEecCCceEEEEEEeCCC
Confidence 58889999986 44466899999999987 5445566666 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCe---eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe--eEEEEcc-CCC
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH--KVALLQN-HTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~ 419 (609)
++|++|+.||.|+|||+.+++ ....+.+|...|.+++| ++.+|++++.||.|++||++.... ....+.. |..
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 999999999999999999877 67788899999999999 578999999999999999998642 3667777 999
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC------------CccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF------------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.|.+++|+|++++|++|+.|+.|++||+....... ...++..+ .|...|.+++|+|++. +|++++
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~- 224 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAG- 224 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEE-
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEe-
Confidence 99999999999999999999999999986432110 12455566 8999999999999986 555553
Q ss_pred cCCCeEEEEECCCCce----eEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-----------------
Q psy4876 488 TADRHIYFWNVSSGAC----LDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV----------------- 545 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~----~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----------------- 545 (609)
.|+.|++||+.++++ +..+..+ ..|.+++|+|++++|++ |..++ +.+|+.....
T Consensus 225 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (377)
T 3dwl_C 225 -HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAA--GYNYS-PILLQGNESGWAHTRDLDAGTSKTSFT 300 (377)
T ss_dssp -TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEE--ESSSS-EEEECCCC---CCSBCCCSCCCCCCBS
T ss_pred -CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEE--EcCCc-EEEEEeCCCceEEEeeecccccccccc
Confidence 899999999999987 6666655 47999999999998877 43455 4477654111
Q ss_pred -------------eE------EEE----------------eCCCCCEEEEEEeCCC-C---EEEEEECCCCEEEEEc
Q psy4876 546 -------------KV------AEL----------------HGHSARVLNLAMSPDE-T---TVLSAGADETLRLWKI 583 (609)
Q Consensus 546 -------------~~------~~l----------------~~h~~~V~~l~~spdg-~---~L~s~s~Dg~I~iWdl 583 (609)
.+ ..+ ..|...|+++++.+.+ . .|+|||.||.|+|||+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 301 HTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 00 011 1299999999976643 3 6999999999999986
No 45
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=306.63 Aligned_cols=285 Identities=18% Similarity=0.304 Sum_probs=235.2
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|++||+.... .....+..+. |...|.+++|+|
T Consensus 67 ~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~~ 123 (416)
T 2pm9_A 67 DSKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-----------------------NAINSMARFSNHSSSVKTVKFNA 123 (416)
T ss_dssp SSCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-----------------------SCCCEEEECCCSSSCCCEEEECS
T ss_pred CCceEEEEECCCCCeEEEEccCCeEEEeeccccc-----------------------ccccchhhccCCccceEEEEEcC
Confidence 3458999999986 6667889999999997611 1122445555 899999999999
Q ss_pred C-CCEEEEEeCCCeEEEEeCCCCe------eEE---EecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 346 E-GYMLGVGTSLGTVQLWDVSAKK------KCR---TMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 346 d-g~~Lasgs~dg~I~iwd~~~~~------~~~---~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+ +.+|++|+.||.|++||+.+++ ... .+..|...|.+++|+ +.+|++++.||.|++||+++. ..+.
T Consensus 124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 202 (416)
T 2pm9_A 124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAK-KEVI 202 (416)
T ss_dssp SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTT-EEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCC-Ccce
Confidence 8 8999999999999999999876 333 346799999999994 579999999999999999987 4666
Q ss_pred EEccC------CCCeEEEEEccCC-CEEEEEeCCC---cEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCCCCcE
Q psy4876 413 LLQNH------TQEVCGLKWSPDG-RYLASGGNDN---LLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 413 ~~~~h------~~~V~~l~~spdg-~~lasgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~l 481 (609)
.+..| ...|.+++|+|++ .+|++++.|+ .|++||++++. .++..+. +|...|.+++|+|++..+
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-----TPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-----SCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-----CCcEEeecCccCceeEEEeCCCCCCe
Confidence 77666 7899999999997 6899999998 99999999863 4566677 899999999999944456
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEEe--------
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDY-KELVSAHGFAQNQLIIWKYPSLVKVAELH-------- 551 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g-~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-------- 551 (609)
+++++ .|+.|++||+.+++++..+..+ ..|.+++|+|++ .++++ +..|+.|+||++.+........
T Consensus 278 l~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~ 353 (416)
T 2pm9_A 278 LLSSG--RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQE 353 (416)
T ss_dssp EEEEE--SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC---------
T ss_pred EEEEe--CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccC
Confidence 66664 7999999999999999998765 589999999999 67777 5589999999997765322111
Q ss_pred ---------------------------CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 552 ---------------------------GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 552 ---------------------------~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.|...|.+++|+|||++|++++.|+.|+||++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 354 SETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999999864
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6.6e-33 Score=283.98 Aligned_cols=252 Identities=21% Similarity=0.381 Sum_probs=223.1
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHD 403 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd 403 (609)
.....+. |...|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++| ++.+|++|+.||.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 3445555 9999999999999999999999999999999999999999999999999999 578999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
+.++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++++ +.+..+..|...|.+++|+|++. +++
T Consensus 94 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~ 165 (312)
T 4ery_A 94 VSSG-KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDGS-LIV 165 (312)
T ss_dssp TTTC-CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSS-EEE
T ss_pred CCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEEcCCCC-EEE
Confidence 9987 477888999999999999999999999999999999999988 67888899999999999999885 566
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE--
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-- 559 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-- 559 (609)
+++ .|+.|++||+++++++..+.. ...+..++|+|++++++++ ..|+.|++||+.+++.+..+.+|...+.+
T Consensus 166 ~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 241 (312)
T 4ery_A 166 SSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA--TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241 (312)
T ss_dssp EEE--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEE--ETTTEEEEEETTTTEEEEEECSSCCSSSCCC
T ss_pred EEe--CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEE--cCCCeEEEEECCCCcEEEEEEecCCceEEEE
Confidence 653 899999999999998887743 3579999999999999984 48999999999999999999888765332
Q ss_pred EEEe-CCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 560 LAMS-PDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 560 l~~s-pdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..++ +++.+|++|+.||.|++||+.++....
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~ 273 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence 3344 678999999999999999998876543
No 47
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.4e-34 Score=297.40 Aligned_cols=244 Identities=16% Similarity=0.243 Sum_probs=203.2
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeee---eeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHL---MDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~h~~~V~~v~~s 344 (609)
...|.+++|+|++ +++++.||.|+|||+.+ ++.... ....|...|++|+|+
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~-------------------------~~~~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILE-------------------------KESLLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC---------------------------------CCCCEEECCCSSCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccc-------------------------cceeEEEeeccCCCCCCEEEEEEC
Confidence 3458999999986 88899999999999987 332222 222388999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeE-EEEccCCCC
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKV-ALLQNHTQE 420 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~ 420 (609)
|+|++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ + .++++++.||.|++||++++.... .....|...
T Consensus 149 pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~ 228 (357)
T 4g56_B 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTI 228 (357)
T ss_dssp SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSC
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccc
Confidence 999999999999999999999999999999999999999994 3 589999999999999999864222 223457788
Q ss_pred eEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 421 VCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 421 V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+.+++|+|+ +.+|++|+.|+.|++||++++ +.+..+.+|...|.+++|+|++..+|++|+ .|+.|+|||++
T Consensus 229 v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs--~D~~i~iwd~~ 300 (357)
T 4g56_B 229 PTSVTWHPEKDDTFACGDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASIS--EDCTVAVLDAD 300 (357)
T ss_dssp EEEEEECTTSTTEEEEEESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTT
T ss_pred ccchhhhhcccceEEEeecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEe--CCCEEEEEECC
Confidence 999999997 568999999999999999988 788899999999999999999988888874 89999999999
Q ss_pred CCceeEEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 500 SGACLDSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 500 t~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+++++..+.+...|.+++|+| ++.+|+++ +.|+.|++|++++....
T Consensus 301 ~~~~~~~~~H~~~V~~vafsP~d~~~l~s~--s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 301 FSEVFRDLSHRDFVTGVAWSPLDHSKFTTV--GWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp SCEEEEECCCSSCEEEEEECSSSTTEEEEE--ETTSCEEEEECC-----
T ss_pred CCcEeEECCCCCCEEEEEEeCCCCCEEEEE--cCCCeEEEEECCCCCcc
Confidence 999998887778999999998 78888884 48999999999765443
No 48
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-34 Score=318.94 Aligned_cols=268 Identities=11% Similarity=0.115 Sum_probs=211.4
Q ss_pred EEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccccee--eeeeec-CCCCeEEEEEccC------CCEEEEEe
Q psy4876 284 AVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID--HLMDLE-GNENVCSVAWIQE------GYMLGVGT 354 (609)
Q Consensus 284 a~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~-h~~~V~~v~~spd------g~~Lasgs 354 (609)
+++.|++|+|||+.+ +... ....+. |.+.|.+|+|+|+ +.+||+|+
T Consensus 178 S~s~D~tI~iWd~~~-------------------------~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s 232 (524)
T 2j04_B 178 KEKHSSCIQIFKMNT-------------------------STLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS 232 (524)
T ss_dssp ----CEEEEEEEEET-------------------------TTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred cCCCCceEEEEEccC-------------------------CCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence 356788999999877 3321 123344 6789999999997 57999999
Q ss_pred CCCeEEEEeCCCCee-----------EEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 355 SLGTVQLWDVSAKKK-----------CRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~-----------~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
.||+|+|||+..+.. ...+.+|...|.+++|+ +..|++|+.||+|++||++++......+.+|...|.
T Consensus 233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~ 312 (524)
T 2j04_B 233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL 312 (524)
T ss_dssp TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE
T ss_pred cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE
Confidence 999999999986632 24778899999999994 579999999999999999976555667889999999
Q ss_pred EE--EEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc--cEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 423 GL--KWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA--AVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 423 ~l--~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
+| +|+++| .+||+|+.|++|+|||++++ +.+..+.+|.. .|.+++|+|++.. +++++ .|+.|++||
T Consensus 313 sv~~~~s~~g~~~laS~S~D~tvklWD~~~~------~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~--~d~tv~lwd 383 (524)
T 2j04_B 313 SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI------ATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSD--GASSLRAVP 383 (524)
T ss_dssp EEEEECCTTSCCEEEEEETTSEEEEECGGGH------HHHCEEEEECSCCSCCCEEEETTTTE-EEEEC--SSSEEEEEE
T ss_pred EEEEEcCCCCCeEEEEeccCCeEEEEECCCC------CcccccccccccCcccceEeCCCcCe-EEEeC--CCCcEEEEE
Confidence 99 578888 89999999999999999876 55555656653 5789999999864 55553 799999999
Q ss_pred CCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC---------------------------------
Q psy4876 498 VSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS--------------------------------- 543 (609)
Q Consensus 498 ~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~--------------------------------- 543 (609)
++++.++..+..+ ..|.+++|+|+++.|++ |+.|++|+|||...
T Consensus 384 ~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S--gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~ 461 (524)
T 2j04_B 384 SRAAFAVHPLVSRETTITAIGVSRLHPMVLA--GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRID 461 (524)
T ss_dssp TTCTTCCEEEEECSSCEEEEECCSSCCBCEE--EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEEC
T ss_pred CcccccceeeecCCCceEEEEeCCCCCeEEE--EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEcc
Confidence 9999987777654 58999999999999988 55899999887421
Q ss_pred -----------CceEEEEeCCCCCEEEEEEeCCCC---EEEEEECCCCEEEEEcCCCc
Q psy4876 544 -----------LVKVAELHGHSARVLNLAMSPDET---TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 -----------~~~~~~l~~h~~~V~~l~~spdg~---~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+..+..+.+|...|.+|+|+|++. +|++|+.||+|+||++....
T Consensus 462 ~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 462 SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 112334567889999999999964 99999999999999997654
No 49
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-33 Score=294.08 Aligned_cols=283 Identities=13% Similarity=0.200 Sum_probs=235.4
Q ss_pred eEEEEEecCCC---eEEEEcCCeEEEEeC----CCCCCCceEEecCCccccccccccccccceeeeeee--------c-C
Q psy4876 271 YLNLIDWSHFN---VLAVALGGSIYLWNG----ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL--------E-G 334 (609)
Q Consensus 271 ~v~~l~wsp~~---lla~s~dg~I~iWd~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~-h 334 (609)
.|.+++|+|++ +++++.|+.|++|++ .++... +... ....... . |
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY------------------WKLT-IIAELRHPFALSASSGKT 107 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C------------------EEEE-EEEEEECCCCCC------
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc------------------cccc-ccccccccccccccccCC
Confidence 47889999984 455778899999999 662100 0000 1111111 1 4
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.+.|++++|+|++++|++|+.||.|+||| .+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++ ..+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISG-TVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTT-EEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCC-cEEE
Confidence 67999999999999999999999999999 677889999999999999999 5789999999999999999987 4677
Q ss_pred EEccCCCC---------------eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 413 LLQNHTQE---------------VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 413 ~~~~h~~~---------------V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
.+..+... +.+++|++++ .+++++.||.|++||+..+ ..+..+..|...|.+++|+|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~------~~~~~~~~~~~~i~~~~~~~~ 258 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEK------TPTGKLIGHHGPISVLEFNDT 258 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCS------SCSEEECCCSSCEEEEEEETT
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCC------ceeeeeccCCCceEEEEECCC
Confidence 77777766 9999999985 5888999999999999987 677888899999999999998
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
+. ++++++ .|+.|++||+.+++.+..+.. ...+.+++|+|++ .+++ +..|+.|++||+.+++.+..+..|...
T Consensus 259 ~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~ 332 (425)
T 1r5m_A 259 NK-LLLSAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVP 332 (425)
T ss_dssp TT-EEEEEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCC
T ss_pred CC-EEEEEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCcc
Confidence 86 555653 799999999999998888874 4689999999999 7666 448999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
|.+++|+|++.+|++++.||.|++||+....
T Consensus 333 i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999999999999999999998765
No 50
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=287.85 Aligned_cols=251 Identities=17% Similarity=0.275 Sum_probs=223.3
Q ss_pred eeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcC
Q psy4876 329 LMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 329 l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~ 405 (609)
..++. |.+.|++++|+|++.+||+|+.||.|+|||..+++....+..|...|.+++| ++..|++|+.|+.|.+|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 34555 9999999999999999999999999999999999999999999999999999 57999999999999999986
Q ss_pred CCC-----eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC-C
Q psy4876 406 SRD-----HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS-P 479 (609)
Q Consensus 406 ~~~-----~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~ 479 (609)
... .....+.+|...|.+++|+|++..|++|+.|++|++||++++ +.+..+.+|...|.+++|+|.. .
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~g 210 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESG------QLLQSFHGHGADVLCLDLAPSETG 210 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECCCSSC
T ss_pred ccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCCCCCeEEEEEEeCCCC
Confidence 431 245667789999999999999999999999999999999988 7888999999999999999863 3
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC--CCC
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH--SAR 556 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h--~~~ 556 (609)
.++++|+ .|+.|++||+++++++..+..+ ..|.+++|+|++.+++++ +.|+.|++||+.....+..+..+ ...
T Consensus 211 ~~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~--s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 211 NTFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASG--SDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEE--eCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 6777774 8999999999999999998765 589999999999999984 48999999999998887777543 357
Q ss_pred EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 557 VLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 557 V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+.+++|+|+|.+|++|+.|++|++||+..+...
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~ 319 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV 319 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEE
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceE
Confidence 899999999999999999999999999876644
No 51
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.5e-33 Score=300.41 Aligned_cols=274 Identities=21% Similarity=0.418 Sum_probs=233.7
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
.|.+++|..+.+++++.||.|++||+.+ +.. +..+. |.+.|.+++| ++++
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~-------------------------~~~--~~~~~~h~~~v~~l~~--~~~~ 185 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNT-------------------------LEC--KRILTGHTGSVLCLQY--DERV 185 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSS-------------------------CCE--EEEECCCSSCEEEEEC--CSSE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCC-------------------------CeE--EEEEcCCCCcEEEEEE--CCCE
Confidence 4778888655688899999999999987 443 34455 8999999999 7899
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCee--EEEEccCCCCeEEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHK--VALLQNHTQEVCGLKWS 427 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s 427 (609)
|++|+.||.|++||+.+++.+..+.+|...|.+++|++..|++|+.||.|++||+.+.... ...+.+|...|.+++|
T Consensus 186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 9999999999999999999999999999999999999999999999999999999876532 2677899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
++++|++|+.||.|++||++++ +.+..+.+|...|.+++|++ .++++|+ .|+.|++||+++++++..+
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~g~--~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIACLQYRD---RLVVSGS--SDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEEEEEeCC---CEEEEEe--CCCeEEEEECCCCCEEEEE
Confidence 7889999999999999999988 78888999999999999953 4777764 8999999999999999999
Q ss_pred cCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---------eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 508 DTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV---------KVAELHGHSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 508 ~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
..+ ..|.+++| ++.++++ |+.||.|+|||+.++. .+..+.+|.+.|.+++| ++.+|++++.||+
T Consensus 333 ~~h~~~v~~~~~--~~~~l~s--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVS--GAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEE--EETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred eCCcCcEEEEEe--cCCEEEE--EeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCE
Confidence 865 58999998 7788888 4589999999987655 78889999999999999 7889999999999
Q ss_pred EEEEEcCCCccchhh
Q psy4876 578 LRLWKIFEKVKSKKK 592 (609)
Q Consensus 578 I~iWdl~~~~~~~k~ 592 (609)
|++||+.+.......
T Consensus 407 i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 407 ILIWDFLNDPAAQAE 421 (435)
T ss_dssp EEEEC----------
T ss_pred EEEEECCCCCCcccC
Confidence 999999887655443
No 52
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=288.22 Aligned_cols=255 Identities=21% Similarity=0.357 Sum_probs=214.1
Q ss_pred ceeeeeeec-CCC-CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE---EecCCCCceEEEEe--cCCEEEEEecCC
Q psy4876 325 AIDHLMDLE-GNE-NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR---TMDGHDVRVGALAW--NTYILSSGSRCG 397 (609)
Q Consensus 325 ~~~~l~~~~-h~~-~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~---~l~~h~~~V~~l~~--~~~~L~sgs~dg 397 (609)
.+..+.++. |.+ .|.+++|+|+|++||+|+.||.|+|||+.++.... ...+|...|.+++| ++.+|++|+.|+
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cEEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 345566666 766 99999999999999999999999999998876432 23689999999999 578999999999
Q ss_pred eEEEEEcCCCC-eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 398 NIVHHDVRSRD-HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 398 ~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
.|++||+.... ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+..+.. ...+..+.+|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE---YECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC---EEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC---eEEEEEecCcCCCeEEEEECC
Confidence 99999998764 35678899999999999999999999999999999999987621 135667889999999999999
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCc--eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGA--CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS---------- 543 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~--~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~---------- 543 (609)
++. +|++|+ .|+.|++||+.++. +...+..+ ..|.+++|+|++++|+++ +.|+.|+||+...
T Consensus 161 ~~~-~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~--s~D~~v~iW~~~~~~~~~~~~~~ 235 (345)
T 3fm0_A 161 SQE-LLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC--SDDRTVRIWRQYLPGNEQGVACS 235 (345)
T ss_dssp SSS-CEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSCEEEEEEECTTCTTCCCCC
T ss_pred CCC-EEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE--eCCCeEEEeccccCCCCccceee
Confidence 985 566653 89999999998875 34566554 589999999999999984 4899999999522
Q ss_pred -----CceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 -----LVKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 -----~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..++..+.+ |...|.+++|+|++..|++++.|+.|++|++....
T Consensus 236 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 236 GSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp ---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred ccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 134455555 88999999999999999999999999999987654
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.2e-33 Score=295.47 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=227.1
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.+....|++++ +++++.|+.|+|||+.+ +.. ...+. |...|++++|+|++
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~--~~~~~~h~~~v~~~~~~~~~ 151 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNF-------------------------NLQ--REIDQAHVSEITKLKFFPSG 151 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTS-------------------------CEE--EEETTSSSSCEEEEEECTTS
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCC-------------------------cce--eeecccccCccEEEEECCCC
Confidence 34556788875 66688899999999987 443 33444 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc---CCCCeE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQN---HTQEVC 422 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~ 422 (609)
++|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||++++ ..+..+.. |...|.
T Consensus 152 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 152 EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVN 230 (420)
T ss_dssp SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEE
T ss_pred CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCcc
Confidence 99999999999999999999999999999999999999 5789999999999999999987 46666664 334444
Q ss_pred ---------------------EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCc
Q psy4876 423 ---------------------GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 423 ---------------------~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~ 480 (609)
+++|+|++++|++|+.||.|++||++++ ..+..+ ..|...|.+++|+|++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLPSKFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEECCTTSSCEEEEEECSSCTT
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcccccCCCceeEEEeCCCCC
Confidence 4555789999999999999999999987 444444 458899999999999976
Q ss_pred EEEEEeccCCCeEEEEECCCCce-eEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------ceEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGAC-LDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL---------VKVA 548 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~-~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~---------~~~~ 548 (609)
++++|+ .|+.|++||+++++. +..+.. ...+.++.| +++.+|++ ++.|+.|++|++... ....
T Consensus 305 ~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 379 (420)
T 3vl1_A 305 YIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPT 379 (420)
T ss_dssp EEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCE
T ss_pred EEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCcc
Confidence 888874 899999999998754 566653 346777755 57777777 558999999998763 2233
Q ss_pred EEeCCCCCEEEEEEeCCCC---EEEEEECCCCEEEEEcCC
Q psy4876 549 ELHGHSARVLNLAMSPDET---TVLSAGADETLRLWKIFE 585 (609)
Q Consensus 549 ~l~~h~~~V~~l~~spdg~---~L~s~s~Dg~I~iWdl~~ 585 (609)
.+.+|.+.|.+++|+|++. .|++++.+|.+.+|++.+
T Consensus 380 ~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 380 FLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 4667889999999999999 888889999999999875
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=288.39 Aligned_cols=302 Identities=18% Similarity=0.231 Sum_probs=228.8
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...|++++|+| ++ +++++.||.|+|||+.+............ ......... |...|.+++|+
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV--------------CSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE--------------EEECTTCTTCCSSCEEEEEEC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc--------------ccccccccccCCCcEEEEEEc
Confidence 34689999999 75 66788899999999987322111000000 000000012 88999999999
Q ss_pred c-CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 345 Q-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 345 p-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
| ++.+|++++.||.|++||+.+++.+..+. +...+.++.|. +.++++++.||.|++||++++ ..+..+..|.
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 186 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG-SCSHILQGHR 186 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS-CCCEEECCCC
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc-ceeeeecCCC
Confidence 9 67899999999999999999999888887 77889999983 359999999999999999987 4678888999
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCC----------CccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 419 QEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTF----------STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 419 ~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~----------~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
..|.+++|+|++. +|++|+.||.|++||++.+.... ..........|...|.+++|+|++. ++++++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~- 264 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL-HLLTVG- 264 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSS-EEEEEE-
T ss_pred CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCC-EEEEec-
Confidence 9999999999998 59999999999999998763100 0011122257889999999999885 555553
Q ss_pred cCCCeEEEEECCCCceeEEEcCC------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTK------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.|+.|++||+.+++....+... ..+........+..+++++ .++.|++||+.+++.+..+.+|...|.+++
T Consensus 265 -~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~ 341 (408)
T 4a11_B 265 -TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP--YGSTIAVYTVYSGEQITMLKGHYKTVDCCV 341 (408)
T ss_dssp -TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE--ETTEEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred -CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe--cCCEEEEEECcCCcceeeeccCCCeEEEEE
Confidence 7999999999998765544321 1222222233344555533 689999999999999999999999999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
|+|++.+|++++.||.|++|++...+....
T Consensus 342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 342 FQSNFQELYSGSRDCNILAWVPSLYEPVPD 371 (408)
T ss_dssp EETTTTEEEEEETTSCEEEEEECC------
T ss_pred EcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence 999999999999999999999998876544
No 55
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4e-32 Score=280.14 Aligned_cols=250 Identities=19% Similarity=0.232 Sum_probs=218.5
Q ss_pred ceeeeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCC-----CeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 325 AIDHLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSA-----KKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 325 ~~~~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
.+....++. |.+.|++++|+|++ ++|++|+.|+.|++||+.. +..+..+.+|...|.+++| ++.+|++|+.
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~ 85 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW 85 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC
Confidence 345556677 99999999999975 8999999999999999864 3457789999999999999 5789999999
Q ss_pred CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|++|++||+.++ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. ..+..+.+|...|.+++|+
T Consensus 86 D~~v~~wd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~~~ 157 (319)
T 3frx_A 86 DKTLRLWDVATG-ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVRVV 157 (319)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEECCCC-CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEEEc
Confidence 999999999987 57888999999999999999999999999999999999974 4678888999999999999
Q ss_pred CCCC-----cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 476 PWSP-----NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 476 p~~~-----~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
|... .++++++ .|+.|++||+.+++....+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+++.+..
T Consensus 158 ~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~--~~dg~i~iwd~~~~~~~~~ 233 (319)
T 3frx_A 158 PNEKADDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA--GKDGEIMLWNLAAKKAMYT 233 (319)
T ss_dssp CC------CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE--ETTCEEEEEETTTTEEEEE
T ss_pred cCCCCCCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCcEEEE
Confidence 9642 3677764 8999999999999988888755 589999999999999994 4899999999999999988
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 550 l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+..+ ..|.+++|+|++.+|++++.+ .+++|++.....
T Consensus 234 ~~~~-~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~ 270 (319)
T 3frx_A 234 LSAQ-DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYL 270 (319)
T ss_dssp EECC-SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEE
T ss_pred ecCC-CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCee
Confidence 8754 689999999999999988765 599999976543
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.7e-32 Score=291.98 Aligned_cols=275 Identities=19% Similarity=0.283 Sum_probs=239.3
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~L 350 (609)
+.++.++++.+++++.||.|++||+.+ +. .+..+. |.+.|.+++|++++ +|
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~V~~l~~~~~~-~l 176 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSIN-------------------------KK--FLLQLSGHDGGVWALKYAHGG-IL 176 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEECSTT-EE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCC-------------------------Cc--EEEEEeCCCcCEEEEEEcCCC-EE
Confidence 567888777788899999999999987 44 444555 99999999999988 99
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe-----------------
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH----------------- 409 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~----------------- 409 (609)
++|+.||.|++||+.+++.+..+.+|...|.+++|. +.+|++|+.||.|++||+.+...
T Consensus 177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 999999999999999999999999999999999993 48999999999999999987642
Q ss_pred -----eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 -----KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 -----~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.+..+.+|...|.++ ++++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++. .+++
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~~-~l~s 327 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQM------KCLYILSGHTDRIYSTIYDHERK-RCIS 327 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEETTTT-EEEE
T ss_pred CCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCEEEEEEcCCCC-EEEE
Confidence 255678899988877 577899999999999999999987 78889999999999999999885 5556
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
|+ .|+.|++||+.+++++..+..+ ..|.++.|+ +.++++ |+.||.|++||+.++.....+. |...+..++|+
T Consensus 328 g~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~ 400 (464)
T 3v7d_B 328 AS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFY 400 (464)
T ss_dssp EE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEE
T ss_pred Ee--CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEE
Confidence 53 8999999999999999999765 589999997 577777 4489999999999988776664 66778889999
Q ss_pred CCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 564 PDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++.+|++++ ||.|++||+.+++...+
T Consensus 401 ~~~~~l~~~~-dg~i~iwd~~~g~~~~~ 427 (464)
T 3v7d_B 401 VSDNILVSGS-ENQFNIYNLRSGKLVHA 427 (464)
T ss_dssp ECSSEEEEEE-TTEEEEEETTTCCEEES
T ss_pred eCCCEEEEec-CCeEEEEECCCCcEEeh
Confidence 9999999998 99999999999887654
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.3e-32 Score=287.01 Aligned_cols=247 Identities=24% Similarity=0.421 Sum_probs=211.7
Q ss_pred eecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC------------------ceEEEEe--cCCEE
Q psy4876 331 DLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV------------------RVGALAW--NTYIL 390 (609)
Q Consensus 331 ~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~------------------~V~~l~~--~~~~L 390 (609)
.+.|...|.+++|+|+|++||+|+ ++.++||++.+++.+..+..|.. .|.+++| ++.+|
T Consensus 60 ~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 60 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred ecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 345899999999999999999987 68999999999998888876542 4899999 57899
Q ss_pred EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEE
Q psy4876 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVK 470 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 470 (609)
++|+.||.|++||+.++ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++ +....+. +...+.
T Consensus 139 ~s~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~-~~~~v~ 210 (393)
T 1erj_A 139 ATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG------QCSLTLS-IEDGVT 210 (393)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEE-CSSCEE
T ss_pred EEEcCCCeEEEEECCCC-cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC------eeEEEEE-cCCCcE
Confidence 99999999999999986 577889999999999999999999999999999999999987 5555554 567799
Q ss_pred EEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 471 AIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
+++|+|....++++|+ .|+.|++||++++.++..+. +...|.+++|+|++++|++ |+.|+.|++||+.
T Consensus 211 ~~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~ 286 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQ 286 (393)
T ss_dssp EEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred EEEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECC
Confidence 9999995446777774 89999999999999887762 3358999999999999988 4589999999987
Q ss_pred CC------------ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 543 SL------------VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 543 ~~------------~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+. .+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.++....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~ 346 (393)
T 1erj_A 287 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL 346 (393)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEE
Confidence 53 4456778999999999999999999999999999999998876543
No 58
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=296.39 Aligned_cols=291 Identities=11% Similarity=0.253 Sum_probs=224.6
Q ss_pred cCCceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC-------
Q psy4876 266 IQNDYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN------- 335 (609)
Q Consensus 266 ~~~~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~------- 335 (609)
+.+.-.|.+|+|+|++ +++++.||.|+|||+.+..... .........+..+. |.
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------------~~~~~~~~~~~~~~~h~~~~~~~~ 88 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------------SHSRGEYNVYSTFQSHEPEFDYLK 88 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCCCCCEEEEEEEECCCCEEEGGG
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------------cccccceeEecccccccccccccc
Confidence 3345679999999986 6668889999999998721000 00002223344454 66
Q ss_pred -----CCeEEEEEccCC--CEEEEEeCCCeEEEEeCCCCeeE--------------------------------------
Q psy4876 336 -----ENVCSVAWIQEG--YMLGVGTSLGTVQLWDVSAKKKC-------------------------------------- 370 (609)
Q Consensus 336 -----~~V~~v~~spdg--~~Lasgs~dg~I~iwd~~~~~~~-------------------------------------- 370 (609)
..|++++|+|++ .+|++++.||.|+|||+.++...
T Consensus 89 ~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (447)
T 3dw8_B 89 SLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASP 168 (447)
T ss_dssp TEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEE
T ss_pred cccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccc
Confidence 889999999998 89999999999999999764432
Q ss_pred -EE-ecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE-------EccCCCCeEEEEEccCC-CEEEEEeC
Q psy4876 371 -RT-MDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL-------LQNHTQEVCGLKWSPDG-RYLASGGN 438 (609)
Q Consensus 371 -~~-l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~-------~~~h~~~V~~l~~spdg-~~lasgs~ 438 (609)
.. ..+|...|.+++| ++.+|++| .||.|++||++.....+.. +.+|...|.+++|+|++ .+|++|+.
T Consensus 169 ~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~ 247 (447)
T 3dw8_B 169 RRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS 247 (447)
T ss_dssp EEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET
T ss_pred eEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC
Confidence 12 3689999999999 57899998 7999999999854444442 55899999999999998 99999999
Q ss_pred CCcEEEEeCCCCCCCCCccceEeecCCcc------------cEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeE
Q psy4876 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQA------------AVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLD 505 (609)
Q Consensus 439 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~ 505 (609)
||.|++||++++... ...+..+..|.. .|.+++|+|++. +|++++ . +.|++||+++ ++++.
T Consensus 248 dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~--~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 248 KGTIRLCDMRASALC--DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD--Y-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp TSCEEEEETTTCSSS--CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE--S-SEEEEEETTCCSSCSC
T ss_pred CCeEEEEECcCCccc--cceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee--C-CeEEEEeCCCCccccc
Confidence 999999999987311 012677777776 899999999885 555653 5 9999999997 88888
Q ss_pred EEcCCCC----------------eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-----------------
Q psy4876 506 SIDTKSQ----------------VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG----------------- 552 (609)
Q Consensus 506 ~~~~~~~----------------v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~----------------- 552 (609)
.+..+.. +..++|+|++++|++ |+.||.|+|||+.+++.+. +.+
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 398 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVC 398 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCcccc
Confidence 8876653 334999999999987 5689999999999887763 332
Q ss_pred ----------------CCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 553 ----------------HSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 553 ----------------h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+...|.+++|+|++.+||+++.|+ +++|.-
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 399 ASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 345689999999999999998876 777764
No 59
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.5e-33 Score=294.49 Aligned_cols=254 Identities=16% Similarity=0.259 Sum_probs=220.9
Q ss_pred eeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw 402 (609)
......+. |.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++| ++.+|++|+.|+.|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw 135 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIF 135 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 34455666 9999999999999999999999999999999999999999999999999999 57999999999999999
Q ss_pred EcCCCC------eeEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-----cCCcccEE
Q psy4876 403 DVRSRD------HKVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-----SRHQAAVK 470 (609)
Q Consensus 403 d~~~~~------~~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~ 470 (609)
|+.... .....+.+|...|.++.|+|+ +..|++|+.|++|++||+.++ +.+..+ .+|...|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC------CEEEEECCCSSSSCCSCEE
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC------cEEEEeecccCCCCccCeE
Confidence 997532 134567799999999999996 457999999999999999988 555555 67899999
Q ss_pred EEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 471 AIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
+++|++.+..++++|+ .|+.|++||++ .+.++..+..+ ..|.+++|+|++.+|++ |+.|+.|+|||+.++..+.
T Consensus 210 ~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEE
Confidence 9999986667888875 89999999998 55777777755 58999999999999998 5589999999999999988
Q ss_pred EEeCCCC-------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 549 ELHGHSA-------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 549 ~l~~h~~-------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.+..+.. .|++++|+|+|.+|++|+.||.|++||+..++..
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 8865432 4899999999999999999999999999876654
No 60
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.8e-33 Score=295.80 Aligned_cols=285 Identities=18% Similarity=0.295 Sum_probs=234.3
Q ss_pred ceeEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccce-eeeeeec-CCCCeEEEEE
Q psy4876 269 DYYLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAI-DHLMDLE-GNENVCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~-h~~~V~~v~~ 343 (609)
.+..+.++++|+. +++ ++.||.|+||++... +.. ..+..+. |.+.|++++|
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~------------------------~~~~~~~~~~~~h~~~V~~~~~ 89 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKT------------------------GRVDKNVPLVCGHTAPVLDIAW 89 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCC------------------------EECCTTCCCBCCCSSCEEEEEE
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccC------------------------CCCCCCCceEecCCCCEEEEEe
Confidence 3445668899986 332 577999999999651 111 2233344 8999999999
Q ss_pred cc-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 344 IQ-EGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 344 sp-dg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
+| ++++|++|+.||.|+|||+.++ +.+..+.+|...|.+++|+ + .+|++++.||.|++||++++ ..+.
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-~~~~ 168 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-AAVL 168 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-EEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-CccE
Confidence 99 8999999999999999999987 6688899999999999994 3 69999999999999999987 5677
Q ss_pred EE--ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCccc-EEEEEEcCCCCcEEEEEe-c
Q psy4876 413 LL--QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAA-VKAIAWCPWSPNVLASGG-G 487 (609)
Q Consensus 413 ~~--~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~-V~~l~~sp~~~~llasgg-G 487 (609)
.+ ..|...|.+++|+|++.+|++++.|+.|++||++++ +.+..+ ..|.+. +.+++|+|++ .++++|. +
T Consensus 169 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~ 241 (402)
T 2aq5_A 169 TLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG------TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSR 241 (402)
T ss_dssp EECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT------EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECT
T ss_pred EEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC------ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccC
Confidence 77 789999999999999999999999999999999987 677777 678776 8999999987 4666651 1
Q ss_pred cCCCeEEEEECCCCce---eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEEeC--CCCCEEEEE
Q psy4876 488 TADRHIYFWNVSSGAC---LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK-VAELHG--HSARVLNLA 561 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~---~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~-~~~l~~--h~~~V~~l~ 561 (609)
+.|+.|++||+++++. ...+.+...+.+++|+|++++++++ |..|+.|++||+.+++. +..+.. |...|.+++
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~ 320 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMG 320 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEE
T ss_pred CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceE
Confidence 3799999999998764 3333456789999999999999765 45799999999998874 444443 568999999
Q ss_pred EeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 562 MSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
|+|++.++++ .|+.+++|++.++..
T Consensus 321 ~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 321 YMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp ECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred Eeccccccee--cceeEEEEEcCCCcE
Confidence 9999998775 577999999987543
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3e-33 Score=288.23 Aligned_cols=245 Identities=20% Similarity=0.304 Sum_probs=204.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|+|++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|. +.+|++|+.|++|++||++++
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG 91 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC
Confidence 89999999999999999999999999999998774 567899999999999993 689999999999999999875
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS------ 478 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------ 478 (609)
. .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ......+.+|...|.+++|+|+.
T Consensus 92 ~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCcccc
Confidence 3 356678899999999999997 88999999999999999986521 12234567899999999999973
Q ss_pred ----------CcEEEEEeccCCCeEEEEECCCC---ceeEEEcCC-CCeEEEEEcCCC----CeEEEEEecCCCeEEEEE
Q psy4876 479 ----------PNVLASGGGTADRHIYFWNVSSG---ACLDSIDTK-SQVCALLWNSDY----KELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 479 ----------~~llasggGs~Dg~I~iwd~~t~---~~~~~~~~~-~~v~sl~~s~~g----~~l~~~sG~~dg~I~Iwd 540 (609)
..+|++| +.|+.|++||++.+ +++..+..| ..|.+++|+|++ ..|++ ++.|+.|+||+
T Consensus 169 ~~~~~~~~~~~~~l~sg--s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~ 244 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASG--GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWT 244 (316)
T ss_dssp --CCSCCCCCCCBEECC--BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEE
T ss_pred ccccccCccccceEEEe--cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEE
Confidence 2467776 48999999999765 355556555 589999999987 67777 44899999999
Q ss_pred CCCCc----eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 541 YPSLV----KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 541 ~~~~~----~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+.+.. ....+..|...|.+++|+|+|.+|++++.|++|+||+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 245 CDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 87631 2234567899999999999999999999999999999864
No 62
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-32 Score=280.46 Aligned_cols=250 Identities=25% Similarity=0.413 Sum_probs=202.7
Q ss_pred eeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--eeEEEe-cC-CCCceEEEEe--cCCEEEEEecCCeE
Q psy4876 327 DHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK--KKCRTM-DG-HDVRVGALAW--NTYILSSGSRCGNI 399 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~--~~~~~l-~~-h~~~V~~l~~--~~~~L~sgs~dg~I 399 (609)
..+..+. |.+.|.+++|+++ +||+|+.||.|+|||+..+ ..+..+ .+ |...|.+++| ++.+|++|+.|++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 3455566 9999999999987 9999999999999999875 455666 44 9999999999 57899999999999
Q ss_pred EEEEcCCC------CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEE
Q psy4876 400 VHHDVRSR------DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 400 ~iwd~~~~------~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~ 473 (609)
++||+... ...+..+.+|...|.+++|+|+|++|++|+.|+.|++||++.... ..+.+..+.+|...|.+++
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE--EYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCC--CCEEEEEECCCSSCEEEEE
T ss_pred EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEEeccCCCceEEEE
Confidence 99998532 235677889999999999999999999999999999999954311 1245677889999999999
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCC--ceeEEEcCC-CCeEEEEEcCC--CCeEEEEEecCCCeEEEEECCCC----
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSG--ACLDSIDTK-SQVCALLWNSD--YKELVSAHGFAQNQLIIWKYPSL---- 544 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~--~~~~~~~~~-~~v~sl~~s~~--g~~l~~~sG~~dg~I~Iwd~~~~---- 544 (609)
|+|++. +|++|+ .|+.|++||+.++ +++..+..+ ..|.+++|+|+ +..|++ |+.|+.|+|||+..+
T Consensus 161 ~~p~~~-~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~ 235 (330)
T 2hes_X 161 WHPSEA-LLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDD 235 (330)
T ss_dssp ECSSSS-EEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTS
T ss_pred ECCCCC-EEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCccc
Confidence 999874 667764 8999999999876 577777755 58999999999 556766 558999999998654
Q ss_pred ----ceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 ----VKVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 ----~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.....+.+ |...|.+++|++++ +|++++.||+|+||++.++
T Consensus 236 ~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 236 QQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred cceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34445555 89999999999765 8999999999999998765
No 63
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.5e-31 Score=285.31 Aligned_cols=272 Identities=21% Similarity=0.374 Sum_probs=238.8
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~ 349 (609)
.+.++.++.+.+++++.||.|++||+.+ +. .+..+. |.+.|.+++|+ +++
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~--~~~ 171 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVT-------------------------GK--CLRTLVGHTGGVWSSQMR--DNI 171 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTT-------------------------CC--EEEECCCCSSCEEEEEEE--TTE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCC-------------------------Cc--EEEEEcCCCCCEEEEEec--CCE
Confidence 3567888766688899999999999987 44 344555 89999999997 679
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
|++|+.||.|++||+.+++.+..+.+|...|.++.|++..|++|+.||.|++||+.++ ..+..+.+|...|.+++| +
T Consensus 172 l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~--~ 248 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQY--D 248 (445)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSC-CEEEEEECCSSCEEEEEE--C
T ss_pred EEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCcccEEEEEE--C
Confidence 9999999999999999999999999999999999999999999999999999999987 477888899999999999 7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
+.+|++|+.||.|++||++++ ..+..+.+|...|.+++| ++ ..+++|+ .|+.|++||+.+++++..+..
T Consensus 249 ~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~--~~-~~l~~~~--~d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 249 GRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQF--DG-IHVVSGS--LDTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp SSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEEE--CS-SEEEEEE--TTSCEEEEETTTCCEEEEECC
T ss_pred CCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEEE--CC-CEEEEEe--CCCeEEEEECCCCCEEEEEcC
Confidence 889999999999999999987 788889999999999999 44 4666664 899999999999999998876
Q ss_pred CC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC---CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 510 KS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG---HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 510 ~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+. .+.++.+ ++.++++ |+.||.|++||+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||+.+
T Consensus 318 ~~~~v~~~~~--~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 318 HQSLTSGMEL--KDNILVS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 391 (445)
T ss_dssp CCSCEEEEEE--ETTEEEE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred CcccEEEEEE--eCCEEEE--EeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCC
Confidence 54 6777776 4667777 45899999999999999999986 88899999995 67999999999999999998
Q ss_pred Cccchh
Q psy4876 586 KVKSKK 591 (609)
Q Consensus 586 ~~~~~k 591 (609)
++....
T Consensus 392 ~~~~~~ 397 (445)
T 2ovr_B 392 GEFIRN 397 (445)
T ss_dssp CCEEEE
T ss_pred Cceeee
Confidence 876543
No 64
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.1e-32 Score=276.56 Aligned_cols=252 Identities=20% Similarity=0.334 Sum_probs=212.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~ 405 (609)
|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|.+++|+ +.+|++|+.||.|++||++
T Consensus 10 H~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred cccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 8999999999999999999999999999999876 5677888999999999993 7899999999999999998
Q ss_pred CCC--------eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceE-------eecCCccc
Q psy4876 406 SRD--------HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-------SLSRHQAA 468 (609)
Q Consensus 406 ~~~--------~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~ 468 (609)
.+. ..+..+..|...|.+++|+|+ +.+|++++.||.|++||++++.......... ....|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 763 457778899999999999999 9999999999999999999874322111100 11257888
Q ss_pred EEEEEEcCC--CCcEEEEEeccCCCeEEEEECCCCce--eEEEcC-CCCeEEEEEcCCC----CeEEEEEecCCCeEEEE
Q psy4876 469 VKAIAWCPW--SPNVLASGGGTADRHIYFWNVSSGAC--LDSIDT-KSQVCALLWNSDY----KELVSAHGFAQNQLIIW 539 (609)
Q Consensus 469 V~~l~~sp~--~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~-~~~v~sl~~s~~g----~~l~~~sG~~dg~I~Iw 539 (609)
+.+++|+|+ ...++++++ .|+.+.+|+...+.. +..+.. ...|.+++|+|++ .+|++ |+.||.|++|
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~iw 245 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIRIF 245 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEEEE
T ss_pred eeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEEEE
Confidence 999999997 345676664 799998888887775 455554 4589999999998 67777 4489999999
Q ss_pred ECCCC----------------------------------------------ceEEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 540 KYPSL----------------------------------------------VKVAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 540 d~~~~----------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
|+..+ +.+..+.+|...|++++|+|++++|++++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~ 325 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAG 325 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEE
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEec
Confidence 98764 56777889999999999999999999999
Q ss_pred CCCCEEEEEcCCCccc
Q psy4876 574 ADETLRLWKIFEKVKS 589 (609)
Q Consensus 574 ~Dg~I~iWdl~~~~~~ 589 (609)
.||.|+||++..+...
T Consensus 326 ~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 326 DDGKVRLWKATYSNEF 341 (351)
T ss_dssp TTSCEEEEEECTTSCE
T ss_pred CCCcEEEEecCcCcch
Confidence 9999999999876543
No 65
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.9e-32 Score=311.29 Aligned_cols=279 Identities=18% Similarity=0.287 Sum_probs=243.6
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.|.+++|+|++ +++++.||.|+|||+.+ +.. +..+. |...|.+++|+|++
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-------------------------~~~--~~~~~~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYET-------------------------QVE--VRSIQVTETPVRAGKFIARK 67 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTT-------------------------TEE--EEEEECCSSCEEEEEEEGGG
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCC-------------------------Cce--EEEEecCCCcEEEEEEeCCC
Confidence 58999999997 66677899999999987 443 33444 89999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++......+.+|...|.+++
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 99999999999999999999999999999999999999 4789999999999999999987667788899999999999
Q ss_pred Ecc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-cccEEEEEEcC--CCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 426 WSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-QAAVKAIAWCP--WSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 426 ~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
|+| ++.+|++++.||.|++||+..+ .....+..+ ...+.+++|+| ++. +++++ +.|+.|++||+.++
T Consensus 148 ~~p~~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~--~~dg~i~~~d~~~~ 218 (814)
T 3mkq_A 148 FNPKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVNYVDYYPLPDKP-YMITA--SDDLTIKIWDYQTK 218 (814)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCCCEEEECCSTTCC-EEEEE--CTTSEEEEEETTTT
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCC------cceeEEecCCCCCEEEEEEEECCCCC-EEEEE--eCCCEEEEEECCCC
Confidence 999 8999999999999999999877 445555544 48899999999 664 56665 38999999999999
Q ss_pred ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCE-EEEEECCCCEE
Q psy4876 502 ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETT-VLSAGADETLR 579 (609)
Q Consensus 502 ~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-L~s~s~Dg~I~ 579 (609)
+++..+..+ ..|.+++|+|++.+++++ +.||.|++||..+++.+..+..|...|.+++|+|+|.. +++++.|+.+.
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISG--SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEE--ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEE
Confidence 999988755 589999999999999884 48999999999999999999999999999999999873 35555677899
Q ss_pred EEEcCCCc
Q psy4876 580 LWKIFEKV 587 (609)
Q Consensus 580 iWdl~~~~ 587 (609)
+|++....
T Consensus 297 ~~~~~~~~ 304 (814)
T 3mkq_A 297 VLSLGNDE 304 (814)
T ss_dssp EEECSCCS
T ss_pred EEEcCCCC
Confidence 99987654
No 66
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.3e-31 Score=285.51 Aligned_cols=270 Identities=20% Similarity=0.320 Sum_probs=240.3
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
..|.+++|+++-+++++.|+.|++||+.+ +. .+..+. |...|.+++|+ +.
T Consensus 160 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~~~~~--~~ 210 (445)
T 2ovr_B 160 GGVWSSQMRDNIIISGSTDRTLKVWNAET-------------------------GE--CIHTLYGHTSTVRCMHLH--EK 210 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEE--TT
T ss_pred CCEEEEEecCCEEEEEeCCCeEEEEECCc-------------------------Cc--EEEEECCCCCcEEEEEec--CC
Confidence 35788999977788899999999999987 43 344555 88999999995 67
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEcc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSP 428 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 428 (609)
+|++|+.||.|++||+.+++.+..+.+|...|.+++|++.+|++|+.||.|++||+++. ..+..+.+|...|.+++|
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~-- 287 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF-- 287 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--
Confidence 89999999999999999999999999999999999999999999999999999999986 578888999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
++.++++|+.|+.|++||++++ +.+..+.+|...+.++.+++ .++++|+ .|+.|++||+.+++++..+.
T Consensus 288 ~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~v~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 288 DGIHVVSGSLDTSIRVWDVETG------NCIHTLTGHQSLTSGMELKD---NILVSGN--ADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp CSSEEEEEETTSCEEEEETTTC------CEEEEECCCCSCEEEEEEET---TEEEEEE--TTSCEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEeCCCeEEEEECCCC------CEEEEEcCCcccEEEEEEeC---CEEEEEe--CCCeEEEEECCCCcEEEEEc
Confidence 7899999999999999999988 78888999999999998854 4677764 89999999999999999987
Q ss_pred C----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE-----eCCCCCEEEEEEeCCCCEEEEEECCCC--
Q psy4876 509 T----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL-----HGHSARVLNLAMSPDETTVLSAGADET-- 577 (609)
Q Consensus 509 ~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~L~s~s~Dg~-- 577 (609)
. ...|.+++|+ +.++++ |+.||.|+|||+.+++.+..+ .+|.+.|++++|+|++.+|++|+.||+
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~ 432 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVIT--SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 432 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSC
T ss_pred cCCCCCCCEEEEEEC--CCEEEE--EeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCc
Confidence 4 4589999995 567777 458999999999999999888 468889999999999999999999998
Q ss_pred --EEEEEcCCC
Q psy4876 578 --LRLWKIFEK 586 (609)
Q Consensus 578 --I~iWdl~~~ 586 (609)
|.|||+...
T Consensus 433 ~~l~v~df~~~ 443 (445)
T 2ovr_B 433 TKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 999999865
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-31 Score=323.94 Aligned_cols=277 Identities=21% Similarity=0.353 Sum_probs=243.9
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.||.|+|||+.+ +. .+..+. |.+.|.+++|+|
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-------------------------~~--~~~~~~~h~~~v~~~~~s~ 667 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAET-------------------------GE--KLLDIKAHEDEVLCCAFSS 667 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------CC--EEEEECCCSSCEEEEEECT
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCC-------------------------CC--EEEEeccCCCCEEEEEEec
Confidence 4569999999997 66688899999999987 44 344555 899999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV 421 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 421 (609)
+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|. +.++++|+.||.|++||+.++ ..+..+.+|...|
T Consensus 668 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQK-ECRNTMFGHTNSV 746 (1249)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSS-SEEEEECCCSSCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCc-chhheecCCCCCE
Confidence 99999999999999999999999999999999999999993 458999999999999999987 4778889999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------------CCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------------RHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------------~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.+++|+|++++|++|+.||.|++||+.++ .....+. .+...+.+++|+|++..+++ +
T Consensus 747 ~~~~~sp~~~~l~s~s~dg~v~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~-~--- 816 (1249)
T 3sfz_A 747 NHCRFSPDDELLASCSADGTLRLWDVRSA------NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV-A--- 816 (1249)
T ss_dssp EEEEECSSTTEEEEEESSSEEEEEEGGGT------EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE-E---
T ss_pred EEEEEecCCCEEEEEECCCeEEEEeCCCC------cccceecccccccccCCccccccceEEEEEECCCCCEEEE-E---
Confidence 99999999999999999999999999877 3333221 12346889999999965554 4
Q ss_pred CCCeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg 566 (609)
.++.+.+||+.++..+..+. +...+.+++|+|++..+++ +..++.|++||+.++..+..+.+|...|.+++|+|+|
T Consensus 817 ~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 817 AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp ETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred cCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 27899999999999888775 3468999999999999998 5589999999999999999999999999999999999
Q ss_pred CEEEEEECCCCEEEEEcCC
Q psy4876 567 TTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~~ 585 (609)
.+|++++.||.|++|++..
T Consensus 895 ~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHH
T ss_pred CEEEEEeCCCeEEEEEccc
Confidence 9999999999999999864
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3e-31 Score=276.25 Aligned_cols=248 Identities=21% Similarity=0.309 Sum_probs=206.0
Q ss_pred eeeeeec-CCCCeEEEEE-----cc-CCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEe--cCCEE
Q psy4876 327 DHLMDLE-GNENVCSVAW-----IQ-EGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAW--NTYIL 390 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~-----sp-dg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~--~~~~L 390 (609)
.....+. |.+.|++++| ++ ++.+||+|+.|+.|+|||+... .....+.+|...|.+++| ++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 3445566 9999999999 76 8999999999999999999743 456788999999999999 47899
Q ss_pred EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee---cCCcc
Q psy4876 391 SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL---SRHQA 467 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~ 467 (609)
++|+.|++|++||++++ ..+..+.+|...|.+++|+|++++|++|+.|+.|++||+... ..... ..|..
T Consensus 92 ~s~s~D~~v~lwd~~~~-~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-------~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-------CKFSSAEKENHSD 163 (343)
T ss_dssp EEEETTSEEEEEETTSS-CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-------EEEECCTTTSCSS
T ss_pred EEEcCCCcEEEEECCCC-cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-------ceeeeecccCCCc
Confidence 99999999999999987 477888999999999999999999999999999999999743 22222 36889
Q ss_pred cEEEEEEcCCCC---------cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 468 AVKAIAWCPWSP---------NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 468 ~V~~l~~sp~~~---------~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
.|.+++|+|++. .++++++ .|+.|++||. .+.....+..+ ..|.+++|+|++++|++ |+.|+.|+
T Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~ 238 (343)
T 2xzm_R 164 WVSCVRYSPIMKSANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLL 238 (343)
T ss_dssp CEEEEEECCCCCSCSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEE
T ss_pred eeeeeeeccccccccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEE
Confidence 999999999873 4677764 8999999994 45666666544 58999999999999998 44899999
Q ss_pred EEECCC-CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 538 IWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 538 Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
|||+.. ......+ .+...|.+++|+|++.+|+ ++.|+.|++|++.+....
T Consensus 239 iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~ 289 (343)
T 2xzm_R 239 IWDILNLTYPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKA 289 (343)
T ss_dssp EEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSC
T ss_pred EEECCCCcccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCC
Confidence 999944 3444444 3556799999999998776 456889999999876543
No 69
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3e-32 Score=286.86 Aligned_cols=286 Identities=14% Similarity=0.116 Sum_probs=209.1
Q ss_pred ceeEEEEEecCCC-eEE-EEcC-------CeEEEEeCCCCCCCceEEecCCccccccccccccccceee--eeeec-CCC
Q psy4876 269 DYYLNLIDWSHFN-VLA-VALG-------GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDH--LMDLE-GNE 336 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla-~s~d-------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~-h~~ 336 (609)
.|.|.+++|+|++ +|+ ||.| +.|+||++........ ..... ...+. |..
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~ 74 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-------------------EQFHILSEFALEDNDD 74 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH-------------------HHEEEEEEEECCTTSC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCccee-------------------eeeeeeeEEEccCCCC
Confidence 4569999999997 444 4433 3599999876211100 11111 22344 777
Q ss_pred CeEEEEEccCCCEEEEEe-----------CCCeEEEEeCCCCee----EEEe-----cCCCCceEEEEe--cCCEEEEE-
Q psy4876 337 NVCSVAWIQEGYMLGVGT-----------SLGTVQLWDVSAKKK----CRTM-----DGHDVRVGALAW--NTYILSSG- 393 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs-----------~dg~I~iwd~~~~~~----~~~l-----~~h~~~V~~l~~--~~~~L~sg- 393 (609)
.|.+++++ ++.+++|. .|+.+++|++..... +... ..+...+.+++| +|.+|+++
T Consensus 75 ~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 75 SPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp CCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred ceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 88887764 55676654 467899999865432 1222 124456888999 57776644
Q ss_pred -ecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 394 -SRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 394 -s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
+.|++|++||+.+.. .+..+. |...|.+++|+|||++|++++.| .+.+|+..++.. ........|...|.++
T Consensus 153 ~~~d~~i~iwd~~~~~-~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~----~~~~~~~~~~~~v~~v 225 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLT-EKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC----IARKTDFDKNWSLSKI 225 (365)
T ss_dssp SCSSCEEEEEETTTTE-EEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE----EEEECCCCTTEEEEEE
T ss_pred CCCCCEEEEeECCCCc-EEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc----eeeeecCCCCCCEEEE
Confidence 478999999999874 555554 77889999999999999999865 566666666521 1223445688899999
Q ss_pred EEcCCCCcEEEEEeccCCC----eEEEEECCCCcee----EEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 473 AWCPWSPNVLASGGGTADR----HIYFWNVSSGACL----DSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg----~I~iwd~~t~~~~----~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+|+|++..+++.+ .|+ .+++||+..+... ..+.. ...|++++|+|+|++|++ |+.|+.|+|||+.+
T Consensus 226 ~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 226 NFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKD 300 (365)
T ss_dssp EEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTT
T ss_pred EEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCC
Confidence 9999986555443 343 6889998766542 23333 458999999999999998 45899999999999
Q ss_pred CceEEEE-eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 544 LVKVAEL-HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 544 ~~~~~~l-~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++++..+ .+|...|++|+|+|||++||||+.|++|+||++....
T Consensus 301 ~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 9999886 7899999999999999999999999999999996543
No 70
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-31 Score=275.35 Aligned_cols=273 Identities=15% Similarity=0.129 Sum_probs=228.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccc--eeeeeeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA--IDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~h~~~V~~v~~s 344 (609)
.-.|.+++|+|++ +++++.|+.|+||++.+ +. ........|...|.+++|+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~-------------------------~~~~~~~~~~~~~~~~v~~~~~~ 65 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDI-------------------------QAKNVDLLQSLRYKHPLLCCNFI 65 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEET-------------------------TTTEEEEEEEEECSSCEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCC-------------------------CCccccceeeeecCCceEEEEEC
Confidence 3458999999985 67788899999999987 33 1112222488999999999
Q ss_pred cCCC-EEEEEeCCCeEEEEeC-CCCeeEEEecC--CCCceEEEEec-CCEEEEEecCCeEEEEEcCC---------CCee
Q psy4876 345 QEGY-MLGVGTSLGTVQLWDV-SAKKKCRTMDG--HDVRVGALAWN-TYILSSGSRCGNIVHHDVRS---------RDHK 410 (609)
Q Consensus 345 pdg~-~Lasgs~dg~I~iwd~-~~~~~~~~l~~--h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~---------~~~~ 410 (609)
|+++ +|++|+.||.|++||+ .+++ ...+.+ |...|.+++|+ +.+|++++.||.|++||+++ .. .
T Consensus 66 ~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~ 143 (342)
T 1yfq_A 66 DNTDLQIYVGTVQGEILKVDLIGSPS-FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-N 143 (342)
T ss_dssp ESSSEEEEEEETTSCEEEECSSSSSS-EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-C
T ss_pred CCCCcEEEEEcCCCeEEEEEeccCCc-eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-e
Confidence 9999 9999999999999999 7764 477888 99999999997 79999999999999999986 42 3
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEEEcC-CCCcEEEEEecc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCP-WSPNVLASGGGT 488 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~llasggGs 488 (609)
+..+. |...|.+++|++++ +++++.|+.|++||++. +.. ........|...|.+++|+| ++. ++++++
T Consensus 144 ~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~~~i~~i~~~~~~~~-~l~~~~-- 213 (342)
T 1yfq_A 144 SNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDD----NGTIEESGLKYQIRDVALLPKEQE-GYACSS-- 213 (342)
T ss_dssp SSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTC----CCEEEECSCSSCEEEEEECSGGGC-EEEEEE--
T ss_pred eeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccc----cceeeecCCCCceeEEEECCCCCC-EEEEEe--
Confidence 33444 88999999999987 99999999999999997 521 23344556888999999999 875 566653
Q ss_pred CCCeEEEEECCCC------ceeEEEcCCC----------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 489 ADRHIYFWNVSSG------ACLDSIDTKS----------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 489 ~Dg~I~iwd~~t~------~~~~~~~~~~----------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
.|+.|++||+... +....+..+. .|.+++|+|++++|+++ ..||.|++||+.+++.+..+.+
T Consensus 214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~ 291 (342)
T 1yfq_A 214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA--GSDGIISCWNLQTRKKIKNFAK 291 (342)
T ss_dssp TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE--ETTSCEEEEETTTTEEEEECCC
T ss_pred cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe--cCCceEEEEcCccHhHhhhhhc
Confidence 7999999999876 7777776542 89999999999999984 4899999999999999999999
Q ss_pred C-CCCEEEEEEeCCCCEEEEEECCCC-EEEEE
Q psy4876 553 H-SARVLNLAMSPDETTVLSAGADET-LRLWK 582 (609)
Q Consensus 553 h-~~~V~~l~~spdg~~L~s~s~Dg~-I~iWd 582 (609)
| ...|.+++ |++.+|++++.||+ .+.|.
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 8 99999999 99999999999998 44444
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=278.15 Aligned_cols=245 Identities=21% Similarity=0.330 Sum_probs=209.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC--CCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS--AKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|++++||+|+.||.|+|||+. +++.+..+.+|...|.+++|. +.+|++|+.||.|++||+.++
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 89999999999999999999999999999998 567788899999999999994 799999999999999999986
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC-------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW------- 477 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------- 477 (609)
. ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... .....+..|...|.+++|+|.
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEECCTTCEEEEEECCCC------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecCCCCceEEEEEcCcccccccc
Confidence 4 256777889999999999999 99999999999999999987632 344567789999999999994
Q ss_pred -----CCcEEEEEeccCCCeEEEEECCCCc----eeEEEcC-CCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCC
Q psy4876 478 -----SPNVLASGGGTADRHIYFWNVSSGA----CLDSIDT-KSQVCALLWNSD---YKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 478 -----~~~llasggGs~Dg~I~iwd~~t~~----~~~~~~~-~~~v~sl~~s~~---g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
...++++++ .|+.|++||++++. ++..+.. ...|.+++|+|+ +.+|+++ +.|+.|+|||+.++
T Consensus 166 ~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~--~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 166 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV--SQDRTCIIWTQDNE 241 (379)
T ss_dssp ----CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE--ETTSCEEEEEESST
T ss_pred ccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEE--eCCCEEEEEeCCCC
Confidence 235666664 89999999998765 3344554 458999999999 7888884 48999999999886
Q ss_pred c---eEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 V---KVAEL--HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 ~---~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
. ....+ ..|...|++++|+|+|++|++++.||.|++|++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 4 22222 348899999999999999999999999999999843
No 72
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-31 Score=270.72 Aligned_cols=242 Identities=19% Similarity=0.341 Sum_probs=200.5
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..|++++|+|++ +++++.|+.|+|||+.. .....+..+. |.+.|.+++|+++
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~-------------------------~~~~~~~~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCS-------------------------SCBCCCEEECCCSSCEEEEEECCG
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCC-------------------------CCcEEEEEEccccCCeEEEEecCC
Confidence 458999999986 77789999999999976 3334555666 9999999999864
Q ss_pred --CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe-eEEEEccC
Q psy4876 347 --GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH-KVALLQNH 417 (609)
Q Consensus 347 --g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~-~~~~~~~h 417 (609)
+++||+|+.||+|+|||+.+++ .+..+.+|...|.+++|+ +.+|++++.||.|++||++.... ....+.+|
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h 144 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECC
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecc
Confidence 8999999999999999998874 567788999999999994 57999999999999999987532 24667899
Q ss_pred CCCeEEEEEccC-------------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcEE
Q psy4876 418 TQEVCGLKWSPD-------------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNVL 482 (609)
Q Consensus 418 ~~~V~~l~~spd-------------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~ll 482 (609)
...|.+++|+|+ +++|++|+.|+.|++||++.+... ......+.+|...|.+++|+|++ ..+|
T Consensus 145 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~--~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--EEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 999999999997 579999999999999999876210 12556788999999999999986 4678
Q ss_pred EEEeccCCCeEEEEECCCCc--e-eEEE---cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 483 ASGGGTADRHIYFWNVSSGA--C-LDSI---DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~--~-~~~~---~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
++++ .|+.|++||+.++. . ...+ .+...|.+++|+|++++|++++ .|+.|+||+..
T Consensus 223 as~s--~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~--~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKEN 284 (297)
T ss_dssp EEEE--TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE--TTSCEEEEEEC
T ss_pred EEEE--CCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc--CCCcEEEEEEC
Confidence 8874 89999999998653 1 2222 2345899999999999999854 79999999975
No 73
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.6e-31 Score=294.42 Aligned_cols=280 Identities=15% Similarity=0.252 Sum_probs=242.8
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc--ceeeeeeec-CCCC-eEEEEE
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR--AIDHLMDLE-GNEN-VCSVAW 343 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~-h~~~-V~~v~~ 343 (609)
...|.+++|+|++ +++++.++.|+|||+.+ + ....+..+. |... |++++|
T Consensus 18 ~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~-------------------------~~~~~~~~~~~~~h~~~~v~~~~~ 72 (615)
T 1pgu_A 18 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDD-------------------------GDSKVPPVVQFTGHGSSVVTTVKF 72 (615)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCS-------------------------SCCSSCSEEEECTTTTSCEEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCeEEEEECCC-------------------------CCCccccceEEecCCCceEEEEEE
Confidence 3458889999996 77777799999999987 3 112344555 8899 999999
Q ss_pred cc--CCCEEEEEeCCCeEEEEeCCCC--------eeEEEecCCCCceEEEEe--cCCEEEEEecC----CeEEEEEcCCC
Q psy4876 344 IQ--EGYMLGVGTSLGTVQLWDVSAK--------KKCRTMDGHDVRVGALAW--NTYILSSGSRC----GNIVHHDVRSR 407 (609)
Q Consensus 344 sp--dg~~Lasgs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d----g~I~iwd~~~~ 407 (609)
+| ++++||+|+.||.|+|||+.++ +.+..+..|...|.+++| ++.+|++++.+ +.|.+||. +
T Consensus 73 sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~ 150 (615)
T 1pgu_A 73 SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G 150 (615)
T ss_dssp CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C
T ss_pred CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C
Confidence 99 9999999999999999999754 777888899999999999 57899999987 78999983 2
Q ss_pred CeeEEEEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc---cEEEEEEcCC-CCcEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA---AVKAIAWCPW-SPNVL 482 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~-~~~ll 482 (609)
..+..+.+|...|.+++|+|++. +|++++.|+.|++||+.++ +.+..+..|.. .|.+++|+|+ + .++
T Consensus 151 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l 222 (615)
T 1pgu_A 151 -NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------KFSASDRTHHKQGSFVRDVEFSPDSG-EFV 222 (615)
T ss_dssp -CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB------EEEEEECSSSCTTCCEEEEEECSTTC-CEE
T ss_pred -CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------ceeeeecccCCCCceEEEEEECCCCC-CEE
Confidence 46788899999999999999998 8999999999999999887 78888999999 9999999999 6 566
Q ss_pred EEEeccCCCeEEEEECCCCceeEEE-----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC----
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSI-----DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH---- 553 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~-----~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h---- 553 (609)
++++ .|+.|++||+.+++.+..+ .+...|.+++|+ ++.+++++ ..|+.|++||+.+++.+..+..|
T Consensus 223 ~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~ 297 (615)
T 1pgu_A 223 ITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV--GADATIRVWDVTTSKCVQKWTLDKQQL 297 (615)
T ss_dssp EEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE--ETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred EEEe--CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE--cCCCcEEEEECCCCcEEEEEcCCCCcc
Confidence 6653 7999999999999999998 455699999999 99999985 48999999999999999998877
Q ss_pred CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 554 SARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
...+.++.|. ++.+|++++.|+.|++||+..+...
T Consensus 298 ~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~ 332 (615)
T 1pgu_A 298 GNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVL 332 (615)
T ss_dssp GGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEE
T ss_pred cCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEE
Confidence 3678888886 8999999999999999999875543
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-30 Score=281.79 Aligned_cols=270 Identities=18% Similarity=0.225 Sum_probs=233.7
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc-
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ- 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp- 345 (609)
...|.+++|++++ +++++.||.|++||+.+ +. .+..+. |...|.+++|++
T Consensus 162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~-------------------------~~--~~~~~~~h~~~v~~l~~~~~ 214 (464)
T 3v7d_B 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKK-------------------------GC--CTHVFEGHNSTVRCLDIVEY 214 (464)
T ss_dssp SSCEEEEEECSTTEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEEES
T ss_pred CcCEEEEEEcCCCEEEEEeCCCCEEEEECCC-------------------------Cc--EEEEECCCCCccEEEEEecC
Confidence 4468999999987 66789999999999987 44 344555 899999999994
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEEecCCCCceEEEEecCCEEEEEecCCeEEE
Q psy4876 346 -EGYMLGVGTSLGTVQLWDVSAKK-----------------------KCRTMDGHDVRVGALAWNTYILSSGSRCGNIVH 401 (609)
Q Consensus 346 -dg~~Lasgs~dg~I~iwd~~~~~-----------------------~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~i 401 (609)
++.+|++|+.||.|++||+.++. .+..+.+|...|.++..++.+|++|+.||.|++
T Consensus 215 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 215 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 77999999999999999998764 256788999999999999999999999999999
Q ss_pred EEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 402 HDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 402 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
||+++. ..+..+.+|...|.+++|+|++++|++|+.||.|++||++++ +++..+.+|...|.+++|++ ..
T Consensus 295 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~------~~~~~~~~h~~~v~~~~~~~---~~ 364 (464)
T 3v7d_B 295 WDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG------ELMYTLQGHTALVGLLRLSD---KF 364 (464)
T ss_dssp EETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECS---SE
T ss_pred EECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------cEEEEEeCCCCcEEEEEEcC---CE
Confidence 999986 578889999999999999999999999999999999999988 78899999999999999984 46
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNL 560 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l 560 (609)
+++++ .|+.|++||+.++...........+..++|++++.+++++ . |+.|+|||+.+++.+.. +..|...|.++
T Consensus 365 l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v 439 (464)
T 3v7d_B 365 LVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG--S-ENQFNIYNLRSGKLVHANILKDADQIWSV 439 (464)
T ss_dssp EEEEE--TTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEE--E-TTEEEEEETTTCCEEESCTTTTCSEEEEE
T ss_pred EEEEe--CCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEe--c-CCeEEEEECCCCcEEehhhccCCCcEEEE
Confidence 77764 8999999999999888888777888999999999998884 3 89999999999999876 56789999999
Q ss_pred EEeCCCCEEEEEECCCCEEEE
Q psy4876 561 AMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iW 581 (609)
+|+ ++.++++++.||.+.+|
T Consensus 440 ~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 440 NFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEE-TTEEEEEEEETTEEEEE
T ss_pred Eec-CCEEEEEEEeCCeEEEE
Confidence 997 33445555666655544
No 75
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-31 Score=309.78 Aligned_cols=177 Identities=10% Similarity=0.059 Sum_probs=139.3
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCC--------CCCceEEecCCcccccccc------ccccccceeeeeeecC
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESD--------SNSKYIICQSPLVQELTSK------CIQDNRAIDHLMDLEG 334 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~--------~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~h 334 (609)
.|++|+|+|++ +++++.||.|+||+.... ......+.|+| +..+++. .+|+......+..+.|
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~ 97 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFV 97 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEEC
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcC
Confidence 48889999986 555777899999987653 22334567777 4434332 2344333344555557
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeE-----------EEecCCCCceEEEEecC---CEEEEEecCCeEE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKC-----------RTMDGHDVRVGALAWNT---YILSSGSRCGNIV 400 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~-----------~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~ 400 (609)
.+.|++++|+|++++|++|+.||.|++||+.+++.. ..+.+|...|.+++|++ ..|++|+.||.|
T Consensus 98 ~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 98 PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 789999999999999999999999999999988754 23467999999999964 589999999999
Q ss_pred EEEcCCCCeeEEEEccC------------------CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 401 HHDVRSRDHKVALLQNH------------------TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h------------------~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
+||+++. ..+..+..| ...|.+++|+|+|.+||+|+.||.|++||++++
T Consensus 177 lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 177 TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999986 466666655 577999999999999999999999999999765
No 76
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=4.1e-31 Score=284.19 Aligned_cols=258 Identities=21% Similarity=0.426 Sum_probs=218.8
Q ss_pred cceeeeeeecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCC----------CeeEEEecCCCCceEEEEec--CC-E
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSA----------KKKCRTMDGHDVRVGALAWN--TY-I 389 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~~--~~-~ 389 (609)
+.+.....+.|.+.|++++|+|+ +.+||+|+.||.|+|||+.. ...+..+.+|...|.+++|+ +. +
T Consensus 117 ~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 117 GKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp -CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred CceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 34444455559999999999997 68999999999999999986 57788899999999999995 44 9
Q ss_pred EEEEecCCeEEEEEcCCCCe------eEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 390 LSSGSRCGNIVHHDVRSRDH------KVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 390 L~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.||.|++||++.+.. ..++..+
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~---~~~~~~~ 273 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT---SKPSHTV 273 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS---SSCSEEE
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC---CcceeEe
Confidence 99999999999999987421 1456778999999999999 788999999999999999997631 1466777
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEE
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWK 540 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd 540 (609)
..|...|.+++|+|++..++++|+ .|+.|++||+++ +.++..+.. ...|.+++|+|++..++++ +..|+.|+|||
T Consensus 274 ~~~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd 350 (430)
T 2xyi_A 274 DAHTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWD 350 (430)
T ss_dssp ECCSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEE
T ss_pred ecCCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEe
Confidence 789999999999999988898875 899999999997 566777764 4689999999999764443 34799999999
Q ss_pred CCC--------------CceEEEEeCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCc
Q psy4876 541 YPS--------------LVKVAELHGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 541 ~~~--------------~~~~~~l~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~ 587 (609)
+.. ...+..+.+|...|.+++|+|++. +|++++.||.|+||++....
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 351 LSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp GGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred CCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 976 366777889999999999999999 99999999999999997644
No 77
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=9.9e-31 Score=271.62 Aligned_cols=281 Identities=12% Similarity=0.159 Sum_probs=224.8
Q ss_pred ceeEEEEEecCC---C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEE
Q psy4876 269 DYYLNLIDWSHF---N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVA 342 (609)
Q Consensus 269 ~~~v~~l~wsp~---~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~ 342 (609)
...|++|+|+|+ + +++++.||.|+|||+.+ ........+. |...|++++
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~ 93 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD-------------------------SGQTIPKAQQMHTGPVLDVC 93 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT-------------------------TSCEEEEEEEECSSCEEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC-------------------------CCceeEEEeccccCCEEEEE
Confidence 446999999998 3 66688899999999986 2333324444 899999999
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--c--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--N--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
|+|++++|++|+.||.|++||+.+++.+. +..|...|.+++| + +.+|++++.||.|++||++++. .+..+..|.
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~ 171 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLPE 171 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECSS
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecCC
Confidence 99999999999999999999999988776 5569999999999 4 5789999999999999999874 666676554
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCc---EEEEEeccCCCeEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPN---VLASGGGTADRHIY 494 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~---llasggGs~Dg~I~ 494 (609)
.+.++.+.+ ..+++++.|+.+.+||++... ...... ..+...+.++++.++... .++++ +.|+.|+
T Consensus 172 -~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dg~i~ 241 (368)
T 3mmy_A 172 -RCYCADVIY--PMAVVATAERGLIVYQLENQP-----SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG--SIEGRVA 241 (368)
T ss_dssp -CEEEEEEET--TEEEEEEGGGCEEEEECSSSC-----EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE--ETTSEEE
T ss_pred -CceEEEecC--CeeEEEeCCCcEEEEEecccc-----chhhhccccccCCCceEEEcccCCCCCCeEEEe--cCCCcEE
Confidence 566666664 578899999999999998763 122222 223445566666554432 25555 3899999
Q ss_pred EEECCCC---ceeEEEcCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 495 FWNVSSG---ACLDSIDTKS-------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 495 iwd~~t~---~~~~~~~~~~-------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
+||+... ..+..+..+. .|.+++|+|++++|+++ +.||.|+|||+.+++.+..+.+|...|.
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATV--GSDGRFSFWDKDARTKLKTSEQLDQPIS 319 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEE--ETTSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEE--ccCCeEEEEECCCCcEEEEecCCCCCce
Confidence 9999987 4566666554 59999999999999984 4899999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+++|+|+|.+|++++.|+..+.|++...+.
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~ 349 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFYNPQK 349 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGCCTTS
T ss_pred EEEECCCCCeEEEEecccccccccccCCCc
Confidence 999999999999999999877777665443
No 78
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6e-31 Score=277.66 Aligned_cols=253 Identities=16% Similarity=0.208 Sum_probs=217.9
Q ss_pred eeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe------eEEEecCCCCceEEEEe--c----C---CEEEEE
Q psy4876 330 MDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK------KCRTMDGHDVRVGALAW--N----T---YILSSG 393 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~--~----~---~~L~sg 393 (609)
..+. |.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++| + + .+|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 3444 999999999998 799999999999999999887 78889999999999999 4 7 899999
Q ss_pred ecCCeEEEEEcCCCCee-----EEEEccC-----CCCeEEEEEc----cCCCE-EEEEeCCCcEEEEeCCC------CCC
Q psy4876 394 SRCGNIVHHDVRSRDHK-----VALLQNH-----TQEVCGLKWS----PDGRY-LASGGNDNLLNIWSGVP------GQH 452 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~s----pdg~~-lasgs~Dg~I~iwd~~~------~~~ 452 (609)
+.||.|++||+.+.. . ...+..| ...|.+++|+ |++.+ |++++.||.|++||+.. +..
T Consensus 88 ~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 88 SFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp ETTSCEEEEEEEECT-TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred cCCCCEEEEEccCCc-ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 999999999998764 3 7778888 5899999999 99999 99999999999999987 421
Q ss_pred CCCccceEee-------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-------CCCeEEEEE
Q psy4876 453 TFSTQPIHSL-------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-------KSQVCALLW 518 (609)
Q Consensus 453 ~~~~~~~~~~-------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-------~~~v~sl~~ 518 (609)
.. ..+...+ ..|...|.+++|+|++ +++++ +.|+.|++||+++++.+..+.. ...+.+++|
T Consensus 167 ~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~ 241 (397)
T 1sq9_A 167 LN-WSPTLELQGTVESPMTPSQFATSVDISERG--LIATG--FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 241 (397)
T ss_dssp TC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEE--CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred ee-ccCcceeeeeeccccCCCCCceEEEECCCc--eEEEE--eCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence 10 1111155 4588999999999988 66666 4899999999999999999887 679999999
Q ss_pred cCCCCeEEEEEecCC---CeEEEEECCCCceEEEEeC-------------CCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 519 NSDYKELVSAHGFAQ---NQLIIWKYPSLVKVAELHG-------------HSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 519 s~~g~~l~~~sG~~d---g~I~Iwd~~~~~~~~~l~~-------------h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
+|++.+|++++ .| +.|++||+.+++.+..+.+ |...|.+++|+|++.+|++++.||.|+|||
T Consensus 242 ~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 242 SPQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp CSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCCCEEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 99999999854 68 9999999999999999998 999999999999999999999999999999
Q ss_pred cCCCccchhh
Q psy4876 583 IFEKVKSKKK 592 (609)
Q Consensus 583 l~~~~~~~k~ 592 (609)
+..+......
T Consensus 320 ~~~~~~~~~~ 329 (397)
T 1sq9_A 320 VKTKERITTL 329 (397)
T ss_dssp TTTTEEEEEE
T ss_pred cCCCceeEEE
Confidence 9887655443
No 79
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.1e-32 Score=288.98 Aligned_cols=246 Identities=13% Similarity=0.230 Sum_probs=207.3
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----------eEEEecCCC------------CceEEEEec--C
Q psy4876 333 EGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----------KCRTMDGHD------------VRVGALAWN--T 387 (609)
Q Consensus 333 ~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----------~~~~l~~h~------------~~V~~l~~~--~ 387 (609)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 367899999999999999999999999999998876 578899998 889999994 3
Q ss_pred --CEEEEEecCCeEEEEEcCCCCee--------------------------------------E-EEEccCCCCeEEEEE
Q psy4876 388 --YILSSGSRCGNIVHHDVRSRDHK--------------------------------------V-ALLQNHTQEVCGLKW 426 (609)
Q Consensus 388 --~~L~sgs~dg~I~iwd~~~~~~~--------------------------------------~-~~~~~h~~~V~~l~~ 426 (609)
..|++++.||.|++||+...... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 68999999999999999763211 1 123689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-------eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-------SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
+|++++|++| .|+.|++||++... ..+. .+.+|...|.+++|+|++..++++|+ .|+.|++||++
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~ 257 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITD-----RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR 257 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEE-----EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCC-----ceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence 9999999998 79999999998431 2333 36689999999999999867888874 89999999999
Q ss_pred CCce----eEEEcCCC-------------CeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEEeCCCCC-----
Q psy4876 500 SGAC----LDSIDTKS-------------QVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAELHGHSAR----- 556 (609)
Q Consensus 500 t~~~----~~~~~~~~-------------~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~l~~h~~~----- 556 (609)
+++. +..+..+. .|.+++|+|++++|++++ . +.|+|||+.. ++.+..+.+|...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLC 334 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee--C-CeEEEEeCCCCccccceeecccccccccc
Confidence 9887 67777654 799999999999999843 5 9999999997 8888888888642
Q ss_pred ----------EEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 557 ----------VLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 557 ----------V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+..++|+|++++|++|+.||.|+|||+.++...
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 334999999999999999999999999987653
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.3e-30 Score=274.62 Aligned_cols=250 Identities=17% Similarity=0.259 Sum_probs=212.4
Q ss_pred eeeeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEec---CCEEEEEecCCeEE
Q psy4876 328 HLMDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAWN---TYILSSGSRCGNIV 400 (609)
Q Consensus 328 ~l~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~~---~~~L~sgs~dg~I~ 400 (609)
....+. |...|++++|+|++ ++||+|+.||.|+|||+.+++....+. +|...|.+++|+ +.+|++++.||.|+
T Consensus 65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~ 144 (383)
T 3ei3_B 65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT 144 (383)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence 344555 89999999999999 999999999999999999888777775 699999999995 47999999999999
Q ss_pred EEEcCCCCeeEEEEcc---CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 401 HHDVRSRDHKVALLQN---HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
+||+... .+..+.. |...|.+++|+|++++|++|+.|+.|++||++ + .++..+..|...|.+++|+|+
T Consensus 145 iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~------~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 145 LRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G------HEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EEETTSC--EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S------CEEEEEECSSSCEEEEEECSS
T ss_pred EEECCCC--ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C------CEEEEeccCCCcEEEEEECCC
Confidence 9999963 4555544 44889999999999999999999999999994 4 578888999999999999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCC----CceeEEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSS----GACLDSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t----~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
+..++++|+ .|+.|++||+++ +.++..+.+...|.+++|+| ++.+|+++ ..|+.|+|||+.++..+..+.+
T Consensus 216 ~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 216 CDWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTT--DQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CTTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEE--ESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEE--cCCCcEEEEECCCCcccccccc
Confidence 987888874 899999999998 77888887778999999999 99999985 4899999999999887777765
Q ss_pred CC-----------------CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhh
Q psy4876 553 HS-----------------ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 553 h~-----------------~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
|. ..+..++|+|+|++ +++.|+.|+|||+.++......
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeee
Confidence 53 33445666666666 7778999999999887765443
No 81
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-30 Score=290.27 Aligned_cols=270 Identities=18% Similarity=0.295 Sum_probs=232.7
Q ss_pred ee-EEEEEecC--CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc------ceeeeeeec-CCCC
Q psy4876 270 YY-LNLIDWSH--FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR------AIDHLMDLE-GNEN 337 (609)
Q Consensus 270 ~~-v~~l~wsp--~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~-h~~~ 337 (609)
.. |.+++|+| ++ +++++.|+.|+|||+.+ + ....+..+. |...
T Consensus 64 ~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 64 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF-------------------------DKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE-------------------------EGGGTEEEEEEEEEEECCSSC
T ss_pred CceEEEEEECcCCCCCEEEEecCCCEEEEEeCCC-------------------------Ccccccccccccchhhccccc
Confidence 35 89999999 86 66688899999999975 3 344555666 8899
Q ss_pred eEEEEEccCCCEEEEEeCC----CeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCee
Q psy4876 338 VCSVAWIQEGYMLGVGTSL----GTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~d----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|.+++|+|++++|++++.+ +.|.+|| .++.+..+.+|...|.+++|+ +. .|++++.||.|++||+.+. ..
T Consensus 119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~~ 195 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-KF 195 (615)
T ss_dssp EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-EE
T ss_pred EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-ce
Confidence 9999999999999999988 6888888 567889999999999999995 33 8999999999999999886 57
Q ss_pred EEEEccCCC---CeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-c---CCcccEEEEEEcCCCCcEE
Q psy4876 411 VALLQNHTQ---EVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-S---RHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 ~~~~~~h~~---~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~---~h~~~V~~l~~sp~~~~ll 482 (609)
+..+.+|.. .|.+++|+|+ +++|++++.|+.|++||+.++ +.+..+ . .|...|.+++|+ ++ .++
T Consensus 196 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l 267 (615)
T 1pgu_A 196 SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG------EFLKYIEDDQEPVQGGIFALSWL-DS-QKF 267 (615)
T ss_dssp EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC------CEEEECCBTTBCCCSCEEEEEES-SS-SEE
T ss_pred eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC------CEeEEecccccccCCceEEEEEc-CC-CEE
Confidence 788899999 9999999999 999999999999999999988 677777 5 899999999999 66 456
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
++++ .|+.|++||+.+++++..+..+ ..+.++.|. ++.++++ +..++.|++||+.+++.+..+.+|...|
T Consensus 268 ~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~--~~~~g~i~~~d~~~~~~~~~~~~~~~~v 342 (615)
T 1pgu_A 268 ATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS--LSLDGTLNFYELGHDEVLKTISGHNKGI 342 (615)
T ss_dssp EEEE--TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE--EETTSCEEEEETTEEEEEEEECCCSSCE
T ss_pred EEEc--CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEE--EECCCCEEEEECCCCcEEEEEeCCCCCE
Confidence 6653 7999999999999999988766 578888886 8888888 4489999999999999999999999999
Q ss_pred EEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 558 LNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+++| |+ |++++.||.|++|++.
T Consensus 343 ~~~~~-~~---l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 343 TALTV-NP---LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEET-TT---TEEEETTSCEEETTTT
T ss_pred EEEEe-cC---cEEECCCCeEEEEEch
Confidence 99888 77 6777777777777764
No 82
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.7e-30 Score=271.25 Aligned_cols=244 Identities=14% Similarity=0.226 Sum_probs=212.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|.+.|++++|+|++++||+|+.||.|+|||+.+++ .+..+.+|...|.+++| ++.+|++++.||.|++||+.+...
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 78899999999999999999999999999999987 88999999999999999 478999999999999999987642
Q ss_pred -eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 410 -KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 410 -~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
....+..|...|.+++|+|++++|++|+.|+.|++||++.+.... ........|...|.+++|+|++. ++++++
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~-- 161 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW--VCKHIKKPIRSTVLSLDWHPNSV-LLAAGS-- 161 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE--EEEEECTTCCSCEEEEEECTTSS-EEEEEE--
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce--eeeeeecccCCCeeEEEEcCCCC-EEEEEc--
Confidence 233346799999999999999999999999999999998763100 01233366889999999999885 566653
Q ss_pred CCCeEEEEEC------------------CCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 489 ADRHIYFWNV------------------SSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 489 ~Dg~I~iwd~------------------~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
.|+.|++||+ ..++++..+..+ ..+.+++|+|++.+++++ ..|+.|++||+.+++.+..
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~ 239 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV--SHDSTVCLADADKKMAVAT 239 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE--ETTTEEEEEEGGGTTEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE--eCCCEEEEEECCCCceeEE
Confidence 8999999995 467888888654 589999999999999985 4899999999999999999
Q ss_pred EeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 550 LHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 550 l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+..|...|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 99999999999999999988877 999999999988
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.98 E-value=2.9e-30 Score=298.57 Aligned_cols=250 Identities=20% Similarity=0.308 Sum_probs=225.7
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCC
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~ 407 (609)
.+. |.+.|++++|+|+|.+||+|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.++
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~ 87 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 444 8999999999999999999999999999999999999999999999999999 5789999999999999999987
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
..+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++. .....+.+|...|.+++|+|.+..++++++
T Consensus 88 -~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~- 160 (814)
T 3mkq_A 88 -EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC- 160 (814)
T ss_dssp -CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-----EEEEEEECCSSCEEEEEEETTEEEEEEEEE-
T ss_pred -cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-----eEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-
Confidence 4778888999999999999999999999999999999998752 456778889999999999994445777764
Q ss_pred cCCCeEEEEECCCCceeEEEcCC--CCeEEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTK--SQVCALLWNS--DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
.|+.|++||+.++.....+..+ ..+..++|+| ++.++++ |+.++.|++||+.++..+..+.+|...|.+++|+
T Consensus 161 -~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~ 237 (814)
T 3mkq_A 161 -LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237 (814)
T ss_dssp -TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEEC
T ss_pred -CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 8999999999988877777644 6899999999 8999888 5589999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 564 PDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
|++.+|++++.||.|++||+.++....
T Consensus 238 ~~~~~l~~~~~dg~v~vwd~~~~~~~~ 264 (814)
T 3mkq_A 238 PTLPIIISGSEDGTLKIWNSSTYKVEK 264 (814)
T ss_dssp SSSSEEEEEETTSCEEEEETTTCSEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999999999999998765443
No 84
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=1.3e-29 Score=260.95 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=217.9
Q ss_pred cceeeeeeec-CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCC-----eeEEEecCCCCceEEEEe--cCCEEEEEe
Q psy4876 324 RAIDHLMDLE-GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAK-----KKCRTMDGHDVRVGALAW--NTYILSSGS 394 (609)
Q Consensus 324 ~~~~~l~~~~-h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~--~~~~L~sgs 394 (609)
.+.....++. |.+.|++|+|+|+ +++||+|+.||+|+|||+.+. .....+.+|...|.+++| ++.+|++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 4555556777 9999999999998 589999999999999998764 356788999999999999 579999999
Q ss_pred cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 395 RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
.||.|++|+.... ........+...+..+.+++++.+|++|+.|+.+++||+.... .......+|...+..++|
T Consensus 106 ~d~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~-----~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 106 WDGTLRLWDLTTG-TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC-----KYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp TTSEEEEEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-----EEEECSSSCSSCEEEEEE
T ss_pred ccccceEEeeccc-ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc-----eEEEEeccccCcccceEE
Confidence 9999999999986 4666777788899999999999999999999999999987652 344556789999999999
Q ss_pred cCCCCc-EEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 475 CPWSPN-VLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 475 sp~~~~-llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
++++.. +++++ +.|+.|++||+.+++++..+..+ ..|.+++|+|++++|+++ +.|+.|+|||+.+.+.+..+..
T Consensus 180 ~~~~~~~~~~s~--~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~--s~Dg~i~iwd~~~~~~~~~~~~ 255 (340)
T 4aow_A 180 SPNSSNPIIVSC--GWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASG--GKDGQAMLWDLNEGKHLYTLDG 255 (340)
T ss_dssp CSCSSSCEEEEE--ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE--ETTCEEEEEETTTTEEEEEEEC
T ss_pred ccCCCCcEEEEE--cCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEE--eCCCeEEEEEeccCceeeeecC
Confidence 998755 45555 38999999999999999888765 589999999999999984 4899999999999999988875
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+ ..|.+++|+|++.+ ++++.|+.|+|||+.+....
T Consensus 256 ~-~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 256 G-DIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp S-SCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEE
T ss_pred C-ceEEeeecCCCCce-eeccCCCEEEEEECCCCeEE
Confidence 5 68999999998865 55667999999999876543
No 85
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.9e-30 Score=277.18 Aligned_cols=304 Identities=14% Similarity=0.128 Sum_probs=229.2
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccc--------------ccccccc-------------
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQEL--------------TSKCIQD------------- 322 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~------------- 322 (609)
.+++++|++++ +++++.++.|++||+.++.....+..+....... ......+
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 36789999997 8888889999999998754211222222111000 0000000
Q ss_pred ---ccceeeeeeec-CCCCeEEEEEccCCCEE-EEEeCCCeEEEEeCC--CCeeEEEec--CCCCceEEEEe--cCCEEE
Q psy4876 323 ---NRAIDHLMDLE-GNENVCSVAWIQEGYML-GVGTSLGTVQLWDVS--AKKKCRTMD--GHDVRVGALAW--NTYILS 391 (609)
Q Consensus 323 ---~~~~~~l~~~~-h~~~V~~v~~spdg~~L-asgs~dg~I~iwd~~--~~~~~~~l~--~h~~~V~~l~~--~~~~L~ 391 (609)
........... |.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++| ++.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 00000011112 55689999999999996 889999999999999 888888886 57789999999 578999
Q ss_pred EEecCCeEEEEEcCCCCe---eEEEEccCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCCCCCCccceEe-ecC
Q psy4876 392 SGSRCGNIVHHDVRSRDH---KVALLQNHTQEVCGLKWSPD---GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS-LSR 464 (609)
Q Consensus 392 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spd---g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~ 464 (609)
+|+.+|.|++|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+.++ ..+.. +.+
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~ 239 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC------FIVDKWLFG 239 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT------TCEEEECCC
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC------ceeeeeecC
Confidence 999999999999987642 22366789999999999999 999999999999999999987 56666 568
Q ss_pred CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--------------------------CCCeEEEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--------------------------KSQVCALLW 518 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--------------------------~~~v~sl~~ 518 (609)
|...|.+++|+ ++ .+|++|+ .|+.|++||+.+++++..+.. ...+..++|
T Consensus 240 h~~~v~~~~~s-d~-~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 240 HKHFVSSICCG-KD-YLLLSAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CSSCEEEEEEC-ST-TEEEEEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCceEEEEEC-CC-CEEEEEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 99999999999 76 5666664 899999999999998888752 236899999
Q ss_pred cCCCCeEEEEEecCCCeEEEEEC--CCC---ceEEEEeCCCCCEEEEEEeCCCCEEEEEEC------CCCEEEEEcCCC
Q psy4876 519 NSDYKELVSAHGFAQNQLIIWKY--PSL---VKVAELHGHSARVLNLAMSPDETTVLSAGA------DETLRLWKIFEK 586 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg~I~Iwd~--~~~---~~~~~l~~h~~~V~~l~~spdg~~L~s~s~------Dg~I~iWdl~~~ 586 (609)
+|++++++++++ .++.|+||++ ..+ ..+..+.+| +.|.+++|+|++.++++++. +..|.||.+...
T Consensus 316 ~~~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 316 SKNLPFVAFFVE-ATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CSSSSEEEEEET-TCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred eCCCCEEEEEEC-CCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999998642 6999999999 555 677778888 88999999996544443333 556899987654
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.5e-32 Score=284.76 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=201.2
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD- 408 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~- 408 (609)
+.+.|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|...|.+++| ++.+|++++.||.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 5678999999999999999999999999999988 788889999999999999 46899999999999999998863
Q ss_pred -eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCCCCcEEEEEe
Q psy4876 409 -HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 409 -~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~llasgg 486 (609)
.....+..|...|.+++|+|++++|++|+.|+.|++||++.+.. ......+.. |...|.+++|+|++. ++++++
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~ 165 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLRSTILSLDWHPNNV-LLAAGC 165 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSS-EEEEEE
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccCCCeEEEEEcCCCC-EEEEEe
Confidence 24667788999999999999999999999999999999998731 124667777 999999999999884 666664
Q ss_pred ccCCCeEEEEECC------------------CCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--
Q psy4876 487 GTADRHIYFWNVS------------------SGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK-- 546 (609)
Q Consensus 487 Gs~Dg~I~iwd~~------------------t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~-- 546 (609)
.|+.|++||+. .++++..+.+...|.+++|+|++++|+++ +.|+.|+|||+.+++.
T Consensus 166 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~--~~d~~i~iwd~~~~~~~~ 241 (377)
T 3dwl_C 166 --ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYA--GHDSSVTIAYPSAPEQPP 241 (377)
T ss_dssp --SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEE--ETTTEEC-CEECSTTSCE
T ss_pred --CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEE--eCCCcEEEEECCCCCCcc
Confidence 89999999985 34455566455689999999999999985 4899999999999887
Q ss_pred --EEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 547 --VAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 547 --~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+..+.+|...|.+++|+|+|++|++++.|+.+ +|+...
T Consensus 242 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 242 RALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred eeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 77889999999999999999999988766555 776653
No 87
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-29 Score=260.94 Aligned_cols=259 Identities=18% Similarity=0.263 Sum_probs=223.5
Q ss_pred cceeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 324 RAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 324 ~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
|.......+. |.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++| ++.+|++++.||.|+
T Consensus 20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~ 99 (369)
T 3zwl_B 20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99 (369)
T ss_dssp CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 5555666666 9999999999999999999999999999999999999999999999999999 478999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCC-----ccceEeecCCcc--c
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFS-----TQPIHSLSRHQA--A 468 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~-----~~~~~~~~~h~~--~ 468 (609)
+||+.++. .+..+. |...|.+++|+|++++|++++.+ +.|++||+........ ...+..+..|.. .
T Consensus 100 iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 100 LWDVSNGQ-CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EEETTTCC-EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EEECCCCc-EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 99999874 555565 88999999999999999999999 9999999987642111 124455556666 8
Q ss_pred EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 469 VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+.+++|+|++. ++++++ .|+.|++||+.+ +..+..+..+ ..|.+++|+|++.+|+++ ..|+.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGK-YIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS--SRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGC-EEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE--ETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCC-EEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe--cCCceEEEEECCCCce
Confidence 99999999886 555553 799999999998 7778777754 589999999999999985 4899999999999999
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECCC--------------CEEEEEcCCCccch
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGADE--------------TLRLWKIFEKVKSK 590 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg--------------~I~iWdl~~~~~~~ 590 (609)
+..+. +...+..++|+|++.++++++.++ .|++||+..+....
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 309 (369)
T 3zwl_B 253 LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG 309 (369)
T ss_dssp EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence 98887 778899999999999999999998 89999998876544
No 88
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=6.2e-31 Score=270.86 Aligned_cols=242 Identities=21% Similarity=0.394 Sum_probs=198.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|++++|+|++ +++++.|++|+|||+.+ +....+..+. |.+.|.+++|++
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~-------------------------~~~~~~~~l~gH~~~V~~v~~~~ 67 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN-------------------------GGQILIADLRGHEGPVWQVAWAH 67 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEET-------------------------TEEEEEEEEECCSSCEEEEEECC
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC-------------------------CCcEEEEEEcCCCccEEEEEeCC
Confidence 3468999999986 67788999999999987 5444556666 999999999986
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC--eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCe--eEEEEc
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK--KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDH--KVALLQ 415 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~--~~~~~~ 415 (609)
++++|++|+.|+.|+|||+.++ .....+.+|...|.+++|+ +.+|++|+.||.|++||++.... ....+.
T Consensus 68 ~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~ 147 (316)
T 3bg1_A 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINN 147 (316)
T ss_dssp GGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTT
T ss_pred CCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeec
Confidence 4899999999999999999887 4667788999999999994 56899999999999999987532 234567
Q ss_pred cCCCCeEEEEEccC-----------------CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC
Q psy4876 416 NHTQEVCGLKWSPD-----------------GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS 478 (609)
Q Consensus 416 ~h~~~V~~l~~spd-----------------g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~ 478 (609)
+|...|.+++|+|+ +.+|++|+.|+.|++||++... ...++..+.+|...|.+++|+|++
T Consensus 148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp SSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCS
T ss_pred cccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC---ccceeeecccCCCceEEEEecCCC
Confidence 89999999999997 4789999999999999997541 113567788999999999999986
Q ss_pred ---CcEEEEEeccCCCeEEEEECCCC---c-eeEEE-cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 479 ---PNVLASGGGTADRHIYFWNVSSG---A-CLDSI-DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 479 ---~~llasggGs~Dg~I~iwd~~t~---~-~~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
..+|++++ .|++|++||+.+. . ....+ .+...|.+++|+|++++|++++ .|+.|+||+..
T Consensus 225 ~~~~~~las~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~--~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 GLPTSTIASCS--QDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSG--GDNKVTLWKES 292 (316)
T ss_dssp SCSCCEEEEEE--TTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEE--SSSCEEEEEEC
T ss_pred CCCCceEEEEc--CCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEc--CCCeEEEEEEC
Confidence 35788874 8999999999863 1 11222 2456899999999999999854 89999999965
No 89
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.9e-31 Score=293.58 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=187.9
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee----EEEecCCCCceEEEEecC--------CEEEEEecCCeEEEEEcCCCCe-----
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK----CRTMDGHDVRVGALAWNT--------YILSSGSRCGNIVHHDVRSRDH----- 409 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~~~--------~~L~sgs~dg~I~iwd~~~~~~----- 409 (609)
++.|++++.|++|+|||+.+++. ...+.+|.+.|.+++|++ .+|++++.||+|++||+.....
T Consensus 173 ~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~ 252 (524)
T 2j04_B 173 LEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF 252 (524)
T ss_dssp ---------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE
T ss_pred hhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc
Confidence 33444466789999999987654 244667889999999963 5999999999999999976531
Q ss_pred -----eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE--EEcCCCCcEE
Q psy4876 410 -----KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI--AWCPWSPNVL 482 (609)
Q Consensus 410 -----~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l--~~sp~~~~ll 482 (609)
....+.+|...|.+++|++++ .|++|+.||+|++||++++. .+...+.+|...|.+| +|+|++..+|
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----~~~~~~~~H~~~V~sv~~~~s~~g~~~l 326 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----VPSFYDQVHDSYILSVSTAYSDFEDTVV 326 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS-----SCSEEEECSSSCEEEEEEECCTTSCCEE
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC-----CceEEeecccccEEEEEEEcCCCCCeEE
Confidence 134678899999999999864 89999999999999998762 3556688999999999 5677665788
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
++|+ .|++|+|||+++++++..+..+ ..|.+++|+|+++.+++ +..|++|+|||+.++.++..+.+|.+.|++
T Consensus 327 aS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~s 402 (524)
T 2j04_B 327 STVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITA 402 (524)
T ss_dssp EEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEE
T ss_pred EEec--cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEE
Confidence 8874 8999999999988877666543 24789999999999887 447999999999999988889999999999
Q ss_pred EEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 560 LAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
|+|+|+|++|++|+.|++|++||+...
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEeCCCCCeEEEEECCCEEEEEechHh
Confidence 999999999999999999999998664
No 90
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=6e-30 Score=310.02 Aligned_cols=281 Identities=17% Similarity=0.261 Sum_probs=240.0
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC-
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE- 346 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd- 346 (609)
.|.+++|+|++ +++++.|+.|+|||+.+ +.. +..+. |...|.+++|+|+
T Consensus 659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-------------------------~~~--~~~~~~~~~~v~~~~~~~~~ 711 (1249)
T 3sfz_A 659 EVLCCAFSSDDSYIATCSADKKVKIWDSAT-------------------------GKL--VHTYDEHSEQVNCCHFTNKS 711 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTT-------------------------CCE--EEEEECCSSCEEEEEECSSS
T ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEECCC-------------------------Cce--EEEEcCCCCcEEEEEEecCC
Confidence 48899999996 66788899999999988 543 34444 8999999999994
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE------------
Q psy4876 347 -GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV------------ 411 (609)
Q Consensus 347 -g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~------------ 411 (609)
+.++++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++++.||.|++||+.++....
T Consensus 712 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~ 791 (1249)
T 3sfz_A 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791 (1249)
T ss_dssp SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccC
Confidence 578999999999999999999999999999999999999 57899999999999999987652110
Q ss_pred ------------------------------------------EEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 412 ------------------------------------------ALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 412 ------------------------------------------~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
....+|...|.+++|+|++.++++++.||.|++||+.+
T Consensus 792 ~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 792 DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDS 871 (1249)
T ss_dssp ----CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTT
T ss_pred CccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Confidence 11126788999999999999999999999999999998
Q ss_pred CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--------------------------
Q psy4876 450 GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC-------------------------- 503 (609)
Q Consensus 450 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~-------------------------- 503 (609)
+ ..+..+.+|...|.+++|+|++. .+++++ .|+.|++||+.++..
T Consensus 872 ~------~~~~~~~~h~~~v~~v~~spdg~-~l~s~s--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1249)
T 3sfz_A 872 R------LKVADCRGHLSWVHGVMFSPDGS-SFLTAS--DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDN 942 (1249)
T ss_dssp T------EEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEES
T ss_pred C------ceeeecCCCccceEEEEECCCCC-EEEEEe--CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecC
Confidence 8 78888999999999999999986 455553 799999999753110
Q ss_pred ---e---------EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 504 ---L---------DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 504 ---~---------~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
+ ........+.+++|+|+++++++ |..+|.|++|++.++..+..+.+|...|.+++|+|+|++|++
T Consensus 943 ~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp SSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEE
T ss_pred CcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEE
Confidence 0 01112357899999999999998 558999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEEcCCCccc
Q psy4876 572 AGADETLRLWKIFEKVKS 589 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~~~ 589 (609)
++.||.|++||+.++...
T Consensus 1021 ~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECSSSBEEEEETTTTEEE
T ss_pred EcCCCEEEEEECCCCceE
Confidence 999999999999887654
No 91
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.4e-29 Score=257.28 Aligned_cols=247 Identities=18% Similarity=0.272 Sum_probs=215.6
Q ss_pred eeeeeeec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEE
Q psy4876 326 IDHLMDLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHH 402 (609)
Q Consensus 326 ~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iw 402 (609)
.+.+..+. |.+.|++++| +++.+|++|+.||.|+|||+.+++....+..|...|.+++| ++.+|++++.||.|++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 45556666 9999999999 99999999999999999999999999999999999999999 57899999999999999
Q ss_pred EcCCCC--eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCc
Q psy4876 403 DVRSRD--HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPN 480 (609)
Q Consensus 403 d~~~~~--~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 480 (609)
++.... ..+..+.+|...|.+++| ++.+|++++.|+.|++|| .+ ..+..+..|...|.+++|+|....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~------~~~~~~~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG------SLVYNLQAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT------EEEEEEECCSSCEEEEEEEETTTT
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC------cEEEecccCCCceeEEEEccCCCC
Confidence 997653 456778899999999999 578999999999999999 33 677888899999999999994446
Q ss_pred EEEEEeccCCCeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 481 VLASGGGTADRHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 481 llasggGs~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
++++++ .|+.|++|| .++.+..+. +...+.+++|++++. +++ +..++.|++||+.+++.+..+.+|...|.
T Consensus 157 ~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~ 229 (313)
T 3odt_A 157 KFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVY 229 (313)
T ss_dssp EEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred EEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEE
Confidence 777764 899999999 455666665 456899999999998 666 45899999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccchh
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+++|+|++ .|++++.||.|++||+.++.....
T Consensus 230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~ 261 (313)
T 3odt_A 230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQV 261 (313)
T ss_dssp EEEECTTS-CEEEEETTSEEEEECTTTCCEEEE
T ss_pred EEEEecCC-CEEEEecCCEEEEEECCCCceeEE
Confidence 99999999 599999999999999988765443
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=4.8e-30 Score=264.77 Aligned_cols=240 Identities=13% Similarity=0.157 Sum_probs=207.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe---eEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEEc-CC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---KCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHDV-RS 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd~-~~ 406 (609)
|.+.|++++|+|++.+|++|+.||.|+|||+.+++ ....+.+|...|.+++| ++. +|++|+.||.|++||+ ..
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 89 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccC
Confidence 88999999999999999999999999999998776 34556689999999999 578 9999999999999999 77
Q ss_pred CCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---------CCCCCCccceEeecCCcccEEEEEEc
Q psy4876 407 RDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP---------GQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 407 ~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~---------~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
. ....+.+ |...|.+++|+| +.+|++++.|+.|++||+++ + +++..+. |...|.+++|+
T Consensus 90 ~--~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 90 P--SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN------LNSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp S--SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE------SCSSSSS-SCCCEEEEEEC
T ss_pred C--ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC------CeeeEEe-eCCceEEEEec
Confidence 5 3477788 999999999999 99999999999999999986 5 4455555 88999999999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCC-Ccee---EEEcCCCCeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCC------
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSS-GACL---DSIDTKSQVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSL------ 544 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t-~~~~---~~~~~~~~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~------ 544 (609)
|++ ++++ +.|+.|++||+++ +... ....+...+.+++|+| ++.+++++ ..+|.|+||++...
T Consensus 160 ~~~---l~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~--~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 160 SSR---LIVG--MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACS--SIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp SSE---EEEE--ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEE--ETTSEEEEEECCTTCCSTTC
T ss_pred CCc---EEEE--eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEE--ecCCcEEEEEEcCCCccccc
Confidence 976 5555 3799999999998 5532 2223456899999999 99999984 48999999999887
Q ss_pred ceEEEEeCCCC---------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 545 VKVAELHGHSA---------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 545 ~~~~~l~~h~~---------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+..+.+|.. .|.+++|+|++++|++++.||.|++||+.++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 77888888865 99999999999999999999999999998776543
No 93
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.97 E-value=1.9e-29 Score=287.73 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=213.4
Q ss_pred eeec-CCCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCC-----eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEE
Q psy4876 330 MDLE-GNENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAK-----KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIV 400 (609)
Q Consensus 330 ~~~~-h~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~-----~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~ 400 (609)
..+. |.+.|++|+|++++ ++|++|+.||.|+|||+.+. .....+.+|...|.+++| ++.+|++|+.||.|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3455 99999999999875 89999999999999999753 456788999999999999 578999999999999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCC-
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSP- 479 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~- 479 (609)
+||+.++ ..+..+.+|...|.+++|+|++++|++|+.|++|++||+..... ........+|...|.+++|+|++.
T Consensus 456 vwd~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~ 531 (694)
T 3dm0_A 456 LWDLAAG-VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVSCVRFSPNTLQ 531 (694)
T ss_dssp EEETTTT-EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEEEEEECSCSSS
T ss_pred EEECCCC-cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEEEEEEeCCCCc
Confidence 9999987 57788899999999999999999999999999999999865410 001112246888999999999874
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL 558 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~ 558 (609)
.++++|+ .|+.|++||++++++...+..| ..|.+++|+|++++|+++ +.|+.|+|||+.+++.+..+.. ...|.
T Consensus 532 ~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg--~~Dg~i~iwd~~~~~~~~~~~~-~~~v~ 606 (694)
T 3dm0_A 532 PTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG--GKDGVVLLWDLAEGKKLYSLEA-NSVIH 606 (694)
T ss_dssp CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE--ETTSBCEEEETTTTEEEECCBC-SSCEE
T ss_pred ceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCCceEEEecC-CCcEE
Confidence 4677764 8999999999999999888765 589999999999999984 4899999999999998887754 56799
Q ss_pred EEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 559 NLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+++|+|++.+|++++ |+.|+|||+.++....
T Consensus 607 ~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 607 ALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 999999998887765 5669999998876543
No 94
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=277.72 Aligned_cols=249 Identities=17% Similarity=0.226 Sum_probs=204.6
Q ss_pred eeeee-c-CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCC---Ce---eEEEecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 328 HLMDL-E-GNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSA---KK---KCRTMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 328 ~l~~~-~-h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~---~~---~~~~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
.+..+ . |.+.|++++|+| ++.+||+|+.||.|+|||+.+ +. ....+ .|...|.+++| ++.+|++|+.|
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d 132 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD 132 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence 44455 4 889999999999 999999999999999999876 33 23333 49999999999 47899999999
Q ss_pred CeEEEEEcC---CCCeeEEEEc----------c--CCCCeEEEE--EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 397 GNIVHHDVR---SRDHKVALLQ----------N--HTQEVCGLK--WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 397 g~I~iwd~~---~~~~~~~~~~----------~--h~~~V~~l~--~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
|.|++||+. .+. ...... . +...+.++. +++++.+|++|+.|+.|++||++++ +.+
T Consensus 133 g~i~vwd~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~ 205 (437)
T 3gre_A 133 GQIIVLKVNHYQQES-EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERL 205 (437)
T ss_dssp SEEEEEEEEEEEETT-EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEE
T ss_pred CEEEEEEeccccCCc-eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eee
Confidence 999999995 332 222222 1 556677777 5688999999999999999999988 778
Q ss_pred EeecC--CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc--CCCCeEEEEEcC----CCCeEEEEEec
Q psy4876 460 HSLSR--HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID--TKSQVCALLWNS----DYKELVSAHGF 531 (609)
Q Consensus 460 ~~~~~--h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~----~g~~l~~~sG~ 531 (609)
..+.. |...|.+++|+|++ .++++|+ .|+.|++||+++++++..+. ++..|.+++|+| ++.++++ |.
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~-~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s--~~ 280 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEEC-CVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG--GS 280 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTS-CEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE--ES
T ss_pred EEEccCCCCCceEEEEECCCC-CEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE--Ec
Confidence 88887 88999999999997 4666663 89999999999999999875 455899997765 5667777 66
Q ss_pred CCCeEEEEECCCCceEEEEeCC--------------------------CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 532 AQNQLIIWKYPSLVKVAELHGH--------------------------SARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 532 ~dg~I~Iwd~~~~~~~~~l~~h--------------------------~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.|+.|+|||+.+++.+..+.+| ...|++++|+ ++.+|++|+.|+.|++||+.+
T Consensus 281 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 281 SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC
T ss_pred CCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC
Confidence 8999999999999988888754 4558889999 789999999999999999998
Q ss_pred Cccch
Q psy4876 586 KVKSK 590 (609)
Q Consensus 586 ~~~~~ 590 (609)
++...
T Consensus 360 ~~~~~ 364 (437)
T 3gre_A 360 LSSSK 364 (437)
T ss_dssp GGGCE
T ss_pred cccce
Confidence 77554
No 95
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-30 Score=299.50 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=204.4
Q ss_pred eeEEEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee---------------
Q psy4876 270 YYLNLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD--------------- 331 (609)
Q Consensus 270 ~~v~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------- 331 (609)
..|.+|+|+|+ + +++++.|+.| |||+.+ +.......
T Consensus 152 ~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-------------------------~~~~~~~~~~~~~g~~~~~~~~~ 205 (902)
T 2oaj_A 152 SPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-------------------------NEIKQSFIYELPPFAPGGDFSEK 205 (902)
T ss_dssp CCCCEEEEETTEEEEEEEECSSCEE-EEETTT-------------------------TEEEEEECCCBCTTCCCSTTCCC
T ss_pred CCeEEEEEccCCCCEEEEEeCCCcE-EEECCC-------------------------CceEEEEecccCCcCCCcccccc
Confidence 35889999996 2 6667788999 999987 22211111
Q ss_pred -ec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE--ec---C-------------CCCceEEEEe----cC
Q psy4876 332 -LE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT--MD---G-------------HDVRVGALAW----NT 387 (609)
Q Consensus 332 -~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~--l~---~-------------h~~~V~~l~~----~~ 387 (609)
.. |...|.+++|+|+|.+||+|+.||.|+|||+.+++.+.. +. . |...|.+++| ++
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p 285 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNP 285 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCC
Confidence 11 457899999999999999999999999999999887653 21 2 3457888888 22
Q ss_pred ---CEEEEEecC-----CeEEEEE--------------------------------------------------------
Q psy4876 388 ---YILSSGSRC-----GNIVHHD-------------------------------------------------------- 403 (609)
Q Consensus 388 ---~~L~sgs~d-----g~I~iwd-------------------------------------------------------- 403 (609)
.+|++|+.+ ..|.+|+
T Consensus 286 d~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~ 365 (902)
T 2oaj_A 286 EYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPG 365 (902)
T ss_dssp TEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCS
T ss_pred CCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCce
Confidence 456666443 1444444
Q ss_pred ---------------cCCCCeeEE----------------------------------------EEccCCCCeEEEEEcc
Q psy4876 404 ---------------VRSRDHKVA----------------------------------------LLQNHTQEVCGLKWSP 428 (609)
Q Consensus 404 ---------------~~~~~~~~~----------------------------------------~~~~h~~~V~~l~~sp 428 (609)
+.++..... .+.+|...+.+++|+|
T Consensus 366 ~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp 445 (902)
T 2oaj_A 366 LILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE 445 (902)
T ss_dssp EEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS
T ss_pred eEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc
Confidence 322210000 0122333344455678
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEe--ec-----CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 429 DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS--LS-----RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 429 dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~-----~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++++||+|+.|++|++||+..+.... ..... +. +|...|.+++|+|++. +||+|+ .|++|+|||+.++
T Consensus 446 dg~~laSgs~DgtVrlWd~~~g~~~~--~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs--~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 446 YGTAFITGHSNGSVRIYDASHGDIQD--NASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSI--ETGDVVLFKYEVN 520 (902)
T ss_dssp EEEEEEEEETTSEEEEEESSCCTTTT--TBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEE--TTSCEEEEEEEEC
T ss_pred cCcEEEEecCCCcEEEEECCCccccC--CceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEe--cCcEEEEEEecCc
Confidence 99999999999999999998873210 01111 12 7889999999999985 677764 8999999999866
Q ss_pred c---------------------------------------------eeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCe
Q psy4876 502 A---------------------------------------------CLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQ 535 (609)
Q Consensus 502 ~---------------------------------------------~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~ 535 (609)
+ ++..+. +...|++++|+|+| +|++ |+.|++
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~t 597 (902)
T 2oaj_A 521 QFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGS 597 (902)
T ss_dssp CC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSE
T ss_pred cccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCc
Confidence 2 355665 44699999999999 8888 558999
Q ss_pred EEEEECCCCceEE--E---Ee-CCCCCEEEEEEe-----CCC---CEEEEEECCCCEEEEEc
Q psy4876 536 LIIWKYPSLVKVA--E---LH-GHSARVLNLAMS-----PDE---TTVLSAGADETLRLWKI 583 (609)
Q Consensus 536 I~Iwd~~~~~~~~--~---l~-~h~~~V~~l~~s-----pdg---~~L~s~s~Dg~I~iWdl 583 (609)
|+|||+.+...+. . +. +|.+.|++|+|+ ||| .+|++|+.|++|++||+
T Consensus 598 v~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 598 LMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred EEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 9999998877654 2 32 899999999999 886 89999999999999999
No 96
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=265.54 Aligned_cols=246 Identities=16% Similarity=0.280 Sum_probs=206.1
Q ss_pred CCCCeEEEEEccCCCEE-EEEeC---CCeEEEEeCCCCeeEEEe-cCCCCceEEEEec-----CCEEEEEecCCeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYML-GVGTS---LGTVQLWDVSAKKKCRTM-DGHDVRVGALAWN-----TYILSSGSRCGNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~L-asgs~---dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd 403 (609)
|...|.+++|+|++..+ ++|+. ||.|+|||+.+++..... .+|...|.+++|+ +.+|++|+.||.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 99999999999999655 55655 899999999988765443 3799999999993 48999999999999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEE------ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc----cEEEEE
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKW------SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA----AVKAIA 473 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~------spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~----~V~~l~ 473 (609)
+.+....+..+.+|...|.+++| +|++++|++|+.||.|++||+..+. .++..+..|.+ .|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~v~~~~ 171 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD-----DPVANMEPVQGENKRDCWTVA 171 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS-----SCSEEECCCTTSCCCCEEEEE
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC-----CcceeccccCCCCCCceEEEE
Confidence 99875478889999999999955 6899999999999999999999873 25666655544 789998
Q ss_pred ----EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcC---CCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 474 ----WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNS---DYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 474 ----~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~---~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
|+|++. ++++++ .|+.|++||+++++......+...+.+++|+| ++.+++++ ..|+.|++||+.++..
T Consensus 172 ~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~ 246 (357)
T 3i2n_A 172 FGNAYNQEER-VVCAGY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVAT--SLEGKFHVFDMRTQHP 246 (357)
T ss_dssp EECCCC-CCC-EEEEEE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEE--ESTTEEEEEEEEEEET
T ss_pred EEeccCCCCC-EEEEEc--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEE--CCCCeEEEEeCcCCCc
Confidence 677774 566653 79999999999999888877888999999999 89999884 4899999999987655
Q ss_pred EEEE-----eCCCCCEEEEEEeCCCC-EEEEEECCCCEEEEEcCCCccc
Q psy4876 547 VAEL-----HGHSARVLNLAMSPDET-TVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 547 ~~~l-----~~h~~~V~~l~~spdg~-~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
+..+ .+|...|.+++|+|++. +|++++.||.|++||+......
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 4444 48999999999999998 8999999999999999876543
No 97
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.7e-29 Score=265.06 Aligned_cols=277 Identities=13% Similarity=0.078 Sum_probs=230.6
Q ss_pred EEEEEecCCC-eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee---ec-CCCCeEEEEEcc
Q psy4876 272 LNLIDWSHFN-VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD---LE-GNENVCSVAWIQ 345 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~-h~~~V~~v~~sp 345 (609)
+.+++|+|++ +++ ++.++.|++||+.+ +....... +. |...|.+++|++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~v~~~~~~~ 179 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINS-------------------------GQTVRLSPPEKYKKKLGFVETISIPE 179 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTT-------------------------CCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCC-------------------------CeEeeecCcccccccCCceeEEEEcC
Confidence 4579999976 444 34467899999988 54443222 22 788999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
++.++++++.|+.|++||+.+++.+..+..|...+.+++|+ +..+ ++++.|+.|++||++++ ..+..+.. ...+.
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~-~~~~~ 257 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK-LEIRKTDK-IGLPR 257 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEECCC-CSEEE
T ss_pred CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC-cEEEEecC-CCCce
Confidence 99999999999999999999999999999999999999994 5666 55558999999999986 45555554 45699
Q ss_pred EEEEccCCCEEEEEe--------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 423 GLKWSPDGRYLASGG--------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 423 ~l~~spdg~~lasgs--------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+++|+|+|++|++++ .|+.|++||+.++ +.+..+ .|...+.+++|+|++..+++++ +.|+.|+
T Consensus 258 ~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~~~~~~~~~~g~~l~~~~--~~~~~v~ 328 (433)
T 3bws_A 258 GLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE------KLIDTI-GPPGNKRHIVSGNTENKIYVSD--MCCSKIE 328 (433)
T ss_dssp EEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT------EEEEEE-EEEECEEEEEECSSTTEEEEEE--TTTTEEE
T ss_pred EEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC------cEEeec-cCCCCcceEEECCCCCEEEEEe--cCCCEEE
Confidence 999999999999988 5889999999977 444443 4566889999999998888876 4799999
Q ss_pred EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecC-------------CCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 495 FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFA-------------QNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~-------------dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
+||+.+++.+..+.....+.+++|+|++++++++.... ||.|++||..+++.+..+.. ...+.+++
T Consensus 329 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~ 407 (433)
T 3bws_A 329 VYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLD 407 (433)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred EEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEE
Confidence 99999999999998888999999999999998865322 57999999999999988876 45799999
Q ss_pred EeCCCCEEEEEEC-CCCEEEEEcCC
Q psy4876 562 MSPDETTVLSAGA-DETLRLWKIFE 585 (609)
Q Consensus 562 ~spdg~~L~s~s~-Dg~I~iWdl~~ 585 (609)
|+|+|++|++++. |+.|++|++.+
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EcCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999998875 99999999864
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.4e-29 Score=261.39 Aligned_cols=246 Identities=19% Similarity=0.332 Sum_probs=206.0
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
...|.+++|+|++ +++++.|+.|+|||+.. .....+..+. |...|++++|++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~-------------------------~~~~~~~~~~~h~~~v~~~~~~~ 65 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAH 65 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEET-------------------------TEEEEEEEECCCSSCEEEEEECC
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCC-------------------------CcceeeeEecCCCCcEEEEEeCC
Confidence 3458999999986 66677899999999975 4555666666 999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCC-eeEEEEcc
Q psy4876 346 E--GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRD-HKVALLQN 416 (609)
Q Consensus 346 d--g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~ 416 (609)
+ +++|++|+.||.|+|||+.+++ .+..+..|...|.+++|+ +.+|++++.||.|++||++... .....+..
T Consensus 66 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 66 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC
T ss_pred CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC
Confidence 7 8999999999999999999987 788888999999999994 6799999999999999998763 24456778
Q ss_pred CCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcE
Q psy4876 417 HTQEVCGLKWSP-------------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNV 481 (609)
Q Consensus 417 h~~~V~~l~~sp-------------dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l 481 (609)
|...|.+++|+| ++.+|++|+.|+.|++||++.+... ...+..+.+|...|.+++|+|++ ..+
T Consensus 146 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 146 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCe
Confidence 999999999999 6999999999999999999876321 13556788899999999999994 467
Q ss_pred EEEEeccCCCeEEEEECCCCce---eEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 482 LASGGGTADRHIYFWNVSSGAC---LDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~---~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
+++++ .|+.|++||+.++.. ...+. +...+.+++|+|++++|++++ .||.|+||++....
T Consensus 224 l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 224 LASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEE--TTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE--SSSSEEEEEEEETT
T ss_pred EEEEe--CCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec--CCCcEEEEeCCCCC
Confidence 77764 899999999998742 22222 445899999999999999854 79999999987543
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.7e-30 Score=265.97 Aligned_cols=242 Identities=16% Similarity=0.267 Sum_probs=207.4
Q ss_pred CCCCeEEEEEccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEec------CCEEEEEecCCe
Q psy4876 334 GNENVCSVAWIQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAWN------TYILSSGSRCGN 398 (609)
Q Consensus 334 h~~~V~~v~~spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~~------~~~L~sgs~dg~ 398 (609)
|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|.+++|+ +.+|++|+.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 8999999999984 45677777778999999998877766653 56789999994 459999999999
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee---cCCcccEEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL---SRHQAAVKAIAW 474 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~l~~ 474 (609)
|++||+.++ ..+..+.+|...|.+++|+| ++.+|++|+.||.|++||++++ +.+..+ ..|...|.+++|
T Consensus 97 i~v~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 97 IRIINPITM-QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EEEECTTTC-CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT------EEEEEECSTTSCSSCEEEEEE
T ss_pred EEEEEchhc-eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC------eEEEEecccccccCceeEEEE
Confidence 999999987 46778889999999999999 9999999999999999999987 666666 689999999999
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-----------------------------CCCCeEEEEEcCCCCeE
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-----------------------------TKSQVCALLWNSDYKEL 525 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-----------------------------~~~~v~sl~~s~~g~~l 525 (609)
+|++. ++++++ .|+.|++||+++++.+..+. +...|.+++|+ +.++
T Consensus 170 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 244 (366)
T 3k26_A 170 DLLGE-KIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLI 244 (366)
T ss_dssp CTTSS-EEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEE
T ss_pred CCCCC-EEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEE
Confidence 99885 555553 79999999999876554333 45689999999 6777
Q ss_pred EEEEecCCCeEEEEECCCCce--------------EEEEeCCCCCEEEEEEeCC--CCEEEEEECCCCEEEEEcCCCccc
Q psy4876 526 VSAHGFAQNQLIIWKYPSLVK--------------VAELHGHSARVLNLAMSPD--ETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 526 ~~~sG~~dg~I~Iwd~~~~~~--------------~~~l~~h~~~V~~l~~spd--g~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
++ ++.|+.|++||+.++.. +..+.+|...|.+++|+|+ +.+|++++.||.|++||+..+...
T Consensus 245 ~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 245 LS--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp EE--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred EE--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 77 55899999999987644 7788899999999999999 999999999999999999987644
No 100
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=5.3e-30 Score=275.79 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=202.0
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCeEEEEeCCCCee--EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQE-GYMLGVGTSLGTVQLWDVSAKKK--CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spd-g~~Lasgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|...|++|+|+|. +++||+|+.||.|+|||+.+++. ...+.+|...|.+|+|+ +.+|++|+.||+|++||++..
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~ 197 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN 197 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence 7889999999994 68999999999999999987654 34456899999999994 689999999999999999875
Q ss_pred CeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 408 DHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 408 ~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
. ...... .+...+++++|+|++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++..++++|
T Consensus 198 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~~~s~ 269 (435)
T 4e54_B 198 I-LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-------KELWNLRMHKKKVTHVALNPCCDWFLATA 269 (435)
T ss_dssp E-EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-------CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred c-eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-------ceeEEEecccceEEeeeecCCCceEEEEe
Confidence 2 222222 2345678999999999999999999999999874 45677889999999999999998899887
Q ss_pred eccCCCeEEEEECCCCceeEEE----cCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC------
Q psy4876 486 GGTADRHIYFWNVSSGACLDSI----DTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA------ 555 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~----~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~------ 555 (609)
+ .|+.|++||+++++....+ .+...|.+++|+|++.+|+++ +.|+.|+|||+.++.....+..|..
T Consensus 270 s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~--~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 345 (435)
T 4e54_B 270 S--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT--DQKSEIRVYSASQWDCPLGLIPHPHRHFQHL 345 (435)
T ss_dssp E--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE--ESSSCEEEEESSSSSSEEEECCCCCCCCSSS
T ss_pred c--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE--cCCCEEEEEECCCCccceEEecccccccccc
Confidence 5 8999999999987654433 345689999999999999984 4899999999999998888876653
Q ss_pred CEEEEEEeCCCCEEEEEEC------------CCCEEEEEcCCCccchh
Q psy4876 556 RVLNLAMSPDETTVLSAGA------------DETLRLWKIFEKVKSKK 591 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~------------Dg~I~iWdl~~~~~~~k 591 (609)
.+..+.|+|++.++++++. ++.|++||+.++.....
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 2445678888877777653 35799999988775543
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=9.3e-29 Score=253.67 Aligned_cols=250 Identities=18% Similarity=0.294 Sum_probs=205.4
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|++|+|+|++ +++++.||.|+|||+.+.. .....+..+. |...|++++|+|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-----------------------~~~~~~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-----------------------SNWELSDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-----------------------CCEEEEEEEECCSSCEEEEEECC
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-----------------------CcceecceeccCCCcEEEEEEcC
Confidence 3458999999986 6678889999999998621 2234455555 899999999999
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC---------eeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK---------KKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
++.+|++|+.||.|+|||+.++ +.+..+..|...|.+++|+ +.+|++++.||.|++||+++...
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~- 146 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD- 146 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC-
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH-
Confidence 6999999999999999999887 6688899999999999994 77999999999999999987642
Q ss_pred EEEE-------------ccCCCCeEEEEEccC---CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 411 VALL-------------QNHTQEVCGLKWSPD---GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 411 ~~~~-------------~~h~~~V~~l~~spd---g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
+..+ ..|...+.+++|+|+ +.+|++++.|+.+.+|+...+.. ..+..+.+|...|.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----HVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE----EEEEECCCCCSCEEEEEE
T ss_pred hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce----eeeeecCCCCcceeEEEE
Confidence 1111 257889999999997 99999999999998888776621 347788899999999999
Q ss_pred cCCCC---cEEEEEeccCCCeEEEEECCCC----------------------------------------------ceeE
Q psy4876 475 CPWSP---NVLASGGGTADRHIYFWNVSSG----------------------------------------------ACLD 505 (609)
Q Consensus 475 sp~~~---~llasggGs~Dg~I~iwd~~t~----------------------------------------------~~~~ 505 (609)
+|++. .++++|+ .|+.|++||++++ +.+.
T Consensus 223 ~p~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 223 APSIGRWYQLIATGC--KDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp CCCSSCSSEEEEEEE--TTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred CCCCCCcceEEEEEc--CCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 99974 5777774 8999999999875 4455
Q ss_pred EEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 506 SIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 506 ~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
.+..+ ..|.+++|+|++++|+++ +.||.|+||++.++..+..+
T Consensus 301 ~~~~h~~~v~~~~~s~~~~~l~s~--~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGTILSSA--GDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EECTTSSCEEEEEECSSSCCEEEE--ETTSCEEEEEECTTSCEEEE
T ss_pred EEecccccEEEEEEcCCCCEEEEe--cCCCcEEEEecCcCcchhhe
Confidence 55544 589999999999999985 48999999999887655443
No 102
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-28 Score=258.48 Aligned_cols=281 Identities=13% Similarity=0.082 Sum_probs=214.7
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
..|++++|+|++ +++++.+..++||++.+ +.... ... ...+..++|.++++
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~-------------------------~~~~~--~~~-~~~~~~~~~~~~~~ 71 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHP-------------------------VAHIM--SQE-MRHLSKVRMLHRTN 71 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSEEEEEEETT-------------------------EEEEE--EEE-CSCCCEEEECTTSS
T ss_pred CceEEEEECCCCCEEEEEcCCEEEEEecCC-------------------------cceee--eee-cCCeEEEEEcCCCC
Confidence 458899999997 78888888899999876 33322 222 23578899999888
Q ss_pred EE-EEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 349 ML-GVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 349 ~L-asgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.+ ++|+.|+.|+|||+.+++.+..+. |...|.++.|+++.++++. ++.|++||+.+....+..+.. ....++++
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s 146 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFS 146 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEE
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEE
Confidence 77 457778999999999999999887 6779999999988777764 789999999886223333332 34455667
Q ss_pred cCCCEEEE--EeCCCcEEEEeCCCCCCC---------CCccc-eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe-EE
Q psy4876 428 PDGRYLAS--GGNDNLLNIWSGVPGQHT---------FSTQP-IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH-IY 494 (609)
Q Consensus 428 pdg~~las--gs~Dg~I~iwd~~~~~~~---------~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~-I~ 494 (609)
+ .++++ |+.||.|++||+.++... ....+ +..+.+|...|.+++|+|++ .+|++|+ .|++ |+
T Consensus 147 ~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s--~d~~~v~ 221 (355)
T 3vu4_A 147 N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVATCS--QDGTIIR 221 (355)
T ss_dssp T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEEEE--TTCSEEE
T ss_pred c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEEEe--CCCCEEE
Confidence 6 56666 578999999999976310 00012 67889999999999999988 5677764 8998 99
Q ss_pred EEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEE-------------------
Q psy4876 495 FWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK--VAEL------------------- 550 (609)
Q Consensus 495 iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~--~~~l------------------- 550 (609)
+||+++++++..+. +...|.+++|+|++++|+++ +.|+.|+|||+..... ...+
T Consensus 222 iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~--s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T 3vu4_A 222 VFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV--SDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299 (355)
T ss_dssp EEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE--ETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred EEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE--ECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence 99999999999997 45689999999999999995 4899999999975431 1111
Q ss_pred --eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 551 --HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 --~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
..+......++|++||++|++++.||.+++|++..++..+
T Consensus 300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETTTT
T ss_pred eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCCCc
Confidence 0112234679999999999999999999999998766543
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.5e-28 Score=264.20 Aligned_cols=235 Identities=20% Similarity=0.382 Sum_probs=208.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++.+|++|+.||.|++||+.++ ..+..
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~ 208 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTG-EMLNT 208 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSC-CEEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCC-cEEEE
Confidence 6678998887 78999999999999999999999999999999999999999999999999999999999987 47888
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
+.+|...|.+++|+ +.+|++|+.||.|++||+.++... .....+.+|...|.+++| ++ .++++|+ .|+.|
T Consensus 209 ~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~---~~~~~~~~~~~~v~~~~~--~~-~~l~s~~--~dg~i 278 (435)
T 1p22_A 209 LIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI---TLRRVLVGHRAAVNVVDF--DD-KYIVSAS--GDRTI 278 (435)
T ss_dssp ECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC---EEEEEECCCSSCEEEEEE--ET-TEEEEEE--TTSEE
T ss_pred EcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc---eeeeEecCCCCcEEEEEe--CC-CEEEEEe--CCCeE
Confidence 99999999999997 459999999999999999887321 223677889999999999 34 4666664 79999
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~ 572 (609)
++||+.+++++..+..+ ..+.++.| ++.++++ |+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|
T Consensus 279 ~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg 352 (435)
T 1p22_A 279 KVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG 352 (435)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred EEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence 99999999999998865 58999998 4677877 458999999999999999999999999999999 78899999
Q ss_pred ECCCCEEEEEcCCCc
Q psy4876 573 GADETLRLWKIFEKV 587 (609)
Q Consensus 573 s~Dg~I~iWdl~~~~ 587 (609)
+.||.|++||+..+.
T Consensus 353 ~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 353 AYDGKIKVWDLVAAL 367 (435)
T ss_dssp ETTSCEEEEEHHHHT
T ss_pred eCCCcEEEEECCCCC
Confidence 999999999997654
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=9e-28 Score=253.18 Aligned_cols=270 Identities=14% Similarity=0.139 Sum_probs=222.4
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE-EEEeCCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML-GVGTSLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L-asgs~dg~I~ 360 (609)
+++++.|+.|++||+.+ ++.. ..+.+...+.+++|+|+|++| ++++.|+.|+
T Consensus 5 ~vs~~~d~~v~v~d~~~-------------------------~~~~--~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~ 57 (391)
T 1l0q_A 5 YIANSESDNISVIDVTS-------------------------NKVT--ATIPVGSNPMGAVISPDGTKVYVANAHSNDVS 57 (391)
T ss_dssp EEEETTTTEEEEEETTT-------------------------TEEE--EEEECSSSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred EEEcCCCCEEEEEECCC-------------------------CeEE--EEeecCCCcceEEECCCCCEEEEECCCCCeEE
Confidence 45567799999999987 5433 344444669999999999877 5666899999
Q ss_pred EEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEE-EEE
Q psy4876 361 LWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYL-ASG 436 (609)
Q Consensus 361 iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-asg 436 (609)
+||+.+++.+..+..+. .+.+++|+ +..| ++++.++.|++||+.++ ..+..+.. ...+.+++|+|+|++| +++
T Consensus 58 v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~~ 134 (391)
T 1l0q_A 58 IIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN-TVAGTVKT-GKSPLGLALSPDGKKLYVTN 134 (391)
T ss_dssp EEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSSEEEEEE
T ss_pred EEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCC-eEEEEEeC-CCCcceEEECCCCCEEEEEe
Confidence 99999999999888665 89999994 6666 45557799999999987 45555554 4578999999999977 678
Q ss_pred eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEE
Q psy4876 437 GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCAL 516 (609)
Q Consensus 437 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl 516 (609)
+.|+.|++||+.++ +.+..+..+ ..+.+++|+|++..+++++ ..++.|++||+.+++++..+..+..+.++
T Consensus 135 ~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~dg~~l~~~~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 205 (391)
T 1l0q_A 135 NGDKTVSVINTVTK------AVINTVSVG-RSPKGIAVTPDGTKVYVAN--FDSMSISVIDTVTNSVIDTVKVEAAPSGI 205 (391)
T ss_dssp TTTTEEEEEETTTT------EEEEEEECC-SSEEEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEEECSSEEEEE
T ss_pred CCCCEEEEEECCCC------cEEEEEecC-CCcceEEECCCCCEEEEEe--CCCCEEEEEECCCCeEEEEEecCCCccce
Confidence 88999999999987 566666655 4579999999998777776 37899999999999999998888899999
Q ss_pred EEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEE-EEEECCCCEEEEEcCCCccchh
Q psy4876 517 LWNSDYKELVSAHGF-AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTV-LSAGADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L-~s~s~Dg~I~iWdl~~~~~~~k 591 (609)
+|+|++++++++... .++.|++||+.+++.+..+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++....
T Consensus 206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 999999999886421 58999999999999998888765 57899999999987 5668899999999998765543
No 105
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-29 Score=291.36 Aligned_cols=246 Identities=20% Similarity=0.316 Sum_probs=211.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC--CCeeEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS--AKKKCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~ 407 (609)
|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC
Confidence 89999999999999999999999999999998 557788999999999999994 789999999999999999986
Q ss_pred C-eeEEEEccCCCCeEEEEEccC--CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC-------
Q psy4876 408 D-HKVALLQNHTQEVCGLKWSPD--GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW------- 477 (609)
Q Consensus 408 ~-~~~~~~~~h~~~V~~l~~spd--g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~------- 477 (609)
. ..+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++.+.. .....+.+|...|.+++|+|.
T Consensus 88 ~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 88 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSCEEEEEECCCC------
T ss_pred cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCceEEEEecCcccccccc
Confidence 3 256778889999999999999 99999999999999999987632 344566789999999999995
Q ss_pred -----CCcEEEEEeccCCCeEEEEECCCC----ceeEEEcC-CCCeEEEEEcCC---CCeEEEEEecCCCeEEEEECCCC
Q psy4876 478 -----SPNVLASGGGTADRHIYFWNVSSG----ACLDSIDT-KSQVCALLWNSD---YKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 478 -----~~~llasggGs~Dg~I~iwd~~t~----~~~~~~~~-~~~v~sl~~s~~---g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
+..++++|+ .||.|++||++++ .+...+.. ...|.+++|+|+ +.+++++ +.||.|++||+.++
T Consensus 164 ~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~--s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 164 HNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV--SQDRTCIIWTQDNE 239 (753)
T ss_dssp ---CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE--ESSSCEEEEEESSS
T ss_pred cccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE--ecCCEEEEecCCCC
Confidence 235666664 7999999999877 34455554 458999999999 8888884 48999999999876
Q ss_pred c-----eEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 545 V-----KVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 545 ~-----~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
. .+.....|...|++++|+|+|.+|++++.||.|++|++....
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 240 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 4 333335688999999999999999999999999999998543
No 106
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.1e-28 Score=260.06 Aligned_cols=246 Identities=9% Similarity=0.047 Sum_probs=175.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-----EecCCCCceEEEEe----------cCCEEEEEecCCeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-----TMDGHDVRVGALAW----------NTYILSSGSRCGNI 399 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~----------~~~~L~sgs~dg~I 399 (609)
...+....+.+++.+||+|+.|++|+|||+.+++... .+.+|...|.+++| ++++|++|+.|++|
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 3344444555667899999999999999998876533 46789999999999 35799999999999
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCc-------------------cce
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFST-------------------QPI 459 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~-------------------~~~ 459 (609)
++||+.+.. .+..+..|...|.+++|+|++. +|++|+.|++|++||++++...... ...
T Consensus 169 ~~Wd~~~~~-~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 247 (393)
T 4gq1_A 169 IIWRLTDEG-PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNT 247 (393)
T ss_dssp EEEEEETTE-EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC--
T ss_pred EEEECCCCc-eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceee
Confidence 999998864 5666777899999999999874 7999999999999999877431110 011
Q ss_pred EeecCCcccEEEEEEc-CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------------------CCeEEEEEc
Q psy4876 460 HSLSRHQAAVKAIAWC-PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------------SQVCALLWN 519 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~s-p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------------~~v~sl~~s 519 (609)
....+|...|.++.|+ +++ ..++++ +.|+.+++||+.++.....+..+ .......|+
T Consensus 248 ~~~~~~~~~v~~v~~~~~dg-~~l~s~--s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 248 CHSSGIASSLANVRWIGSDG-SGILAM--CKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp ----CCSSSCSEEEEETTTT-CEEEEE--CTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred eecccccccceeeeeecCCC-CEEEEE--eCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 1234677889999987 566 456665 48999999999887655444321 112233444
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 520 SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 520 ~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
+....+++++|..|+.|+|||+.++..+..+.+|...|.+++|+|||++||+++.|| +.+|++..
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 443333344477899999999999999888889999999999999999999998765 66676643
No 107
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.1e-27 Score=254.68 Aligned_cols=241 Identities=21% Similarity=0.344 Sum_probs=207.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
..+.+++|++ ..+++++.||.|+|||+.+++....+.. |...|.+++| ++.+|++|+.||.|++||+.++ ..+.
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~ 170 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-TKLR 170 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC-eEEE
Confidence 4466677775 4577888999999999999988887776 8899999999 5789999999999999999987 4778
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+.+|...|.+++| ++.+|++|+.||.|++||++... ..+..+.+|...|.+++|+|++. ++++|+ .|+.
T Consensus 171 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~d~~ 240 (401)
T 4aez_A 171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN-----HQIGTLQGHSSEVCGLAWRSDGL-QLASGG--NDNV 240 (401)
T ss_dssp EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-----ceeeEEcCCCCCeeEEEEcCCCC-EEEEEe--CCCe
Confidence 88899999999999 46799999999999999998542 56788889999999999999874 666664 8999
Q ss_pred EEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEE
Q psy4876 493 IYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAH-GFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~s-G~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~ 570 (609)
|++||+++++++..+..+ ..|.+++|+|++..+++++ |..|+.|++||+.+++.+..+. |...|.+++|+|++.+|+
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred EEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEE
Confidence 999999999999888654 5899999999887666654 4579999999999999998886 667899999999999999
Q ss_pred EEE--CCCCEEEEEcCCCccch
Q psy4876 571 SAG--ADETLRLWKIFEKVKSK 590 (609)
Q Consensus 571 s~s--~Dg~I~iWdl~~~~~~~ 590 (609)
+++ .||.|++|++..+....
T Consensus 320 ~~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EEECTTTCEEEEEEEETTEEEE
T ss_pred EEeecCCCcEEEEecCCcccee
Confidence 965 89999999998865443
No 108
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=5.5e-28 Score=256.71 Aligned_cols=243 Identities=19% Similarity=0.327 Sum_probs=202.0
Q ss_pred CeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCe----eEEEecCCCCceEEEEe---cCCEEEEEecCCeEEEEEcCCCC
Q psy4876 337 NVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKK----KCRTMDGHDVRVGALAW---NTYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 337 ~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~---~~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
....++++|+.. ++++++.||.|+||++.... .+..+.+|...|.+++| ++.+|++|+.||.|++||+.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 344688888874 44457889999999996542 34567889999999999 46899999999999999998863
Q ss_pred ------eeEEEEccCCCCeEEEEEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCC
Q psy4876 409 ------HKVALLQNHTQEVCGLKWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 409 ------~~~~~~~~h~~~V~~l~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~ 479 (609)
..+..+.+|...|.+++|+|++ .+|++|+.|+.|++||+.++ +.+..+ ..|...|.+++|+|++.
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~ 189 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDGA 189 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTSS
T ss_pred CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC------CccEEEecCCCCCceEEEEECCCCC
Confidence 3577888999999999999998 69999999999999999988 677888 78999999999999886
Q ss_pred cEEEEEeccCCCeEEEEECCCCceeEEE-cCCC--CeEEEEEcCCCCeEEEEEe-cCCCeEEEEECCCCce-EEEE-eCC
Q psy4876 480 NVLASGGGTADRHIYFWNVSSGACLDSI-DTKS--QVCALLWNSDYKELVSAHG-FAQNQLIIWKYPSLVK-VAEL-HGH 553 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t~~~~~~~-~~~~--~v~sl~~s~~g~~l~~~sG-~~dg~I~Iwd~~~~~~-~~~l-~~h 553 (609)
. |++++ .|+.|++||+++++.+..+ ..+. .+..+.|++++.+++++.. ..++.|++||+.++.. +... ..|
T Consensus 190 ~-l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 266 (402)
T 2aq5_A 190 L-ICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT 266 (402)
T ss_dssp C-EEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC
T ss_pred E-EEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC
Confidence 4 45543 7999999999999999888 4443 4899999999998887310 5799999999988664 3333 357
Q ss_pred CCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCcc
Q psy4876 554 SARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKVK 588 (609)
Q Consensus 554 ~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~~ 588 (609)
...|.+++|+|++.+|++++ .||.|++|++.++..
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 78899999999999997555 799999999998763
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.8e-29 Score=269.51 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=202.2
Q ss_pred eeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
-.|.+|+||||| +++++.|++|+ |... +. .+ + .|...|.+|+|+|+|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~-------------------------~~--~l-~-gh~~~v~~V~FsPdg 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKY-------------------------AK--DI-N-CNSKNLFHVKEFPLE 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECC-------------------------CS--CC-S-SBGGGTEEEEEECCC
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccc-------------------------cc--ee-c-CCCccEEEEEECCCC
Confidence 357889999998 55577899999 7554 22 12 1 289999999999998
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-----
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ----- 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----- 419 (609)
.++.+.+|+.+ ....+. .|...|.+++| +|..|++++.||.|++||... .+..+. |..
T Consensus 65 -------~~~~~~~~~~~---~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~ 130 (588)
T 2j04_A 65 -------FENKLDFELAQ---QNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSR 130 (588)
T ss_dssp -------CCCTTTTSCCC---SSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTT
T ss_pred -------CcceEEEEeCC---CceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccc
Confidence 45555555543 222333 46889999999 689999999999999999543 555566 665
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCC-CccceEee----cCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSL----SRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~~~~~----~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.|.+++|||||++||+|+.||+|+|||+..+.... ..-.+..+ .+|...|.+++|+|+| +++++ .|+.|+
T Consensus 131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVr 205 (588)
T 2j04_A 131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVF 205 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEE
Confidence 59999999999999999999999999998762100 00024565 6788899999999998 44443 699999
Q ss_pred EEECCCCce---eEEEc-CC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE--eCCCC
Q psy4876 495 FWNVSSGAC---LDSID-TK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM--SPDET 567 (609)
Q Consensus 495 iwd~~t~~~---~~~~~-~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~ 567 (609)
+||+..+.. ..++. .+ ..|.+++|+ +..+++++ ++.|++||+.++.......+|.+.|.+++| +||+.
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~ 280 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKEST 280 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCE
T ss_pred EEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCC
Confidence 999998774 34563 33 589999999 67887753 699999999988774444489999999999 99999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
.|++++.||+ ++|.+.
T Consensus 281 ~La~a~edG~-klw~~d 296 (588)
T 2j04_A 281 ILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEECSSCEE-EEEESS
T ss_pred EEEEEcCCCC-EEEeec
Confidence 9999999999 999974
No 110
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5e-28 Score=251.67 Aligned_cols=258 Identities=11% Similarity=0.052 Sum_probs=201.3
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
+++++.||.|++||+.+ +....... ...|.++.|+|+ +++|+.|+.|++
T Consensus 51 l~sg~~Dg~v~iwd~~~-------------------------~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~ 99 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKD-------------------------SKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLL 99 (343)
T ss_dssp EEEEEETTEEEEEEESS-------------------------SSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEE
T ss_pred EEEECCCCcEEEEECCC-------------------------CcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEE
Confidence 77799999999999988 44332222 356778888888 899999999999
Q ss_pred EeCC---------CCeeEEEec-CCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCCeeEEEE-ccCCCCeEEEEE
Q psy4876 362 WDVS---------AKKKCRTMD-GHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRDHKVALL-QNHTQEVCGLKW 426 (609)
Q Consensus 362 wd~~---------~~~~~~~l~-~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~ 426 (609)
|+.. +++.+..+. +|...|.+++|+ +.+|++++.||.|++||++++. ..... ..|...|.+++|
T Consensus 100 w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 100 LYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp EETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEE
T ss_pred EEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEE
Confidence 9765 444444444 677899999994 5799999999999999999875 44444 345668999999
Q ss_pred ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccce-EeecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 427 SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPI-HSLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 427 spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
+|+|.+|++|+.||.|++||++++ ..+ ..+.. |...|.+++|+|++. +|++++ |+.|++||+++++++
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGT 248 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTC
T ss_pred CCCCCEEEEEcCCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcc
Confidence 999999999999999999999988 444 67777 999999999999985 566653 459999999998876
Q ss_pred EEEcC---C-CCe--EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC---CCCEEEEEECC
Q psy4876 505 DSIDT---K-SQV--CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP---DETTVLSAGAD 575 (609)
Q Consensus 505 ~~~~~---~-~~v--~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~L~s~s~D 575 (609)
..+.. + ..+ .+++|+|++++|+++++ .++.|+||++......... ..+..++|++ ++..|++++.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d 323 (343)
T 3lrv_A 249 LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGD 323 (343)
T ss_dssp BSSCCCBC-----CCEEEEECTTSSEEEEEET-TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEET
T ss_pred eeecccccccccccceEEEECCCCCEEEEecC-CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecC
Confidence 55442 1 223 46999999999998642 3899999999766554433 5678888998 88999999999
Q ss_pred CCEEEEEcCCC
Q psy4876 576 ETLRLWKIFEK 586 (609)
Q Consensus 576 g~I~iWdl~~~ 586 (609)
+.+.++-....
T Consensus 324 ~~~~~~~~~~~ 334 (343)
T 3lrv_A 324 GGIAAILKTND 334 (343)
T ss_dssp TEEEEEEECSS
T ss_pred CceEEEEecCC
Confidence 99998865443
No 111
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=2.4e-27 Score=242.27 Aligned_cols=282 Identities=10% Similarity=0.010 Sum_probs=186.0
Q ss_pred eeEEEEEecCCC----eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccc-cccceeeeeeec-CCCCeEEEEE
Q psy4876 270 YYLNLIDWSHFN----VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQ-DNRAIDHLMDLE-GNENVCSVAW 343 (609)
Q Consensus 270 ~~v~~l~wsp~~----lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-h~~~V~~v~~ 343 (609)
..|.++-|-..+ -+.++....|++|+..+..+-.-...++.....++....- +...+.++.--. +...|.+++|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~ 119 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFC 119 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC
T ss_pred EEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEE
Confidence 347778887653 5667888999999998831111111122221111111100 001111111111 3345555666
Q ss_pred ccC----CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccC
Q psy4876 344 IQE----GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS--RCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 344 spd----g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
+|+ +..+++++. .+.||++.+ ++++.+++ .|+.|++|++......+..+.+|
T Consensus 120 spd~~~~~~~l~s~g~--~~~v~~l~~--------------------g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 120 SSDDESEKQVLLKSGN--IKAVLGLTK--------------------RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp ------CCEEEEEEEE--EEEEEEETT--------------------TEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred CCCccccccEEEeCCC--eEEEEecCC--------------------CcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 666 555555443 255554432 33333432 58899999996645677788899
Q ss_pred CCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc---ccEEEEEEcCCCCcEEEE-------
Q psy4876 418 TQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ---AAVKAIAWCPWSPNVLAS------- 484 (609)
Q Consensus 418 ~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~llas------- 484 (609)
...+..++|++ ++.+||+|+.|++|+|||+.++ +.++++.+|. ..+.+++|+|++..+++.
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w 251 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKE 251 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC------CEEEEEECCC---CCCEEEEEEETTEEEEEEC------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC------cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcc
Confidence 99999999999 7899999999999999999998 7888887654 467788999998654320
Q ss_pred --EeccCCCeEEEEECCCCceeEEEc-----CC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC
Q psy4876 485 --GGGTADRHIYFWNVSSGACLDSID-----TK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 485 --ggGs~Dg~I~iwd~~t~~~~~~~~-----~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~ 556 (609)
..|+.|++|++||..+++++..+. .+ ..+.+..+ ++..+++ |+.|++|+|||+.+++++.++.+|...
T Consensus 252 ~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~ 327 (356)
T 2w18_A 252 SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQ 327 (356)
T ss_dssp ------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE--EETTSCEEEEETTTCSEEEEECCC--C
T ss_pred eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCC
Confidence 124689999999999999887652 22 12333333 3666666 558999999999999999999999876
Q ss_pred EE-EEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 557 VL-NLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 557 V~-~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+. .++|+|||++|++|+.|++|+|||+
T Consensus 328 vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 328 HWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 65 5899999999999999999999996
No 112
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=3.6e-27 Score=244.72 Aligned_cols=248 Identities=16% Similarity=0.231 Sum_probs=201.9
Q ss_pred eeeeeec-CCCCeEEEEEccC---CCEEEEEeCCCeEEEEeCCC-CeeE-EEecCCCCceEEEEe--cCCEEEEEecCCe
Q psy4876 327 DHLMDLE-GNENVCSVAWIQE---GYMLGVGTSLGTVQLWDVSA-KKKC-RTMDGHDVRVGALAW--NTYILSSGSRCGN 398 (609)
Q Consensus 327 ~~l~~~~-h~~~V~~v~~spd---g~~Lasgs~dg~I~iwd~~~-~~~~-~~l~~h~~~V~~l~~--~~~~L~sgs~dg~ 398 (609)
..+..+. |.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++| ++.+|++++.||.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 3444555 9999999999999 69999999999999999987 5444 788899999999999 5789999999999
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEE--ccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKW--SPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
|++||+.+.. ...+..|...|.+++| ++++.+|++++.||.|++||++++ +.+..+..+. .+.++.+.+
T Consensus 110 v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~-~~~~~~~~~ 180 (368)
T 3mmy_A 110 AKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------NPMMVLQLPE-RCYCADVIY 180 (368)
T ss_dssp EEEEETTTTE--EEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS------SCSEEEECSS-CEEEEEEET
T ss_pred EEEEEcCCCC--ceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC------cEEEEEecCC-CceEEEecC
Confidence 9999999863 3346679999999999 899999999999999999999987 6677776554 566777765
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCe----EEEEEecCCCeEEEEECCCC---ce
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLWNSDYKE----LVSAHGFAQNQLIIWKYPSL---VK 546 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~----l~~~sG~~dg~I~Iwd~~~~---~~ 546 (609)
. .++ ++ +.++.+++||+.......... ....+..+.+.++... +++ +..|+.|++|++... ..
T Consensus 181 ~--~~~-~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~~ 253 (368)
T 3mmy_A 181 P--MAV-VA--TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAKD 253 (368)
T ss_dssp T--EEE-EE--EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHHH
T ss_pred C--eeE-EE--eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCcccc
Confidence 3 344 43 269999999998765543332 2235666666665544 666 558999999999887 66
Q ss_pred EEEEeCCCC------------CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccch
Q psy4876 547 VAELHGHSA------------RVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 547 ~~~l~~h~~------------~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+..+.+|.. .|.+++|+|++++|++++.||.|+|||+.++....
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~ 309 (368)
T 3mmy_A 254 NFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK 309 (368)
T ss_dssp SEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred ceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE
Confidence 778888876 79999999999999999999999999999876544
No 113
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.6e-27 Score=256.13 Aligned_cols=248 Identities=19% Similarity=0.354 Sum_probs=201.9
Q ss_pred eeEEEEEecCC-C--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 270 YYLNLIDWSHF-N--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 270 ~~v~~l~wsp~-~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..|++++|+|+ + +++++.+|.|+||++........ ..+....+..+. |...|++++|+|
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-----------------PSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-----------------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-----------------ccccCCCcEEecCCCCCeEEEEeCC
Confidence 45889999997 3 44567799999999975211000 002234455555 889999999999
Q ss_pred CCC-EEEEEeCCCeEEEEeCCCCee-------EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC--eeEE
Q psy4876 346 EGY-MLGVGTSLGTVQLWDVSAKKK-------CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD--HKVA 412 (609)
Q Consensus 346 dg~-~Lasgs~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~--~~~~ 412 (609)
++. +|++|+.||.|+|||+..+.. ...+.+|...|.+++|+ +.+|++++.||.|++||++... ..+.
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~ 271 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSH 271 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSE
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCccee
Confidence 997 999999999999999987322 46777899999999994 5799999999999999999763 4567
Q ss_pred EEccCCCCeEEEEEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 413 LLQNHTQEVCGLKWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.+..|...|.+++|+|++. +|++|+.||.|++||++... .++..+..|...|.+++|+|++..++++++ .|+
T Consensus 272 ~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-----~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~ 344 (430)
T 2xyi_A 272 TVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-----LKLHSFESHKDEIFQVQWSPHNETILASSG--TDR 344 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----SCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTS
T ss_pred EeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----CCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCC
Confidence 7789999999999999887 79999999999999999742 578888899999999999999988888885 799
Q ss_pred eEEEEECCC--------------CceeEEEcCC-CCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCC
Q psy4876 492 HIYFWNVSS--------------GACLDSIDTK-SQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 492 ~I~iwd~~t--------------~~~~~~~~~~-~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~ 543 (609)
.|++||+.. ...+..+..+ ..|.+++|+|++. .+++ +..||.|+||++..
T Consensus 345 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 345 RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 999999986 2455555554 4799999999999 5555 34899999999864
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.96 E-value=1.4e-26 Score=247.84 Aligned_cols=255 Identities=21% Similarity=0.406 Sum_probs=201.8
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
..+|++|+|+|++ +++++.|+.|+|||+.+ +. .+..+. |...|.+++|+
T Consensus 147 ~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~-------------------------~~--~~~~~~~h~~~v~~~s~~- 198 (420)
T 4gga_A 147 GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ-------------------------QK--RLRNMTSHSARVGSLSWN- 198 (420)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTT-------------------------TE--EEEEECCCSSCEEEEEEE-
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEcCC-------------------------Cc--EEEEEeCCCCceEEEeeC-
Confidence 4579999999996 66788999999999987 44 344455 88999988874
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCC
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAK-KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQ 419 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~ 419 (609)
+.+|++|+.|+.+++||.... ..+..+.+|...+..+.| ++.++++++.||.|++|+...+. ..+.....|..
T Consensus 199 -~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~ 277 (420)
T 4gga_A 199 -SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 277 (420)
T ss_dssp -TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS
T ss_pred -CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC
Confidence 679999999999999998864 566788999999999999 57999999999999999998754 24567788999
Q ss_pred CeEEEEEccCC-CEEEEE--eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 420 EVCGLKWSPDG-RYLASG--GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 420 ~V~~l~~spdg-~~lasg--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
.|.+++|+|++ .+++++ +.|++|++||+.++ ..+..+..| ..+.++.|++++..+++++ |..|+.|+||
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~------~~~~~~~~~-~~v~~~~~~~~~~~lv~~s-g~~d~~I~iw 349 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG------ACLSAVDAH-SQVCSILWSPHYKELISGH-GFAQNQLVIW 349 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT------EEEEEEECS-SCEEEEEEETTTTEEEEEE-CTTTCCEEEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc------ccceeeccc-cceeeeeecCCCCeEEEEE-ecCCCEEEEE
Confidence 99999999955 455554 47999999999988 666666644 5789999999987666554 4689999999
Q ss_pred ECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 497 NVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 497 d~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
|+.+++++..+..| ..|.+++|+|+|.+|+++ +.|++|+|||+....+......+...+....|
T Consensus 350 d~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~--s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 350 KYPTMAKVAELKGHTSRVLSLTMSPDGATVASA--AADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE--ETTTEEEEECCSCSSCC---------------
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE--ecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 99999999999866 589999999999999985 48999999999877666555555444433333
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.5e-27 Score=249.22 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=165.2
Q ss_pred CCCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe
Q psy4876 334 GNENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++..+.+++|+|||++||+++ .|+.|+|||+.+++.+..+. |...|.+++| ++.+|++++.+ .+.+|+..++..
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~ 209 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSC 209 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCE
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcc
Confidence 556799999999999987655 68999999999999998886 7788999999 57899998865 466666665543
Q ss_pred eE-EEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 KV-ALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 ~~-~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.. .....|...|.+++|+|++.++++++.|+ .+++||+..... .......+.+|...|.+++|+|+| .+|++
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~V~~~~~Spdg-~~las 286 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKGITSMDVDMKG-ELAVL 286 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSCEEEEEECTTS-CEEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeeeeecCCCCCeEeEEECCCC-CceEE
Confidence 33 34557889999999999999999999887 688899876521 112345677899999999999998 47777
Q ss_pred EeccCCCeEEEEECCCCceeEEE-cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSI-DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~-~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
|+ .|+.|+|||+.+++++..+ .. ...|++++|+|+|++|+++ +.|++|+|||++.
T Consensus 287 gs--~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~--S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 287 AS--NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASV--SAANTIHIIKLPL 343 (365)
T ss_dssp EE--TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEE--ETTSEEEEEECCT
T ss_pred Ec--CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEE--eCCCeEEEEEcCC
Confidence 64 8999999999999999886 44 4589999999999999994 4899999999964
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-27 Score=275.25 Aligned_cols=246 Identities=19% Similarity=0.316 Sum_probs=206.6
Q ss_pred ceeEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~sp 345 (609)
.-.|++++|+|++ +++++.||.|+|||+.. +....+..+. |.+.|++++|++
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~-------------------------~~~~~~~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEG-------------------------ETHKLIDTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEET-------------------------TEEEEEEEECCCSSCEEEEEECC
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCC-------------------------CCCccceeccCCcCceEEEEecC
Confidence 3458999999986 77788999999999976 4556666776 999999999998
Q ss_pred C--CCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEec----CCEEEEEecCCeEEEEEcCCCC-eeEEEEcc
Q psy4876 346 E--GYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAWN----TYILSSGSRCGNIVHHDVRSRD-HKVALLQN 416 (609)
Q Consensus 346 d--g~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~~----~~~L~sgs~dg~I~iwd~~~~~-~~~~~~~~ 416 (609)
+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ +.+|++|+.||.|++||++... .....+.+
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~ 143 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec
Confidence 8 9999999999999999999887 778888999999999994 7899999999999999998763 24556778
Q ss_pred CCCCeEEEEEcc-------------CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcE
Q psy4876 417 HTQEVCGLKWSP-------------DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNV 481 (609)
Q Consensus 417 h~~~V~~l~~sp-------------dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~l 481 (609)
|...|.+++|+| ++.+|++|+.||.|++||++.+... ......+.+|...|.+++|+|++ ..+
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 999999999999 5899999999999999999876321 24556778999999999999994 467
Q ss_pred EEEEeccCCCeEEEEECCCCcee-----EE-EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 482 LASGGGTADRHIYFWNVSSGACL-----DS-IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~-----~~-~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
+++|+ .||.|++||+.++... .. ..+...|.+++|+|++.++++ |+.||.|+||++..+.
T Consensus 222 l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 222 LASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEEEE--SSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCSSS
T ss_pred EEEEe--cCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCCCC
Confidence 77764 8999999999986421 11 123458999999999999998 4589999999998543
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3.2e-26 Score=244.67 Aligned_cols=257 Identities=7% Similarity=0.025 Sum_probs=213.0
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-----EecCCCCceEEEEe--cCCEEEEEecC
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-----TMDGHDVRVGALAW--NTYILSSGSRC 396 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-----~l~~h~~~V~~l~~--~~~~L~sgs~d 396 (609)
+....+..+.....+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|...|.+++| ++.++++++.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 111 ITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp CSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred CcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 444555566545667799999977888888888999999999998887 34578999999999 57899999999
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
+.|++||+.++ ..+..+..|...+.+++|+|++++++++ +.|+.|++||++++ +.+..+..+ ..+.+++|+
T Consensus 191 ~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~-~~~~~~~~~ 262 (433)
T 3bws_A 191 NAVHVFDLKTL-AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK------LEIRKTDKI-GLPRGLLLS 262 (433)
T ss_dssp TEEEEEETTTC-CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT------EEEEECCCC-SEEEEEEEC
T ss_pred CEEEEEECCCc-eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC------cEEEEecCC-CCceEEEEc
Confidence 99999999986 4677777899999999999999988554 47999999999987 566666544 458999999
Q ss_pred CCCCcEEEEEecc-----CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 476 PWSPNVLASGGGT-----ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 476 p~~~~llasggGs-----~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
|++..+++++.+. .|+.|++||+.+++.+..+.....+..++|+|+++.++++ +..++.|++||+.+++.+..+
T Consensus 263 ~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~~~~~~~~~~ 341 (433)
T 3bws_A 263 KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDLKEKKVQKSI 341 (433)
T ss_dssp TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEECCCCcEEEEe
Confidence 9997666654221 4889999999999988888766789999999999887765 458999999999999888877
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEEC---------------CCCEEEEEcCCCccch
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGA---------------DETLRLWKIFEKVKSK 590 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~---------------Dg~I~iWdl~~~~~~~ 590 (609)
. +...+.+++|+|+|++|++++. ||.|++||+.+++...
T Consensus 342 ~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 342 P-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp E-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred c-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 6 6788999999999999998887 5799999998876544
No 118
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=9.1e-27 Score=243.88 Aligned_cols=237 Identities=13% Similarity=0.096 Sum_probs=183.7
Q ss_pred eec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEE-EEEecCCeEEEEEcCC
Q psy4876 331 DLE-GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYIL-SSGSRCGNIVHHDVRS 406 (609)
Q Consensus 331 ~~~-h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~ 406 (609)
+.. |...|.+++|+|||++||+|+.+| ++|||+.+++.......+. +..+++ +++.+ ++++.|+.|++||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRH--LSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSC--CCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCC--eEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 344 889999999999999999998876 7899999877766554443 445555 56665 6778889999999998
Q ss_pred CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 407 RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+ ..+..+. |...|.+++|++++ ++++. |+.|++||+.++. +.+..+.. ....+++++ .+++.++
T Consensus 91 ~-~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~---~~la~~s 154 (355)
T 3vu4_A 91 K-QDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPW-----KRITDDIR---FGGVCEFSN---GLLVYSN 154 (355)
T ss_dssp T-EEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTC-----CBSSCCEE---EEEEEEEET---TEEEEEE
T ss_pred C-cEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCc-----eeeEEecc---CCceEEEEc---cEEEEeC
Confidence 7 4566665 67799999999864 44443 7899999998761 22233322 344566666 4555543
Q ss_pred ccCCCeEEEEECCCCc----------------eeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEE
Q psy4876 487 GTADRHIYFWNVSSGA----------------CLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQ-LIIWKYPSLVKVA 548 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t~~----------------~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~-I~Iwd~~~~~~~~ 548 (609)
|+.||.|++||+.++. ++..+..| ..|.+++|+|++++|+++ +.|++ |+|||+.+++.+.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~--s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATC--SQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEE--ETTCSEEEEEETTTCCEEE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEE--eCCCCEEEEEECCCCcEEE
Confidence 4689999999999876 25666655 589999999999999995 48998 9999999999999
Q ss_pred EEe-C-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 549 ELH-G-HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 549 ~l~-~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
.+. + |...|.+++|+|||++|++++.|++|+|||+.....
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 998 6 999999999999999999999999999999987653
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.6e-27 Score=251.33 Aligned_cols=238 Identities=10% Similarity=0.042 Sum_probs=197.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe---eEEEecC-------------------------------------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK---KCRTMDG------------------------------------- 375 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~---~~~~l~~------------------------------------- 375 (609)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999977655 56899999999988 6655543
Q ss_pred -----------------CCCceEEEEe--cCCEE-EEEecCCeEEEEEcC--CCCeeEEEEc--cCCCCeEEEEEccCCC
Q psy4876 376 -----------------HDVRVGALAW--NTYIL-SSGSRCGNIVHHDVR--SRDHKVALLQ--NHTQEVCGLKWSPDGR 431 (609)
Q Consensus 376 -----------------h~~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~--~~~~~~~~~~--~h~~~V~~l~~spdg~ 431 (609)
|...|.+++| ++.+| ++|+.||.|++||+. ++ ..+..+. .|...|++++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-NVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-SCEEEEEEEECSSCEEEEEECTTSS
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-ceeeeeecccCCCCceEEEEcCCCC
Confidence 3337999999 46775 899999999999998 55 3555554 6778999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC---CCcEEEEEeccCCCeEEEEECCCCceeEEEc
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW---SPNVLASGGGTADRHIYFWNVSSGACLDSID 508 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~llasggGs~Dg~I~iwd~~t~~~~~~~~ 508 (609)
+|++|+.||.|++|++..+.... .....+.+|...|.+++|+|+ + .+|++|+ .|+.|++||+.+++++..+.
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~--~d~~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEK--FTQEPILGHVSMLTDVHLIKDSDGH-QFIITSD--RDEHIKISHYPQCFIVDKWL 237 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSS--CCCCCSEECSSCEEEEEEEECTTSC-EEEEEEE--TTSCEEEEEESCTTCEEEEC
T ss_pred EEEEEeCCCcEEEEecCCccccc--ccceeeecccCceEEEEEcCCCCCC-cEEEEEc--CCCcEEEEECCCCceeeeee
Confidence 99999999999999998773210 134467789999999999998 5 5666664 89999999999999887743
Q ss_pred --CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-------------------------CCCEEEEE
Q psy4876 509 --TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH-------------------------SARVLNLA 561 (609)
Q Consensus 509 --~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h-------------------------~~~V~~l~ 561 (609)
+...|.+++|+ ++++|+++ +.|+.|+|||+.+++.+..+..+ ...|.+++
T Consensus 238 ~~h~~~v~~~~~s-d~~~l~s~--~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 238 FGHKHFVSSICCG-KDYLLLSA--GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CCCSSCEEEEEEC-STTEEEEE--ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred cCCCCceEEEEEC-CCCEEEEE--eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 44689999999 99999985 48999999999999988888632 35699999
Q ss_pred EeCCCCEEEEEE-CCCCEEEEEc
Q psy4876 562 MSPDETTVLSAG-ADETLRLWKI 583 (609)
Q Consensus 562 ~spdg~~L~s~s-~Dg~I~iWdl 583 (609)
|+|++++|++++ .|+.|+||++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999 8999999999
No 120
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2e-26 Score=242.82 Aligned_cols=280 Identities=20% Similarity=0.308 Sum_probs=191.0
Q ss_pred ceeEEEEEecC-CC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSH-FN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp-~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
...|.+++|+| ++ +++++.|+.|++||+.+ +.... .+.+...+.++.|++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------------------------~~~~~--~~~~~~~~~~~~~~~ 151 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT-------------------------LQTAD--VFNFEETVYSHHMSP 151 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTT-------------------------TEEEE--EEECSSCEEEEEECS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC-------------------------Cccce--eccCCCceeeeEeec
Confidence 44689999999 44 67788899999999987 44333 334678899999998
Q ss_pred CC---CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEE-----
Q psy4876 346 EG---YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALL----- 414 (609)
Q Consensus 346 dg---~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~----- 414 (609)
.+ .+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +. +|++|+.||.|++||++.....+..+
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 231 (408)
T 4a11_B 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231 (408)
T ss_dssp SCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT
T ss_pred CCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc
Confidence 54 599999999999999999999999999999999999994 44 79999999999999998875455555
Q ss_pred ----------ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 415 ----------QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 415 ----------~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
..|...|.+++|+|++++|++++.||.|++||+.++........ .........+........+..++++
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
T 4a11_B 232 KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG-KVCNNSKKGLKFTVSCGCSSEFVFV 310 (408)
T ss_dssp CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC-CCCCCCSSCCCCEECCSSSSCEEEE
T ss_pred ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc-cccccccccceeEEecCCCceEEEE
Confidence 57889999999999999999999999999999998742111000 0001111122222222333344544
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
+ .|+.|++||+.+++++..+..+ ..|.+++|+|++++|+++ +.||.|++||+.+++.+.....+.. ...+.
T Consensus 311 ~---~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~ 382 (408)
T 4a11_B 311 P---YGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG--SRDCNILAWVPSLYEPVPDDDETTT---KSQLN 382 (408)
T ss_dssp E---ETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE--ETTSCEEEEEECC--------------------
T ss_pred e---cCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE--CCCCeEEEEeCCCCCccCCCCceEe---ccccc
Confidence 3 6899999999999999999855 589999999999999984 4899999999999887765543322 22333
Q ss_pred C-CCCEEEEEECCCCEEEEEcC
Q psy4876 564 P-DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 p-dg~~L~s~s~Dg~I~iWdl~ 584 (609)
+ +...+.+++.|+.+++|+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 383 PAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ----------------------
T ss_pred cccceeecccCccCceeecCCc
Confidence 3 34455677789999999864
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-27 Score=247.23 Aligned_cols=231 Identities=9% Similarity=0.058 Sum_probs=185.6
Q ss_pred EEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcC---------CCCeeEE
Q psy4876 342 AWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVR---------SRDHKVA 412 (609)
Q Consensus 342 ~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~---------~~~~~~~ 412 (609)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++++.|++|++|+.. +......
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 345678899999999999999999998888876 456777788777 9999999999999765 3321223
Q ss_pred EEccCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccC
Q psy4876 413 LLQNHTQEVCGLKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTA 489 (609)
Q Consensus 413 ~~~~h~~~V~~l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~ 489 (609)
...+|...|.+++|+| ++++|++|+.||.|++||++++ +.+... ..|...|.+++|+|++ .++++| +.
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~~i~~~~~~pdg-~~lasg--~~ 190 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHSAKSDVEYSSGVLHKDS-LLLALY--SP 190 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEECCCSSCCCCEEEECTTS-CEEEEE--CT
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEecCCCCceEEEEECCCC-CEEEEE--cC
Confidence 3346778999999999 9999999999999999999987 444444 3455689999999988 577776 48
Q ss_pred CCeEEEEECCCCcee-EEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC---CCCCEE--EEE
Q psy4876 490 DRHIYFWNVSSGACL-DSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG---HSARVL--NLA 561 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~---h~~~V~--~l~ 561 (609)
|+.|++||+++++.+ ..+.. ...|.+++|+|++.+|++++ ++.|+|||+++++.+..+.. |...+. +++
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEE
Confidence 999999999999987 77765 56999999999999999854 45999999998876554433 434444 699
Q ss_pred EeCCCCEEEEEEC-CCCEEEEEcCCCc
Q psy4876 562 MSPDETTVLSAGA-DETLRLWKIFEKV 587 (609)
Q Consensus 562 ~spdg~~L~s~s~-Dg~I~iWdl~~~~ 587 (609)
|+|+|++|++++. |+.|+||++....
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 9999999999999 9999999997654
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-27 Score=255.48 Aligned_cols=255 Identities=8% Similarity=0.043 Sum_probs=197.6
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.-.|.+++|+|++ .++.+.+|+. ....+..+.|...|.+++|+|+|.
T Consensus 52 ~~~v~~V~FsPdg-----~~~~~~~~~~----------------------------~~~~~~~~~~~~~V~~vawSPdG~ 98 (588)
T 2j04_A 52 SKNLFHVKEFPLE-----FENKLDFELA----------------------------QQNGLLNSQPVCYPRVCKPSPIDD 98 (588)
T ss_dssp GGGTEEEEEECCC-----CCCTTTTSCC----------------------------CSSCSSTTSCSCCEEEEEECSSSS
T ss_pred CccEEEEEECCCC-----CcceEEEEeC----------------------------CCceEeecCCCCcEEEEEECCCCC
Confidence 4468889999988 3444444443 223344445678999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCC-----ceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe------eEEEE-
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-----RVGALAW--NTYILSSGSRCGNIVHHDVRSRDH------KVALL- 414 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-----~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~------~~~~~- 414 (609)
+||+++.||.|+|||.+. ++..+. |.. .|.+++| +|++|++|+.||+|++||+..+.. .+..+
T Consensus 99 ~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~ 175 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIR 175 (588)
T ss_dssp CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEE
T ss_pred EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeee
Confidence 999999999999999654 777777 665 5999999 689999999999999999998631 35665
Q ss_pred ---ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 415 ---QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 415 ---~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
.+|...|.+++|+||| +++++.|+.|++||+..+.. ......+ .+|...|.+++|+ + ..+++++ +
T Consensus 176 ~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~---~~~~~tL~~~h~~~V~svaFs--g-~~LASa~---~ 244 (588)
T 2j04_A 176 LSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH---QPVSRMIQNASRRKITDLKIV--D-YKVVLTC---P 244 (588)
T ss_dssp CSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSS---CCCEEEEECCCSSCCCCEEEE--T-TEEEEEC---S
T ss_pred cccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc---ccceeeecccccCcEEEEEEE--C-CEEEEEe---C
Confidence 6778899999999999 88889999999999987621 0123456 4788999999999 4 5777763 6
Q ss_pred CeEEEEECCCCce-eEEEcCCCCeEEEEE--cCCCCeEEEEEecCCCeEEEEECCCC-----------------------
Q psy4876 491 RHIYFWNVSSGAC-LDSIDTKSQVCALLW--NSDYKELVSAHGFAQNQLIIWKYPSL----------------------- 544 (609)
Q Consensus 491 g~I~iwd~~t~~~-~~~~~~~~~v~sl~~--s~~g~~l~~~sG~~dg~I~Iwd~~~~----------------------- 544 (609)
+.|++||+.+++. ...+.+...+..++| ++++..+++ ++.+|+ ++|.....
T Consensus 245 ~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 245 GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCC
Confidence 9999999998887 444455678999999 999988888 568999 99986421
Q ss_pred ceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 545 VKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
..+..+. +...|.+++|+|||+.+|+++.
T Consensus 322 ~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 322 NEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred Cceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 1111111 2345899999999999999875
No 123
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.9e-25 Score=232.97 Aligned_cols=279 Identities=12% Similarity=0.061 Sum_probs=218.4
Q ss_pred EEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
+.+++|+|++ +++ ++.|+.|++||+.+ ++... .+.+...+.+++|+|+++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-------------------------~~~~~--~~~~~~~v~~~~~spdg~ 86 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTAT-------------------------NNVIA--TVPAGSSPQGVAVSPDGK 86 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTT-------------------------TEEEE--EEECSSSEEEEEECTTSS
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCC-------------------------CeEEE--EEECCCCccceEECCCCC
Confidence 6889999997 333 44799999999987 55433 344445999999999999
Q ss_pred EEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEE-EEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYIL-SSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+|++++ .++.|++||+.+++.+..+..| ..+.+++|+ +..| ++++.++.|++||+.++ ..+..+..| ..+.++
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~ 163 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK-AVINTVSVG-RSPKGI 163 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECC-SSEEEE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEecC-CCcceE
Confidence 886554 6699999999999988888754 568999994 5655 78888999999999986 456666655 567999
Q ss_pred EEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+|+|++++| ++++.|+.|++||++++ +.+..+. +...+.+++|+|++..+++++.+..++.|++||+.+++.
T Consensus 164 ~~~~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 164 AVTPDGTKVYVANFDSMSISVIDTVTN------SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTT------EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEECCCC------eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 999999987 57778899999999987 5555554 556789999999997777665322589999999999999
Q ss_pred eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE---EEE------------EeCCC--
Q psy4876 504 LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL---NLA------------MSPDE-- 566 (609)
Q Consensus 504 ~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~---~l~------------~spdg-- 566 (609)
+..+..+..+.+++|+|++++++++ +..++.|++||+.+++.+..+..|..+.. .+. |+.+.
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~ 315 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVA-LSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITS 315 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEE-ETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCS
T ss_pred EEEEecCCCccEEEEccCCCEEEEE-cCCCCEEEEEECCCCcEEEEEECCcCCCccceeeeccccccccccccccccccc
Confidence 9999888889999999999988665 45799999999999999988877654421 122 22221
Q ss_pred --------CEEEEEECCCCEEEEEcCCCcc
Q psy4876 567 --------TTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 567 --------~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+...+.|..+++|++.++..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 316 GYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp SEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred ccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 2455667789999999977654
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=3.6e-24 Score=218.06 Aligned_cols=241 Identities=21% Similarity=0.390 Sum_probs=200.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
++.+|+||+++ +||+|. |++|+|||+.+++.+..+. +|...|.+++| ++++|++|+.||+|++||+.++ ..+.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-KRLR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCc-eeEE
Confidence 56789999886 787765 8999999999999888765 67788999999 5799999999999999999987 5788
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
.+.+|...+.++.+ ++.++++|+.++.+++|+..... ..+..+.+|...+..+.|++++. ++++++ .|+.
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~--~d~~ 173 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-----HHVATLSGHSQEVCGLRWAPDGR-HLASGG--NDNL 173 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-----CEEEEEECCSSCEEEEEECTTSS-EEEEEE--TTSC
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-----eeEEEEcCccCceEEEEEcCCCC-EEEEEe--cCcc
Confidence 89999998876555 56799999999999999988763 56678889999999999999885 555653 8999
Q ss_pred EEEEECCCCcee----EE-EcCCCCeEEEEEcCCCCeEE-EEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCC
Q psy4876 493 IYFWNVSSGACL----DS-IDTKSQVCALLWNSDYKELV-SAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDE 566 (609)
Q Consensus 493 I~iwd~~t~~~~----~~-~~~~~~v~sl~~s~~g~~l~-~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg 566 (609)
|++||+.+++.. .. ......|..+.+++++..++ +++|..++.|++||.......... .|...+..+.|+|++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~ 252 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHY 252 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeecccc
Confidence 999999987632 22 23456899999999876554 556778999999999988877665 467789999999999
Q ss_pred CEEEEEE--CCCCEEEEEcCCCccchh
Q psy4876 567 TTVLSAG--ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 567 ~~L~s~s--~Dg~I~iWdl~~~~~~~k 591 (609)
..+++++ .|+.|+|||+.++.....
T Consensus 253 ~~~~~~sg~~d~~i~iwd~~~~~~~~~ 279 (318)
T 4ggc_A 253 KELISGHGFAQNQLVIWKYPTMAKVAE 279 (318)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEE
T ss_pred cceEEEEEcCCCEEEEEECCCCcEEEE
Confidence 9888765 799999999998776543
No 125
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=9.2e-26 Score=239.59 Aligned_cols=225 Identities=12% Similarity=0.104 Sum_probs=165.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccccee---eeeeec-CCCCeEEEEEcc--------CCCE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAID---HLMDLE-GNENVCSVAWIQ--------EGYM 349 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~-h~~~V~~v~~sp--------dg~~ 349 (609)
+++++.|++|+|||+.. +... .+..+. |.+.|.+|+|+| ||++
T Consensus 104 las~~~d~~v~lw~~~~-------------------------~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKN-------------------------ETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp EEEEETTSCEEEEEEET-------------------------TEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred EEEEeCCCcEEEEECCC-------------------------CccceeeeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 55688899999999987 4332 233455 999999999998 7899
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecC---CEEEEEecCCeEEEEEcCCCCeeE---------------
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT---YILSSGSRCGNIVHHDVRSRDHKV--------------- 411 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~---~~L~sgs~dg~I~iwd~~~~~~~~--------------- 411 (609)
||+|+.|++|+|||+.++..+..+..|...|.+++|++ .+|++|+.||+|++||++++....
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999999999999999888888888999999999953 589999999999999998764211
Q ss_pred ---------EEEccCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEE----------
Q psy4876 412 ---------ALLQNHTQEVCGLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA---------- 471 (609)
Q Consensus 412 ---------~~~~~h~~~V~~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~---------- 471 (609)
....+|...|.++.|+ +||+.|++++.|+.+++||+..+. ....+..|...+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~ 312 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN------DYNEISDSTMKLGPKNLLPNVQGI 312 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCSEEEE
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC------CCceEeeecCccccEEEccccccc
Confidence 1124677889999987 799999999999999999998762 23333333333322
Q ss_pred --------EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 472 --------IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 472 --------l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
..|+|....+++++| +.|+.|++||+.+++++..+. ++..|.+++|+|+|++|++++ ++.+.+|.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~sg-s~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as---~~Gv~lvrL 387 (393)
T 4gq1_A 313 SLFPSLLGACPHPRYMDYFATAH-SQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT---EGSVLLTRL 387 (393)
T ss_dssp CSSCCSSCCEECSSCTTEEEEEE-TTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE---SSEEEEEEE
T ss_pred cccCcceeEEEccCCCCEEEEEE-CCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEE
Confidence 334443334444442 589999999999998776654 556999999999999999864 556777664
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7e-25 Score=234.69 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=211.5
Q ss_pred EEEEEecCCC--eE-EEE----cCC----eEEEEeC--CCCCCCceEEecCCccccccccccccccceeeeeeec-CCCC
Q psy4876 272 LNLIDWSHFN--VL-AVA----LGG----SIYLWNG--ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNEN 337 (609)
Q Consensus 272 v~~l~wsp~~--ll-a~s----~dg----~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~ 337 (609)
++..+|++.+ ++ +++ .+| .|+|||+ .+ ++...-..+. |...
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-------------------------~~~~~~~~~~~~~~~ 119 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-------------------------GTVLAQNSYKVNKQW 119 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-------------------------TCEEEEEEEEECGGG
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-------------------------CCEEeeeEEEcChhH
Confidence 5568898876 34 554 357 8999999 77 4432223344 6666
Q ss_pred eEEEEEcc--------------CCCEEEEEeCC------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 338 VCSVAWIQ--------------EGYMLGVGTSL------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 338 V~~v~~sp--------------dg~~Lasgs~d------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
+..+++++ .+..|+.++.+ +.|++||+. +...+.+.+|...|.+++| ++..|++++.
T Consensus 120 ~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~ 198 (415)
T 2hqs_A 120 LRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTF 198 (415)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEe
Confidence 77776664 15566666554 799999997 4567778889999999999 5789999988
Q ss_pred CC---eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE-EEeCCCc--EEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 396 CG---NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA-SGGNDNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 396 dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
++ .|++||+.++. ...+..|...+.+++|+|||++|+ +++.|+. |++||+.++ + ...+..|...+
T Consensus 199 ~~~~~~i~~~d~~tg~--~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~------~-~~~l~~~~~~~ 269 (415)
T 2hqs_A 199 ESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG------Q-IRQVTDGRSNN 269 (415)
T ss_dssp TTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC------C-EEECCCCSSCE
T ss_pred cCCCcEEEEEECCCCc--EEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC------C-EEeCcCCCCcc
Confidence 75 99999999874 345677888999999999999888 6666554 999999876 3 35677788899
Q ss_pred EEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCce
Q psy4876 470 KAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVK 546 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~ 546 (609)
.+++|+|+|..+++++. .++ .|++||+.+++..........+.+++|+|+|++|++++.. .+..|++||+.+++.
T Consensus 270 ~~~~~spdg~~l~~~s~--~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 270 TEPTWFPDSQNLAFTSD--QAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cceEECCCCCEEEEEEC--CCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 99999999976666652 344 7888899988754433344578899999999999987532 136899999998876
Q ss_pred EEEEeCCCCCEEEEEEeCCCCEEEEEECCC---CEEEEEcCCCc
Q psy4876 547 VAELHGHSARVLNLAMSPDETTVLSAGADE---TLRLWKIFEKV 587 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg---~I~iWdl~~~~ 587 (609)
. .+..|. .+.+++|+|||++|++++.|+ .|++||+.+..
T Consensus 348 ~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 348 Q-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp E-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred E-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc
Confidence 4 455554 899999999999999998887 79999987554
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=2.5e-23 Score=230.22 Aligned_cols=287 Identities=10% Similarity=0.060 Sum_probs=223.8
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeC--CCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc--
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNG--ESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ-- 345 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp-- 345 (609)
+..++|+|++ +++++.|+.|++||+ .+ +. .+.++.+...+..++|+|
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-------------------------~~--~~~~i~~g~~p~~va~sp~~ 233 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKE-------------------------PT--KVAEIKIGIEARSVESSKFK 233 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSS-------------------------CE--EEEEEECCSEEEEEEECCST
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCC-------------------------Cc--EEEEEecCCCcceEEeCCCc
Confidence 6789999997 677888999999999 55 33 344555567789999999
Q ss_pred --CCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC-----------CCceEEEEec---CCEEEEEecCCeEEEEEcCCCC
Q psy4876 346 --EGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH-----------DVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 346 --dg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h-----------~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
+|++|++++. ++.|.|||..+++.+..+..+ ...+..+.++ +.++++...++.|.+||+.+..
T Consensus 234 ~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 234 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 9999999884 899999999999998887652 2378888884 4577788889999999998754
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC----CcccEEEEEEcCCCCcEEE
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR----HQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~lla 483 (609)
........+...+.++.|+|+|++|++++ .+++|.+||+.++ +.+..+.. |.+....+ ++|++..+++
T Consensus 314 ~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg------~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 314 NLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR------RLSALVDVGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp SCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECSSSBCCTTCEEE-EETTTEEEEE
T ss_pred cceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC------eEEEeeccCCCCCCCCCccc-CCCCCccEEE
Confidence 32222224667788999999999877655 5899999999988 56665553 54433333 5787667888
Q ss_pred EEeccCCCeEEEEECCC-------CceeEEEcCCC-CeEEEEEcCCCCeEEEEE--ec---CCCeEEEEECCCCceE-EE
Q psy4876 484 SGGGTADRHIYFWNVSS-------GACLDSIDTKS-QVCALLWNSDYKELVSAH--GF---AQNQLIIWKYPSLVKV-AE 549 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t-------~~~~~~~~~~~-~v~sl~~s~~g~~l~~~s--G~---~dg~I~Iwd~~~~~~~-~~ 549 (609)
++. ..|++|.+||+.+ ++++.++..++ .+..+.++|++++|++.+ +. .+++|.|||+.+++.. ..
T Consensus 387 s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~ 465 (543)
T 1nir_A 387 TSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 465 (543)
T ss_dssp EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred ecc-CCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence 763 2589999999998 89999998764 678999999999999843 11 1679999999998877 44
Q ss_pred E--------eCCCCCEEEEEEeCCCCEEEEEE-----CCCCEEEEEcCCCccchhhh
Q psy4876 550 L--------HGHSARVLNLAMSPDETTVLSAG-----ADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 550 l--------~~h~~~V~~l~~spdg~~L~s~s-----~Dg~I~iWdl~~~~~~~k~~ 593 (609)
+ ..+..++.++.|+|||+.|+++. .|+.|.|||..+.+..+..+
T Consensus 466 ~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 466 LPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp ECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred eechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 3 35678899999999999888663 37999999999988765443
No 128
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1.2e-22 Score=208.77 Aligned_cols=274 Identities=11% Similarity=0.094 Sum_probs=204.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC-CCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS-LGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~-dg~I~ 360 (609)
+++.+.++.|++||..+ ++....... +...+ +++|+|+|++|++++. ++.|.
T Consensus 13 ~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDT-------------------------LEILNQITL-GYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp EEEEGGGTEEEEEETTT-------------------------CCEEEEEEC-CCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred EEEecCCCeEEEEeCcc-------------------------cceeeeEEc-cCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 44566789999999988 665544443 44556 9999999997776665 88999
Q ss_pred EEeCCCCee-EEEecCCCCceEEEEe--cCCEEEEEecCC---eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 361 LWDVSAKKK-CRTMDGHDVRVGALAW--NTYILSSGSRCG---NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 361 iwd~~~~~~-~~~l~~h~~~V~~l~~--~~~~L~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+||+.+++. ...+..+.....+++| ++.+|+++..++ .|.+||+.++ ..+..+.. ...+.+++|+|+|++|+
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~~~~~~~spdg~~l~ 143 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI-PYDAVGIAISPNGNGLI 143 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-CTTEEEEEECTTSSCEE
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC-CeEEEEEC-CCCccceEECCCCCEEE
Confidence 999999887 7777777666665888 577888555553 8999999886 45555553 45578999999998555
Q ss_pred E-EeCCCc-EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce---eEEEcC
Q psy4876 435 S-GGNDNL-LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC---LDSIDT 509 (609)
Q Consensus 435 s-gs~Dg~-I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~---~~~~~~ 509 (609)
+ +..++. |.+|++.......... ...+ .....+..++|+|++..+++++ ..++.|++||+.+++. +..+..
T Consensus 144 ~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~d~~~~~~~~~~~~~~~ 219 (331)
T 3u4y_A 144 LIDRSSANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNFAFVAN--LIGNSIGILETQNPENITLLNAVGT 219 (331)
T ss_dssp EEEETTTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSEEEEEE--TTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred EEecCCCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCEEEEEe--CCCCeEEEEECCCCcccceeeeccC
Confidence 4 455688 9999998642111001 1222 3445679999999998777776 3689999999999998 888888
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEEeCC----CCC---EEEEEEeCCCCEEEEEEC-CCCEE
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK--VAELHGH----SAR---VLNLAMSPDETTVLSAGA-DETLR 579 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~--~~~l~~h----~~~---V~~l~~spdg~~L~s~s~-Dg~I~ 579 (609)
...+..++|+|+|++++++. ..++.|.+||..+++. +..+..+ ... +..++|+|||++|++++. ++.|.
T Consensus 220 ~~~~~~~~~spdg~~l~v~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 298 (331)
T 3u4y_A 220 NNLPGTIVVSRDGSTVYVLT-ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELK 298 (331)
T ss_dssp SSCCCCEEECTTSSEEEEEC-SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEE
T ss_pred CCCCceEEECCCCCEEEEEE-cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEE
Confidence 88889999999999887764 3578899999998876 4444333 222 355899999998876665 56999
Q ss_pred EEEcCCCccc
Q psy4876 580 LWKIFEKVKS 589 (609)
Q Consensus 580 iWdl~~~~~~ 589 (609)
+||+......
T Consensus 299 v~d~~~~~~~ 308 (331)
T 3u4y_A 299 VFTISGKVVG 308 (331)
T ss_dssp EEETTSCEEE
T ss_pred EEEecCCccc
Confidence 9999876543
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=1.2e-22 Score=224.67 Aligned_cols=276 Identities=12% Similarity=0.131 Sum_probs=213.9
Q ss_pred ecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe
Q psy4876 277 WSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 277 wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs 354 (609)
++|++ +++.+.|++|.+||..+ +++...... + ..+.+++|+|+|++|++++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t-------------------------~~~~~~i~~-g-~~~~~v~~spdg~~l~v~~ 197 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDS-------------------------KKIVKVIDT-G-YAVHISRMSASGRYLLVIG 197 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTT-------------------------CCEEEEEEC-S-TTEEEEEECTTSCEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCC-------------------------ceEEEEEec-C-cccceEEECCCCCEEEEEC
Confidence 56766 44456689999999988 554433332 2 2388999999999999999
Q ss_pred CCCeEEEEeC--CCCeeEEEecCCCCceEEEEec------CCEEEEEe-cCCeEEEEEcCCCCeeEEEEcc---------
Q psy4876 355 SLGTVQLWDV--SAKKKCRTMDGHDVRVGALAWN------TYILSSGS-RCGNIVHHDVRSRDHKVALLQN--------- 416 (609)
Q Consensus 355 ~dg~I~iwd~--~~~~~~~~l~~h~~~V~~l~~~------~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~~--------- 416 (609)
.|+.|.+||+ .+++.+..+. +...+..++|+ +++|++++ .+++|.+||..+.. .+..+..
T Consensus 198 ~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 198 RDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQT 275 (543)
T ss_dssp TTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCC
T ss_pred CCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccc
Confidence 9999999999 8888888887 45567888885 57888877 48999999998874 5565553
Q ss_pred -C-CCCeEEEEEccCCCE-EEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeE
Q psy4876 417 -H-TQEVCGLKWSPDGRY-LASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHI 493 (609)
Q Consensus 417 -h-~~~V~~l~~spdg~~-lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I 493 (609)
| ...+.++.++|++.. +++...++.|.+||+.+.+. ..+..+ .+...+.+++|+|+++++++++. .+++|
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~----l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v 348 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN----LTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKV 348 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSS----CEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCc----ceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeE
Confidence 2 237899999997665 56667789999999987631 111233 35566788999999987877763 68999
Q ss_pred EEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEEeCCCCCEEEEE
Q psy4876 494 YFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-------LVKVAELHGHSARVLNLA 561 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~ 561 (609)
.+||+.+++++..+... .....+ ++|++..++++....+++|.|||+.+ ++.+..+.+|...+..++
T Consensus 349 ~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~ 427 (543)
T 1nir_A 349 AVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK 427 (543)
T ss_dssp EEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEE
T ss_pred EEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEE
Confidence 99999999999888742 122333 57875555544333689999999988 899999999999999999
Q ss_pred EeCCCCEEEEEE-------CCCCEEEEEcCCCccc
Q psy4876 562 MSPDETTVLSAG-------ADETLRLWKIFEKVKS 589 (609)
Q Consensus 562 ~spdg~~L~s~s-------~Dg~I~iWdl~~~~~~ 589 (609)
|+|||++|++++ .+++|.|||+.+.+..
T Consensus 428 ~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 428 THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 999999999987 3789999999988755
No 130
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=2.9e-23 Score=207.91 Aligned_cols=256 Identities=13% Similarity=0.135 Sum_probs=194.0
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeC
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDV 364 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~ 364 (609)
.+.++.|++||+.+ +....+.. |...|.+++|+|+|++|++++ ++.|.+||+
T Consensus 18 ~~~~~~i~~~d~~~-------------------------~~~~~~~~--~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~ 69 (297)
T 2ojh_A 18 GSMRSSIEIFNIRT-------------------------RKMRVVWQ--TPELFEAPNWSPDGKYLLLNS-EGLLYRLSL 69 (297)
T ss_dssp CCCCEEEEEEETTT-------------------------TEEEEEEE--ESSCCEEEEECTTSSEEEEEE-TTEEEEEES
T ss_pred CCcceeEEEEeCCC-------------------------Cceeeecc--CCcceEeeEECCCCCEEEEEc-CCeEEEEeC
Confidence 34678999999988 55544333 678999999999999999887 689999999
Q ss_pred CC-CeeEEEecCC-CCceEEEEe--cCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE-EEe
Q psy4876 365 SA-KKKCRTMDGH-DVRVGALAW--NTYILSSGS--RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA-SGG 437 (609)
Q Consensus 365 ~~-~~~~~~l~~h-~~~V~~l~~--~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-sgs 437 (609)
.+ ++.......+ ...+.+++| ++..|++++ .++.+.+|.++........+..+. .+..++|+|+|++|+ +++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~ 148 (297)
T 2ojh_A 70 AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGI 148 (297)
T ss_dssp SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEE
T ss_pred CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEEC
Confidence 99 8777777666 367888999 578898888 334555554432222344444443 489999999999887 777
Q ss_pred CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEE
Q psy4876 438 NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCA 515 (609)
Q Consensus 438 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~s 515 (609)
.|+.+.||+++... .....+..+...+.+++|+|++..+++++ ..++.+++|++. .+..+..+..+ ..+..
T Consensus 149 ~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 149 RDQVFDIYSMDIDS-----GVETRLTHGEGRNDGPDYSPDGRWIYFNS--SRTGQMQIWRVRVDGSSVERITDSAYGDWF 221 (297)
T ss_dssp ETTEEEEEEEETTT-----CCEEECCCSSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred CCCceEEEEEECCC-----CcceEcccCCCccccceECCCCCEEEEEe--cCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence 89999999864321 34456677888999999999997776665 358889999886 45555555544 47889
Q ss_pred EEEcCCCCeEEEEEec---------CCCeEEEEECCCCce--EEEEeCCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 516 LLWNSDYKELVSAHGF---------AQNQLIIWKYPSLVK--VAELHGHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 516 l~~s~~g~~l~~~sG~---------~dg~I~Iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
+.|+|++++|++++.. .++.|++||+.+++. +..+.+|...+.+++|+|||++|++++.|.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 9999999999887543 126799999988765 445557888999999999999999888764
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=1.4e-22 Score=208.35 Aligned_cols=266 Identities=12% Similarity=0.169 Sum_probs=194.1
Q ss_pred EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC-CeEEEEe
Q psy4876 285 VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL-GTVQLWD 363 (609)
Q Consensus 285 ~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d-g~I~iwd 363 (609)
.+.++.|++|++... +....+..+.+...+.+++|+|+|++|++++.+ +.|.+|+
T Consensus 11 ~~~~~~v~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 11 SPESQQIHVWNLNHE------------------------GALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp EGGGTEEEEEEECTT------------------------SCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCCeEEEEEECCC------------------------CcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEE
Confidence 356899999998631 444555555577889999999999999988886 9999999
Q ss_pred CC--CCe--eEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCC--eeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 364 VS--AKK--KCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRD--HKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 364 ~~--~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+. +++ .+..+..+. .+..++| ++..|++++ .++.|.+||+..+. .....+.. ...+.+++|+|+|++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 67 IAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLW 144 (343)
T ss_dssp ECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEE
T ss_pred ecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEE
Confidence 97 444 344555444 7888999 467666655 58899999995221 23344443 34688999999999888
Q ss_pred EEe-CCCcEEEEeCCC-CCCCCCccceE--eecC-CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--Cce--eE
Q psy4876 435 SGG-NDNLLNIWSGVP-GQHTFSTQPIH--SLSR-HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GAC--LD 505 (609)
Q Consensus 435 sgs-~Dg~I~iwd~~~-~~~~~~~~~~~--~~~~-h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~--~~ 505 (609)
+++ .++.|++||+.. +.. ..+. .+.. ....+.+++|+|++..+++++ ..++.|.+||+.. ++. ..
T Consensus 145 ~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~--~~~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 145 VPALKQDRICLFTVSDDGHL----VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN--ELNSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp EEEGGGTEEEEEEECTTSCE----EEEEEEEEECSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEESSCTTSCCEEEE
T ss_pred EecCCCCEEEEEEecCCCce----eeecccccccCCCCCcceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCcEEEEe
Confidence 887 889999999986 421 1111 2222 344788999999998777775 3789999999953 433 22
Q ss_pred EEc---C----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceEEEEeCCCCCEEEEEEeCCCCEEEEEE-
Q psy4876 506 SID---T----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP----SLVKVAELHGHSARVLNLAMSPDETTVLSAG- 573 (609)
Q Consensus 506 ~~~---~----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s- 573 (609)
.+. . ...+..++|+|++++++++ +..++.|.+||+. ..+.+..+..+.. +.+++|+|+|++|++++
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~ 296 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQ 296 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECT
T ss_pred eccccCccccccCCccceEECCCCCEEEEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecC
Confidence 222 1 1256789999999988865 3478999999998 3345555655544 88999999999988887
Q ss_pred CCCCEEEEEcC
Q psy4876 574 ADETLRLWKIF 584 (609)
Q Consensus 574 ~Dg~I~iWdl~ 584 (609)
.|+.|.+|++.
T Consensus 297 ~~~~v~v~~~d 307 (343)
T 1ri6_A 297 KSHHISVYEIV 307 (343)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCeEEEEEEc
Confidence 58999999665
No 132
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=6.5e-23 Score=234.98 Aligned_cols=277 Identities=14% Similarity=0.078 Sum_probs=207.2
Q ss_pred eEEEEEecCCC--eEEEEc-CC-----eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC------
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GG-----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN------ 335 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg-----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~------ 335 (609)
.+..++||||| +++++. |+ .|++||+.+ +....+.... +.
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~~ 92 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-------------------------GQTRLLVDSKVVLPGTETL 92 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-------------------------CCEEEEECGGGTC------
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-------------------------CceeEccchhhcccccccc
Confidence 47789999997 555666 77 899999988 3333333222 11
Q ss_pred ----------------CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 336 ----------------ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 336 ----------------~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
..|.+++|+|||++|++++. +.|.+||+.++. ....+..|...+..++| +|+.|+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~- 170 (741)
T 2ecf_A 93 SDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR- 170 (741)
T ss_dssp --------------CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-
T ss_pred cchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-
Confidence 34889999999999999887 999999999873 45567778889999999 678888887
Q ss_pred CCeEEEEEcCCCCeeEEEEccCCCC----------------eEEEEEccCCCEEEEEeCCC-------------------
Q psy4876 396 CGNIVHHDVRSRDHKVALLQNHTQE----------------VCGLKWSPDGRYLASGGNDN------------------- 440 (609)
Q Consensus 396 dg~I~iwd~~~~~~~~~~~~~h~~~----------------V~~l~~spdg~~lasgs~Dg------------------- 440 (609)
++.|++||+.++. .......+... +.+++|+|||++|++++.|+
T Consensus 171 ~~~i~~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 171 GRNLWVIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVI 249 (741)
T ss_dssp TTEEEEEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEE
T ss_pred CCcEEEEecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccce
Confidence 4699999998863 33333333332 47799999999999998765
Q ss_pred --------------cEEEEeCCC-CCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEe--ccCCCeEEEEECCCC
Q psy4876 441 --------------LLNIWSGVP-GQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGG--GTADRHIYFWNVSSG 501 (609)
Q Consensus 441 --------------~I~iwd~~~-~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasgg--Gs~Dg~I~iwd~~t~ 501 (609)
.|++||+.+ + +...... .|...+..++| |+|..+++++. +..+..|++||+.++
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~------~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQA------QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTC------CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred EeecCCCCCCCCeeEEEEEECCCCC------ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 789999987 6 3322222 47788999999 99987776542 234688999999999
Q ss_pred ceeEEEcCCC-----CeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEEE-EEeCCCCEEEEE-E
Q psy4876 502 ACLDSIDTKS-----QVCALLWNSDYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLNL-AMSPDETTVLSA-G 573 (609)
Q Consensus 502 ~~~~~~~~~~-----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l-~~spdg~~L~s~-s 573 (609)
++...+..+. .+..++|+|+|+.+++ +..++.+.||.+. .+. ...+..|...|..+ .|+|||+.|+.. +
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 8877665433 3568999999996655 4478877777765 344 77778888888887 599999977654 4
Q ss_pred CCC--CEEEEEcCC
Q psy4876 574 ADE--TLRLWKIFE 585 (609)
Q Consensus 574 ~Dg--~I~iWdl~~ 585 (609)
.|+ .++||++..
T Consensus 400 ~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 400 IESARESQIYAVPL 413 (741)
T ss_dssp SSCTTCBEEEEEET
T ss_pred CCCCceEEEEEEEc
Confidence 455 899999864
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.9e-21 Score=201.16 Aligned_cols=266 Identities=15% Similarity=0.117 Sum_probs=209.0
Q ss_pred EEEEEecCCC-eEEEEc--------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 272 LNLIDWSHFN-VLAVAL--------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~--------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+..++|+|++ .+.++. ++.|++||..+ ++...... ....+.+++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-------------------------~~~~~~~~--~~~~~~~~~ 95 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-------------------------LEVTQAIH--NDLKPFGAT 95 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-------------------------CCEEEEEE--ESSCCCSEE
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-------------------------CeEEEEEe--cCCCcceEE
Confidence 5679999986 444333 56899999988 55433333 334578899
Q ss_pred EccCCCEEEEE-eCCCeEEEEeCCCCeeEEEecCCCCc---------eEEEEe--cCCEEEEEe--cCCeEEEEEcCCCC
Q psy4876 343 WIQEGYMLGVG-TSLGTVQLWDVSAKKKCRTMDGHDVR---------VGALAW--NTYILSSGS--RCGNIVHHDVRSRD 408 (609)
Q Consensus 343 ~spdg~~Lasg-s~dg~I~iwd~~~~~~~~~l~~h~~~---------V~~l~~--~~~~L~sgs--~dg~I~iwd~~~~~ 408 (609)
|+|+|++++++ ..++.|.+||..+++.+..+..+... +.+++| +++.+++++ .++.|.+||..++
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~- 174 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI- 174 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT-
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC-
Confidence 99999866555 45799999999999988888765432 678888 567666665 4789999999986
Q ss_pred eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----CcccEEEEEEcCCCCcEEEE
Q psy4876 409 HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----HQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~l~~sp~~~~llas 484 (609)
..+..+..+...+.+++|+|+|++|++++.++.|.+||+.++ +.+..+.. +...+.+++|+|++..++++
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN------KILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT------EEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC------eEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 466666656667889999999999999999999999999987 45544443 45568899999999877776
Q ss_pred EeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 485 GGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
. ..++.|.+||+.+++.+..+..... ..++|++++++++++. ..++.|.+||..+++.+..+..+ ..+.+++|+|
T Consensus 249 ~--~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~-~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~ 323 (353)
T 3vgz_A 249 D--SKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTH-RQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSA 323 (353)
T ss_dssp E--SSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEE-TTTTEEEEEETTTTEEEEEEECC-SEEEEEEECT
T ss_pred e--CCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEE-CCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcC
Confidence 5 3679999999999999888876554 5799999999877753 46899999999999988887654 4689999999
Q ss_pred CCCEEEEEECCC
Q psy4876 565 DETTVLSAGADE 576 (609)
Q Consensus 565 dg~~L~s~s~Dg 576 (609)
||++|+++..++
T Consensus 324 dg~~l~v~~~~~ 335 (353)
T 3vgz_A 324 DGKTLYVSVKQK 335 (353)
T ss_dssp TSCEEEEEEECC
T ss_pred CCCEEEEEEccc
Confidence 999887776653
No 134
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=6.9e-22 Score=211.41 Aligned_cols=239 Identities=13% Similarity=0.063 Sum_probs=188.9
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEeCC
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLG---TVQLWDVS 365 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg---~I~iwd~~ 365 (609)
+.|++||+.. +....+.. |...|.+++|+|+|++||+++.++ .|++||+.
T Consensus 159 ~~i~i~d~~g-------------------------~~~~~l~~--~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 159 YELRVSDYDG-------------------------YNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp EEEEEEETTS-------------------------CSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred ceEEEEcCCC-------------------------CCCEEEeC--CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence 7999999976 44333322 778999999999999999999875 99999999
Q ss_pred CCeeEEEecCCCCceEEEEe--cCCEEE-EEecCCe--EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC-
Q psy4876 366 AKKKCRTMDGHDVRVGALAW--NTYILS-SGSRCGN--IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND- 439 (609)
Q Consensus 366 ~~~~~~~l~~h~~~V~~l~~--~~~~L~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D- 439 (609)
+++.. .+..|...+.+++| ++..|+ +++.+|. |++||+.++. ...+..|...+.+++|+|||++|++++.+
T Consensus 212 tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~ 288 (415)
T 2hqs_A 212 NGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA 288 (415)
T ss_dssp TCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTT
T ss_pred CCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCC
Confidence 88765 56678889999999 567666 6666654 9999998763 46777888999999999999999988864
Q ss_pred C--cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEE
Q psy4876 440 N--LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALL 517 (609)
Q Consensus 440 g--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~ 517 (609)
+ .|++||+.++ + ...+..+...+.+++|+|+|..+++++....+..|++||+.+++.. .+..+..+.+++
T Consensus 289 g~~~i~~~d~~~~------~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~ 360 (415)
T 2hqs_A 289 GRPQVYKVNINGG------A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTFLDETPS 360 (415)
T ss_dssp SSCEEEEEETTSS------C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSSSCEEEE
T ss_pred CCcEEEEEECCCC------C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCCCcCCeE
Confidence 4 6888898876 2 3445567778999999999976666553112468999999998874 444445899999
Q ss_pred EcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 518 WNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
|+|+|+.|++++. .++ .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus 361 ~spdg~~l~~~s~-~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 361 LAPNGTMVIYSSS-QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ECTTSSEEEEEEE-ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred EcCCCCEEEEEEc-CCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 9999999988653 233 79999986 556778889999999999999643
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=4.1e-23 Score=235.79 Aligned_cols=280 Identities=12% Similarity=0.159 Sum_probs=202.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC---CeEEEEEccCC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE---NVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~---~V~~v~~spdg 347 (609)
...++|+||+ +++.+.|+.|++||+.+ +....+... +.. .|.+++|+|||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~-------------------------g~~~~~~~~-~~~~~~~v~~~~~SpDg 72 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVET-------------------------NTSTVLIEG-KKIESLRAIRYEISPDR 72 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGG-------------------------CCCEEEECT-TTTTTTTCSEEEECTTS
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCC-------------------------CcEEEEecc-ccccccccceEEECCCC
Confidence 4568999997 66667899999999988 555444332 332 49999999999
Q ss_pred CEEEEEeCC---------CeEEEEeCCCCeeEEEec---CCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 348 YMLGVGTSL---------GTVQLWDVSAKKKCRTMD---GHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 348 ~~Lasgs~d---------g~I~iwd~~~~~~~~~l~---~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
++||+++.+ +.|.+||+.+++. ..+. +|...+..++| +|+.|+.++. +.|++||+.++. ....
T Consensus 73 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~ 149 (723)
T 1xfd_A 73 EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRV 149 (723)
T ss_dssp SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEE
T ss_pred CEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEE
Confidence 999999874 7889999998876 3343 34555888889 5788888876 799999998864 4444
Q ss_pred EccCCCCe------------------EEEEEccCCCEEEEEeCCC----------------------------------c
Q psy4876 414 LQNHTQEV------------------CGLKWSPDGRYLASGGNDN----------------------------------L 441 (609)
Q Consensus 414 ~~~h~~~V------------------~~l~~spdg~~lasgs~Dg----------------------------------~ 441 (609)
...+...+ .+++|+|||++|++++.|+ .
T Consensus 150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 44433333 7899999999999987653 7
Q ss_pred EEEEeCCCCCCCCCccceEeecCC------cccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCceeEEEcCC--CC
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSRH------QAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGACLDSIDTK--SQ 512 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~h------~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~~~~~~~~~--~~ 512 (609)
|++||+.++ .....+..+ ...+..++|+|||..+++... +..+..|++||+.++++...+..+ ..
T Consensus 230 l~~~d~~~~------~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 303 (723)
T 1xfd_A 230 LHVIGLNGP------THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAW 303 (723)
T ss_dssp EEEEESSSS------CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred EEEEECCCC------ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCE
Confidence 999999877 333444433 677899999999975434321 123578999999999877665422 22
Q ss_pred e----EEEEEcCCCCeEEEEEecCCC------eEEEEE-CCCCc--eEEEEeCCCCCEEE-EEEeCCCCEEEEEECC---
Q psy4876 513 V----CALLWNSDYKELVSAHGFAQN------QLIIWK-YPSLV--KVAELHGHSARVLN-LAMSPDETTVLSAGAD--- 575 (609)
Q Consensus 513 v----~sl~~s~~g~~l~~~sG~~dg------~I~Iwd-~~~~~--~~~~l~~h~~~V~~-l~~spdg~~L~s~s~D--- 575 (609)
+ ..++|+|+|+.|+.+++..++ .|.+|| ...+. +...+..+...+.. ++|+|||+.|+..+.+
T Consensus 304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 383 (723)
T 1xfd_A 304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP 383 (723)
T ss_dssp CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence 3 378999999998876444666 577777 34443 14445443444554 6999999999877665
Q ss_pred CCEEEEEcCCC
Q psy4876 576 ETLRLWKIFEK 586 (609)
Q Consensus 576 g~I~iWdl~~~ 586 (609)
+.++||++...
T Consensus 384 ~~~~l~~~~~~ 394 (723)
T 1xfd_A 384 RRRQLYSANTV 394 (723)
T ss_dssp TCCEEEEECSS
T ss_pred cceEEEEEeCC
Confidence 78999999754
No 136
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.90 E-value=6e-22 Score=202.43 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=140.7
Q ss_pred cCCCEEEEEe--CCCeEEEEeC-CCCeeEEEecCCCCceEEEEe-----cCCEEEEEecCCeEEEEEcCCCCeeEEEEcc
Q psy4876 345 QEGYMLGVGT--SLGTVQLWDV-SAKKKCRTMDGHDVRVGALAW-----NTYILSSGSRCGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 345 pdg~~Lasgs--~dg~I~iwd~-~~~~~~~~l~~h~~~V~~l~~-----~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~ 416 (609)
++|+++.++. .|+.|++|++ .+++.+..+.+|...+..++| ++.+|++|+.|++|++||+.++ +.+.++.+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g 221 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHI 221 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEEC
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcC
Confidence 4555555543 5889999999 457888888888888877777 3589999999999999999997 47777876
Q ss_pred CC---CCeEEEEEccCCCEE------------EEEeCCCcEEEEeCCCCCCCCCccceEee-----cCCcccEEEEEEcC
Q psy4876 417 HT---QEVCGLKWSPDGRYL------------ASGGNDNLLNIWSGVPGQHTFSTQPIHSL-----SRHQAAVKAIAWCP 476 (609)
Q Consensus 417 h~---~~V~~l~~spdg~~l------------asgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~sp 476 (609)
|. ..+++++|+|+|.++ ++|+.|++|++||..++ ..+..+ .+|...+.+..++
T Consensus 222 ~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg------k~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 222 DDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT------LSVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp CC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT------EEEEEEEECCCTTCCCCEEEEEEE-
T ss_pred CCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC------EEEEEEEeeccCCCcceeEccccC-
Confidence 54 467888999999886 56888999999999987 444433 3565555544444
Q ss_pred CCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC-C-eEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS-Q-VCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~-~-v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
+ .++++| +.|++|+|||+.+++++.++..+. . +..++|+|+|++|++ |+.|++|+|||+
T Consensus 295 -g-~~lASg--S~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 295 -D-HCAAAI--LTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp -T-TEEEEE--ETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred -C-CEEEEE--cCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 3 467776 489999999999999999998664 4 446899999999998 569999999995
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.89 E-value=3.5e-21 Score=197.30 Aligned_cols=269 Identities=13% Similarity=0.071 Sum_probs=202.0
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC-CeEEEEEccCCCEEEE-EeCCCeE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE-NVCSVAWIQEGYMLGV-GTSLGTV 359 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~-~V~~v~~spdg~~Las-gs~dg~I 359 (609)
+++++.++.|++||..+ ++......+.+.. .+.+++|+|+|+++++ +..++.|
T Consensus 4 ~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v 58 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEK-------------------------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58 (337)
T ss_dssp EEEEETTTEEEEEETTT-------------------------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEE
T ss_pred EEEcCCCCeEEEEECCC-------------------------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeE
Confidence 56788899999999987 5544333332222 5889999999977654 5557899
Q ss_pred EEEeCCCCeeEEEecC-C----CCceEEEEe--cCCEEEEEe------------cCCeEEEEEcCCCCeeEEEEccCCCC
Q psy4876 360 QLWDVSAKKKCRTMDG-H----DVRVGALAW--NTYILSSGS------------RCGNIVHHDVRSRDHKVALLQNHTQE 420 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~-h----~~~V~~l~~--~~~~L~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~ 420 (609)
.+||+.+++.+..+.. + ...+..++| ++..|++++ .++.|.+||+.++ ..+..+.. ...
T Consensus 59 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~-~~~ 136 (337)
T 1pby_B 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-SRRKAFEA-PRQ 136 (337)
T ss_dssp EEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT-EEEEEEEC-CSS
T ss_pred EEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC-cEEEEEeC-CCC
Confidence 9999999988877653 2 125667888 477888776 5799999999876 34555543 456
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC---------
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--------- 491 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--------- 491 (609)
+.+++|+|+|++|+++ ++.|++||+.++ +.+..+..+.. ...+.|+|++..+++++. .++
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~------~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~ 205 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAG------TLVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTA 205 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTT------EEEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEE
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCC------cEeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeecc
Confidence 7889999999988887 689999999987 45555543331 112378999877766542 233
Q ss_pred --------------eEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 492 --------------HIYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 492 --------------~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
.|.+||+.+++.. .+. ....+.+++|+|++++++++ ++.|.+||+.+++.+..+..+
T Consensus 206 ~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~- 279 (337)
T 1pby_B 206 RKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA----YNVLESFDLEKNASIKRVPLP- 279 (337)
T ss_dssp BTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE----ESEEEEEETTTTEEEEEEECS-
T ss_pred ccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe----CCeEEEEECCCCcCcceecCC-
Confidence 5799999998875 332 23478899999999999884 689999999999888877643
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..+.+++|+|||++|++++.|+.|++||+.+++.......
T Consensus 280 ~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 280 HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 4678999999999999999999999999998876554433
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=1.4e-21 Score=222.80 Aligned_cols=277 Identities=11% Similarity=0.106 Sum_probs=206.7
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..|..++|||++.++.+.++.|++||+.+ +....+.. +...+.+++|+|||++
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~-------------------------~~~~~l~~--~~~~~~~~~~SpdG~~ 134 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLA-------------------------RKVTYLFD--TNEETASLDFSPVGDR 134 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTT-------------------------TEEEEEEC--CTTCCTTCEECTTSSE
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCC-------------------------CceEEccC--CcccccCCcCCCCCCE
Confidence 35788999999977777889999999987 55443332 5667889999999999
Q ss_pred EEEEeCCCeEEEEeCCC-----CeeEEEecCCCCc--------------eEEEEe--cCCEEEEEe--------------
Q psy4876 350 LGVGTSLGTVQLWDVSA-----KKKCRTMDGHDVR--------------VGALAW--NTYILSSGS-------------- 394 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~-----~~~~~~l~~h~~~--------------V~~l~~--~~~~L~sgs-------------- 394 (609)
||++ .++.|.+||+.+ ++.......+... +.++.| +++.|++++
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~ 213 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY 213 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence 9985 679999999998 7766655544443 478889 678888887
Q ss_pred -------------------cCCeEEEEEcCCCCeeEEEE--ccCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCC
Q psy4876 395 -------------------RCGNIVHHDVRSRDHKVALL--QNHTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGV 448 (609)
Q Consensus 395 -------------------~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~ 448 (609)
.+..|.+||+.++. ..... ..|...+.+++|+|||++|++++.++ .|++||+.
T Consensus 214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~ 292 (706)
T 2z3z_A 214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK-TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE 292 (706)
T ss_dssp CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE-EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT
T ss_pred CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc-eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC
Confidence 44679999998864 22222 24667899999999999999988775 89999998
Q ss_pred CCCCCCCccceEeec--CCcc---cEEEEEEcC--CCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEE-EEE
Q psy4876 449 PGQHTFSTQPIHSLS--RHQA---AVKAIAWCP--WSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCA-LLW 518 (609)
Q Consensus 449 ~~~~~~~~~~~~~~~--~h~~---~V~~l~~sp--~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~s-l~~ 518 (609)
++. ....+. .+.. .+.+++|+| +|. +++++ ..|+.+++|++. ++..+..+..+ ..+.. ++|
T Consensus 293 ~g~------~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~--~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~ 363 (706)
T 2z3z_A 293 TGR------FVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQS--RRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGF 363 (706)
T ss_dssp TCC------EEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEE--CTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEE
T ss_pred CCc------eeeEEEEccCCCeECccCCceeecCCCCE-EEEEE--ccCCccEEEEEECCCCEEEecCCCCeEEEeeeEE
Confidence 872 222221 1222 246789999 886 55555 378888888876 66677776554 35666 799
Q ss_pred cCCCCeEEEEEecCCC----eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCCc
Q psy4876 519 NSDYKELVSAHGFAQN----QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEKV 587 (609)
Q Consensus 519 s~~g~~l~~~sG~~dg----~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~~ 587 (609)
+|+++.|++++. .++ .|..||..++. +..+ .|...+.+++|+|||++|+.++.+ +.|++||+.++.
T Consensus 364 spdg~~l~~~~~-~~~~~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 364 DPKGTRLYFEST-EASPLERHFYCIDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTSSEEEEEES-SSCTTCBEEEEEETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred cCCCCEEEEEec-CCCCceEEEEEEEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 999999887654 343 77788887765 3334 367789999999999988876554 459999998765
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=2e-20 Score=193.89 Aligned_cols=253 Identities=14% Similarity=0.165 Sum_probs=181.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCe--eEEEecCCCCceEEEEe--cCCEEEEEe-c
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKK--KCRTMDGHDVRVGALAW--NTYILSSGS-R 395 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~--~~~~L~sgs-~ 395 (609)
+....+....+...+..++|+|+|+ |++++. ++.|.+||+.+++ .+..+..+...+..++| ++++|++++ .
T Consensus 28 g~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~ 106 (347)
T 3hfq_A 28 KTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYH 106 (347)
T ss_dssp TEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETT
T ss_pred CeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCC
Confidence 4555544444567788999999999 555544 6899999997765 44455557778888888 577787777 7
Q ss_pred CCeEEEEEcCCCCe--eEEEEcc---------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCCCCCCccceEeec
Q psy4876 396 CGNIVHHDVRSRDH--KVALLQN---------HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV-PGQHTFSTQPIHSLS 463 (609)
Q Consensus 396 dg~I~iwd~~~~~~--~~~~~~~---------h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~ 463 (609)
++.|.+|++..... .+..+.. +...+.+++|+|+|+++++...++.|++||+. .+.. ..+..+.
T Consensus 107 ~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~----~~~~~~~ 182 (347)
T 3hfq_A 107 KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL----SEQSVLT 182 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE----EEEEEEE
T ss_pred CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE----EEeeeEE
Confidence 89999999964321 2222221 12348899999999966666678899999998 3311 1222222
Q ss_pred CC-cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC--Cce--eEEEcCC-------CCeEEEEEcCCCCeEEEEEec
Q psy4876 464 RH-QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS--GAC--LDSIDTK-------SQVCALLWNSDYKELVSAHGF 531 (609)
Q Consensus 464 ~h-~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t--~~~--~~~~~~~-------~~v~sl~~s~~g~~l~~~sG~ 531 (609)
.+ ...+..++|+|+|..+++++ ..++.|.+|++.. ++. +..+... ..+..++|+|+|++|+++. .
T Consensus 183 ~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~-~ 259 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN-R 259 (347)
T ss_dssp CCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE-E
T ss_pred cCCCCCCceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe-C
Confidence 22 23678899999998777765 3689999999874 543 2222221 3588999999999887653 3
Q ss_pred CCCeEEEEECC---CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-CCEEEEEcC
Q psy4876 532 AQNQLIIWKYP---SLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-ETLRLWKIF 584 (609)
Q Consensus 532 ~dg~I~Iwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-g~I~iWdl~ 584 (609)
.++.|.+|++. ..+.+..+..+...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 260 ~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 68999999987 335566667777778999999999999888865 899999664
No 140
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.4e-20 Score=189.62 Aligned_cols=264 Identities=11% Similarity=0.078 Sum_probs=184.4
Q ss_pred EEEEEecCCC--eEEEEcC-CeEEEEeCC--CCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN--VLAVALG-GSIYLWNGE--SDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~d-g~I~iWd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
+..++|+|++ +++++.+ +.|.+|++. + +....+..+.....+.+++|+|+
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~s~d 94 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------------------------GALTFAAESALPGSLTHISTDHQ 94 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------------------------CCEEEEEEEECSSCCSEEEECTT
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCC-------------------------CceeeccccccCCCCcEEEEcCC
Confidence 5669999986 5556665 899999997 4 55555555553448899999999
Q ss_pred CCEEEEEeC-CCeEEEEeCC---CCeeEEEecCCCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCCCCeeEE----EEc
Q psy4876 347 GYMLGVGTS-LGTVQLWDVS---AKKKCRTMDGHDVRVGALAW--NTYILSSGS-RCGNIVHHDVRSRDHKVA----LLQ 415 (609)
Q Consensus 347 g~~Lasgs~-dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~~~~~~~----~~~ 415 (609)
|++|++++. ++.|.+||+. ..+.+..+..+ ..+.+++| ++..|++++ .++.|.+||+........ .+.
T Consensus 95 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 95 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 998877665 8899999994 34455555544 45788888 466777776 899999999987322221 222
Q ss_pred -cCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeec---CC---cccEEEEEEcCCCCcEEEEEec
Q psy4876 416 -NHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLS---RH---QAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 416 -~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h---~~~V~~l~~sp~~~~llasggG 487 (609)
.....+.+++|+|+|+++++++ .++.|.+||+...... ......+. .. ...+.+++|+|++..+++++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~-- 249 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGN--IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD-- 249 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSC--CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE--
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--EEEEeeccccCccccccCCccceEECCCCCEEEEEe--
Confidence 2345788999999999776555 7899999999642110 01122221 11 33577899999998777766
Q ss_pred cCCCeEEEEECC--C--CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCc--eEEEEeCCCCCEEE
Q psy4876 488 TADRHIYFWNVS--S--GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PSLV--KVAELHGHSARVLN 559 (609)
Q Consensus 488 s~Dg~I~iwd~~--t--~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~~~--~~~~l~~h~~~V~~ 559 (609)
..++.|.+||+. + .+.+..+.....+..++|+|++++|+++. ..++.|.+|++ .+++ .+..+... ....+
T Consensus 250 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~ 327 (343)
T 1ri6_A 250 RTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAG-QKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMW 327 (343)
T ss_dssp TTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEEC-TTTCEEEEEEEETTTTEEEEEEEEECS-SSCCE
T ss_pred cCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEec-CCCCeEEEEEEcCCCceeeEccccccC-CCCee
Confidence 368999999998 3 34555566556689999999999988853 36899999954 4553 34444432 44667
Q ss_pred EEEeCCCC
Q psy4876 560 LAMSPDET 567 (609)
Q Consensus 560 l~~spdg~ 567 (609)
++|.++.+
T Consensus 328 i~~~~~~~ 335 (343)
T 1ri6_A 328 VVVNAHEG 335 (343)
T ss_dssp EEEEEEC-
T ss_pred EEEEcccC
Confidence 78877543
No 141
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=2e-19 Score=187.56 Aligned_cols=256 Identities=11% Similarity=0.098 Sum_probs=180.5
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEeCC----CeEEEEeCCC--Ce--eEEEecCCCCceEEEEecCCEEEEEe-
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL----GTVQLWDVSA--KK--KCRTMDGHDVRVGALAWNTYILSSGS- 394 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d----g~I~iwd~~~--~~--~~~~l~~h~~~V~~l~~~~~~L~sgs- 394 (609)
+....+... +...+..++|+|+|++|++++.+ +.|.+|++.. ++ .+.....+......+++++.+|++++
T Consensus 39 g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~ 117 (361)
T 3scy_A 39 GESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANY 117 (361)
T ss_dssp CCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEET
T ss_pred CCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEEC
Confidence 555555555 67788899999999999998886 7999998865 43 33444446667788888888777766
Q ss_pred cCCeEEEEEcCCCCee---EEEE--cc--------CCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCC--C-cc
Q psy4876 395 RCGNIVHHDVRSRDHK---VALL--QN--------HTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTF--S-TQ 457 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~---~~~~--~~--------h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~--~-~~ 457 (609)
.++.|.+|++...... .... .+ +...+.+++|+|+|++|++++ .++.|.+|++....... . ..
T Consensus 118 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~ 197 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFL 197 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCE
T ss_pred CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccccccee
Confidence 5789999999754321 1111 11 223468899999999776655 47899999987652100 0 00
Q ss_pred c----eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce--eEEEcC----CCCeEEEEEcCCCCeEEE
Q psy4876 458 P----IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC--LDSIDT----KSQVCALLWNSDYKELVS 527 (609)
Q Consensus 458 ~----~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~--~~~~~~----~~~v~sl~~s~~g~~l~~ 527 (609)
. ......+...+..++|+|+++.+++++ ..++.|.+||+.+++. +..+.. ......++|+|+|++|++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~--~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v 275 (361)
T 3scy_A 198 TKGTPEAFKVAPGSGPRHLIFNSDGKFAYLIN--EIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYA 275 (361)
T ss_dssp EEEEEEEEECCTTCCEEEEEECTTSSEEEEEE--TTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEE
T ss_pred ecccccceecCCCCCCeEEEEcCCCCEEEEEc--CCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEE
Confidence 0 111223445678999999998777765 3689999999987754 233322 235789999999999987
Q ss_pred EEecC-CCeEEEEECC--CCc--eEEEEeCCCCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcC
Q psy4876 528 AHGFA-QNQLIIWKYP--SLV--KVAELHGHSARVLNLAMSPDETTVLSAG-ADETLRLWKIF 584 (609)
Q Consensus 528 ~sG~~-dg~I~Iwd~~--~~~--~~~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~ 584 (609)
+.. . ++.|.+|++. ++. .+..+.. ...+.+++|+|||++|++++ .++.|.+|++.
T Consensus 276 ~~~-~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 276 SNR-LKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEC-SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ECC-CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 643 4 6899999985 344 4445554 55788999999999998888 57899997665
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.1e-20 Score=216.37 Aligned_cols=274 Identities=11% Similarity=0.108 Sum_probs=201.2
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCcccccccccccccc---ceeeeeeecCCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR---AIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~h~~~V~~v~~spd 346 (609)
.+..++||||+ .|+.+.++.|++||+.+ + ....+.. +...+.+++|+||
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~-------------------------~~~~~~~~l~~--~~~~~~~~~~SPD 162 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQ-------------------------EGKAAVRQLTH--GEGFATDAKLSPK 162 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSS-------------------------CSTTSCCBCCC--SSSCEEEEEECTT
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCC-------------------------CCcceEEEccc--CCcccccccCCCC
Confidence 46789999997 66666679999999987 4 3332222 6678999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc----------------eEEEEe--cCCEEEEEecCC-----------
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR----------------VGALAW--NTYILSSGSRCG----------- 397 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~----------------V~~l~~--~~~~L~sgs~dg----------- 397 (609)
|++||+++. +.|.+||+.+++.......+... +..++| +++.|++++.|+
T Consensus 163 G~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~ 241 (741)
T 2ecf_A 163 GGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEV 241 (741)
T ss_dssp SSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEE
T ss_pred CCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCC
Confidence 999998875 68999999988776655544432 367888 578888887665
Q ss_pred ----------------------eEEEEEcCC-CCeeEEEEc--cCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeC
Q psy4876 398 ----------------------NIVHHDVRS-RDHKVALLQ--NHTQEVCGLKWSPDGRYLASGGN-----DNLLNIWSG 447 (609)
Q Consensus 398 ----------------------~I~iwd~~~-~~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~-----Dg~I~iwd~ 447 (609)
.|.+||+.+ +. ...... .|...+..++| |||++|++++. +..|++||+
T Consensus 242 ~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 242 YADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp CSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred CCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 788999987 64 333222 47788999999 99999987764 568999999
Q ss_pred CCCCCCCCccceEeecCCcc----cEEEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcCC-CCeEEE-EEcC
Q psy4876 448 VPGQHTFSTQPIHSLSRHQA----AVKAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDTK-SQVCAL-LWNS 520 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~~-~~v~sl-~~s~ 520 (609)
.++ +....+..+.. .+..++|+|+|. +++++. .|+.++||.+. .+. ...+..+ ..+..+ .|+|
T Consensus 320 ~~g------~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 320 ASN------QQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE 389 (741)
T ss_dssp TTC------CEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET
T ss_pred CCC------ceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC
Confidence 987 44444433332 346889999997 666653 68877777665 344 5555543 467777 5999
Q ss_pred CCCeEEEEEecCCC--eEEEEECCC-CceEEEEeCCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCC
Q psy4876 521 DYKELVSAHGFAQN--QLIIWKYPS-LVKVAELHGHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEK 586 (609)
Q Consensus 521 ~g~~l~~~sG~~dg--~I~Iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~ 586 (609)
+++.+++.+. .++ .++||++.. +..+..+.. ...+..++|+|||++|+....+ ..+.+|+..+.
T Consensus 390 dg~~l~~~~~-~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 390 KAGLAYFRAG-IESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp TTTEEEEEEC-SSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCEEEEEEe-CCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 9998876543 455 899999864 555666655 6678999999999988876544 46888887543
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=8.2e-20 Score=196.47 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=192.2
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...+++|+|++++ +++++....|+||+...... .......... . ........+.+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~------~~~~~~~~~~--~---~~~~~~~~~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLI------QNKPGDDPNK--I---VDKVQGLLVPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCC------CCCTTCCTTC--E---EECCCCEEECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhh------hcccccCccc--c---cccCccccccCCCcccEEEEcCCC
Confidence 4468999999974 66655544599987643100 0000000000 0 001111233466789999999999
Q ss_pred CEEE----EEeCCCeEEEEeCCCC--------e---eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 348 YMLG----VGTSLGTVQLWDVSAK--------K---KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 348 ~~La----sgs~dg~I~iwd~~~~--------~---~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
++|| +|+.|+.|+|||+.++ + .+..+.+|...|.+++|+ +.+|++++.||+|++||++++ .
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~-~ 183 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET-V 183 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS-E
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC-c
Confidence 9999 6788999999998654 1 256677899999999994 579999999999999999987 4
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCcEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ll 482 (609)
.+....+|...|.+++|+|+|++|++|+.||.|++||++ + .....+.. |...|.+++|++++..++
T Consensus 184 ~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~ 256 (434)
T 2oit_A 184 KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L------QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAI 256 (434)
T ss_dssp EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C------CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEE
T ss_pred ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C------cccccccCCcccCCCCceeEEEEEEecCceEEE
Confidence 555666789999999999999999999999999999998 4 23333322 334899999999775444
Q ss_pred EEEeccCCC------eEEEEECCCCc-----eeEEEc-C-----C--CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 483 ASGGGTADR------HIYFWNVSSGA-----CLDSID-T-----K--SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 483 asggGs~Dg------~I~iwd~~t~~-----~~~~~~-~-----~--~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+.+. .|| .+++||+.... ....+. . . .....+.+-++.++++++++ ..+.|.|+....
T Consensus 257 ~~~~--~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~-~s~dv~vl~~~~ 333 (434)
T 2oit_A 257 VYAA--ADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA-ASTEVSILARQS 333 (434)
T ss_dssp EEEE--TTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET-TCSBCEEEEECT
T ss_pred EEcc--CCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC-CCCceeEEEecC
Confidence 4443 332 49999998642 111111 0 1 12233445577777777643 555566655322
Q ss_pred C---ceEEEEe------------CCCCCEEEEEEe---------------CCCCEEEEEECCCCEEEEEcCCC
Q psy4876 544 L---VKVAELH------------GHSARVLNLAMS---------------PDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 544 ~---~~~~~l~------------~h~~~V~~l~~s---------------pdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
. .....+. +.......+++. |-...|..-+.||.|..|.+...
T Consensus 334 ~~~~~~~~~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~~ 406 (434)
T 2oit_A 334 DQINWESWLLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMINQ 406 (434)
T ss_dssp TSSCEEEEEECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEEC
T ss_pred CCCccEEEeccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEec
Confidence 1 1011110 011223333332 12357889999999999999873
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2.7e-19 Score=184.89 Aligned_cols=244 Identities=9% Similarity=0.054 Sum_probs=191.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-------CCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCC-EEEEEecCCeEEEEE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-------LGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTY-ILSSGSRCGNIVHHD 403 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~-~L~sgs~dg~I~iwd 403 (609)
....+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++| +++ ++++...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3467889999999999888874 568999999999888877643 34666777 566 455556689999999
Q ss_pred cCCCCeeEEEEccCCC---------CeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 404 VRSRDHKVALLQNHTQ---------EVCGLKWSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~---------~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
..++. .+..+..+.. .+.+++|+|+|+++++++ .++.|.+||+.++ +.+..+..+...+.++
T Consensus 118 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 118 AKTGE-VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI------KLKTAIQNTGKMSTGL 190 (353)
T ss_dssp TTTCC-EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT------EEEEEECCCCTTCCCC
T ss_pred CCCCe-eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC------ceEEEecCCCCccceE
Confidence 99874 5555554432 278899999999887776 4788999999987 5666666456668899
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKV 547 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~ 547 (609)
+|+|++..++++. .++.|.+||+.+++.+..+.. ...+..++|+|++++++++. ..++.|.+||..+++.+
T Consensus 191 ~~s~dg~~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 191 ALDSEGKRLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD-SKAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EEETTTTEEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE-SSSSEEEEEETTTCCEE
T ss_pred EECCCCCEEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe-CCCCEEEEEECCCCcEE
Confidence 9999997666653 589999999999998887764 23578899999999887764 35799999999999988
Q ss_pred EEEeCCCCCEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 548 AELHGHSARVLNLAMSPDETTVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 548 ~~l~~h~~~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
..+..+.. .+++|+|+|++++.++ .++.|.+||+.+++....
T Consensus 267 ~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 267 AKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp EEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 88765432 5799999999766665 689999999988765443
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=9.8e-20 Score=216.97 Aligned_cols=202 Identities=8% Similarity=-0.029 Sum_probs=146.7
Q ss_pred EecCCCCceEEEEecCC-EEEEEecCCeEEEEEcCCCCeeEEEEccC---------------------------------
Q psy4876 372 TMDGHDVRVGALAWNTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNH--------------------------------- 417 (609)
Q Consensus 372 ~l~~h~~~V~~l~~~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h--------------------------------- 417 (609)
.+.+|...+.++.|+++ ++++++.+|.+.+|.+.........+..|
T Consensus 198 ~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l 277 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI 277 (1045)
T ss_dssp EEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred ECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence 34567777888888654 45566777888888764321122222222
Q ss_pred -----------------CCCeEEEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc-cEEEEEEcCCC
Q psy4876 418 -----------------TQEVCGLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA-AVKAIAWCPWS 478 (609)
Q Consensus 418 -----------------~~~V~~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~ 478 (609)
...+.+++|+ |||++|++++ ++.|++|++..+ . ...+..|.. .+..++|+ ++
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSS-SE
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEc-CC
Confidence 1245667777 7777666666 566777776654 2 334556666 88999999 88
Q ss_pred CcEEEEEeccCCCeEE-EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE
Q psy4876 479 PNVLASGGGTADRHIY-FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV 557 (609)
Q Consensus 479 ~~llasggGs~Dg~I~-iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V 557 (609)
..+++.+ .+..+. +||+.+++......+...+..++|+|+|++|++++ .++.|++||+.+++....+.+|...|
T Consensus 349 ~~l~~~s---~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v 423 (1045)
T 1k32_A 349 VAFIHGT---REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTVIERSREAMI 423 (1045)
T ss_dssp EEEEEEE---TTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSSCC
T ss_pred CeEEEEE---CCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC--CCCeEEEEECCCCceEEeccCCCCCc
Confidence 6655543 478888 99998877654443346899999999999999854 78999999999999888877899999
Q ss_pred EEEEEeCCCCEEEEEECCC----------CEEEEEcCCCc
Q psy4876 558 LNLAMSPDETTVLSAGADE----------TLRLWKIFEKV 587 (609)
Q Consensus 558 ~~l~~spdg~~L~s~s~Dg----------~I~iWdl~~~~ 587 (609)
.+++|+|||++|++++.++ .|++||+.++.
T Consensus 424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999999999999887754 89999998765
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=4e-20 Score=210.64 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=173.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC-----CC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS-----RD 408 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~-----~~ 408 (609)
..|.+++|+|| ..++++. ++.|++||+.+++.... ..+...+.+++| +++.|+++ .++.|++||+.+ +.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 57999999999 6666664 49999999998766544 446777888899 57888885 689999999987 53
Q ss_pred eeEEEEccCCCC--------------eEEEEEccCCCEEEEEe---------------------------------CCCc
Q psy4876 409 HKVALLQNHTQE--------------VCGLKWSPDGRYLASGG---------------------------------NDNL 441 (609)
Q Consensus 409 ~~~~~~~~h~~~--------------V~~l~~spdg~~lasgs---------------------------------~Dg~ 441 (609)
.......+... +.+++|+|||++|++++ .+..
T Consensus 158 -~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 158 -AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp -CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred -cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 33333333332 48899999999999987 4467
Q ss_pred EEEEeCCCCCCCCCccceEee--cCCcccEEEEEEcCCCCcEEEEEe--ccCCCeEEEEECCCCceeEEEc---CCC---
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSL--SRHQAAVKAIAWCPWSPNVLASGG--GTADRHIYFWNVSSGACLDSID---TKS--- 511 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~llasgg--Gs~Dg~I~iwd~~t~~~~~~~~---~~~--- 511 (609)
|++||+.++ ...... ..|...+.+++|+|+|..++++.. +.....|++||+.+++....+. ...
T Consensus 237 l~~~d~~~~------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 237 VGIYHLATG------KTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEETTTT------EEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCC
T ss_pred EEEEECCCC------ceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeEC
Confidence 999999877 322222 246678999999999976666542 0011389999999984433332 111
Q ss_pred CeEEEEEcC--CCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEE-EEEeCCCCEEEEEECC-C----CEEEEE
Q psy4876 512 QVCALLWNS--DYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLN-LAMSPDETTVLSAGAD-E----TLRLWK 582 (609)
Q Consensus 512 ~v~sl~~s~--~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~-l~~spdg~~L~s~s~D-g----~I~iWd 582 (609)
.+..+.|+| +|+++++ +..++.++||++. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|..||
T Consensus 311 ~~~~~~~sp~~dg~~l~~--~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQ--SRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp CCSCCEECTTCSSEEEEE--ECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred ccCCceeecCCCCEEEEE--EccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 246789999 9997776 4478888999876 67777888888878877 7999999988766654 3 566666
Q ss_pred cCCCc
Q psy4876 583 IFEKV 587 (609)
Q Consensus 583 l~~~~ 587 (609)
+.++.
T Consensus 389 ~~~~~ 393 (706)
T 2z3z_A 389 IKGGK 393 (706)
T ss_dssp TTCCC
T ss_pred cCCCC
Confidence 65543
No 147
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=3.8e-19 Score=182.55 Aligned_cols=236 Identities=12% Similarity=0.124 Sum_probs=179.6
Q ss_pred EEEccCCCE-EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeEEEEcc
Q psy4876 341 VAWIQEGYM-LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 341 v~~spdg~~-Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~~ 416 (609)
..|.+++.+ ++++..++.|.+||+.+++.+..+..+...+ .++| +++.+++++. ++.|.+||+.++......+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 345565554 6677788999999999999988887776667 8999 5665655554 899999999987532666666
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCC---cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe-
Q psy4876 417 HTQEVCGLKWSPDGRYLASGGNDN---LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH- 492 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~- 492 (609)
+.....+++|+|+|++|+++..++ .|.+||+.++ +.+..+.. .....+++|+|+++.+++++. .++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~ 152 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIPI-PYDAVGIAISPNGNGLILIDR--SSANT 152 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC------CeEEEEEC-CCCccceEECCCCCEEEEEec--CCCce
Confidence 666665599999999999655553 8999999887 55555554 345689999999988887764 5577
Q ss_pred EEEEECCCCcee-----EEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---EEEEeCCCCCEEEEEEeC
Q psy4876 493 IYFWNVSSGACL-----DSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK---VAELHGHSARVLNLAMSP 564 (609)
Q Consensus 493 I~iwd~~t~~~~-----~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~---~~~l~~h~~~V~~l~~sp 564 (609)
|.+|++.....+ ..+.....+..++|+|+|++++++. ..++.|.+||+.+++. +..+..+ ..+.+++|+|
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~sp 230 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVAN-LIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSR 230 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEE-TTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECT
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEe-CCCCeEEEEECCCCcccceeeeccCC-CCCceEEECC
Confidence 999999854432 3334456789999999999887763 4689999999999887 7777644 6678999999
Q ss_pred CCCEEEEEE-CCCCEEEEEcCCCcc
Q psy4876 565 DETTVLSAG-ADETLRLWKIFEKVK 588 (609)
Q Consensus 565 dg~~L~s~s-~Dg~I~iWdl~~~~~ 588 (609)
||++|+.++ .++.|.+||+.+++.
T Consensus 231 dg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 231 DGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp TSSEEEEECSSEEEEEEEETTTTEE
T ss_pred CCCEEEEEEcCCCEEEEEECCCCce
Confidence 999776655 578899999988765
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=2e-19 Score=214.22 Aligned_cols=272 Identities=13% Similarity=0.034 Sum_probs=209.6
Q ss_pred eEEEEEec-CCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCC-CeEEEEEccCC
Q psy4876 271 YLNLIDWS-HFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNE-NVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~ws-p~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~-~V~~v~~spdg 347 (609)
.+..++|| |++ .++.+.++.|++|++.. +....+. .+.. .+.+++|+ +|
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~-------------------------~~~~~~~--~~~~~~~~~~~~s-dg 348 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSG-------------------------TYVLKVP--EPLRIRYVRRGGD-TK 348 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTS-------------------------SBEEECS--CCSCEEEEEECSS-SE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCC-------------------------CceEEcc--CCCcceEEeeeEc-CC
Confidence 46789999 997 56666699999999987 5433321 2555 89999999 99
Q ss_pred CEEEEEeCCCeEE-EEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQ-LWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~-iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+.|++++.++.|. +||+.+++.. .+.+|...+..++| +++.|++++.++.|++||+.++. ......+|...+.++
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCE
T ss_pred CeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccce
Confidence 9999999888898 9999876654 44488889999999 58999999999999999999874 555666899999999
Q ss_pred EEccCCCEEEEEeCCC----------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 425 KWSPDGRYLASGGNDN----------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+|+|||++|++++.++ .|++||+.++ + +..+..|...+..++|+|+|..+++.+ .++...
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g------~-~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~ 496 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR------K-IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDP 496 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT------E-EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCC
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCC------c-EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCc
Confidence 9999999999887654 8999999876 4 667778888899999999998666554 445445
Q ss_pred EEECCCCc-------------------------------------------eeEEEcCC-CCeEEEEEcCCCCeEEEE--
Q psy4876 495 FWNVSSGA-------------------------------------------CLDSIDTK-SQVCALLWNSDYKELVSA-- 528 (609)
Q Consensus 495 iwd~~t~~-------------------------------------------~~~~~~~~-~~v~sl~~s~~g~~l~~~-- 528 (609)
+|+..... .+..+..+ ..+..+.+++++..+++.
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~ 576 (1045)
T 1k32_A 497 SPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPV 576 (1045)
T ss_dssp EECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCC
T ss_pred CcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecc
Confidence 55432211 11222222 467899999999877751
Q ss_pred ---------EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 529 ---------HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 529 ---------sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.......|.+||+.+++... +. ..+..++|+|||++|++++.| .|++||+.+++
T Consensus 577 ~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 577 HGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp CCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred cCcccccccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 11235678999998877533 33 568899999999999999876 89999998766
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=2.5e-19 Score=188.24 Aligned_cols=281 Identities=12% Similarity=0.099 Sum_probs=194.8
Q ss_pred eEEEEEecCCC--eEEEEc-CC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
|+...+||||+ ++.++. ++ .|++||+.+ +....+... +...+.+++|+|
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-------------------------g~~~~lt~~-~~~~~~~~~~sp 90 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT-------------------------QVATQLTEG-RGDNTFGGFLSP 90 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-------------------------CEEEECCCS-SCBCSSSCEECT
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC-------------------------CceEEeeeC-CCCCccceEEcC
Confidence 44457899997 444555 45 488999887 655544332 444455678999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe----cCCEEEEE----------------------ecCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW----NTYILSSG----------------------SRCGNI 399 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~----~~~~L~sg----------------------s~dg~I 399 (609)
||+.|+.+..++.|.+||+.+++....+..+...+....| ++..++.. ..++.|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 91 DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 9999999999999999999999877777767666655554 46666642 234679
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCc--ccEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQ--AAVK 470 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~--~~V~ 470 (609)
.+||+.++. ...+..+...+..++|+| ||+.|+.+..+ ..|+++|+..+ ....+..+. ..+.
T Consensus 171 ~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-------~~~~l~~~~~~~~~~ 241 (388)
T 3pe7_A 171 MRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT-------NMRKVKTHAEGESCT 241 (388)
T ss_dssp EEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC-------CCEESCCCCTTEEEE
T ss_pred EEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC-------ceEEeeeCCCCcccc
Confidence 999999874 444555677899999999 99999887763 37888888755 233444444 3578
Q ss_pred EEEEcCCCCcEEEEEeccC--CCeEEEEECCCCceeEEEcCCC------CeEEEEEcCCCCeEEEEEe-------cCCCe
Q psy4876 471 AIAWCPWSPNVLASGGGTA--DRHIYFWNVSSGACLDSIDTKS------QVCALLWNSDYKELVSAHG-------FAQNQ 535 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~--Dg~I~iwd~~t~~~~~~~~~~~------~v~sl~~s~~g~~l~~~sG-------~~dg~ 535 (609)
.++|+|+|..+++.+.... +..|++||+.+++......... ....+.|+|+|+.|++... ..+..
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 321 (388)
T 3pe7_A 242 HEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPF 321 (388)
T ss_dssp EEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCE
T ss_pred cceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCE
Confidence 8999999987766543111 2349999999987543222111 0122379999999886431 35678
Q ss_pred EEEEECCCCceEEEEeCCCC-----------CEEEEEEeCCCCEEEEEE-CCCCEEEEEcCCCc
Q psy4876 536 LIIWKYPSLVKVAELHGHSA-----------RVLNLAMSPDETTVLSAG-ADETLRLWKIFEKV 587 (609)
Q Consensus 536 I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~s~s-~Dg~I~iWdl~~~~ 587 (609)
|++||+.+++. ..+..|.. .+.+++|+|||+.|+.++ .+|...||.+.-..
T Consensus 322 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 322 LYVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred EEEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 99999988765 45555655 578899999999887665 47888888775443
No 150
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=212.32 Aligned_cols=280 Identities=11% Similarity=0.109 Sum_probs=195.6
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccCCCEE
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQEGYML 350 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spdg~~L 350 (609)
.++|+|++ +++.+.|+.|++||+.+ +....+.... ....|.+++|||||++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~-------------------------g~~~~~~~~~~~~~~~~~~~~~SpDg~~l 74 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIET-------------------------GQSYTILSNRTMKSVNASNYGLSPDRQFV 74 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSS-------------------------CCEEEEECHHHHHTTTCSEEEECTTSSEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCC-------------------------CcEEEEEccccccccceeeEEECCCCCeE
Confidence 47899997 66667799999999988 6655444321 11248999999999999
Q ss_pred EEEeC---------CCeEEEEeCCCCeeE--EEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 351 GVGTS---------LGTVQLWDVSAKKKC--RTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 351 asgs~---------dg~I~iwd~~~~~~~--~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
|+++. ++.|++||+.+++.+ ..+ ...+..++| +|+.|+.+. ++.|++||+.++........++
T Consensus 75 a~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~ 150 (719)
T 1z68_A 75 YLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR 150 (719)
T ss_dssp EEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred EEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence 98876 789999999988762 222 246788899 678888875 7899999998764322112233
Q ss_pred CCCe-----------------EEEEEccCCCEEEEEeCCC----------------------------------cEEEEe
Q psy4876 418 TQEV-----------------CGLKWSPDGRYLASGGNDN----------------------------------LLNIWS 446 (609)
Q Consensus 418 ~~~V-----------------~~l~~spdg~~lasgs~Dg----------------------------------~I~iwd 446 (609)
...| .+++|||||++||+++.|. .|++||
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 3222 4899999999999988652 788999
Q ss_pred CCCCCCC--CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC--CCeEEEEE----CCCCceeEEE----cC-CCCe
Q psy4876 447 GVPGQHT--FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA--DRHIYFWN----VSSGACLDSI----DT-KSQV 513 (609)
Q Consensus 447 ~~~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~--Dg~I~iwd----~~t~~~~~~~----~~-~~~v 513 (609)
+.++... ........+.+|...+..++|+||+ .++++..... ...|.+|| +.++++...+ .. ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 9876210 0000002234688889999999996 5666532112 24588999 8877765444 22 2345
Q ss_pred E-----EEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEE
Q psy4876 514 C-----ALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-----ETLRLW 581 (609)
Q Consensus 514 ~-----sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iW 581 (609)
. .+.|+|+|+.++......++ .|.+||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~ 387 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIY 387 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEE
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEE
Confidence 4 78999999987765443444 57777877666 45566666678888888 88888777665 889999
Q ss_pred EcCC
Q psy4876 582 KIFE 585 (609)
Q Consensus 582 dl~~ 585 (609)
.+..
T Consensus 388 ~~~~ 391 (719)
T 1z68_A 388 RISI 391 (719)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8864
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=7.3e-20 Score=208.86 Aligned_cols=269 Identities=11% Similarity=0.034 Sum_probs=190.8
Q ss_pred eEEEEEecCCC-eEE-EEcC---------CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCe
Q psy4876 271 YLNLIDWSHFN-VLA-VALG---------GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENV 338 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~d---------g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V 338 (609)
.|..++||||+ .|+ ++.+ +.|++||+.+ +....+.... +...+
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------~~~~~l~~~~~~~~~~ 116 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH-------------------------GDPQSLDPPEVSNAKL 116 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS-------------------------CCCEECCCTTCCSCCC
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCC-------------------------CceEeccCCccccccc
Confidence 46789999997 444 4443 7899999988 5554444433 45568
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCce------------------EEEEe--cCCEEEEEecCC-
Q psy4876 339 CSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRV------------------GALAW--NTYILSSGSRCG- 397 (609)
Q Consensus 339 ~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V------------------~~l~~--~~~~L~sgs~dg- 397 (609)
.+++|+|||++||+++. +.|++||+.+++.......+...+ .+++| +++.|++++.++
T Consensus 117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 99999999999999887 799999999988777766544433 78999 578888887543
Q ss_pred ---------------------------------eEEEEEcCCCCeeEEEEccC------CCCeEEEEEccCCCEEEEEeC
Q psy4876 398 ---------------------------------NIVHHDVRSRDHKVALLQNH------TQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 398 ---------------------------------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spdg~~lasgs~ 438 (609)
.|++||+.++. ....+..+ ...+..++|+|||++|++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence 79999998764 33444443 567899999999998877653
Q ss_pred ----CCcEEEEeCCCCCCCCCccceEeecC-CcccE----EEEEEcCCCCcEEEEEeccCCC------eEEEEE-CCCCc
Q psy4876 439 ----DNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAV----KAIAWCPWSPNVLASGGGTADR------HIYFWN-VSSGA 502 (609)
Q Consensus 439 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V----~~l~~sp~~~~llasggGs~Dg------~I~iwd-~~t~~ 502 (609)
+..|++||+.++ +....+.. +...+ ..++|+|+|+.+++.++ ..++ .|++|| ...+.
T Consensus 275 ~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~~~~l~~~d~~~~~~ 347 (723)
T 1xfd_A 275 RAQNVSILTLCDATTG------VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA-IPQGGRGKFYHITVSSSQPNSS 347 (723)
T ss_dssp TTSCEEEEEEEETTTC------CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE-ECCSSSSCEEEEEEECSSCCSS
T ss_pred CCCCeEEEEEEeCCCC------cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe-cccCCCcceeEEEEEeccCCCC
Confidence 357999999887 33333322 33333 37899999988776522 3566 677788 44444
Q ss_pred --eeEEEc-CCCCeEE-EEEcCCCCeEEEEEecCC--CeEEEEECCCCc--eEEEEeC---CCCCEEEEEEeCCCCEEEE
Q psy4876 503 --CLDSID-TKSQVCA-LLWNSDYKELVSAHGFAQ--NQLIIWKYPSLV--KVAELHG---HSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 503 --~~~~~~-~~~~v~s-l~~s~~g~~l~~~sG~~d--g~I~Iwd~~~~~--~~~~l~~---h~~~V~~l~~spdg~~L~s 571 (609)
+...+. .+..+.. ++|+|+|+.|++.+. .+ +.++||++.... ....+.. |...+..++|+|||++|+.
T Consensus 348 ~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~ 426 (723)
T 1xfd_A 348 NDNIQSITSGDWDVTKILAYDEKGNKIYFLST-EDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (723)
T ss_dssp SCCCCBSCCSSSCEEEEEEEETTTTEEEEEES-SSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred ccceeEeecCCeEEEeeeEEcCCCCEEEEEEc-CCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEE
Confidence 144444 3345555 699999999987643 44 789999886432 3334443 6677899999999998876
Q ss_pred EEC
Q psy4876 572 AGA 574 (609)
Q Consensus 572 ~s~ 574 (609)
...
T Consensus 427 ~~~ 429 (723)
T 1xfd_A 427 KCE 429 (723)
T ss_dssp ECC
T ss_pred Ecc
Confidence 543
No 152
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.9e-19 Score=179.94 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=169.7
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCC-CCeeEEEEccC-CCCeEEEEEcc
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRS-RDHKVALLQNH-TQEVCGLKWSP 428 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~-~~~~~~~~~~h-~~~V~~l~~sp 428 (609)
++.++.|++||+.+++... +..|...|.+++| ++.+|++++ ++.|.+||+.+ +. .......| ...+.+++|+|
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECC
Confidence 4578899999999887664 4458899999999 578888876 78999999998 64 44444455 46789999999
Q ss_pred CCCEEEEEeC--CCc--EEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC--CCCc
Q psy4876 429 DGRYLASGGN--DNL--LNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV--SSGA 502 (609)
Q Consensus 429 dg~~lasgs~--Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~--~t~~ 502 (609)
+|++|++++. ++. |++|++..+ ....+..+. .+..++|+|++..+++++. .++.+++|++ .++.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~-~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGG-------TPRLMTKNL-PSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGV 164 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCC-------CCEECCSSS-SEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCC-------ceEEeecCC-CccceEECCCCCEEEEEEC--CCCceEEEEEECCCCc
Confidence 9999999983 344 445555544 233444333 4889999999987776663 6888888885 4454
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC------
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYP-SLVKVAELHGHSARVLNLAMSPDETTVLSAGAD------ 575 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D------ 575 (609)
..........+.++.|+|+++.+++++ ..++.+.||++. .+..+..+..|...+.+++|+|+|++|++++.+
T Consensus 165 ~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 243 (297)
T 2ojh_A 165 ETRLTHGEGRNDGPDYSPDGRWIYFNS-SRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDH 243 (297)
T ss_dssp EEECCCSSSCEEEEEECTTSSEEEEEE-CTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSC
T ss_pred ceEcccCCCccccceECCCCCEEEEEe-cCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcc
Confidence 443334456899999999999988764 357889999886 566677788888889999999999999988876
Q ss_pred -----CCEEEEEcCCCcc
Q psy4876 576 -----ETLRLWKIFEKVK 588 (609)
Q Consensus 576 -----g~I~iWdl~~~~~ 588 (609)
+.|.+||+.+++.
T Consensus 244 ~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 244 PRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSSEEEEEEEEETTSCSC
T ss_pred cccCceEEEEEecCCCCc
Confidence 5699999987654
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.84 E-value=3.1e-19 Score=183.95 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=181.0
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEE-EEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYIL-SSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L-~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++| +++.+ +++..++.|.+||+.++. .+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-NTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-EEEEEE
Confidence 45678888999999999999999999999888887543 25677888 46654 555678999999998863 444444
Q ss_pred c-C-----CCCeEEEEEccCCCEEEEEeCC------------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC
Q psy4876 416 N-H-----TQEVCGLKWSPDGRYLASGGND------------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 416 ~-h-----~~~V~~l~~spdg~~lasgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 477 (609)
. + ...+.+++|+|||++|++++.+ +.|.+||+.++... ..+..+. +...+.+++|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~~-~~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---KPVRTFP-MPRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---CCSEEEE-CCSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc---ceeeecc-CCCcccceeECCC
Confidence 2 2 2337889999999999998865 89999999875211 2333333 3346889999999
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEcCCC----------------------------------------------
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSIDTKS---------------------------------------------- 511 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~---------------------------------------------- 511 (609)
+. +++. ++.|.+||+.+++.+..+....
T Consensus 159 g~-l~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 159 GS-LYVA-----GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp SC-EEEE-----SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred Cc-EEEc-----cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 97 6663 2339999999998877665331
Q ss_pred -----------------------CeEEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 512 -----------------------QVCALLWNS-DYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 512 -----------------------~v~sl~~s~-~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.+..++|+| ++++++++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGD 307 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSS
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCC-CCccceEECCCCC
Confidence 244667789 99998884 789999999999988877643 4578999999999
Q ss_pred EEEEEECCCCEEEEEcCCCccchhh
Q psy4876 568 TVLSAGADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~~~~k~ 592 (609)
+|++++.++.|++||+.+.+.....
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCeEEEEeccccceeeee
Confidence 9988888999999999887755443
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=2.1e-19 Score=200.19 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=185.8
Q ss_pred eEEEEEecCCC--eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.|.+++|+||| ++.++. ||++.||++.+ +....+... +...+.+++|+||
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-------------------------g~~~~lt~~-~~~~~~~~~~spd- 75 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-------------------------GETVKLNRE-PINSVLDPHYGVG- 75 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEET-------------------------TEEEECCSS-CCSEECEECTTCS-
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcC-------------------------CCcEeeecc-cccccccccCCCC-
Confidence 48899999997 444555 99999999865 544433321 3368999999999
Q ss_pred CEEEEEeC---CCeEEEEeCCC---CeeEEEec-CCCCceEEEEecCC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 YMLGVGTS---LGTVQLWDVSA---KKKCRTMD-GHDVRVGALAWNTY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~---dg~I~iwd~~~---~~~~~~l~-~h~~~V~~l~~~~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
+.++++.. +....||.+.. +... .+. .+...+.+++++++ .+++.+.++.+.+||+.++. ...... +..
T Consensus 76 ~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~~~l~~-~~~ 152 (582)
T 3o4h_A 76 RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-LRELAR-LPG 152 (582)
T ss_dssp EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-EEEEEE-ESS
T ss_pred eEEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-EEEeec-CCC
Confidence 77777765 44456654432 3333 333 23333555666764 44444455556699998863 333333 333
Q ss_pred CeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eE
Q psy4876 420 EVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HI 493 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I 493 (609)
.+++|+|||++|++++.| +.|++||+.++ + ...+..|...+..++|+|||+.++ ++ ..++ .|
T Consensus 153 --~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g------~-~~~l~~~~~~~~~~~~SpDG~~l~-~~--~~~~~~~i 220 (582)
T 3o4h_A 153 --FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG------G-LRVFDSGEGSFSSASISPGMKVTA-GL--ETAREARL 220 (582)
T ss_dssp --CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC------C-CEEECCSSCEEEEEEECTTSCEEE-EE--ECSSCEEE
T ss_pred --ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC------C-ceEeecCCCccccceECCCCCEEE-Ec--cCCCeeEE
Confidence 789999999999988877 78999999887 3 346778888999999999997666 44 3577 89
Q ss_pred EEEECCCCceeEEEcCC-CCeEEEE--------EcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 494 YFWNVSSGACLDSIDTK-SQVCALL--------WNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 494 ~iwd~~t~~~~~~~~~~-~~v~sl~--------~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
++||+.+++.. .+..+ ..+..+. |+|+|..++++ ..++.++||++ ++.+. .+.+.|.+++|+
T Consensus 221 ~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~--~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s- 291 (582)
T 3o4h_A 221 VTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVA--RREGRSAVFID--GERVE---APQGNHGRVVLW- 291 (582)
T ss_dssp EEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEE--EETTEEEEEET--TEEEC---CCSSEEEEEEEE-
T ss_pred EEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEE--EcCCcEEEEEE--CCeec---cCCCceEEEEec-
Confidence 99999998887 54433 3455555 99999655553 47999999999 65443 345779999999
Q ss_pred CCCEEEEEECCCC---EEEEEcCC
Q psy4876 565 DETTVLSAGADET---LRLWKIFE 585 (609)
Q Consensus 565 dg~~L~s~s~Dg~---I~iWdl~~ 585 (609)
||+++++++.+.+ |.+|+..+
T Consensus 292 dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 292 RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999999888754 66666543
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.83 E-value=2.3e-18 Score=180.37 Aligned_cols=256 Identities=13% Similarity=0.047 Sum_probs=177.2
Q ss_pred cceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCC-CCeeEEEecCC-CCceEEEEe--cCCE--EEEEe-
Q psy4876 324 RAIDHLMDLE--GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVS-AKKKCRTMDGH-DVRVGALAW--NTYI--LSSGS- 394 (609)
Q Consensus 324 ~~~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~--~~~~--L~sgs- 394 (609)
+.+..+.... ....+..++|+|+|++|++++.+ .|.+|++. +++........ .+.+.+++| +++. ++++.
T Consensus 26 g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~ 104 (365)
T 1jof_A 26 LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQ 104 (365)
T ss_dssp TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSS
T ss_pred CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecC
Confidence 5554444432 33578899999999999998887 99999997 77665433211 122445677 4663 44543
Q ss_pred ------------cCCeEEEEEcCCCCeeEEEEc----cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC-CCCCCCCc
Q psy4876 395 ------------RCGNIVHHDVRSRDHKVALLQ----NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGV-PGQHTFST 456 (609)
Q Consensus 395 ------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~-~~~~~~~~ 456 (609)
.+|.+.+|++.........+. .+...+.+++|+|||++|++++. ++.|++||+. +++.
T Consensus 105 ~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~---- 180 (365)
T 1jof_A 105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV---- 180 (365)
T ss_dssp TTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE----
T ss_pred CcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCE----
Confidence 689999999974333332222 25567999999999998887764 6799999998 5521
Q ss_pred cceEeec--CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC--CCcee---EEEc---CC----C-------CeEE
Q psy4876 457 QPIHSLS--RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS--SGACL---DSID---TK----S-------QVCA 515 (609)
Q Consensus 457 ~~~~~~~--~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~--t~~~~---~~~~---~~----~-------~v~s 515 (609)
..+..+. .|...+..++|+|+|+.+++++ ..++.|.+|++. +++.. ..+. .. . .+..
T Consensus 181 ~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALM--EAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred EEeeeEecCCCCCCCCEeEECCCCCEEEEEE--CCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 2223333 2456789999999998776665 357899999865 56643 2222 11 2 4789
Q ss_pred EE-EcCCCCeEEEEEecCC----CeEEEEECC-CCceEE---EEeCCCCCEEEEEEeC---CCCEEEEEECC-CCEEEEE
Q psy4876 516 LL-WNSDYKELVSAHGFAQ----NQLIIWKYP-SLVKVA---ELHGHSARVLNLAMSP---DETTVLSAGAD-ETLRLWK 582 (609)
Q Consensus 516 l~-~s~~g~~l~~~sG~~d----g~I~Iwd~~-~~~~~~---~l~~h~~~V~~l~~sp---dg~~L~s~s~D-g~I~iWd 582 (609)
++ |+|+|++|+++....+ +.|.+|++. +++... .+..+...+..++|+| ||++|++++.+ +.|.+|+
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 99 9999999887643233 289999986 565433 2334555677899999 89999999875 8999999
Q ss_pred cCCC
Q psy4876 583 IFEK 586 (609)
Q Consensus 583 l~~~ 586 (609)
+...
T Consensus 339 ~~~~ 342 (365)
T 1jof_A 339 WKDE 342 (365)
T ss_dssp EETT
T ss_pred Echh
Confidence 9765
No 156
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=1.1e-17 Score=173.32 Aligned_cols=246 Identities=12% Similarity=0.087 Sum_probs=171.9
Q ss_pred EEEEEecCCC-eEEEEc---CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVAL---GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~---dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
...++|+|++ +++++. ++.|++|++.+ +....+..+. +...+..++|+|+
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~-------------------------g~~~~~~~~~~~~~~p~~~a~spd 96 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDG-------------------------QTAHKLNTVVAPGTPPAYVAVDEA 96 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEET-------------------------TEEEEEEEEEEESCCCSEEEEETT
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecC-------------------------CcEEEeeeeecCCCCCEEEEECCC
Confidence 3459999997 665555 58999999976 6665665544 6778899999999
Q ss_pred CCEEEEEe-CCCeEEEEeCCC-C--eeEEEecC---------CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 347 GYMLGVGT-SLGTVQLWDVSA-K--KKCRTMDG---------HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 347 g~~Lasgs-~dg~I~iwd~~~-~--~~~~~l~~---------h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
|++|++++ .++.|.+|++.. + ..+..+.. +...+.+++| +++++++...++.|.+|++.......
T Consensus 97 g~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 97 RQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp TTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEE
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEE
Confidence 99888887 679999999963 2 23333322 1234788999 56766666778899999998322222
Q ss_pred --EEEcc-CCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCCCCCCCCCccceEeecCCc------ccEEEEEEcCCCCcE
Q psy4876 412 --ALLQN-HTQEVCGLKWSPDGRYLAS-GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ------AAVKAIAWCPWSPNV 481 (609)
Q Consensus 412 --~~~~~-h~~~V~~l~~spdg~~las-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~------~~V~~l~~sp~~~~l 481 (609)
..+.. ....+..++|+|||++|++ +..++.|.+|++...... ...+..+.... ..+..++|+|+|+.+
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l 254 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFL 254 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE--EEEEEEEESSCTTCCSCCEEEEEEECTTSCEE
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc--eEEeeeeeecCCCCCCCCcceeEEECCCCCEE
Confidence 22222 2346788999999996665 456889999998752110 01222332222 458899999999877
Q ss_pred EEEEeccCCCeEEEEECCC-C--ceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEE--ECCCCceE
Q psy4876 482 LASGGGTADRHIYFWNVSS-G--ACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIW--KYPSLVKV 547 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t-~--~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw--d~~~~~~~ 547 (609)
++++. .++.|.+||+.. + +.+..+.. ...+..++|+|+|++|+++. ..++.|.+| |..+++..
T Consensus 255 ~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~-~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 255 YVSNR--GYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVN-QNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEEEE--TTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEE-TTTTEEEEEEECTTTCCEE
T ss_pred EEEeC--CCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEE-cCCCcEEEEEEeCCCCeEE
Confidence 77763 689999999973 2 44555554 34688999999999988864 356899999 54556544
No 157
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=9.2e-18 Score=172.83 Aligned_cols=237 Identities=9% Similarity=0.018 Sum_probs=174.6
Q ss_pred EEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE
Q psy4876 275 IDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 275 l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las 352 (609)
+++++++ +++++.++.|++||..+ +.............+..++|+|+|+++++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v 59 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVAS-------------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYV 59 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTT-------------------------TEEEEEEECSSCCSSCEEEECTTSSEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCC-------------------------CcEEEEEecCCCCCCceeEECCCCCEEEE
Confidence 4566665 55677899999999988 55444333322226789999999986654
Q ss_pred -EeCCCeEEEEeCCCCeeEEEecCCC------CceEEEEe--cCCEEEEEecC------------CeEEEEEcCCCC--e
Q psy4876 353 -GTSLGTVQLWDVSAKKKCRTMDGHD------VRVGALAW--NTYILSSGSRC------------GNIVHHDVRSRD--H 409 (609)
Q Consensus 353 -gs~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~--~~~~L~sgs~d------------g~I~iwd~~~~~--~ 409 (609)
+..++.|.+||+.+++.+..+..+. ..+..++| ++++|++++.+ +.|.+||+.++. .
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~ 139 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK 139 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccc
Confidence 4568999999999998887776432 23677888 57788888865 899999998742 1
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------------------------
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------------------------ 465 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------------------ 465 (609)
.+..+. +...+.+++|+|+|+ +++++. .|++||+.+++. +..+..+
T Consensus 140 ~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (349)
T 1jmx_B 140 PVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKY------TVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 209 (349)
T ss_dssp CSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCE------EEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred eeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCce------eccccccccCCccccCccceeeecCCCccee
Confidence 223333 334688999999999 555543 499999987732 2222111
Q ss_pred --------------------------------------------cccEEEEEEcC-CCCcEEEEEeccCCCeEEEEECCC
Q psy4876 466 --------------------------------------------QAAVKAIAWCP-WSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 466 --------------------------------------------~~~V~~l~~sp-~~~~llasggGs~Dg~I~iwd~~t 500 (609)
...+.+++|+| ++..++++ ++.|.+||+.+
T Consensus 210 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~ 284 (349)
T 1jmx_B 210 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQ 284 (349)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTT
T ss_pred EEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECcc
Confidence 12456778889 88655543 68999999999
Q ss_pred CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC
Q psy4876 501 GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH 553 (609)
Q Consensus 501 ~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h 553 (609)
++.+..+.....+.+++|++++++|+++ ..++.|.+||..+++.+..+...
T Consensus 285 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 285 RKLIKAANLDHTYYCVAFDKKGDKLYLG--GTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp TEEEEEEECSSCCCEEEECSSSSCEEEE--SBSSEEEEEETTTTEEEEEEECS
T ss_pred CeEEEEEcCCCCccceEECCCCCEEEEe--cCCCeEEEEeccccceeeeeecC
Confidence 9998888877778899999999999883 46799999999999988887654
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=3.7e-18 Score=174.67 Aligned_cols=240 Identities=12% Similarity=0.035 Sum_probs=179.5
Q ss_pred EEEEEecCCC--eEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC----CCCeEEEEEc
Q psy4876 272 LNLIDWSHFN--VLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG----NENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~--lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h----~~~V~~v~~s 344 (609)
+..++|+|++ ++++ ..++.|++||+.+ +.......+.+ ...+.+++|+
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~s 90 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVT-------------------------GETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTT-------------------------CCEEEEEECCBTTEEEECTTCEEEC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCC-------------------------CCeEeeEEcCCcccccccccceEEC
Confidence 4568999987 3333 3468999999987 54433333222 1267789999
Q ss_pred cCCCEEEEEe------------CCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 345 QEGYMLGVGT------------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 345 pdg~~Lasgs------------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
|+|++|+++. .++.|.+||+.+++.+..+.. ...+.+++| +++.|+++ ++.|.+||+.++ ..
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~-~~ 166 (337)
T 1pby_B 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG-TL 166 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT-EE
T ss_pred CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC-cE
Confidence 9999999886 579999999999888877764 455777888 56767776 689999999987 35
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCC------------------------cEEEEeCCCCCCCCCccceEeecCCc
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDN------------------------LLNIWSGVPGQHTFSTQPIHSLSRHQ 466 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~h~ 466 (609)
...+..+.. ...+.|+|+|.+++..+.++ .|.+||+.+++. . ...+..+.
T Consensus 167 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~----~-~~~~~~~~ 240 (337)
T 1pby_B 167 VEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM----A-MREVRIMD 240 (337)
T ss_dssp EEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE----E-EEEEEECS
T ss_pred eeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc----e-EeecCCCC
Confidence 555554331 11337899998765554332 468999988732 1 33344566
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
..+.+++|+|++..++++ ++.|++||+.+++.+..+.....+.+++|+|++++++++ ..++.|.+||+.+++.
T Consensus 241 ~~~~~~~~s~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG--GALGDLAAYDAETLEK 313 (337)
T ss_dssp SCEEEEEECTTSSEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE--SBSSEEEEEETTTCCE
T ss_pred CceeeEEECCCCCEEEEe-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE--cCCCcEEEEECcCCcE
Confidence 678899999999765553 689999999999999888877788999999999999885 4689999999999998
Q ss_pred EEEEeCC
Q psy4876 547 VAELHGH 553 (609)
Q Consensus 547 ~~~l~~h 553 (609)
+..+..+
T Consensus 314 ~~~~~~~ 320 (337)
T 1pby_B 314 KGQVDLP 320 (337)
T ss_dssp EEEEECG
T ss_pred EEEEEcC
Confidence 8888654
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.2e-18 Score=194.21 Aligned_cols=234 Identities=11% Similarity=-0.002 Sum_probs=169.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCeeEEEecCCC-CceEEEEecC-CEEEEEec---CCeEEEEEcCC-
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNT-YILSSGSR---CGNIVHHDVRS- 406 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~~~-~~L~sgs~---dg~I~iwd~~~- 406 (609)
+...|.+++|+|||++||+++. ||.++||++.+++.. .+..|. ..+..++|++ .++++++. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999766554 444454 6899999964 45666654 44456655543
Q ss_pred -CCeeEEEEccCCCCeEEEEEccCCC--EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 407 -RDHKVALLQNHTQEVCGLKWSPDGR--YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 407 -~~~~~~~~~~h~~~V~~l~~spdg~--~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
..... .+..+ ..+...+|+|||+ .+++++. +.+.+||+.++ +... +..+.. .+++|+|||+.++.
T Consensus 99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~~g------~~~~-l~~~~~--~~~~~spDG~~la~ 166 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE-DRVALYALDGG------GLRE-LARLPG--FGFVSDIRGDLIAG 166 (582)
T ss_dssp STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS-SCEEEEEEETT------EEEE-EEEESS--CEEEEEEETTEEEE
T ss_pred CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCC-CCceEEEccCC------cEEE-eecCCC--ceEEECCCCCEEEE
Confidence 22222 33322 2344678888886 3444444 45569999877 3332 222333 78999999976665
Q ss_pred EEec-cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 484 SGGG-TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 484 sggG-s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
++.. ...+.|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+.+|...+..+
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~ 243 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSY 243 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHH
T ss_pred EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhh
Confidence 4420 0117899999999887654445567899999999999995 33677 8999999998887 777888777777
Q ss_pred E--------EeCCCCEEEEEECCCCEEEEEc
Q psy4876 561 A--------MSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 561 ~--------~spdg~~L~s~s~Dg~I~iWdl 583 (609)
+ |+|||.++++++.|+++++|++
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7 9999999999999999999999
No 160
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.80 E-value=2e-18 Score=185.58 Aligned_cols=238 Identities=18% Similarity=0.191 Sum_probs=170.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCC----------eeEEE-----ecCCCCceEEEEe--cCCEEE----EE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAK----------KKCRT-----MDGHDVRVGALAW--NTYILS----SG 393 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~----------~~~~~-----l~~h~~~V~~l~~--~~~~L~----sg 393 (609)
...+..+++++++.+|++++.+| |+||+.... ..+.. ...+...|.+++| ++.+|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34678899999999999999988 888875311 01111 1135678999999 478888 78
Q ss_pred ecCCeEEEEEcCCC-----C-----eeEEEEccCCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 394 SRCGNIVHHDVRSR-----D-----HKVALLQNHTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 394 s~dg~I~iwd~~~~-----~-----~~~~~~~~h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
+.|+.|++||+.+. . ..+..+.+|...|.+++|+|+ +.+|++++.||+|++||++++ ..+...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~ 188 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTET------VKVCAT 188 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSS------EEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCC------cceeec
Confidence 88999999998653 1 124556679999999999997 889999999999999999987 455566
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------CCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------SQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
.+|...|.+++|+|+|. +|++|+ .|+.|++||++ ++....+..+ ..+.++.|++++.++++... .+|
T Consensus 189 ~~~~~~v~~v~wspdg~-~lasgs--~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~-~dg 263 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGK-QLAVGK--QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA-ADG 263 (434)
T ss_dssp ECGGGCEEEEEECTTSS-CEEEEE--TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE-TTC
T ss_pred cCCCCceeEEEEcCCCC-EEEEEc--CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc-CCC
Confidence 67889999999999985 455553 89999999998 6666555422 17899999998888766543 332
Q ss_pred ------eEEEEECCCCc-----eEEEEe-------CCCCCEEEEEEeCCCCEEEEEEC-CCCEEEEEcC
Q psy4876 535 ------QLIIWKYPSLV-----KVAELH-------GHSARVLNLAMSPDETTVLSAGA-DETLRLWKIF 584 (609)
Q Consensus 535 ------~I~Iwd~~~~~-----~~~~l~-------~h~~~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~ 584 (609)
.+++|++.... ....+. +...+-..+.+.++.+++++++. .+.|.|....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 48999997542 112221 11222233444477777766654 4456666654
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=1.7e-16 Score=165.39 Aligned_cols=260 Identities=12% Similarity=0.079 Sum_probs=176.5
Q ss_pred EEEEEecCCC--eEEEEcC----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN--VLAVALG----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~s 344 (609)
...++|+|++ +++++.+ +.|.+|++.... +....+.... +...+..+++
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-----------------------g~~~~~~~~~~~~~~p~~~~~- 107 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-----------------------GTLHLLNTQKTMGADPCYLTT- 107 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-----------------------TEEEEEEEEECSSSCEEEEEE-
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-----------------------CcEEEeeEeccCCCCcEEEEE-
Confidence 3458999997 4455554 799999876510 3445555554 5567788888
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCCCeeEEEe------cC--------CCCceEEEEe--cCCEEEEEe-cCCeEEEEEcCC
Q psy4876 345 QEGYMLGVGT-SLGTVQLWDVSAKKKCRTM------DG--------HDVRVGALAW--NTYILSSGS-RCGNIVHHDVRS 406 (609)
Q Consensus 345 pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l------~~--------h~~~V~~l~~--~~~~L~sgs-~dg~I~iwd~~~ 406 (609)
++++|+++. .++.|.+|++.....+..+ .+ +...+.+++| ++++|++++ .++.|.+|++..
T Consensus 108 -dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~ 186 (361)
T 3scy_A 108 -NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP 186 (361)
T ss_dssp -CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred -CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC
Confidence 888777776 5789999999754332211 11 1234577888 567555554 588999999876
Q ss_pred CCe------e------EEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEee---cCCcccEE
Q psy4876 407 RDH------K------VALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSL---SRHQAAVK 470 (609)
Q Consensus 407 ~~~------~------~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~ 470 (609)
... . ......+...+.+++|+|||+++++++ .++.|.+||+.++.. ..+..+ ..+.....
T Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~----~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 187 NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML----DEIQTVAADTVNAQGSG 262 (361)
T ss_dssp TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE----EEEEEEESCSSCCCCEE
T ss_pred CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce----EEeEEEecCCCCCCCcc
Confidence 432 1 122334556688999999999887777 589999999986521 122222 33345578
Q ss_pred EEEEcCCCCcEEEEEeccC-CCeEEEEECC--CCc--eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC--CC
Q psy4876 471 AIAWCPWSPNVLASGGGTA-DRHIYFWNVS--SGA--CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY--PS 543 (609)
Q Consensus 471 ~l~~sp~~~~llasggGs~-Dg~I~iwd~~--t~~--~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~--~~ 543 (609)
+++|+|+|+.++++.. . ++.|.+|++. +++ .+..+.....+..++|+|+|++|+++. ..++.|.+|++ .+
T Consensus 263 ~i~~spdg~~l~v~~~--~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~-~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 263 DIHLSPDGKYLYASNR--LKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVAC-RDTNVIQIFERDQAT 339 (361)
T ss_dssp EEEECTTSSEEEEEEC--SSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEE-TTTTEEEEEEECTTT
T ss_pred cEEECCCCCEEEEECC--CCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEE-CCCCCEEEEEEECCC
Confidence 9999999987777653 4 6899999996 455 444555555788999999999998864 36789999654 46
Q ss_pred CceEEEE-eCCCCCEEEEEEe
Q psy4876 544 LVKVAEL-HGHSARVLNLAMS 563 (609)
Q Consensus 544 ~~~~~~l-~~h~~~V~~l~~s 563 (609)
++..... ..+...+.||.|.
T Consensus 340 g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 340 GLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CCEEECSCCEECSSEEEEEEE
T ss_pred CcEeecceeeeCCCCeEEEEc
Confidence 6554332 1244578899886
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=4.2e-18 Score=194.43 Aligned_cols=280 Identities=10% Similarity=0.026 Sum_probs=190.1
Q ss_pred EEEEEecCCC-eEE-EEc---------CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEE
Q psy4876 272 LNLIDWSHFN-VLA-VAL---------GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCS 340 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~---------dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~ 340 (609)
+..++||||+ .|+ ++. ++.|++||+.+ +.......+ ...+.+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-------------------------g~~~~~~~l--~~~~~~ 114 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-------------------------GEFVRGNEL--PRPIQY 114 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-------------------------TEECCSSCC--CSSBCC
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-------------------------Cccccceec--Cccccc
Confidence 6689999997 444 443 58999999988 544110122 246889
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-cCCCCce-----------------EEEEe--cCCEEEEEecCC---
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-DGHDVRV-----------------GALAW--NTYILSSGSRCG--- 397 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-~~h~~~V-----------------~~l~~--~~~~L~sgs~dg--- 397 (609)
++|||||+.||++. ++.|++||+.+++..+.. .++...| .+++| ||+.|++++.|.
T Consensus 115 ~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~ 193 (719)
T 1z68_A 115 LCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI 193 (719)
T ss_dssp EEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS
T ss_pred ceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC
Confidence 99999999999886 689999999988765533 2333222 47889 678998887652
Q ss_pred -------------------------------eEEEEEcCCCCee--EE-----EEccCCCCeEEEEEccCCCEEEEEeCC
Q psy4876 398 -------------------------------NIVHHDVRSRDHK--VA-----LLQNHTQEVCGLKWSPDGRYLASGGND 439 (609)
Q Consensus 398 -------------------------------~I~iwd~~~~~~~--~~-----~~~~h~~~V~~l~~spdg~~lasgs~D 439 (609)
.|++||+.++... +. .+.+|...+.+++|+||++++++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~ 273 (719)
T 1z68_A 194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR 273 (719)
T ss_dssp CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence 7889999876321 11 123588889999999998877775433
Q ss_pred ----CcEEEEe----CCCCCCCCCccceEee----cCCcccEE-----EEEEcCCCCcEEEE-EeccCCCeEEEEECCCC
Q psy4876 440 ----NLLNIWS----GVPGQHTFSTQPIHSL----SRHQAAVK-----AIAWCPWSPNVLAS-GGGTADRHIYFWNVSSG 501 (609)
Q Consensus 440 ----g~I~iwd----~~~~~~~~~~~~~~~~----~~h~~~V~-----~l~~sp~~~~llas-ggGs~Dg~I~iwd~~t~ 501 (609)
..|++|| +.++ +....+ ..|...+. .++|+|+|..+++. +.......|.+||+.++
T Consensus 274 ~~~~~~l~~~d~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 274 VQNVSVLSICDFREDWQTW------DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp STTEEEEEEEEECSSSSSE------ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred ccCeEEEEEEcccCCCCCC------ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 2488999 7766 233233 35666666 78999999877663 32122347888888877
Q ss_pred ceeEEEc-CCCCeEEEEEcCCCCeEEEEEec---CCCeEEEEECCC--Cc-eEEEEe----CCCCCEEEEEEeCCCCEEE
Q psy4876 502 ACLDSID-TKSQVCALLWNSDYKELVSAHGF---AQNQLIIWKYPS--LV-KVAELH----GHSARVLNLAMSPDETTVL 570 (609)
Q Consensus 502 ~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~---~dg~I~Iwd~~~--~~-~~~~l~----~h~~~V~~l~~spdg~~L~ 570 (609)
+. ..+. ....+..+.++ +++.++..+.. .++.++||.+.. +. ....+. +|...+..+.|+||+++|+
T Consensus 348 ~~-~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~ 425 (719)
T 1z68_A 348 NA-IQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYA 425 (719)
T ss_dssp TC-EECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEE
T ss_pred ce-EecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEE
Confidence 63 3443 33467788777 88888876531 147788887653 32 233333 2667788999999998776
Q ss_pred E-EECC--CCEEEEEcCCCc
Q psy4876 571 S-AGAD--ETLRLWKIFEKV 587 (609)
Q Consensus 571 s-~s~D--g~I~iWdl~~~~ 587 (609)
. ++.+ ..+.+||+.+++
T Consensus 426 ~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 426 LVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp EEECCBSSCEEEEECSSSCC
T ss_pred EEcCCCCCCeEEEEECCCCC
Confidence 4 3333 468899987665
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=3.6e-17 Score=171.66 Aligned_cols=276 Identities=12% Similarity=0.052 Sum_probs=181.8
Q ss_pred eEEEEEecCCC-eEE-EEcC---CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 271 YLNLIDWSHFN-VLA-VALG---GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~s~d---g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
++..++|||++ .|+ +... ..|++||+.+ +....+... +......+.|+|
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-------------------------~~~~~l~~~-~~~~~~~~~~sp 90 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-------------------------QQAVQLTEG-KGDNTFGGFIST 90 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-------------------------TEEEECCCS-SCBCTTTCEECT
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCC-------------------------CcEEEeecC-CCCccccceECC
Confidence 35668899997 444 4332 3789999887 554433221 222233478999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEE---EEe------------------cCCEEEEE-----ecCCeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGA---LAW------------------NTYILSSG-----SRCGNI 399 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~---l~~------------------~~~~L~sg-----s~dg~I 399 (609)
||++|+.++.++.|.+||+.+++.......+...... +++ ++..++.+ ..+..|
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 9999999999999999999988766666544442222 211 12222222 345689
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCC--cccEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVK 470 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~ 470 (609)
.+||+.++. . ..+..+...+..+.|+| ++..|+.++.+ ..|++||+..+ . ...+..+ ...+.
T Consensus 171 ~~~d~~~g~-~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~------~-~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 171 IKVDIETGE-L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS------N-VRKIKEHAEGESCT 241 (396)
T ss_dssp EEEETTTCC-E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC------C-CEESSCCCTTEEEE
T ss_pred EEEECCCCc-E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC------c-eeEeeccCCCcccc
Confidence 999998764 2 33335677899999999 88877776654 36889998755 2 2233223 23578
Q ss_pred EEEEcCCCCcEEEEEec--cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcC-CCCeEEEEEe--------------cCC
Q psy4876 471 AIAWCPWSPNVLASGGG--TADRHIYFWNVSSGACLDSIDTKSQVCALLWNS-DYKELVSAHG--------------FAQ 533 (609)
Q Consensus 471 ~l~~sp~~~~llasggG--s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~-~g~~l~~~sG--------------~~d 533 (609)
.++|+|+|..+++.+.. ..++.|++||+.+++......... .. +.|++ +|+.++++.+ ..+
T Consensus 242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCC
T ss_pred ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCC
Confidence 89999999877766421 112559999999887654433322 33 89999 9998776431 134
Q ss_pred CeEEEEECCCCceEEEEeCCCC-----------CEEEEEEeCCCCEEEEEEC-CCCEEEEEcC
Q psy4876 534 NQLIIWKYPSLVKVAELHGHSA-----------RVLNLAMSPDETTVLSAGA-DETLRLWKIF 584 (609)
Q Consensus 534 g~I~Iwd~~~~~~~~~l~~h~~-----------~V~~l~~spdg~~L~s~s~-Dg~I~iWdl~ 584 (609)
..|++||..+++.. .+..|.. .+..++|+|||+.|+.++. ++...||.+.
T Consensus 320 ~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 320 PFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 78999999877643 3444443 2567899999998887765 5666666654
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.77 E-value=4.3e-16 Score=160.81 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=187.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------------------------CeEEEEeCCCCeeEEEec-CCCCceEEEEe--cC
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSL------------------------GTVQLWDVSAKKKCRTMD-GHDVRVGALAW--NT 387 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~d------------------------g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~--~~ 387 (609)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++-.....+++ ++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999999888777 479999999888877665 44567889999 47
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEE---------ccCCCCeEEEEEcc-CCCEEEEEe-CCCcEEEEeCCCCCCCCCc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALL---------QNHTQEVCGLKWSP-DGRYLASGG-NDNLLNIWSGVPGQHTFST 456 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~sp-dg~~lasgs-~Dg~I~iwd~~~~~~~~~~ 456 (609)
+++++...++.|++||.......+..+ ..+-....+|+++| +|.++++.+ .++.|++||.. +
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g------ 175 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G------ 175 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S------
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C------
Confidence 888888889999999986542244444 34455789999999 888888876 68999999943 4
Q ss_pred cceEeecC----------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC---CCCeEEEEEcCCCC
Q psy4876 457 QPIHSLSR----------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT---KSQVCALLWNSDYK 523 (609)
Q Consensus 457 ~~~~~~~~----------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~---~~~v~sl~~s~~g~ 523 (609)
..+..+.. +......|+++|++..++++. ..++.|++||..+|+.+..+.. ...+..++|+| +
T Consensus 176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d--~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g- 251 (329)
T 3fvz_A 176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD--RENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G- 251 (329)
T ss_dssp CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T-
T ss_pred CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE--CCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C-
Confidence 34444421 223478999999866788876 3789999999999999988853 34788999999 2
Q ss_pred eEEEEEe------cCCCeEEEEECCCCceEEEE---eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 524 ELVSAHG------FAQNQLIIWKYPSLVKVAEL---HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 524 ~l~~~sG------~~dg~I~Iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.++...| ..++.|++|++.+++.+..+ .++...+.+|+++|+|.++++...++.|++|++...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3333222 23568999999999998887 367778999999999988888888999999998753
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.75 E-value=1.7e-16 Score=182.12 Aligned_cols=276 Identities=10% Similarity=0.089 Sum_probs=181.4
Q ss_pred EEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEccCCC
Q psy4876 274 LIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWIQEGY 348 (609)
Q Consensus 274 ~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~spdg~ 348 (609)
.+.|+|++ +++.+ |+.|++||+.+ +....+.... ......+++|||||+
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~ 74 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEY-------------------------GNSSVFLENSTFDEFGHSINDYSISPDGQ 74 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTT-------------------------CCEEEEECTTTTTTCCSCCCEEEECTTSS
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCC-------------------------CceEEEEechhhhhhcccccceEECCCCC
Confidence 58999998 44444 99999999998 5544443322 111234589999999
Q ss_pred EEEEEeCC---------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC
Q psy4876 349 MLGVGTSL---------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH 417 (609)
Q Consensus 349 ~Lasgs~d---------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h 417 (609)
+|++++.+ +.+.+||+.+++.. .+..|...+...+| +|+.|+.+ .++.|++||+.++.....+..++
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~ 152 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGK 152 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCB
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCC
Confidence 99998876 56779999998754 46678888999999 57888877 46899999998764222222233
Q ss_pred CCCe-----------------EEEEEccCCCEEEEEeCCC------------------------------------cEEE
Q psy4876 418 TQEV-----------------CGLKWSPDGRYLASGGNDN------------------------------------LLNI 444 (609)
Q Consensus 418 ~~~V-----------------~~l~~spdg~~lasgs~Dg------------------------------------~I~i 444 (609)
...+ .++.|||||++||.++.|. .|++
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 3222 3589999999999876332 4788
Q ss_pred EeCCC---CCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCc----eeE--EE-
Q psy4876 445 WSGVP---GQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGA----CLD--SI- 507 (609)
Q Consensus 445 wd~~~---~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~----~~~--~~- 507 (609)
||+.+ +.. .....+. +|...+..++|+|+|+.++.... +..+..|++||+.+++ |.. .+
T Consensus 233 ~d~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~ 308 (740)
T 4a5s_A 233 VNTDSLSSVTN----ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI 308 (740)
T ss_dssp EETTSCCSSSC----CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE
T ss_pred EECCCCCCCCc----ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee
Confidence 88887 521 0222333 37778999999999974443321 1234579999999887 321 11
Q ss_pred -c-CCCC-----eEEEEEcCCCCeEE-EEEecCC--CeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECC--
Q psy4876 508 -D-TKSQ-----VCALLWNSDYKELV-SAHGFAQ--NQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGAD-- 575 (609)
Q Consensus 508 -~-~~~~-----v~sl~~s~~g~~l~-~~sG~~d--g~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D-- 575 (609)
. +... ...+.|+|||+.++ ..+ ..+ ..|++||...+... .+......|..+.. +|++.|+..+..
T Consensus 309 ~~~~~~~v~~~~~~~p~fspDG~~l~~~~s-~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~ 385 (740)
T 4a5s_A 309 EMSTTGWVGRFRPSEPHFTLDGNSFYKIIS-NEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYK 385 (740)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSEEEEEEE-CTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGG
T ss_pred eccCCceEccCcCCCceEcCCCCEEEEEEE-cCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCC
Confidence 2 2222 34789999999887 443 233 46888898776554 34333445655542 456655544432
Q ss_pred ---CCEEEEEcC
Q psy4876 576 ---ETLRLWKIF 584 (609)
Q Consensus 576 ---g~I~iWdl~ 584 (609)
+...||.+.
T Consensus 386 ~~~~~~~ly~v~ 397 (740)
T 4a5s_A 386 GMPGGRNLYKIQ 397 (740)
T ss_dssp GCTTCBEEEEEE
T ss_pred CCCceeEEEEEE
Confidence 345555543
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=6.2e-15 Score=148.18 Aligned_cols=235 Identities=15% Similarity=0.153 Sum_probs=174.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec------CCCCceEEEEe-c--CCEEEEEec-CCeEEEEEc
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD------GHDVRVGALAW-N--TYILSSGSR-CGNIVHHDV 404 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~-~--~~~L~sgs~-dg~I~iwd~ 404 (609)
-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+..+++ + +.++++... ++.|.+||.
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~ 107 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 107 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC
Confidence 3568899999999988888888999999987 56666664 24457888998 2 344544433 789999994
Q ss_pred CCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcE
Q psy4876 405 RSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 405 ~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~l 481 (609)
++ ..+..+. .+...+.+++++++|+++++...++.|.+||.. + ..+..+. .+...+.++++++++. +
T Consensus 108 -~g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g------~~~~~~~~~~~~~~p~~i~~~~~g~-l 177 (286)
T 1q7f_A 108 -YG-QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-G------NVLHKFGCSKHLEFPNGVVVNDKQE-I 177 (286)
T ss_dssp -TS-CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S------CEEEEEECTTTCSSEEEEEECSSSE-E
T ss_pred -CC-cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-C------CEEEEeCCCCccCCcEEEEECCCCC-E
Confidence 33 3444443 344678999999999988887788999999965 3 3344442 3445689999999884 6
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEEeCCC--C
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQN-QLIIWKYPSLVKVAELHGHS--A 555 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg-~I~Iwd~~~~~~~~~l~~h~--~ 555 (609)
+++. ..++.|++||. .++.+..+... ..+..++++++|..+++. ..++ .|.+|+. +++.+..+..+. .
T Consensus 178 ~v~~--~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 251 (286)
T 1q7f_A 178 FISD--NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD--NHNNFNLTIFTQ-DGQLISALESKVKHA 251 (286)
T ss_dssp EEEE--GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE--CSSSCEEEEECT-TSCEEEEEEESSCCS
T ss_pred EEEE--CCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEe--CCCCEEEEEECC-CCCEEEEEcccCCCC
Confidence 6665 36899999997 46666676543 478999999999877663 3465 9999994 566777665543 3
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.+.+++++|+|+++++ +.|+.|++|++....
T Consensus 252 ~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 252 QCFDVALMDDGSVVLA-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp CEEEEEEETTTEEEEE-ETTTEEEEEECSCCC
T ss_pred cceeEEECCCCcEEEE-CCCCeEEEEEccccc
Confidence 4789999999987776 679999999986543
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.2e-16 Score=183.52 Aligned_cols=242 Identities=12% Similarity=0.126 Sum_probs=172.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCc-----eEEEEe--cCCEEEEEecC---------CeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVR-----VGALAW--NTYILSSGSRC---------GNI 399 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V~~l~~--~~~~L~sgs~d---------g~I 399 (609)
....+++|+|||.+|+++ ||.|++||+.+++....+.+|... ...++| |++.|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999886 899999999999988888877643 223566 68888888876 667
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccE---------
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAV--------- 469 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V--------- 469 (609)
.+||+.++. ...+..|...+...+|||||+.||.+. |+.|++||+.++. ... +..++...+
T Consensus 95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~------~~~lt~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLP------SYRITWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSC------CEECCSCCBTTTEEESBCCHHH
T ss_pred EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCc------eEEEcCCCCccceecCcccccc
Confidence 899999873 445667788899999999999999985 6899999998773 221 112222222
Q ss_pred --------EEEEEcCCCCcEEEEEe-------------------------------cc--CCCeEEEEECCC---Cc--e
Q psy4876 470 --------KAIAWCPWSPNVLASGG-------------------------------GT--ADRHIYFWNVSS---GA--C 503 (609)
Q Consensus 470 --------~~l~~sp~~~~llasgg-------------------------------Gs--~Dg~I~iwd~~t---~~--~ 503 (609)
.++.|+|||+.|+.... |. ....|++||+.+ ++ .
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 35899999987665431 00 012688999998 73 2
Q ss_pred eEEEc-------CCCCeEEEEEcCCCCeEEEEEecC--CCeEEEEECCCCc----eE--EEE--eCCCCCEE-----EEE
Q psy4876 504 LDSID-------TKSQVCALLWNSDYKELVSAHGFA--QNQLIIWKYPSLV----KV--AEL--HGHSARVL-----NLA 561 (609)
Q Consensus 504 ~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~--dg~I~Iwd~~~~~----~~--~~l--~~h~~~V~-----~l~ 561 (609)
...+. ....+..++|+|||+.++...... +..|.+||..+++ +. ..+ .+|...|. .++
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~ 325 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH 325 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence 23333 334688999999999776654322 3479999998876 21 122 45666555 789
Q ss_pred EeCCCCEEE-EEEC-C--CCEEEEEcCCCcc
Q psy4876 562 MSPDETTVL-SAGA-D--ETLRLWKIFEKVK 588 (609)
Q Consensus 562 ~spdg~~L~-s~s~-D--g~I~iWdl~~~~~ 588 (609)
|+|||+.|+ ..+. + ..|++|++.++..
T Consensus 326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 326 FTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp ECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 999999877 6664 3 4678888876543
No 168
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=5.3e-16 Score=162.69 Aligned_cols=240 Identities=13% Similarity=0.050 Sum_probs=167.8
Q ss_pred EEEccCCCEEEEEeC-CC--eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 341 VAWIQEGYMLGVGTS-LG--TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 341 v~~spdg~~Lasgs~-dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
.+|+|||++|++++. +| .|.+||+.+++......++...+..+.| +++.|+.++.++.|++||+.++. ......
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~-~~~~~~ 119 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLE-ENVVYQ 119 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCC-EEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCc-ceeeee
Confidence 889999999999887 66 4888999998887777777666656667 68899999999999999999874 444455
Q ss_pred cCCCCeEEEE--EccCCCEEEEEe----------------------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 416 NHTQEVCGLK--WSPDGRYLASGG----------------------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 416 ~h~~~V~~l~--~spdg~~lasgs----------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
.+...+.... +++++.+++... .+..|++||+.++ + ...+..+...+..
T Consensus 120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~-~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------E-STVILQENQWLGH 192 (388)
T ss_dssp CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------C-EEEEEEESSCEEE
T ss_pred chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------c-eEEeecCCccccc
Confidence 5555554444 489999887432 3468999999987 2 3344456677899
Q ss_pred EEEcC-CCCcEEEEEeccC---CCeEEEEECCCCceeEEEcCC--CCeEEEEEcCCCCeEEEEEecCCC---eEEEEECC
Q psy4876 472 IAWCP-WSPNVLASGGGTA---DRHIYFWNVSSGACLDSIDTK--SQVCALLWNSDYKELVSAHGFAQN---QLIIWKYP 542 (609)
Q Consensus 472 l~~sp-~~~~llasggGs~---Dg~I~iwd~~t~~~~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg---~I~Iwd~~ 542 (609)
++|+| ++..++++..+.. ...|.++|+..+......... ..+..+.|+|+|+.|+..+....+ .|++||+.
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecC
Confidence 99999 9876666553111 347888898765543333333 247788999999988775432222 49999999
Q ss_pred CCce--EEEEeCCCCC---EEEEEEeCCCCEEEEE---------ECCCCEEEEEcCCCcc
Q psy4876 543 SLVK--VAELHGHSAR---VLNLAMSPDETTVLSA---------GADETLRLWKIFEKVK 588 (609)
Q Consensus 543 ~~~~--~~~l~~h~~~---V~~l~~spdg~~L~s~---------s~Dg~I~iWdl~~~~~ 588 (609)
+++. +..+.++... ...++|+|||+.|+.. ..+..|++||+.++..
T Consensus 273 ~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 273 TLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp TCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred CCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 8874 3333331110 1123799999988754 4567899999988654
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=2.4e-15 Score=157.36 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=163.6
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCC-CCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGE-SDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
+..++|+|++ +++++.+ .|.+|++. + +....+......+.+.+++|+|+|+
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-------------------------g~~~~~~~~~~~g~~~~~~~spdg~ 95 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSP-------------------------TEIVHEASHPIGGHPRANDADTNTR 95 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEET-------------------------TEEEEEEEEECCSSGGGGCTTSCCE
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCC-------------------------CCEEEeeEeecCCCCccEEECCCCC
Confidence 4568999997 4455555 99999986 5 4443333322123366789999998
Q ss_pred E--EEEEe-------------CCCeEEEEeCC-CCeeEEEec----CCCCceEEEEe--cCCEEEEEec-CCeEEEEEcC
Q psy4876 349 M--LGVGT-------------SLGTVQLWDVS-AKKKCRTMD----GHDVRVGALAW--NTYILSSGSR-CGNIVHHDVR 405 (609)
Q Consensus 349 ~--Lasgs-------------~dg~I~iwd~~-~~~~~~~l~----~h~~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~ 405 (609)
+ ++++. .+|.+.+|++. +++....+. .+...+.+++| ++++|++++. ++.|.+||+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 4 44553 68999999997 455544443 25567899999 5777777654 6799999998
Q ss_pred -CCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCC--CCCCCCCccceEeec----CCcc------c
Q psy4876 406 -SRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGV--PGQHTFSTQPIHSLS----RHQA------A 468 (609)
Q Consensus 406 -~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~--~~~~~~~~~~~~~~~----~h~~------~ 468 (609)
++... +..+. .|...+..++|+|||++|++++. ++.|.+|++. ++........+..+. +|.. .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 255 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLY 255 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSE
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccc
Confidence 55321 22333 24667999999999999888775 6899999875 331100000111221 1222 5
Q ss_pred EEEEE-EcCCCCcEEEEEeccCC----CeEEEEECC-CCceeE---EEc-CCCCeEEEEEcC---CCCeEEEEEecCCCe
Q psy4876 469 VKAIA-WCPWSPNVLASGGGTAD----RHIYFWNVS-SGACLD---SID-TKSQVCALLWNS---DYKELVSAHGFAQNQ 535 (609)
Q Consensus 469 V~~l~-~sp~~~~llasggGs~D----g~I~iwd~~-t~~~~~---~~~-~~~~v~sl~~s~---~g~~l~~~sG~~dg~ 535 (609)
+..++ |+|+|+.++++..+ .+ +.|.+|++. +++... .+. ....+..++|+| +|++|+++. ..++.
T Consensus 256 ~~~i~~~spdG~~l~v~~~~-~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~-~~~~~ 333 (365)
T 1jof_A 256 RADVCALTFSGKYMFASSRA-NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD-DQEGW 333 (365)
T ss_dssp EEEEEEECTTSSEEEEEEEE-SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC-SSSCE
T ss_pred cccEEEECCCCCEEEEECCC-CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE-cCCCe
Confidence 88999 99999877766532 22 289999996 666543 233 234567899999 899998863 34689
Q ss_pred EEEEECCCC
Q psy4876 536 LIIWKYPSL 544 (609)
Q Consensus 536 I~Iwd~~~~ 544 (609)
|.||++...
T Consensus 334 v~v~~~~~~ 342 (365)
T 1jof_A 334 LEIYRWKDE 342 (365)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEchh
Confidence 999998655
No 170
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=7.2e-15 Score=151.01 Aligned_cols=261 Identities=9% Similarity=0.092 Sum_probs=182.7
Q ss_pred EEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~ 348 (609)
|+++.|+++. ++.++.++.+++|.. .. ...+. +...+.+++|+++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~---~~~~~~~~~~~~~~~~~~~g~ 57 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTITA---------------------------EP---WLEISKKGLQLEGLNFDRQGQ 57 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEEC---------------------------EE---EEEEESSCCCEEEEEECTTSC
T ss_pred cceeeecCCccceeEEeecccCccccc---------------------------ce---eEEEeccCccccCcEECCCCC
Confidence 5567777764 444566778888821 11 22222 556789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC----CeEEEEEcCCCCeeEEEEc--cCCCC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC----GNIVHHDVRSRDHKVALLQ--NHTQE 420 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d----g~I~iwd~~~~~~~~~~~~--~h~~~ 420 (609)
+++++..++.|.+||..+++.......+...+.+++| ++.++++...+ +.|.+||..+.. ....+. .+...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~ 136 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYC 136 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCC
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCc
Confidence 8888888999999999887766555456778999999 46677766665 689999988764 222232 24467
Q ss_pred eEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 421 VCGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
+.+++++|+|+++++... .+.|+.||..++ + +..+..+...+..++|+|++..++++. +.++.|.
T Consensus 137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~------~-~~~~~~~~~~~~~i~~~~dg~~l~v~~--~~~~~i~ 207 (333)
T 2dg1_A 137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR------T-VTPIIQNISVANGIALSTDEKVLWVTE--TTANRLH 207 (333)
T ss_dssp EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC------C-EEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEE
T ss_pred ccceEECCCCCEEEEeccccccCCCceEEEEeCCCC------E-EEEeecCCCcccceEECCCCCEEEEEe--CCCCeEE
Confidence 999999999988777654 356777776544 1 222223334578999999987676665 3578999
Q ss_pred EEECCC-CceeEE--------EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCC------CEEE
Q psy4876 495 FWNVSS-GACLDS--------IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSA------RVLN 559 (609)
Q Consensus 495 iwd~~t-~~~~~~--------~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~------~V~~ 559 (609)
+||+.+ +..+.. +.....+..++++++|..+++.. .++.|.+||. .++.+..+..+.. .+.+
T Consensus 208 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~--~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~ 284 (333)
T 2dg1_A 208 RIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY--GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTH 284 (333)
T ss_dssp EEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE--TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCE
T ss_pred EEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEc--CCCEEEEECC-CCCEEEEEEcCCCccccccCcce
Confidence 999964 433321 11224678899999998776643 5789999997 5667777654433 6899
Q ss_pred EEEeCCCCEEEEEECC
Q psy4876 560 LAMSPDETTVLSAGAD 575 (609)
Q Consensus 560 l~~spdg~~L~s~s~D 575 (609)
++|+||+..|+.++.+
T Consensus 285 ~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 285 PQFIPGTNQLIICSND 300 (333)
T ss_dssp EEECTTSCEEEEEEEC
T ss_pred EEECCCCCEEEEEeCc
Confidence 9999998877766655
No 171
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=2.7e-15 Score=157.14 Aligned_cols=259 Identities=7% Similarity=0.046 Sum_probs=181.9
Q ss_pred EEEecCCC-eEE-EE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-----CCC
Q psy4876 274 LIDWSHFN-VLA-VA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-----GNE 336 (609)
Q Consensus 274 ~l~wsp~~-lla-~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----h~~ 336 (609)
.++|+|++ .+. +. .++.|.+||..+ .+......+. +..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-------------------------~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-------------------------LTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-------------------------CCEEEEEEECTTBCCBCC
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-------------------------CcEEEEEEcCccccccCC
Confidence 68999997 333 33 256799999887 3333222221 234
Q ss_pred CeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEE-ecCCCCceEEEEe-c-CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRT-MDGHDVRVGALAW-N-TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~-~-~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
....++|+|||++|+++.. ++.|.+||+.+++.+.. +.. ........+ + +..+++.+.||.+.+|++.......
T Consensus 109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 5778999999999998864 57999999999998887 553 222111222 2 3678889999999999987533333
Q ss_pred EE------EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC------C----cccEEEEEEc
Q psy4876 412 AL------LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR------H----QAAVKAIAWC 475 (609)
Q Consensus 412 ~~------~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h----~~~V~~l~~s 475 (609)
.. +..+...+ .+.+++++..++..+.++.|+++|+..... ..+..+.. + ......++|+
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCccccccccccCCeeEEEEe
Confidence 11 11222222 344567888888888899999999975421 11111110 0 0111237899
Q ss_pred CCCCcEEEEEe--cc------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--c
Q psy4876 476 PWSPNVLASGG--GT------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL--V 545 (609)
Q Consensus 476 p~~~~llasgg--Gs------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~--~ 545 (609)
|++..++++.. |. ..+.|.+||+.+++.+..+..+. +.+++|+|+|++|+++. . +.|.|||..++ +
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n--~-~~v~v~D~~t~~l~ 338 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLD--G-GNVNVYDISQPEPK 338 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEEC--S-SCEEEEECSSSSCE
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeC--C-CeEEEEECCCCcce
Confidence 99888877652 00 13589999999999999998888 99999999999888753 3 99999999999 9
Q ss_pred eEEEEeCCCCCEEEEEEeCCCC
Q psy4876 546 KVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 546 ~~~~l~~h~~~V~~l~~spdg~ 567 (609)
.+..+..+......++++|+|.
T Consensus 339 ~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 339 LLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEETTSCSSEEEEEECCCSC
T ss_pred eeEEeccCCCCcEEEEecCCCC
Confidence 9988877778889999999986
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=2.5e-14 Score=147.65 Aligned_cols=240 Identities=11% Similarity=0.132 Sum_probs=164.2
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCC---C--eEEEE
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSL---G--TVQLW 362 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~d---g--~I~iw 362 (609)
++.|++||+.+ +....+ ..+.+++|+|||++||.++.+ + .|.+|
T Consensus 42 ~~~l~~~d~~~-------------------------~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 42 ENTIVIENLKN-------------------------NARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEEEEETTT-------------------------CCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred cceEEEEeCCC-------------------------CceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 56899999987 554443 457899999999999987654 3 48888
Q ss_pred eCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---------------------------CeEEEEEcCCCCeeEEE
Q psy4876 363 DVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---------------------------GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 363 d~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---------------------------g~I~iwd~~~~~~~~~~ 413 (609)
|+.+++.......+ . +..++| +++.|+.++.+ ..|.+||+.++. .+..
T Consensus 91 ~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~ 167 (347)
T 2gop_A 91 DLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-VIEE 167 (347)
T ss_dssp ETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-EEEE
T ss_pred ECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-EEee
Confidence 98887766555433 3 899999 57777777632 579999998764 3233
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCCC-------cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGNDN-------LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+.. . .+..++|+||| +++++..++ ...||.+.++ ....+..+ ..+..+ +|+|..+++.+.
T Consensus 168 l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~l~~~-~~~~~~--spdg~~l~~~~~ 234 (347)
T 2gop_A 168 FEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDG-------KEEKMFEK-VSFYAV--DSDGERILLYGK 234 (347)
T ss_dssp EEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETT-------EEEEEEEE-ESEEEE--EECSSCEEEEEC
T ss_pred ecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCC-------ceEEeccC-cceeeE--CCCCCEEEEEEc
Confidence 433 3 78899999999 777776542 3344443333 23334334 455544 999987776653
Q ss_pred cc-----CCCeEEEEECCCCceeEEEcC-CCCeEE-EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 487 GT-----ADRHIYFWNVSSGACLDSIDT-KSQVCA-LLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 487 Gs-----~Dg~I~iwd~~t~~~~~~~~~-~~~v~s-l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
.. ....|.+|| +++....... ...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~ 306 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMG 306 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEE
T ss_pred cccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEe
Confidence 11 135788888 5554433333 346775 8999 87 5555 3478899999 876654 444456788999
Q ss_pred EEEeCCCCEEEEEECCCCE-EEEEcC
Q psy4876 560 LAMSPDETTVLSAGADETL-RLWKIF 584 (609)
Q Consensus 560 l~~spdg~~L~s~s~Dg~I-~iWdl~ 584 (609)
++|+| .++++++.++.. .||.+.
T Consensus 307 ~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 307 FDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEESS--SEEEEEECSSSCCEEEEES
T ss_pred eeeeC--cEEEEEcCCCChHHheEeC
Confidence 99999 688888887776 888876
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=4.4e-15 Score=167.60 Aligned_cols=282 Identities=13% Similarity=0.031 Sum_probs=185.1
Q ss_pred eeEEEEEecCCCeEEEEc----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeE------
Q psy4876 270 YYLNLIDWSHFNVLAVAL----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVC------ 339 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~------ 339 (609)
..+..++|++++++.+.. ++...||....+ +....+.. +...+.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~l~~--~~~~~~~~~~~~ 77 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRAD------------------------GAEESALP--APWNVRNRVFEY 77 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTT------------------------SCEEESSC--TTCCBCCCGGGT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCC------------------------CCcceeCC--CCcccccccccc
Confidence 357789999887554443 678999986331 22222211 333333
Q ss_pred ---EEEEc--cCCCE-EEEEeC-CCeEEEEeCC--CCeeEEEecC-----CCCceEEEEe--cCCEEEEEecC-------
Q psy4876 340 ---SVAWI--QEGYM-LGVGTS-LGTVQLWDVS--AKKKCRTMDG-----HDVRVGALAW--NTYILSSGSRC------- 396 (609)
Q Consensus 340 ---~v~~s--pdg~~-Lasgs~-dg~I~iwd~~--~~~~~~~l~~-----h~~~V~~l~~--~~~~L~sgs~d------- 396 (609)
.+.|+ |||+. |+.+.. +..|.+|++. .......+.. |...+..++| +++.|++++.+
T Consensus 78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~ 157 (662)
T 3azo_A 78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPS 157 (662)
T ss_dssp CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTT
T ss_pred CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCC
Confidence 55565 99988 776654 4567777765 2044555665 6778899999 57888888876
Q ss_pred ---CeEEEEEcCCCC----eeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCC--------cEEEEeCC-CCCCCCCccce
Q psy4876 397 ---GNIVHHDVRSRD----HKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDN--------LLNIWSGV-PGQHTFSTQPI 459 (609)
Q Consensus 397 ---g~I~iwd~~~~~----~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg--------~I~iwd~~-~~~~~~~~~~~ 459 (609)
..|++||+.+.. .....+. .+...+..++|+|||++|+.++.++ .|++||+. ++.. ....
T Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---~~~~ 234 (662)
T 3azo_A 158 DVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---ADTR 234 (662)
T ss_dssp CEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---EEEE
T ss_pred CceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---cccE
Confidence 589999998720 1344555 5667788899999999999887553 79999998 3410 0122
Q ss_pred EeecCCcccEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCCCC---------eEEEEEcCCCCeEEEE
Q psy4876 460 HSLSRHQAAVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTKSQ---------VCALLWNSDYKELVSA 528 (609)
Q Consensus 460 ~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~~~---------v~sl~~s~~g~~l~~~ 528 (609)
.....|...+..++|+|+|. +++++. .++ .|.+||+.+++.......+.. +..++|+++++.++++
T Consensus 235 ~l~~~~~~~~~~~~~spdg~-l~~~~~--~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~ 311 (662)
T 3azo_A 235 TLLGGPEEAIAQAEWAPDGS-LIVATD--RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH 311 (662)
T ss_dssp EEEEETTBCEEEEEECTTSC-EEEEEC--TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred EeCCCCCceEcceEECCCCe-EEEEEC--CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence 22334567899999999998 766653 566 778888777765544333221 4678999999988774
Q ss_pred EecCCCeEEEE--ECCCCceEEEEeCCCCCEEEE-EEeCCCCEEEEEECCCCEEE--EEcCCCc
Q psy4876 529 HGFAQNQLIIW--KYPSLVKVAELHGHSARVLNL-AMSPDETTVLSAGADETLRL--WKIFEKV 587 (609)
Q Consensus 529 sG~~dg~I~Iw--d~~~~~~~~~l~~h~~~V~~l-~~spdg~~L~s~s~Dg~I~i--Wdl~~~~ 587 (609)
. . +.++|| |..++. +..+..|...+..+ +++.+.-++++++.+....| ||+.+++
T Consensus 312 ~--~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 312 G--K-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp B--S-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred E--c-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3 5 888888 555554 67777887778777 55444334445565654444 4554544
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.1e-14 Score=152.61 Aligned_cols=261 Identities=10% Similarity=0.014 Sum_probs=182.1
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeC----------
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTS---------- 355 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~---------- 355 (609)
.|+.|++||..+ ++.. .++. +.. . .++|+|||++|+++..
T Consensus 29 ~d~~v~v~D~~t-------------------------~~~~--~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 29 TESRVHVYDYTN-------------------------GKFL--GMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp GGCEEEEEETTT-------------------------CCEE--EEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred ccCeEEEEECCC-------------------------CeEE--EEecCCCC-C-ceEECCCCCEEEEEEecccccccCCC
Confidence 367999999887 5443 3343 323 3 8999999999998863
Q ss_pred CCeEEEEeCCCCeeEEEecCC------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEE-EccCCCCeEEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGH------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVAL-LQNHTQEVCGL 424 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l 424 (609)
++.|.+||+.+.+.+..+... ......+++ ++++|+++.. ++.|.+||+.+. ..+.. +. +.. ...+
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-~~~~~~i~-~~~-~~~v 156 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-DYVEDVTA-AAG-CWSV 156 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT-EEEEEEGG-GTT-EEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC-cEEEEEec-CCC-ccee
Confidence 567999999998888877532 234556777 6888888864 589999999987 45555 33 222 2335
Q ss_pred EEccCC-CEEEEEeCCCcEEEEeCCCCCCCCCccce------EeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 425 KWSPDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPI------HSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 425 ~~spdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~------~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
.+.|++ ..+++.+.||.+.+|++.... +.. ..+..+..++ .+.+.+++..+++.. .++.|.++|
T Consensus 157 ~~~p~~~~~~~~~~~dg~~~~v~~~~~g-----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~v~v~d 227 (361)
T 2oiz_A 157 IPQPNRPRSFMTICGDGGLLTINLGEDG-----KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVS---YYGNVYSAD 227 (361)
T ss_dssp EECTTSSSEEEEEETTSSEEEEEECTTS-----SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEB---TTSEEEEEE
T ss_pred EEcCCCCeeEEEECCCCcEEEEEECCCC-----cEeeeccccceEcCCCCce-EEEecccCCEEEEEe---CCCeEEEEE
Confidence 677865 678888899999999986521 211 1122222222 233356665555543 688999999
Q ss_pred CCCCce--eEEEcCC-----------CCeEEEEEcCCCCeEEEEEe-c--------CCCeEEEEECCCCceEEEEeCCCC
Q psy4876 498 VSSGAC--LDSIDTK-----------SQVCALLWNSDYKELVSAHG-F--------AQNQLIIWKYPSLVKVAELHGHSA 555 (609)
Q Consensus 498 ~~t~~~--~~~~~~~-----------~~v~sl~~s~~g~~l~~~sG-~--------~dg~I~Iwd~~~~~~~~~l~~h~~ 555 (609)
+..+.. +..+... .....++|+++++.++++.. . ..+.|.+||..+++.+..+..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~- 306 (361)
T 2oiz_A 228 FSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD- 306 (361)
T ss_dssp CSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred ecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence 975542 2222211 11223789999999887643 0 14589999999999999998877
Q ss_pred CEEEEEEeCCCCEEEEEECCCCEEEEEcCCC--ccchh
Q psy4876 556 RVLNLAMSPDETTVLSAGADETLRLWKIFEK--VKSKK 591 (609)
Q Consensus 556 ~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~--~~~~k 591 (609)
+.+++|+|||++|++++. +.|.+||..++ +....
T Consensus 307 -p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 307 -ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRT 342 (361)
T ss_dssp -CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEE
T ss_pred -eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEE
Confidence 899999999999998886 99999999988 55443
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.67 E-value=2.4e-14 Score=163.38 Aligned_cols=243 Identities=10% Similarity=0.049 Sum_probs=174.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCC-----eEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCe----------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLG-----TVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGN---------- 398 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg-----~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~---------- 398 (609)
..+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++| +++.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 4688999999999999876543 8999999999876643322 23667889 6788888887765
Q ss_pred ------EEEEEcCCCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeC-----CCcEEEEeCCC------CCCCCCccc
Q psy4876 399 ------IVHHDVRSRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGN-----DNLLNIWSGVP------GQHTFSTQP 458 (609)
Q Consensus 399 ------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~-----Dg~I~iwd~~~------~~~~~~~~~ 458 (609)
|++|++.++... ...+. .|...+.++.|+|||++|+.++. +..|++||+.+ +. ..
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----~~ 278 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-----LK 278 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-----CC
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCc-----cc
Confidence 999999876422 22223 34566889999999999988765 57899999976 31 13
Q ss_pred eEeecCCcccEEEEEEcCCCCcEEEEEec-cCCCeEEEEECCCCce--eEEE-cCCC--CeEEEEEcCCCCeEEEEEecC
Q psy4876 459 IHSLSRHQAAVKAIAWCPWSPNVLASGGG-TADRHIYFWNVSSGAC--LDSI-DTKS--QVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 459 ~~~~~~h~~~V~~l~~sp~~~~llasggG-s~Dg~I~iwd~~t~~~--~~~~-~~~~--~v~sl~~s~~g~~l~~~sG~~ 532 (609)
...+..+...+.. .|+|+|..+++.+.. .....|.+||+.++.. ...+ .... .+..+.|++++..+++.. .
T Consensus 279 ~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~--~ 355 (710)
T 2xdw_A 279 WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL--H 355 (710)
T ss_dssp CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE--E
T ss_pred eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE--E
Confidence 4555566666554 488888877776531 1245799999988742 2333 3333 577899987666666643 5
Q ss_pred CC--eEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE-E---CCCCEEEEEcCCCc
Q psy4876 533 QN--QLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA-G---ADETLRLWKIFEKV 587 (609)
Q Consensus 533 dg--~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~-s---~Dg~I~iWdl~~~~ 587 (609)
++ .|.+|++.+++.+..+..+.+.|..++++|++..|+.. + ..++|.+||+.+++
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 46777877888888888888889999999999766533 3 24789999998765
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=4.6e-13 Score=148.07 Aligned_cols=289 Identities=11% Similarity=0.054 Sum_probs=202.3
Q ss_pred eEEEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc----
Q psy4876 271 YLNLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI---- 344 (609)
Q Consensus 271 ~v~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s---- 344 (609)
.+..+.++||+ +++++.++.|.+||+.. .....+.++........++|+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~-------------------------~t~~~v~~i~~G~~P~~ia~s~~~~ 252 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWM-------------------------KEPTTVAEIKIGSEARSIETSKMEG 252 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTS-------------------------SSCCEEEEEECCSEEEEEEECCSTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCC-------------------------CCCcEeEEEecCCCCceeEEccccC
Confidence 35578999997 56677889999999962 112334455444557899999
Q ss_pred cCCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC-----------CCceEEEEec---CCEEEEEecCCeEEEEEcCCCCe
Q psy4876 345 QEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH-----------DVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDH 409 (609)
Q Consensus 345 pdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h-----------~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~ 409 (609)
|||++++++.. ++.|.|+|..+.+.+..+... ..++..+... +.+++....+|.|.++|......
T Consensus 253 pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~ 332 (567)
T 1qks_A 253 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 332 (567)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc
Confidence 69998887765 489999999999888776521 2256777662 45666667789999999986542
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC-----CcccEEEEEEcCCCCcEEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR-----HQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~lla 483 (609)
.............++.|+|+|++|+++. .++.|.++|+.++ +.+..+.. |.+.-..+ ++|++..+++
T Consensus 333 ~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~------kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~ 405 (567)
T 1qks_A 333 LKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG------KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWA 405 (567)
T ss_dssp EEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT------EEEEEEECSSSSBCCTTCEEE-EETTTEEEEE
T ss_pred ceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC------cEEEEEeccCcCCCCccceee-ECCCCCcEEE
Confidence 2222223445677899999999987766 5789999999987 44433322 33222122 5887667777
Q ss_pred EEeccCCCeEEEEECCC-------CceeEEEcCCC-CeEEEEEcCCCCeEEEEEec-C----CCeEEEEECCCC-----c
Q psy4876 484 SGGGTADRHIYFWNVSS-------GACLDSIDTKS-QVCALLWNSDYKELVSAHGF-A----QNQLIIWKYPSL-----V 545 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t-------~~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~-~----dg~I~Iwd~~~~-----~ 545 (609)
++. -.++.|.++|..+ .+.+.++...+ .-.-+..+|+++++++.... . .++|.|||+.+. .
T Consensus 406 t~~-~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~ 484 (567)
T 1qks_A 406 TSH-MGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD 484 (567)
T ss_dssp EEB-SSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC
T ss_pred eCC-CCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC
Confidence 653 2468999999987 66788887654 33557889999999985411 1 459999999876 2
Q ss_pred e-EEEEe--------CCCCCEEEEEEeCCCCEEEEEE-----CCCCEEEEEcCCCccchhh
Q psy4876 546 K-VAELH--------GHSARVLNLAMSPDETTVLSAG-----ADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 546 ~-~~~l~--------~h~~~V~~l~~spdg~~L~s~s-----~Dg~I~iWdl~~~~~~~k~ 592 (609)
. +..+. .-..++.++.|+++|+.|..+. .++.|.|+|..+.+..+..
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 485 PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp CCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 2 23332 1235799999999999877653 3799999999987765443
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=1.9e-14 Score=162.44 Aligned_cols=239 Identities=10% Similarity=-0.052 Sum_probs=170.0
Q ss_pred CCCCeEEEEEccCCCEEEEE--eCCCeEEEEeCCCCeeEEEecCCCCceE---------EEEe----cCCE-EEEEe-cC
Q psy4876 334 GNENVCSVAWIQEGYMLGVG--TSLGTVQLWDVSAKKKCRTMDGHDVRVG---------ALAW----NTYI-LSSGS-RC 396 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg--s~dg~I~iwd~~~~~~~~~l~~h~~~V~---------~l~~----~~~~-L~sgs-~d 396 (609)
|...+..++|++++-+++.. ..++...||....+...+.+..|...+. ...| +++. |+.++ .+
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 78899999999876666666 5578999999765666777777766655 5545 3666 55554 35
Q ss_pred CeEEEEEcC--C-CCeeEEEEcc-----CCCCeEEEEEccCCCEEEEEeCC----------CcEEEEeCCC------CCC
Q psy4876 397 GNIVHHDVR--S-RDHKVALLQN-----HTQEVCGLKWSPDGRYLASGGND----------NLLNIWSGVP------GQH 452 (609)
Q Consensus 397 g~I~iwd~~--~-~~~~~~~~~~-----h~~~V~~l~~spdg~~lasgs~D----------g~I~iwd~~~------~~~ 452 (609)
..|.++++. . + ....+.. |...+.+++|+|||+.|++++.| ..|++||+.+ +
T Consensus 102 ~~l~~~~~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 177 (662)
T 3azo_A 102 QRLYAFEPDAPGGA--VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS-- 177 (662)
T ss_dssp CCEEEECTTSTTCC--CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG--
T ss_pred CeEEEEcCCCCCCC--CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC--
Confidence 677777776 2 3 2444554 66788999999999999998877 5899999987 4
Q ss_pred CCCccceEeec-CCcccEEEEEEcCCCCcEEEEEecc-----CCCeEEEEECC-CC---ceeEEEcC-CCCeEEEEEcCC
Q psy4876 453 TFSTQPIHSLS-RHQAAVKAIAWCPWSPNVLASGGGT-----ADRHIYFWNVS-SG---ACLDSIDT-KSQVCALLWNSD 521 (609)
Q Consensus 453 ~~~~~~~~~~~-~h~~~V~~l~~sp~~~~llasggGs-----~Dg~I~iwd~~-t~---~~~~~~~~-~~~v~sl~~s~~ 521 (609)
. ...+. .+...+..++|+|||+.|+++.... ....|++||+. ++ +....... ...+..+.|+||
T Consensus 178 ----~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd 252 (662)
T 3azo_A 178 ----A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD 252 (662)
T ss_dssp ----G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred ----c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence 2 23444 5566788899999998776655210 12589999999 57 44444443 468999999999
Q ss_pred CCeEEEEEecCCC--eEEEEECCCCceEEEEeCCCCC--------EEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 522 YKELVSAHGFAQN--QLIIWKYPSLVKVAELHGHSAR--------VLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 522 g~~l~~~sG~~dg--~I~Iwd~~~~~~~~~l~~h~~~--------V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|+.+++ +..++ .|.+||..+++....+..+... +..++|+|++.++++++. +.++||.+.
T Consensus 253 g~l~~~--~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 253 GSLIVA--TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SCEEEE--ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred CeEEEE--ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 995444 33566 6777777666654333333222 567899999999999998 999999543
No 178
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.62 E-value=1.2e-13 Score=137.13 Aligned_cols=240 Identities=11% Similarity=0.003 Sum_probs=167.7
Q ss_pred CeEEEEEccCCCEEE-EEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 337 NVCSVAWIQEGYMLG-VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 337 ~V~~v~~spdg~~La-sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
...+++++++|++++ +...++.|.+||..+.........+...+.+++++ +.++++.. ++.|.+||..... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~--~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN--QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC--CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce--Eee
Confidence 788999999998666 44677899999986654332222344567788884 56555554 8899999987652 222
Q ss_pred Ec-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 414 LQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 414 ~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
+. .....+.+++++++|+++++...++.|.+|+..+. ............+.++++++++. ++++.. .++.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~ 172 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNR 172 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC------SCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc------eeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCE
Confidence 32 23367899999999998887777889999976544 22222222334578899999885 666652 5789
Q ss_pred EEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 493 IYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
|.+||...+......... ..+..++++++|..+++ ...++.|.+|+............+...+.+++++++|.++++
T Consensus 173 i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 250 (270)
T 1rwi_B 173 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA 250 (270)
T ss_dssp EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE
T ss_pred EEEEecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE
Confidence 999998876654432222 57899999999965555 346889999998665443322234467899999999998888
Q ss_pred EECCCCEEEEEcCCCccch
Q psy4876 572 AGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~~~~ 590 (609)
...++.|+++++...+..+
T Consensus 251 ~~~~~~v~~~~~~~~~~~~ 269 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHHHHH 269 (270)
T ss_dssp EGGGTEEEEECCCGGGSCC
T ss_pred ECCCCEEEEEcCCCccccC
Confidence 8899999999998766543
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=4.6e-13 Score=135.35 Aligned_cols=223 Identities=10% Similarity=0.060 Sum_probs=165.8
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+.....+++|+|+|+ +++++..++.|.+||..++ ...+..+...+.++++ ++.++++...++.|.+||..++. .
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~-~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE-W 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC-E
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc-E
Confidence 456788999999998 7788888999999999876 6667777888999999 46777776667899999997664 2
Q ss_pred EEEEccC----CCCeEEEEEccCCCEEEEE----e-------------CCCcEEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 411 VALLQNH----TQEVCGLKWSPDGRYLASG----G-------------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 411 ~~~~~~h----~~~V~~l~~spdg~~lasg----s-------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
....... ...+..++++|+|+++++. + ..+.|+.++.. + .+..+..+....
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-------~~~~~~~~~~~~ 174 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-------TLSAPIRDRVKP 174 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-------CEEEEECCCSSE
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-------CEEEeecCCCCC
Confidence 2222211 2346789999999988873 2 13456666655 3 233344566678
Q ss_pred EEEEEcCCCCcEEEEEeccCCCeEEEEECC-CCce---eEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVS-SGAC---LDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~---~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..++|+|++..+ ++. +.++.|.+||+. ++.. ...+. ....+..++++++|+.+++. ++.|.+|+.. +
T Consensus 175 ~gi~~s~dg~~l-v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~----~~~v~~~~~~-g 246 (296)
T 3e5z_A 175 NGLAFLPSGNLL-VSD--TGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA----GDGVHVLTPD-G 246 (296)
T ss_dssp EEEEECTTSCEE-EEE--TTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE----TTEEEEECTT-S
T ss_pred ccEEECCCCCEE-EEe--CCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc----CCeEEEECCC-C
Confidence 899999999766 655 468999999997 5655 33332 22356789999999866552 7899999976 7
Q ss_pred ceEEEEeCCCCCEEEEEE-eCCCCEEEEEECCC
Q psy4876 545 VKVAELHGHSARVLNLAM-SPDETTVLSAGADE 576 (609)
Q Consensus 545 ~~~~~l~~h~~~V~~l~~-spdg~~L~s~s~Dg 576 (609)
+.+..+..+.. +.+++| +|+++.|++++.++
T Consensus 247 ~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~ 278 (296)
T 3e5z_A 247 DELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE 278 (296)
T ss_dssp CEEEEEECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred CEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence 78888887777 999999 58999999888764
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=1.1e-14 Score=152.54 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=162.2
Q ss_pred CeEEEEEccCCCEEEEEeCC---CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL---GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
.+.+++|+|||++|+.+... ..|.+||+.+++......++......+.| +++.|+.++.++.|++||+.++. ..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~-~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE-EQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC-EE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC-cE
Confidence 37788999999998877553 37889999888765544433333333667 68899999999999999998764 33
Q ss_pred EEEccCCCCeEE-------------------EEEccCCCEEEEE-----eCCCcEEEEeCCCCCCCCCccceEeecCCcc
Q psy4876 412 ALLQNHTQEVCG-------------------LKWSPDGRYLASG-----GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA 467 (609)
Q Consensus 412 ~~~~~h~~~V~~-------------------l~~spdg~~lasg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 467 (609)
.....+...... +.|+|+++.++.+ ..+..|++||+.++ +.. .+..+..
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g------~~~-~~~~~~~ 188 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETG------ELE-VIHQDTA 188 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTC------CEE-EEEEESS
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCC------cEE-eeccCCc
Confidence 333334332222 3567777766654 35678999999876 322 3334667
Q ss_pred cEEEEEEcC-CCCcEEEEEeccCC----CeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEec-CC--CeEE
Q psy4876 468 AVKAIAWCP-WSPNVLASGGGTAD----RHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGF-AQ--NQLI 537 (609)
Q Consensus 468 ~V~~l~~sp-~~~~llasggGs~D----g~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~-~d--g~I~ 537 (609)
.+..+.|+| ++..++++..+ .. ..|.+||+..++....... ...+..+.|+|+|+.|+.++.. .. +.|+
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred ccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 789999999 67656555421 22 5799999876654333232 1257889999999988776421 12 4599
Q ss_pred EEECCCCceEEEEeCCCCCEEEEEEeC-CCCEEEEEE----------------CCCCEEEEEcCCCcc
Q psy4876 538 IWKYPSLVKVAELHGHSARVLNLAMSP-DETTVLSAG----------------ADETLRLWKIFEKVK 588 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~L~s~s----------------~Dg~I~iWdl~~~~~ 588 (609)
+||+.+++....... .. .. +.|+| ||++|++++ .+..|++||+.++..
T Consensus 268 ~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 268 KANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 999988765433222 12 33 89999 999888765 347899999987653
No 181
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=1.1e-11 Score=124.34 Aligned_cols=271 Identities=11% Similarity=0.007 Sum_probs=185.6
Q ss_pred eeEEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccC
Q psy4876 270 YYLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQE 346 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spd 346 (609)
..+.+|++++++ ++.+.. ++.|.+||... ..... .+. +...+.++++.++
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~--------------------------~~~~~-~~~~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDG--------------------------KITEY-PLPTPDAKVMCLTISSD 67 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC--------------------------CEEEE-ECSSTTCCEEEEEECTT
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCC--------------------------CeEEe-cCCcccCceeeEEECCC
Confidence 357789999987 554554 68899999763 11111 112 4567899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCee-EEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKK-CRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
|.++++...++.|..||.. ++. ...+......+..++++ +.++++...++.|.+||. ++.........+...+.+
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence 9888777768899999986 332 22222345678889884 667777667889999998 443222223334567899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+++.++|.++++...++.|.+||. ++ .... .+..+...+.++++++++. ++++. ..++.|.+||. +++
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g------~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~--~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SG------DITEFKIPTPASGPVGITKGNDDA-LWFVE--IIGNKIGRITT-SGE 214 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TC------CEEEEECSSTTCCEEEEEECTTSS-EEEEE--TTTTEEEEECT-TCC
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CC------cEEEeeCCCCCCcceeEEECCCCC-EEEEc--cCCceEEEECC-CCc
Confidence 999999988887777789999998 55 2221 2333455688999999875 66554 25789999999 666
Q ss_pred eeEE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE--eCCCCCEEEEEEeCCCCEEEEEECCCCE
Q psy4876 503 CLDS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL--HGHSARVLNLAMSPDETTVLSAGADETL 578 (609)
Q Consensus 503 ~~~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~L~s~s~Dg~I 578 (609)
.... .. ....+.+++++++|..+++ ...++.|.+||. ++. +..+ ..+...+.++++ ++|.++++.. .+.|
T Consensus 215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l 288 (299)
T 2z2n_A 215 ITEFKIPTPNARPHAITAGAGIDLWFT--EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKI 288 (299)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEE--ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEE
T ss_pred EEEEECCCCCCCceeEEECCCCCEEEe--ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcE
Confidence 4432 12 2357899999999985554 335789999998 443 3333 345567999999 8888776654 5667
Q ss_pred EEEEcCCC
Q psy4876 579 RLWKIFEK 586 (609)
Q Consensus 579 ~iWdl~~~ 586 (609)
..++..+.
T Consensus 289 ~~~~~~~~ 296 (299)
T 2z2n_A 289 GKLTLIKD 296 (299)
T ss_dssp EEEEEC--
T ss_pred EEEEcCcc
Confidence 77776543
No 182
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.61 E-value=1.1e-12 Score=135.23 Aligned_cols=235 Identities=13% Similarity=0.101 Sum_probs=168.9
Q ss_pred eEEEEEecCCC-eEEEEcCC-------------------------eEEEEeCCCCCCCceEEecCCcccccccccccccc
Q psy4876 271 YLNLIDWSHFN-VLAVALGG-------------------------SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR 324 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg-------------------------~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (609)
.+..|++++++ ++++..++ .|++||..+ +
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-------------------------g 79 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-------------------------A 79 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-------------------------C
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-------------------------C
Confidence 47889999987 55554443 689999876 5
Q ss_pred ceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-eEEEe---------cCCCCceEEEEec---CCEEE
Q psy4876 325 AIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-KCRTM---------DGHDVRVGALAWN---TYILS 391 (609)
Q Consensus 325 ~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-~~~~l---------~~h~~~V~~l~~~---~~~L~ 391 (609)
.+.......+-..+..|+++++|+++++...++.|++||..... .+..+ .++-.....++++ +.+++
T Consensus 80 ~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv 159 (329)
T 3fvz_A 80 EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFV 159 (329)
T ss_dssp CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEE
T ss_pred eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEE
Confidence 54332221244578999999999988888888999999986542 55555 3445578899995 46666
Q ss_pred EEe-cCCeEEEEEcCCCCeeEEEEcc----------CCCCeEEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccce
Q psy4876 392 SGS-RCGNIVHHDVRSRDHKVALLQN----------HTQEVCGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPI 459 (609)
Q Consensus 392 sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~~~V~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 459 (609)
+.+ .++.|.+||.. + ..+..+.. +-....+|+++|+ +.++++...++.|++||..++ +.+
T Consensus 160 ~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G------~~~ 231 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK------EFV 231 (329)
T ss_dssp EECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC------CEE
T ss_pred EeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC------cEE
Confidence 765 68999999954 3 34444432 2234899999998 777777778899999999877 555
Q ss_pred Eee--cCCcccEEEEEEcCCCCcEEEEEe-----ccCCCeEEEEECCCCceeEEEc----CCCCeEEEEEcCCCCeEEEE
Q psy4876 460 HSL--SRHQAAVKAIAWCPWSPNVLASGG-----GTADRHIYFWNVSSGACLDSID----TKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 460 ~~~--~~h~~~V~~l~~sp~~~~llasgg-----Gs~Dg~I~iwd~~t~~~~~~~~----~~~~v~sl~~s~~g~~l~~~ 528 (609)
..+ ..+...+.+++|+| + .++++.+ ...+..|++||+.+++.+..+. ....+..++++++|..+++
T Consensus 232 ~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva- 308 (329)
T 3fvz_A 232 REIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG- 308 (329)
T ss_dssp EEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE-
T ss_pred EEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE-
Confidence 555 34556788999999 3 3444332 1235689999999999998884 2346899999999954444
Q ss_pred EecCCCeEEEEECC
Q psy4876 529 HGFAQNQLIIWKYP 542 (609)
Q Consensus 529 sG~~dg~I~Iwd~~ 542 (609)
...++.|++|+..
T Consensus 309 -d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 309 -DAHTNTVWKFTLT 321 (329)
T ss_dssp -ESSSCCEEEEEEE
T ss_pred -ECCCCEEEEEeCC
Confidence 4478899999864
No 183
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.61 E-value=7.3e-13 Score=132.92 Aligned_cols=232 Identities=11% Similarity=0.136 Sum_probs=163.9
Q ss_pred eEEEEEecCCC-eEEE-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee----cCCCCeEEEEEc
Q psy4876 271 YLNLIDWSHFN-VLAV-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL----EGNENVCSVAWI 344 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~h~~~V~~v~~s 344 (609)
....|++++++ ++++ ..++.|++||... .....+... .+...+.++++.
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g-------------------------~~~~~~~~~~~~~~~~~~p~~i~~~ 85 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG-------------------------RFKFQFGECGKRDSQLLYPNRVAVV 85 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTS-------------------------CEEEEECCBSSSTTCBSSEEEEEEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCC-------------------------cEEEEecccCCCcccccCceEEEEE
Confidence 36778999986 4444 4578999999764 221111110 133568899994
Q ss_pred -cCCCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEc--cC
Q psy4876 345 -QEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQ--NH 417 (609)
Q Consensus 345 -pdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~--~h 417 (609)
+++.++++... ++.|.+|| .+++.+..+.. +...+..+++ +++++++...++.|.+||.... .+..+. .+
T Consensus 86 ~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~ 162 (286)
T 1q7f_A 86 RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKH 162 (286)
T ss_dssp TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTT
T ss_pred cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCc
Confidence 67766665543 78999999 56677776643 4467889999 4677777778899999997532 444443 45
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--cccEEEEEEcCCCCcEEEEEeccCCC-eEE
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--QAAVKAIAWCPWSPNVLASGGGTADR-HIY 494 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~llasggGs~Dg-~I~ 494 (609)
...+.+|+++++|+++++...++.|++||... ..+..+..+ ...+..++++++| .++++.. .++ .|.
T Consensus 163 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~--~~~~~i~ 232 (286)
T 1q7f_A 163 LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-------QYLRQIGGEGITNYPIGVGINSNG-EILIADN--HNNFNLT 232 (286)
T ss_dssp CSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-------CEEEEESCTTTSCSEEEEEECTTC-CEEEEEC--SSSCEEE
T ss_pred cCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-------CEEEEEccCCccCCCcEEEECCCC-CEEEEeC--CCCEEEE
Confidence 56789999999999888877889999999753 344445333 3578999999988 5666653 454 999
Q ss_pred EEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 495 FWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
+||. +++.+..+..+ ..+.+++++++|+.+++ . .++.|++|++...
T Consensus 233 ~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~--~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 233 IFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-S--KDYRLYIYRYVQL 281 (286)
T ss_dssp EECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-E--TTTEEEEEECSCC
T ss_pred EECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-C--CCCeEEEEEcccc
Confidence 9995 56777666543 24789999999975555 3 5899999998654
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=3.1e-12 Score=141.50 Aligned_cols=268 Identities=10% Similarity=0.050 Sum_probs=193.3
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLW 362 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iw 362 (609)
++...++.|.++|..+ +++. .++.....+..+.|+|||++|++++.++.|.+|
T Consensus 171 V~~~~~~~V~viD~~t-------------------------~~v~--~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~vi 223 (567)
T 1qks_A 171 VTLRDAGQIALIDGST-------------------------YEIK--TVLDTGYAVHISRLSASGRYLFVIGRDGKVNMI 223 (567)
T ss_dssp EEETTTTEEEEEETTT-------------------------CCEE--EEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred EEeCCCCeEEEEECCC-------------------------CeEE--EEEeCCCCccceEECCCCCEEEEEcCCCeEEEE
Confidence 3445578999999988 5443 334434567799999999999999999999999
Q ss_pred eCC--CCeeEEEecCCCCceEEEEec------CCEEEEEe-cCCeEEEEEcCCCCeeEEEEcc----------C-CCCeE
Q psy4876 363 DVS--AKKKCRTMDGHDVRVGALAWN------TYILSSGS-RCGNIVHHDVRSRDHKVALLQN----------H-TQEVC 422 (609)
Q Consensus 363 d~~--~~~~~~~l~~h~~~V~~l~~~------~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h-~~~V~ 422 (609)
|+. +++.+..+.... ....++|+ +++++++. .++.|.++|..+.+ .+..+.. | ...+.
T Consensus 224 D~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 224 DLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp ETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEE
T ss_pred ECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceE
Confidence 996 778888777543 34667775 56666655 56999999998864 4544432 1 12678
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
.+..++++..+ +....+|.|.++|...... ..+..+ .......++.|+|++++++++.. .++.|.++|+.++
T Consensus 302 ~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~i-~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~ 374 (567)
T 1qks_A 302 AILASHYRPEFIVNVKETGKILLVDYTDLNN----LKTTEI-SAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEG 374 (567)
T ss_dssp EEEECSSSSEEEEEETTTTEEEEEETTCSSE----EEEEEE-ECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTT
T ss_pred EEEEcCCCCEEEEEecCCCeEEEEecCCCcc----ceeeee-eccccccCceECCCCCEEEEEeC--CCCeEEEEECCCC
Confidence 89999976654 4445679999999876521 112222 23345678999999988888774 6889999999999
Q ss_pred ceeEEEcC-CCCe---EEEE-EcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEEeCCCCCEEEEEEeCCCCEE
Q psy4876 502 ACLDSIDT-KSQV---CALL-WNSDYKELVSAHGFAQNQLIIWKYPS-------LVKVAELHGHSARVLNLAMSPDETTV 569 (609)
Q Consensus 502 ~~~~~~~~-~~~v---~sl~-~s~~g~~l~~~sG~~dg~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L 569 (609)
+.+..+.. .... ..+. ++|++..++++....++.|.++|..+ ++.+..+......-..|.++|++++|
T Consensus 375 kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l 454 (567)
T 1qks_A 375 KLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYL 454 (567)
T ss_dssp EEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEE
T ss_pred cEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeE
Confidence 98887766 3211 1222 58886666554434578999999987 77888887654444567899999999
Q ss_pred EEEEC-------CCCEEEEEcCCC
Q psy4876 570 LSAGA-------DETLRLWKIFEK 586 (609)
Q Consensus 570 ~s~s~-------Dg~I~iWdl~~~ 586 (609)
.+... .++|.++|+.+.
T Consensus 455 ~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 455 YVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEECTTCSSHHHHTCEEEEEGGGC
T ss_pred EEecCCCCCcccCceEEEEECCcc
Confidence 88763 359999999876
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.58 E-value=5.6e-14 Score=159.97 Aligned_cols=241 Identities=9% Similarity=-0.046 Sum_probs=165.6
Q ss_pred CCCCeEEEEEccCCCEEEEE-----eCCCeEEEEeCCCCeeEEEecCCCCce--EEEEe--cCCEEEEEecCCe------
Q psy4876 334 GNENVCSVAWIQEGYMLGVG-----TSLGTVQLWDVSAKKKCRTMDGHDVRV--GALAW--NTYILSSGSRCGN------ 398 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasg-----s~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~--~~~~L~sgs~dg~------ 398 (609)
|...+.+++|||||++||.+ +.+..|++||+.+++.+. ..+...+ ..++| ++..|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 34468999999999999854 334689999999987641 1122222 67889 6788888888765
Q ss_pred -------EEEEEcCCCCe---eEEEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecC
Q psy4876 399 -------IVHHDVRSRDH---KVALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSR 464 (609)
Q Consensus 399 -------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~ 464 (609)
|++|++.++.. .+.....|...+.++.|+|||++|+.++.++ .|++||..++ ....+..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~ 269 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVK 269 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeec
Confidence 99999987642 2223334556789999999999998887766 6777765544 2344445
Q ss_pred CcccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCCce---eEEEcCC--CCeEEEEEcCCCCeEEEEEecCCCeEEE
Q psy4876 465 HQAAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSGAC---LDSIDTK--SQVCALLWNSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 465 h~~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~~~---~~~~~~~--~~v~sl~~s~~g~~l~~~sG~~dg~I~I 538 (609)
+...+....| +++. +++... +..++.|.+||+.++.. ...+... ..+..++|+ ++..+++ ...++..+|
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~--~~~dg~~~l 344 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE--YLKDATSEV 344 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE--EEETTEEEE
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE--EEECCEEEE
Confidence 5556666667 6676 666542 11368999999987763 3334332 357888888 5555555 336888777
Q ss_pred EECC-CCceEEEEeCC-CCCEEEEEEeCCCCEEEEEE----CCCCEEEEEcCCCcc
Q psy4876 539 WKYP-SLVKVAELHGH-SARVLNLAMSPDETTVLSAG----ADETLRLWKIFEKVK 588 (609)
Q Consensus 539 wd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~L~s~s----~Dg~I~iWdl~~~~~ 588 (609)
|.+. .+..+..+..+ .+.|..++++|++..|+... .+++|++||+.+++.
T Consensus 345 ~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 345 RVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 7654 45566666655 66788899999998776332 347899999987653
No 186
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=1.7e-12 Score=148.14 Aligned_cols=241 Identities=11% Similarity=0.025 Sum_probs=168.6
Q ss_pred eeEEEEEecCCC-eEEEE-c-CC----eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVA-L-GG----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s-~-dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .|+.+ . +| .|++||+.+ +..... .+. ...+.+++
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-------------------------g~~~~~-~~~-~~~~~~~~ 177 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-------------------------AKELPD-VLE-RVKFSCMA 177 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-------------------------TEEEEE-EEE-EECSCCEE
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-------------------------CCCCcc-ccc-CcccceEE
Confidence 568899999997 55533 2 23 899999998 554432 221 22367899
Q ss_pred EccCCCEEEEEeCCCe----------------EEEEeCCCCee--EEEe--cCCCCceEEEEe--cCCEEEEEec-----
Q psy4876 343 WIQEGYMLGVGTSLGT----------------VQLWDVSAKKK--CRTM--DGHDVRVGALAW--NTYILSSGSR----- 395 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~----------------I~iwd~~~~~~--~~~l--~~h~~~V~~l~~--~~~~L~sgs~----- 395 (609)
|+|||+.|+.++.++. |.+|++.+++. ...+ ..|...+..+.| ++++|+.++.
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 9999999999888765 99999988652 2222 335566788888 5777777664
Q ss_pred CCeEEEEEcCC------CCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecCC
Q psy4876 396 CGNIVHHDVRS------RDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 396 dg~I~iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
+..|++||+.+ +......+..+...+.. .|+++|..|+..+.++ .|.+||+.++.. .....+..|
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~----~~~~~l~~~ 332 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE----SKWKVLVPE 332 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc----ccceeccCC
Confidence 56899999986 43235556666666655 5889999888776643 599999987621 123444445
Q ss_pred cc--cEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEE--ecCCCeEEE
Q psy4876 466 QA--AVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAH--GFAQNQLII 538 (609)
Q Consensus 466 ~~--~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~s--G~~dg~I~I 538 (609)
.. .+..++|++++ .++++.. .|+ .|++||+.+|+.+..+..+ ..+..+.+++++..++... ....+.|++
T Consensus 333 ~~~~~~~~~~~~~~~-~lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 333 HEKDVLEWVACVRSN-FLVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp CSSCEEEEEEEETTT-EEEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred CCCCeEEEEEEEcCC-EEEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEE
Confidence 43 68889998644 5666653 566 5777888788877777654 4678899999998776542 234678999
Q ss_pred EECCCCc
Q psy4876 539 WKYPSLV 545 (609)
Q Consensus 539 wd~~~~~ 545 (609)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998876
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.57 E-value=4.3e-13 Score=138.25 Aligned_cols=229 Identities=10% Similarity=0.084 Sum_probs=150.4
Q ss_pred EEEEEecCCC-eEE-EEcC---C--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 272 LNLIDWSHFN-VLA-VALG---G--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 272 v~~l~wsp~~-lla-~s~d---g--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
+..+.||||+ .|+ ++.+ + .|++|++.+ +....+... .. +.+++|+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-------------------------g~~~~l~~~--~~-~~~~~ws 112 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-------------------------LSSKKILEA--KN-IRSLEWN 112 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-------------------------TEEEEEEEE--SE-EEEEEEC
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-------------------------CceEEEEcC--CC-ccceeEC
Confidence 5678999997 444 4432 3 488888877 555555443 23 9999999
Q ss_pred cCCCEEEEEeCC---------------------------CeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEec
Q psy4876 345 QEGYMLGVGTSL---------------------------GTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSR 395 (609)
Q Consensus 345 pdg~~Lasgs~d---------------------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~ 395 (609)
|||+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.| ++ +++++..
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 999999887642 5799999998877455554 3 7788888 45 6666655
Q ss_pred CC-------eEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC--------CcEEEEeCCCCCCCCCccceE
Q psy4876 396 CG-------NIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND--------NLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 396 dg-------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D--------g~I~iwd~~~~~~~~~~~~~~ 460 (609)
++ ...+|.+.++ . ...+..+ ..+..+ +|||++|+.++.+ ..|++|| ++ +...
T Consensus 190 ~~~~~~~~~~~~l~~~d~~-~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~------~~~~ 256 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWEDG-K-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GK------EVMG 256 (347)
T ss_dssp CCSSCCSSCCEEEEEEETT-E-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SS------CEEE
T ss_pred ccccccccccccEEEeCCC-c-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CC------ceEe
Confidence 42 3344444433 2 3334334 455544 9999999887754 3688888 44 3333
Q ss_pred eecCCcccEEE-EEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeE-EE
Q psy4876 461 SLSRHQAAVKA-IAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL-II 538 (609)
Q Consensus 461 ~~~~h~~~V~~-l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I-~I 538 (609)
....+...+.. +.|+ ++ +++++. .++.+++| +.+++....+.....+.++.|++ ..+++.. .++.. .|
T Consensus 257 l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~--~~~~~~~l 326 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-GK--VYFTLF--EEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKE--TATRLREL 326 (347)
T ss_dssp SSTTCCSEEEEEEEET-TE--EEEEEE--ETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEE--CSSSCCEE
T ss_pred ccccCCcccCCccEEc-Cc--EEEEEe--cCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEc--CCCChHHh
Confidence 34456677886 9999 76 666653 78899999 87777655555666789999999 4555433 34433 66
Q ss_pred EECCCCceEEEEeCCCCC
Q psy4876 539 WKYPSLVKVAELHGHSAR 556 (609)
Q Consensus 539 wd~~~~~~~~~l~~h~~~ 556 (609)
|.+. ++ ...+..|...
T Consensus 327 ~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 327 FTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEES-SS-EEECCCTTST
T ss_pred eEeC-Cc-EEEeccccHh
Confidence 6655 44 4456655543
No 188
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.56 E-value=5.4e-13 Score=136.88 Aligned_cols=237 Identities=10% Similarity=0.064 Sum_probs=171.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
..|.+++|++++..++....++.+++| .++....+..+...+.+++| ++.+++++..++.|.+||..++. ....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EEEE
Confidence 456778899988777777788899999 35667777778788899999 46777788889999999998764 3333
Q ss_pred EccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeec--CCcccEEEEEEcCCCCcEEEEEec
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLS--RHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~llasggG 487 (609)
...+...+.+++|+++|+++++...+ +.|.+||..++ .....+. .+...+.+++++|++. ++++..+
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~ 154 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD------NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFR 154 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC------SCEEEECSSSSCCCEEEEEECTTSC-EEEEECC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC------EEEEEEccCccCCcccceEECCCCC-EEEEecc
Confidence 33566789999999999988877766 68999998876 2221221 2445789999999984 5554421
Q ss_pred ----cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE--------EeCCC
Q psy4876 488 ----TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS-LVKVAE--------LHGHS 554 (609)
Q Consensus 488 ----s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~-~~~~~~--------l~~h~ 554 (609)
...+.|..||..+++..........+..++|+++++.++++. ..++.|.+|+..+ +..+.. +.++
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~- 232 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTE-TTANRLHRIALEDDGVTIQPFGATIPYYFTGH- 232 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEE-GGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-
T ss_pred ccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEe-CCCCeEEEEEecCCCcCcccccceEEEecCCC-
Confidence 013667777776665544333344688999999999776653 3578999999863 332221 1222
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
..+..++++++|.++++...++.|.+|+...
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g 263 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG 263 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTTS
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCCC
Confidence 4678899999999888888889999999843
No 189
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=2.1e-12 Score=133.03 Aligned_cols=239 Identities=8% Similarity=-0.008 Sum_probs=166.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEe-cCCeEEEEEcCCCCeeEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGS-RCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs-~dg~I~iwd~~~~~~~~~~ 413 (609)
....++.+. +++.+++...++.|.+||..+++.+..+. .......+++ .+..++++. .++.|.+||..+.. ....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~-~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE-ITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE-EEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe-EEEE
Confidence 446677774 34455555567899999999999988885 3466778888 333555555 78999999999863 4444
Q ss_pred EccCC-----CCeEEEEEccCCCEEEEEe--CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 414 LQNHT-----QEVCGLKWSPDGRYLASGG--NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 414 ~~~h~-----~~V~~l~~spdg~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
+.... .....+++ . +..|+++. .++.|.+||+.++ +.+..+... .....++++|+|. +++++.
T Consensus 121 i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~g-~~p~~i~~~~dG~-l~v~~~ 190 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETD------KVVDELTIG-IQPTSLVMDKYNK-MWTITD 190 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTT------EEEEEEECS-SCBCCCEECTTSE-EEEEBC
T ss_pred EEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCC------eEEEEEEcC-CCccceEEcCCCC-EEEEEC
Confidence 44322 14567777 3 44555444 4889999999987 455555433 2346889999885 555543
Q ss_pred ccC--------CCeEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE--EeCCC
Q psy4876 487 GTA--------DRHIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE--LHGHS 554 (609)
Q Consensus 487 Gs~--------Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~--l~~h~ 554 (609)
+.. .+.|.+||..+++....+.. ......++|+|+++.++++. +.|.+||..+++.... +..+.
T Consensus 191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~----~~v~~~d~~t~~~~~~~~~~~~~ 266 (328)
T 3dsm_A 191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN----NDIWRMPVEADRVPVRPFLEFRD 266 (328)
T ss_dssp CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES----SSEEEEETTCSSCCSSCSBCCCS
T ss_pred CCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc----cEEEEEECCCCceeeeeeecCCC
Confidence 211 27899999999998877765 34789999999999998852 3899999988765321 12224
Q ss_pred CCEEEEEEeC-CCCEEEEE----ECCCCEEEEEcCCCccchhh
Q psy4876 555 ARVLNLAMSP-DETTVLSA----GADETLRLWKIFEKVKSKKK 592 (609)
Q Consensus 555 ~~V~~l~~sp-dg~~L~s~----s~Dg~I~iWdl~~~~~~~k~ 592 (609)
.....++++| ++.++++. ..++.|.+||.. ++.....
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 6789999999 45555555 568899999998 5544433
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=4e-12 Score=127.82 Aligned_cols=211 Identities=13% Similarity=0.018 Sum_probs=164.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC-CCCe
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-TQEV 421 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 421 (609)
.+++|++++.++.|.+||.++++.+..+..+. ..+.++.+ ++++|+ +.++.|..||. ++ ..+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G-~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG-RELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS-CEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC-CEEEEEcCCCCccc
Confidence 46789999999999999999999999998776 46777777 678888 45778999999 55 467777654 3578
Q ss_pred EEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeec------CCcccEEEEEEcCCCCcEEEEEeccCCCeEE
Q psy4876 422 CGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLS------RHQAAVKAIAWCPWSPNVLASGGGTADRHIY 494 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~ 494 (609)
.++.+.++|+++++.+. ++.|..+|. .+ +.+..+. .+......+++.++|. ++++. ..++.|.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G------k~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~--~~~~~v~ 149 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KG------EVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL--FATSEVR 149 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TS------CEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE--TTTTEEE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CC------CEEEEEeccCCCCcccccccCceECCCCC-EEEEe--cCCCEEE
Confidence 89999999999999887 778888876 44 3333332 1222345667888885 55554 4799999
Q ss_pred EEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC------CCEEEEEEeCCCCE
Q psy4876 495 FWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS------ARVLNLAMSPDETT 568 (609)
Q Consensus 495 iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~ 568 (609)
.||.. |+.+..+.....+.++...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.+
T Consensus 150 ~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 150 EIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp EECTT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred EECCC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 99998 999999988777778889999999887 4467899999999999999886432 23788899999998
Q ss_pred EEEEE
Q psy4876 569 VLSAG 573 (609)
Q Consensus 569 L~s~s 573 (609)
+++..
T Consensus 227 ~v~~~ 231 (276)
T 3no2_A 227 YICNW 231 (276)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88874
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=4.7e-12 Score=128.34 Aligned_cols=237 Identities=10% Similarity=0.093 Sum_probs=167.3
Q ss_pred CCCeEEEEEccCCCEEEE-------EeCCCeEEEEeCCCCeeEEEec----CCCCceEEEEecC--CEEEEEecCCeEEE
Q psy4876 335 NENVCSVAWIQEGYMLGV-------GTSLGTVQLWDVSAKKKCRTMD----GHDVRVGALAWNT--YILSSGSRCGNIVH 401 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Las-------gs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~~~--~~L~sgs~dg~I~i 401 (609)
-....+++|+++|.++++ +..++.|.+||..+++...... ++...+.+++++. ..|+.++..+.|.+
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~ 96 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEE
Confidence 346789999999988777 5778899999988776543322 2456788899943 35555555557999
Q ss_pred EEcCCCCeeEEEE-cc-----CCCCeEEEEEccCCCEEEEEeCC---------------CcEEEEeCCCCCCCCCccceE
Q psy4876 402 HDVRSRDHKVALL-QN-----HTQEVCGLKWSPDGRYLASGGND---------------NLLNIWSGVPGQHTFSTQPIH 460 (609)
Q Consensus 402 wd~~~~~~~~~~~-~~-----h~~~V~~l~~spdg~~lasgs~D---------------g~I~iwd~~~~~~~~~~~~~~ 460 (609)
||.. +. . ..+ .. ....+.+++++++|+++++...+ +.|..||.. + +. .
T Consensus 97 ~d~~-g~-~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g------~~-~ 165 (314)
T 1pjx_A 97 VQTD-GT-F-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G------QM-I 165 (314)
T ss_dssp EETT-SC-E-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S------CE-E
T ss_pred EeCC-CC-E-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C------CE-E
Confidence 9988 43 2 222 11 12358899999999988777655 567777765 4 22 2
Q ss_pred eecCCcccEEEEEEc----CCCCcEEEEEeccCCCeEEEEECC-CCce-----eEEEcCC--CCeEEEEEcCCCCeEEEE
Q psy4876 461 SLSRHQAAVKAIAWC----PWSPNVLASGGGTADRHIYFWNVS-SGAC-----LDSIDTK--SQVCALLWNSDYKELVSA 528 (609)
Q Consensus 461 ~~~~h~~~V~~l~~s----p~~~~llasggGs~Dg~I~iwd~~-t~~~-----~~~~~~~--~~v~sl~~s~~g~~l~~~ 528 (609)
.+..+......++|+ |++..++++. ..++.|.+||+. +++. ...+..+ ..+..++++++|..+++.
T Consensus 166 ~~~~~~~~~~~i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~ 243 (314)
T 1pjx_A 166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp EEEEEESSEEEEEEEECTTSCEEEEEEEE--TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred EeccCCCCcceEEEecccCCCCCEEEEEE--CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEE
Confidence 222233456889999 9887666665 367899999986 4542 2222222 457889999999877764
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEcCCC
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSA-GADETLRLWKIFEK 586 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl~~~ 586 (609)
. .++.|.+||..+++.+..+..+...+.+++|+++|..|+.+ ..++.|..|++...
T Consensus 244 ~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 244 W--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp E--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred c--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 3 58899999988777777777777889999999999955544 45688999998753
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.52 E-value=6.6e-12 Score=129.32 Aligned_cols=248 Identities=8% Similarity=-0.075 Sum_probs=172.9
Q ss_pred EEEEEecCCCeEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFNVLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
...+.+..+.++.+. .++.|.+||..+ ++... ++........+++++++ .|
T Consensus 46 ~~~i~~~~~~lyv~~~~~~~v~viD~~t-------------------------~~~~~--~i~~~~~p~~i~~~~~g-~l 97 (328)
T 3dsm_A 46 AQSMVIRDGIGWIVVNNSHVIFAIDINT-------------------------FKEVG--RITGFTSPRYIHFLSDE-KA 97 (328)
T ss_dssp EEEEEEETTEEEEEEGGGTEEEEEETTT-------------------------CCEEE--EEECCSSEEEEEEEETT-EE
T ss_pred ceEEEEECCEEEEEEcCCCEEEEEECcc-------------------------cEEEE--EcCCCCCCcEEEEeCCC-eE
Confidence 345666666555544 468999999988 44422 23345678899999998 45
Q ss_pred EEEe-CCCeEEEEeCCCCeeEEEecCCC-----CceEEEEecCCEEEEEe--cCCeEEEEEcCCCCeeEEEEccCCCCeE
Q psy4876 351 GVGT-SLGTVQLWDVSAKKKCRTMDGHD-----VRVGALAWNTYILSSGS--RCGNIVHHDVRSRDHKVALLQNHTQEVC 422 (609)
Q Consensus 351 asgs-~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~l~~~~~~L~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 422 (609)
+++. .++.|.+||..+++....+.... .....+++++..|+++. .++.|.++|..++ ..+..+.. .....
T Consensus 98 yv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~-~~~~~i~~-g~~p~ 175 (328)
T 3dsm_A 98 YVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD-KVVDELTI-GIQPT 175 (328)
T ss_dssp EEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT-EEEEEEEC-SSCBC
T ss_pred EEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC-eEEEEEEc-CCCcc
Confidence 5555 78999999999998887776433 14456667666666665 4889999999987 35555543 33467
Q ss_pred EEEEccCCCEEEEEeCC----------CcEEEEeCCCCCCCCCccceEeecCC-cccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 423 GLKWSPDGRYLASGGND----------NLLNIWSGVPGQHTFSTQPIHSLSRH-QAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 423 ~l~~spdg~~lasgs~D----------g~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
.++++++|++++++..+ +.|.+||..++ +....+... ......++|+|++..++++ ++
T Consensus 176 ~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~------~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~ 244 (328)
T 3dsm_A 176 SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF------TVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NN 244 (328)
T ss_dssp CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT------EEEEEEECCTTCCCEEEEECTTSCEEEEE-----SS
T ss_pred ceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC------eEEEEEecCCCCCceeEEEecCCCEEEEE-----cc
Confidence 88999999977776554 78999999877 444444322 2357899999998777765 23
Q ss_pred eEEEEECCCCceeEE--EcC-CCCeEEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 492 HIYFWNVSSGACLDS--IDT-KSQVCALLWNSDYKELVSAHG---FAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~--~~~-~~~v~sl~~s~~g~~l~~~sG---~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
.|.+||..+++.... +.. ......++++|++..++++.. ..++.|.+||.. ++.+..+..- .....++|
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~ 319 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCW 319 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEec-cCcceEEE
Confidence 899999998876421 122 357889999997666666531 357899999988 8888777532 22345554
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=3.6e-12 Score=128.68 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=161.6
Q ss_pred eEEEEEecCCC--eEE-EEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN--VLA-VALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~--lla-~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
....++|+|++ ++. ...++.|++|+..+ + ...+. . +...+.+++++++|
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-------------------------~-~~~~~-~-~~~~~~~l~~~~dg 80 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-------------------------Q-LSPEM-H-PSHHQNGHCLNKQG 80 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-------------------------C-EEEEE-S-SCSSEEEEEECTTC
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCC-------------------------C-eEEEE-C-CCCCcceeeECCCC
Confidence 35679999985 444 44578999999987 5 32221 1 56779999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCC----CCceEEEEe--cCCEEEEE----e-------------cCCeEEEEEc
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGH----DVRVGALAW--NTYILSSG----S-------------RCGNIVHHDV 404 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~--~~~~L~sg----s-------------~dg~I~iwd~ 404 (609)
+++++...++.|.+||..+++........ ...+..+++ ++.++++. + ..+.|..++.
T Consensus 81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECC
Confidence 98877767789999999887755443321 234566888 46777763 2 1345666665
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC-CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV-PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. + ....+..+.....+++|+|+|+.+++.+.++.|++||+. .+... .....+..+...+.+++++++|. +++
T Consensus 161 ~-g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~---~~~~~~~~~~~~p~~i~~d~~G~-l~v 233 (296)
T 3e5z_A 161 D-G--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETE---YQGVHFTVEPGKTDGLRVDAGGL-IWA 233 (296)
T ss_dssp T-S--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEE---EEEEEECCSSSCCCSEEEBTTSC-EEE
T ss_pred C-C--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCc---CCCeEeeCCCCCCCeEEECCCCC-EEE
Confidence 4 2 344455666778999999999998777778999999987 33100 00122233455667899999984 665
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEE-cCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLW-NSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~-s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+. ++.|.+||.. ++.+..+..+..+.+++| .++++.|++++ .+.|..++..+...
T Consensus 234 ~~----~~~v~~~~~~-g~~~~~~~~~~~~~~~~f~~~d~~~L~v~t---~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 234 SA----GDGVHVLTPD-GDELGRVLTPQTTSNLCFGGPEGRTLYMTV---STEFWSIETNVRGL 289 (296)
T ss_dssp EE----TTEEEEECTT-SCEEEEEECSSCCCEEEEESTTSCEEEEEE---TTEEEEEECSCCBC
T ss_pred Ec----CCeEEEECCC-CCEEEEEECCCCceeEEEECCCCCEEEEEc---CCeEEEEEcccccc
Confidence 43 6889999986 778777776545899999 58999888864 35666667665543
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=4.9e-12 Score=125.36 Aligned_cols=236 Identities=11% Similarity=-0.022 Sum_probs=159.6
Q ss_pred eEEEEEecCCC-eEE-E-EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN-VLA-V-ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~-lla-~-s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
....|++++++ +++ + ..++.|++|+..+ ...... ...+...+.+++++++|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~-------------------------~~~~~~-~~~~~~~p~~i~~~~~g 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS-------------------------TGTTVL-PFNGLYQPQGLAVDGAG 78 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------------------------------EEC-CCCSCCSCCCEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC-------------------------cccceE-eeCCcCCcceeEECCCC
Confidence 56789999986 444 3 4578999999765 222111 11233567889999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+++++.. ++.|.+||................+..++++ +.++++...++.|.+|+..+.. ...........+.+++
T Consensus 79 ~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 79 TVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVA 156 (270)
T ss_dssp CEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEE
T ss_pred CEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEE
Confidence 8665554 8899999987654432222333678889984 6777777778899999765542 2222223334678999
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
++++|+++++...++.|.+||.... ........+...+.+++++++| .++++. ..++.|.+||........
T Consensus 157 ~~~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~d~~g-~l~v~~--~~~~~v~~~~~~~~~~~~ 227 (270)
T 1rwi_B 157 VDNSGNVYVTDTDNNRVVKLEAESN------NQVVLPFTDITAPWGIAVDEAG-TVYVTE--HNTNQVVKLLAGSTTSTV 227 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECTTTC------CEEECCCSSCCSEEEEEECTTC-CEEEEE--TTTSCEEEECTTCSCCEE
T ss_pred EeCCCCEEEEECCCCEEEEEecCCC------ceEeecccCCCCceEEEECCCC-CEEEEE--CCCCcEEEEcCCCCccee
Confidence 9999997777777889999998765 2222222333668899999988 677765 357899999987654433
Q ss_pred EEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q psy4876 506 SIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV 545 (609)
Q Consensus 506 ~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~ 545 (609)
.... ...+.+++++++|+.+++ ...++.|.+|+....+
T Consensus 228 ~~~~~~~~p~~i~~~~~g~l~v~--~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSDRTVYVA--DRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CCCCSCSCEEEEEECTTCCEEEE--EGGGTEEEEECCCGGG
T ss_pred eccCCCCCceeEEECCCCCEEEE--ECCCCEEEEEcCCCcc
Confidence 2222 247899999999985555 4478999999986544
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.50 E-value=1.9e-10 Score=115.13 Aligned_cols=269 Identities=10% Similarity=-0.012 Sum_probs=181.5
Q ss_pred eEEEEEecCCC-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHFN-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
.+..|.+++++ +..+. .++.|.+||... .... ..+. ....+.++++.++|
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~--------------------------~~~~-~~~~~~~~~~~~i~~~~~g 73 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQSG--------------------------RIKE-FEVPTPDAKVMCLIVSSLG 73 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTS--------------------------CEEE-EECSSTTCCEEEEEECTTS
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCCC--------------------------ceEE-EECCCCCCcceeEEECCCC
Confidence 46778898887 44444 468999998762 1111 1122 34678999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
.++++...++.|.+||.. ++... .+......+.+++++ +.++++...++.|..+|.. +......+......+.++
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i 151 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI 151 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred CEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence 877776667899999988 55432 223344678888884 6677766668899999987 432222233345678999
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
++.++|+++++...++.|..||. .+. ........+...+.++++++++ .++++. ...+.|.+||. +++..
T Consensus 152 ~~d~~g~l~v~~~~~~~i~~~~~-~g~-----~~~~~~~~~~~~~~~i~~d~~g-~l~v~~--~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 152 TLGSDNALWFTENQNNSIGRITN-TGK-----LEEYPLPTNAAAPVGITSGNDG-ALWFVE--IMGNKIGRITT-TGEIS 221 (300)
T ss_dssp EECTTSSEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS-SEEEEE--TTTTEEEEECT-TCCEE
T ss_pred EECCCCCEEEEecCCCeEEEECC-CCc-----EEEeeCCCCCCCcceEEECCCC-CEEEEc--cCCCEEEEEcC-CCcEE
Confidence 99999997776666788999998 442 1112222344568899999987 566654 24678999998 55544
Q ss_pred EE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 505 DS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA-ELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 505 ~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
.. +. ....+.+++++++|...++ ...++.|.+|+. ++.... .+......+.+++++++|.++++.. . .|..+
T Consensus 222 ~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 222 EYDIPTPNARPHAITAGKNSEIWFT--EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEE--ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EEECCCCCCCceEEEECCCCCEEEe--ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 33 22 2357899999999985555 335789999998 444332 2333456689999999998666554 4 56666
Q ss_pred Ec
Q psy4876 582 KI 583 (609)
Q Consensus 582 dl 583 (609)
+.
T Consensus 297 ~p 298 (300)
T 2qc5_A 297 NL 298 (300)
T ss_dssp EE
T ss_pred CC
Confidence 54
No 196
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1.2e-11 Score=129.63 Aligned_cols=283 Identities=13% Similarity=0.099 Sum_probs=181.2
Q ss_pred eEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 271 YLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 271 ~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
.++.|++++. ++++++....+.+|+++... .......+..+......+.. |+.|+| ++++
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~----------------~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~ 99 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLR----------------DHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQ 99 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHH----------------HHHHSSSCCCCCSEEEECTT-EEEEEE--ETTE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhh----------------hhhccccccccceEEeeCCC-eeEEEE--CCCE
Confidence 4789999997 57777776788889976510 00000001122222333455 999999 9999
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
|+++ .+|.|++||+.+.........|...+.++.+....+++++.||.|.+||+..+.. .. +...|+|++|||+
T Consensus 100 L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpk 173 (388)
T 1xip_A 100 VLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNS 173 (388)
T ss_dssp EEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSS
T ss_pred EEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCC
Confidence 9999 7799999999877666667778888999888554588899999999999997642 22 4568999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccc--eEee------c---CCcccEEEEEEcCCCCcEEEEEecc---C-----C
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQP--IHSL------S---RHQAAVKAIAWCPWSPNVLASGGGT---A-----D 490 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~--~~~~------~---~h~~~V~~l~~sp~~~~llasggGs---~-----D 490 (609)
| ++.|..||.|++|+...+ .. ...+ . +|...|.+|.|.+++..+++-+... . +
T Consensus 174 G--~~vg~~dg~i~~~~~~~~------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~ 245 (388)
T 1xip_A 174 Q--LAVLLKDRSFQSFAWRNG------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYD 245 (388)
T ss_dssp E--EEEEETTSCEEEEEEETT------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCC
T ss_pred c--eEEEEcCCcEEEEcCCCc------cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCc
Confidence 9 788999999999988765 22 3334 2 3778899999999886665544211 1 2
Q ss_pred CeEEEEECCCCcee-EEE-c----CC----C----CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-----
Q psy4876 491 RHIYFWNVSSGACL-DSI-D----TK----S----QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH----- 551 (609)
Q Consensus 491 g~I~iwd~~t~~~~-~~~-~----~~----~----~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~----- 551 (609)
-.++|.+...+... ..+ + .. . ...--.|.|+.+.|+.++....-.|-|++-. ..+..+.
T Consensus 246 ~~~~ii~~~~~~~~f~~~~d~~~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra 323 (388)
T 1xip_A 246 QKMYIIKHIDGSASFQETFDITPPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERA 323 (388)
T ss_dssp EEEEEEEEETTEEEEEEESSSCCCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCC
T ss_pred ceEEEEEcCCCCceeEccccCcCCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccc
Confidence 25677663233221 112 1 00 0 1222357777777776655555566666532 1111111
Q ss_pred --------CCCCCEEEEEEeCC-----------------CCEEEEEECCCCEEEEEcCCCcc
Q psy4876 552 --------GHSARVLNLAMSPD-----------------ETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 552 --------~h~~~V~~l~~spd-----------------g~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
+.......+++.-. -..|.+-+.||.+..|.+...+.
T Consensus 324 ~lPl~~~~~~Dt~piG~alD~ss~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~~ 385 (388)
T 1xip_A 324 VLPISEETDKDTNPIGVAVDVVTSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVAA 385 (388)
T ss_dssp BCCBCTTTCCBCCEEEEEEECSCCC--------------CCEEEEEETTSEEEEEEEEC---
T ss_pred eeccCCCCCCCCcceEEEEEcccCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchhh
Confidence 11122344444321 23578888999999999876553
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=3.1e-10 Score=113.57 Aligned_cols=236 Identities=11% Similarity=0.014 Sum_probs=168.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEE-ecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRT-MDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
+...+.++++.++|+++++...++.|.+||.. ++.... +..+...+.+++++ +.++++...++.|..||... ...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-IIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cEE
Confidence 45689999999999877766667899999988 554332 23355778899984 67776666688999999863 222
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
...+......+.++++.++|.++++...++.|.+||. ++. ........+...+.++++.+++ .++++. ..+
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g-~l~v~~--~~~ 161 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK-----IREYELPNKGSYPSFITLGSDN-ALWFTE--NQN 161 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS-CEEEEE--TTT
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC-----EEEecCCCCCCCCceEEEcCCC-CEEEEe--CCC
Confidence 2222234567899999999998888777889999998 442 1112223345578999999988 566654 357
Q ss_pred CeEEEEECCCCceeEE-Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEEeCCCC
Q psy4876 491 RHIYFWNVSSGACLDS-ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~-~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~ 567 (609)
+.|..||. +++.... .. ....+..+++++++..+++ ...++.|.+||. ++..... +..+...+.+++++++|.
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~ 237 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGID 237 (299)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCC
Confidence 89999999 6665543 22 2346889999999886555 335789999998 6654332 233557799999999999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
++++...++.|.+||..
T Consensus 238 l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEeccCCceEEEECCC
Confidence 77666578899999983
No 198
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=5.1e-12 Score=144.85 Aligned_cols=243 Identities=12% Similarity=0.076 Sum_probs=160.3
Q ss_pred CCeEEEEEccCCCEEEEEeCC-----CeEEEEeCCCCeeEEEecCCCCceEEEEecC-CEEEEEecCCe-----------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSL-----GTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-YILSSGSRCGN----------- 398 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-~~L~sgs~dg~----------- 398 (609)
..+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|.+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 468899999999999987654 46999999998875532 1222235678832 77777776543
Q ss_pred ---EEEEEcCCCCee-EEEEc--cCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCCCCCCccc-eEeecCCc
Q psy4876 399 ---IVHHDVRSRDHK-VALLQ--NHTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGVPGQHTFSTQP-IHSLSRHQ 466 (609)
Q Consensus 399 ---I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~-~~~~~~h~ 466 (609)
|++|++.++... ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++. .. ...+..+.
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~~~~l~~~~ 316 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGK-----IGPVTALIPDL 316 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTE-----ECCCEEEECSS
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCC-----CcccEEecCCC
Confidence 899999776421 22333 3334588999999999988877554 89999987651 12 34455555
Q ss_pred ccEEEEEEcCCCCcEEEEEe-ccCCCeEEEEECCCC--ceeEEEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECC
Q psy4876 467 AAVKAIAWCPWSPNVLASGG-GTADRHIYFWNVSSG--ACLDSIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYP 542 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasgg-Gs~Dg~I~iwd~~t~--~~~~~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~ 542 (609)
..+.... .|++..+++... +..++.|.+||+.++ .....+.... .+..+.|+ ++..+++. ..++..+||.+.
T Consensus 317 ~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~--~~dg~~~l~~~~ 392 (741)
T 1yr2_A 317 KAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASY--IHDAKSQVLAFD 392 (741)
T ss_dssp SSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEE--EETTEEEEEEEE
T ss_pred CceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEE--EECCEEEEEEEe
Confidence 5555554 488877776652 112567999999875 3333343333 45677777 44444443 367776666543
Q ss_pred -CCceEEEEeC-CCCCEEEEEEeCCCCEEE-EEE---CCCCEEEEEcCCCcc
Q psy4876 543 -SLVKVAELHG-HSARVLNLAMSPDETTVL-SAG---ADETLRLWKIFEKVK 588 (609)
Q Consensus 543 -~~~~~~~l~~-h~~~V~~l~~spdg~~L~-s~s---~Dg~I~iWdl~~~~~ 588 (609)
.+..+..+.. +.+.|..++++|++..|+ +.+ ..++|++||+.+++.
T Consensus 393 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 393 LDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4556666654 367789999999988555 332 347899999987653
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=4.9e-10 Score=117.55 Aligned_cols=257 Identities=10% Similarity=-0.032 Sum_probs=174.7
Q ss_pred eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCeE
Q psy4876 290 SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGTV 359 (609)
Q Consensus 290 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~I 359 (609)
.|.+||..+ ++. +.++.....- .++++|||++|+++. .++.|
T Consensus 48 ~v~v~D~~t-------------------------~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v 99 (373)
T 2mad_H 48 QQWVLDAGS-------------------------GSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred EEEEEECCC-------------------------CeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeE
Confidence 789999987 443 3344422223 999999999999886 36789
Q ss_pred EEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEE-EccCCCCeEEEEEc
Q psy4876 360 QLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVAL-LQNHTQEVCGLKWS 427 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s 427 (609)
.+||..+.+.+..+... ......+.| ++++|+++.. ++.|.++| .++. .+.. +.. .. ++.+.
T Consensus 100 ~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~~-~~---~~~~~ 173 (373)
T 2mad_H 100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLSS-PT---CYHIH 173 (373)
T ss_pred EEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcCC-Cc---eEEEE
Confidence 99999988887766432 122345666 6888888774 57899999 8763 4544 432 22 24455
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-----CCccc-EEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 428 PDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-----RHQAA-VKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 428 pdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~-V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
|++ +.+++.+.||.+.++|. +++ .+.... ....+ .....+.+++..+++.. ..+.+.+.|+.+
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~ 243 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGG------AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISA 243 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCc------EEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccC
Confidence 654 45666778999999999 663 221111 11122 12345666666666553 578999999976
Q ss_pred Cc--eeEEEcC-----------CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEE
Q psy4876 501 GA--CLDSIDT-----------KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLN 559 (609)
Q Consensus 501 ~~--~~~~~~~-----------~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~ 559 (609)
+. .+..+.. ......+.++++++.++++... ..+.|.++|..+++.+..+.. .....+
T Consensus 244 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~ 322 (373)
T 2mad_H 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDA 322 (373)
T ss_pred CcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCe
Confidence 53 2233321 1224457899999988886421 246899999999999988853 335899
Q ss_pred EEEeCCCC-EEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 560 LAMSPDET-TVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 560 l~~spdg~-~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
++|+|||+ .++++. .++.|.+||+.+.+..+.
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 99999999 777777 589999999999887765
No 200
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.44 E-value=3.5e-11 Score=120.88 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=154.4
Q ss_pred cCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CC-CCeEEEEEccCCCEEEEEe
Q psy4876 278 SHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GN-ENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 278 sp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~-~~V~~v~~spdg~~Lasgs 354 (609)
+|++ +++++.++.|++||.++ ++. +.++. +. ..+.++.++|+|++|+ +
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~t-------------------------G~~--~w~~~~~~~~~~~~~~~~pdG~ilv--s 53 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDT-------------------------KEI--VWEYPLEKGWECNSVAATKAGEILF--S 53 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTT-------------------------TEE--EEEEECCTTCCCCEEEECTTSCEEE--E
T ss_pred CCCcEEEeeCCCCEEEEEECCC-------------------------CeE--EEEeCCCccCCCcCeEECCCCCEEE--e
Confidence 4666 44566789999999977 554 34444 33 4789999999999888 4
Q ss_pred CCCeEEEEeCCCCeeEEEecCCC-CceEEEEe--cCCEEEEEec-CCeEEEEEcCCCCeeEEEEc------cCCCCeEEE
Q psy4876 355 SLGTVQLWDVSAKKKCRTMDGHD-VRVGALAW--NTYILSSGSR-CGNIVHHDVRSRDHKVALLQ------NHTQEVCGL 424 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~--~~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l 424 (609)
.++.|..||. +++.+..+..+. ..+.++.+ +++++++.+. ++.|..+|.. + ..+..+. .+......+
T Consensus 54 ~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~~~~~~~~~~~v 130 (276)
T 3no2_A 54 YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-G-EVLSKTEFETGIERPHAQFRQI 130 (276)
T ss_dssp CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-S-CEEEEEEECCSCSSGGGSCSCC
T ss_pred CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-C-CEEEEEeccCCCCcccccccCc
Confidence 5678999999 889998888653 46777777 7889988887 7788888763 3 3444433 122245567
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee
Q psy4876 425 KWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL 504 (609)
Q Consensus 425 ~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~ 504 (609)
++.++|+++++...++.|.+||.. + +.+.++..+ ..+.++...+++. +++++ ..++.|..+|..+|+.+
T Consensus 131 ~~~~~G~~lv~~~~~~~v~~~d~~-G------~~~w~~~~~-~~~~~~~~~~~g~-~~v~~--~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 131 NKNKKGNYLVPLFATSEVREIAPN-G------QLLNSVKLS-GTPFSSAFLDNGD-CLVAC--GDAHCFVQLNLESNRIV 199 (276)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-S------CEEEEEECS-SCCCEEEECTTSC-EEEEC--BTTSEEEEECTTTCCEE
T ss_pred eECCCCCEEEEecCCCEEEEECCC-C------CEEEEEECC-CCccceeEcCCCC-EEEEe--CCCCeEEEEeCcCCcEE
Confidence 889999999999999999999998 7 566666544 3455677888875 55554 25778999999999999
Q ss_pred EEEcCC-------CCeEEEEEcCCCCeEEEEE
Q psy4876 505 DSIDTK-------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 505 ~~~~~~-------~~v~sl~~s~~g~~l~~~s 529 (609)
..+... ..+..++..++|..+++..
T Consensus 200 w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 200 RRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred EEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 888532 1377888888888887753
No 201
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=3.3e-10 Score=118.82 Aligned_cols=243 Identities=9% Similarity=-0.092 Sum_probs=163.5
Q ss_pred EEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 274 LIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 274 ~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
.+.+|||+ .+.++ .++.|.+||..+ .+......+. +.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t-------------------------~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFDVG 124 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC-------------------------CcEEEEEECCCccccccC
Confidence 58899997 44433 267899999987 3322222111 12
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEE-ecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRT-MDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.....++|+|||++|+++.. ++.|.++| .+++.+.. +... ..+....+....+++.+.||.+.++|. ++. ...
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~ 200 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAG 200 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEE
Confidence 34568999999999998874 47899999 99988877 6532 223323334567778889999999999 654 332
Q ss_pred EEc-----cCCCC-eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC----------CcccEEEEEEcC
Q psy4876 413 LLQ-----NHTQE-VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR----------HQAAVKAIAWCP 476 (609)
Q Consensus 413 ~~~-----~h~~~-V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~l~~sp 476 (609)
... ..... .....+.+++..++..+.++.|.+.|+..... ..+..+.. .......+.++|
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~ 276 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA----TNKAPIDALSGGRKADTWRPGGWQQVAYLK 276 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc----eEeeeeeecCCcccccceecCceEeEEECC
Confidence 211 11122 12345667666555555778999999975421 11111110 122344578999
Q ss_pred CCCcEEEEEecc-------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEE
Q psy4876 477 WSPNVLASGGGT-------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 477 ~~~~llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
++..++++.... .++.|.++|+.+++.+..+........++|++||+ .+++ +...++.|.+||..+++.+.
T Consensus 277 d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v-~~~~~~~V~ViD~~t~~vv~ 355 (373)
T 2mad_H 277 SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYA-LSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred CCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEE-EcCCCCeEEEEECCCCCEEe
Confidence 998888764210 14689999999999999998888899999999999 5555 34458999999999999988
Q ss_pred EE
Q psy4876 549 EL 550 (609)
Q Consensus 549 ~l 550 (609)
.+
T Consensus 356 ~i 357 (373)
T 2mad_H 356 ST 357 (373)
T ss_pred ee
Confidence 74
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.4e-10 Score=123.20 Aligned_cols=235 Identities=10% Similarity=0.012 Sum_probs=164.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCC--eEEEEEcCCCCeeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCG--NIVHHDVRSRDHKV 411 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg--~I~iwd~~~~~~~~ 411 (609)
.....|+|+++|+++++...++.|++||..++............ . ++| ++..|+++..++ .|.+++...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46789999999997777777899999999987776655543332 2 777 567888888766 799998876532 2
Q ss_pred EEE----ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEe--ecCCcccE--EEEEEcCCCCcEEE
Q psy4876 412 ALL----QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHS--LSRHQAAV--KAIAWCPWSPNVLA 483 (609)
Q Consensus 412 ~~~----~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~h~~~V--~~l~~sp~~~~lla 483 (609)
..+ ......+.+++++|++..|+++..++.|+.||..++.. ..+.. ..++...- ..++|+|++..+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 233 22456788999999555555577788999999987621 11100 11222222 38999997667887
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcC---------------CCCeEEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceE
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDT---------------KSQVCALLWNSDYKELVSAHGF-AQNQLIIWKYPSLVKV 547 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~---------------~~~v~sl~~s~~g~~l~~~sG~-~dg~I~Iwd~~~~~~~ 547 (609)
+. ..++.|+.||.... ....... -.....++++++|..+++ .. .++.|+.|+..++..
T Consensus 284 ~d--~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v- 357 (409)
T 3hrp_A 284 SD--QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV- 357 (409)
T ss_dssp EE--TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE-
T ss_pred Ee--CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE-
Confidence 76 36889999997643 2222211 134789999999995554 55 688999999877764
Q ss_pred EEEeCC---------------CCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 548 AELHGH---------------SARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 548 ~~l~~h---------------~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
..+.++ -.....|+++++|.++++-..++.|+.+++
T Consensus 358 ~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444444 245889999999888888888888988776
No 203
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=1.4e-09 Score=108.79 Aligned_cols=236 Identities=9% Similarity=-0.031 Sum_probs=167.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
....+.++++.++|+.+++...++.|.+||.. ++... .+..+...+..++++ +.++++...++.|..+|.. +...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 45688999999999988777678999999988 55443 233344678889884 5666666667899999987 4322
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
..........+.++++.++|+++++...++.|..||.. +. .....+......+.++++.+++. ++++. ..+
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-----~~~~~~~~~~~~~~~i~~d~~g~-l~v~~--~~~ 166 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT-----IYEYDLPNKGSYPAFITLGSDNA-LWFTE--NQN 166 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECTTSS-EEEEE--TTT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC-----EEEccCCCCCCCceeEEECCCCC-EEEEe--cCC
Confidence 22233344678999999999988877768899999987 42 11122333455789999999885 66654 257
Q ss_pred CeEEEEECCCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-EeCCCCCEEEEEEeCCCC
Q psy4876 491 RHIYFWNVSSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE-LHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~ 567 (609)
+.|..||. +++...... ....+..+++++++...++ ....+.|.+|+. ++..... +..+...+.+++++++|.
T Consensus 167 ~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 167 NSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp TEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC
T ss_pred CeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC
Confidence 88999998 565543221 2346889999999876655 335678999998 4443332 334556789999999999
Q ss_pred EEEEEECCCCEEEEEcC
Q psy4876 568 TVLSAGADETLRLWKIF 584 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~ 584 (609)
+.++...++.|..|+..
T Consensus 243 l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEeccCCCeEEEECCC
Confidence 77766667899999984
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=5.3e-11 Score=136.36 Aligned_cols=239 Identities=10% Similarity=-0.008 Sum_probs=159.2
Q ss_pred eeEEEEEecCCC-eEEEEc--C----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVAL--G----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~--d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .|+.+. + ..|++||+.+ +..... .+ +...+..++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-------------------------g~~~~~-~~-~~~~~~~~~ 215 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-------------------------GKPLAD-EL-KWVKFSGLA 215 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-------------------------CCEEEE-EE-EEEESCCCE
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-------------------------CCCCCc-cC-CCceeccEE
Confidence 578899999997 555332 2 3699999998 554332 11 122235789
Q ss_pred EccCCCEEEEEeCCCe--------------EEEEeCCCCee--EEEec--CCCCceEEEEe--cCCEEEEEecCC-----
Q psy4876 343 WIQEGYMLGVGTSLGT--------------VQLWDVSAKKK--CRTMD--GHDVRVGALAW--NTYILSSGSRCG----- 397 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~--------------I~iwd~~~~~~--~~~l~--~h~~~V~~l~~--~~~~L~sgs~dg----- 397 (609)
|+|| +.|+.+..++. |.+|++.++.. ...+. .+...+..+.| +|++|+..+.++
T Consensus 216 wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 216 WLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVN 294 (741)
T ss_dssp ESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCC
T ss_pred EECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcc
Confidence 9999 99998887654 89999977652 22333 34445888888 577777776544
Q ss_pred eEEEEEcCCCCee-EEEEccCCCCeEEEEEccCCCEEEEEeCC----CcEEEEeCCCCCCCCCccceEeecCCcccEEEE
Q psy4876 398 NIVHHDVRSRDHK-VALLQNHTQEVCGLKWSPDGRYLASGGND----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 398 ~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg~~lasgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l 472 (609)
.|++||+.++... ...+..+...+.... +|+|+.|+..+++ +.|.+||+.++. ......+..+...+..+
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~----~~~~~l~~~~~~~l~~~ 369 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST----PRFDTVVPESKDNLESV 369 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS----CEEEEEECCCSSEEEEE
T ss_pred eEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc----cccEEEecCCCCeEEEE
Confidence 8999999876323 445555555555553 4899998888764 459999987641 02223334444556777
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECC-CCceeEEEcC--CCCeEEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVS-SGACLDSIDT--KSQVCALLWNSDYKELVSAH--GFAQNQLIIWKYPSLV 545 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~-t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~s--G~~dg~I~Iwd~~~~~ 545 (609)
+|. +..++++.. .|+..+||.+. ++.....+.. ...+..+.++++++.++... ....++|++||+.+++
T Consensus 370 ~~~--~~~lv~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 370 GIA--GNRLFASYI--HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEE--BTEEEEEEE--ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEE--CCEEEEEEE--ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 887 446777663 67776666544 4666666654 35688899999998776542 2345789999998776
No 205
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=2e-10 Score=119.87 Aligned_cols=257 Identities=11% Similarity=0.032 Sum_probs=173.7
Q ss_pred EEecCCC--eEEEE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC------CC
Q psy4876 275 IDWSHFN--VLAVA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG------NE 336 (609)
Q Consensus 275 l~wsp~~--lla~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h------~~ 336 (609)
+.++||+ ++++. .++.|.+||..+ .+......+.. ..
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-------------------------~~v~~~I~v~~g~r~~~g~ 137 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-------------------------LLPTADIELPDAPRFLVGT 137 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------------------------CCEEEEEEETTCCCCCBSC
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------------------------CeEEEEEECCCccccccCC
Confidence 7889986 33332 357899999988 44333333221 23
Q ss_pred CeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEE
Q psy4876 337 NVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~ 413 (609)
....++|+|||++|+++.. ++.|.|+|+.+++.+.++.... +..+.- ..+.+++.+.||.+.+.++.........
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--cceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 5667999999999998864 6899999999999999886422 112212 4677889999999999999763333222
Q ss_pred EccCC----CCeE-EEEEc-cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec----------CCcccEEEEEEcCC
Q psy4876 414 LQNHT----QEVC-GLKWS-PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS----------RHQAAVKAIAWCPW 477 (609)
Q Consensus 414 ~~~h~----~~V~-~l~~s-pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------~h~~~V~~l~~sp~ 477 (609)
...+. ..+. ...|. ++|++++ .+.+|.|++.|+..... ..+..+. ........++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~----~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~ 290 (386)
T 3sjl_D 216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDA----KFLPAVEALTEAERADGWRPGGWQQVAYHRA 290 (386)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSC----EECCCEESSCHHHHHTTEEECSSSCEEEETT
T ss_pred ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcc----eeecceeccccccccccccCCCcceeeECCC
Confidence 21111 2221 24664 5775544 56689999999976521 1111111 01223345777999
Q ss_pred CCcEEEEEec----c---CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 478 SPNVLASGGG----T---ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 478 ~~~llasggG----s---~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
+..++++... + ..+.|.++|+.+++.+..+.....+.+++++++++ +|+++. ..++.|.++|..+++.+..
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn-~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS-TGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEE-TTTTEEEEEETTTCCEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEc-CCCCeEEEEECCCCcEEEE
Confidence 9888876420 0 12679999999999999999888899999999997 566654 3689999999999999998
Q ss_pred EeCCCCCEEEEEEeCC
Q psy4876 550 LHGHSARVLNLAMSPD 565 (609)
Q Consensus 550 l~~h~~~V~~l~~spd 565 (609)
+..- +.-+.|.+++|
T Consensus 370 i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 370 VNQL-GHGPQVITTAD 384 (386)
T ss_dssp ECCC-CSSCCEEEECC
T ss_pred ecCC-CCCceeEECCc
Confidence 8543 23355666666
No 206
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.39 E-value=1.2e-10 Score=121.63 Aligned_cols=272 Identities=11% Similarity=0.061 Sum_probs=179.5
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEe----------CC
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGT----------SL 356 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs----------~d 356 (609)
++.|.+.|..+ .+.. .++. ...+ .++++|||++|+++. .+
T Consensus 58 ~~~V~ViD~~t-------------------------~~v~--~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 58 VTQQFVIDGEA-------------------------GRVI--GMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp SEEEEEEETTT-------------------------TEEE--EEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCEEEEEECCC-------------------------CeEE--EEEECCCCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 46899999987 4433 3343 3333 499999999888875 35
Q ss_pred CeEEEEeCCCCeeEEEecCCC-------CceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 357 GTVQLWDVSAKKKCRTMDGHD-------VRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 357 g~I~iwd~~~~~~~~~l~~h~-------~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+.|.+||..+.+.+..+.... .....+.+ ++++|+++.. ++.|.++|+.+. ..+..+.... +...
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~-~vv~tI~v~g---~~~~ 184 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK-AFKRMLDVPD---CYHI 184 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS---EEEE
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC-cEEEEEECCC---ccee
Confidence 789999999999888775321 13345666 6888887764 689999999997 4666664321 1233
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCC-CCCCCCccceEeecCCcccEE-EEEEc-CCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVK-AIAWC-PWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~-~l~~s-p~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+....+.+++.+.||.+.+.++.. ++.. ... ...+.....++. ...|. ++|..+++ +.++.|++.|+.++.
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~-~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~v----s~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPE-ITH-TEVFHPEDEFLINHPAYSQKAGRLVWP----TYTGKIHQIDLSSGD 258 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCE-EEE-CCCCSCTTSCBCSCCEEETTTTEEEEE----BTTSEEEEEECTTSS
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEE-Eee-cceeccccccccccceeEcCCCcEEEE----eCCCEEEEEECCCCc
Confidence 433456777888899999999876 4210 000 001111112221 23554 56643443 268999999997664
Q ss_pred --eeEEEc--------C---CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 503 --CLDSID--------T---KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 503 --~~~~~~--------~---~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.+..+. . ......++++++++.++++... ..+.|.++|..+++.+..+..- ..++.|+
T Consensus 259 ~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~la 337 (386)
T 3sjl_D 259 AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN 337 (386)
T ss_dssp CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEE
T ss_pred ceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEE
Confidence 333332 0 1234457779999999987531 1367999999999999887532 3688999
Q ss_pred EeCCCC-EEEEE-ECCCCEEEEEcCCCccchhhhhhcccc
Q psy4876 562 MSPDET-TVLSA-GADETLRLWKIFEKVKSKKKEIKNNAS 599 (609)
Q Consensus 562 ~spdg~-~L~s~-s~Dg~I~iWdl~~~~~~~k~~~~~~~~ 599 (609)
+++|++ +|+++ ..++.|.++|..+++..+.........
T Consensus 338 vs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~ 377 (386)
T 3sjl_D 338 VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP 377 (386)
T ss_dssp ECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSC
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCc
Confidence 999997 66665 458999999999888766655544433
No 207
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.38 E-value=5.1e-11 Score=135.48 Aligned_cols=232 Identities=9% Similarity=-0.015 Sum_probs=154.4
Q ss_pred cCCCEEEEEeCCC-----eEEEEeCCCCeeEEEec------CCCCceEEEEe--cCCEEEE-----EecCCeEEEEEcCC
Q psy4876 345 QEGYMLGVGTSLG-----TVQLWDVSAKKKCRTMD------GHDVRVGALAW--NTYILSS-----GSRCGNIVHHDVRS 406 (609)
Q Consensus 345 pdg~~Lasgs~dg-----~I~iwd~~~~~~~~~l~------~h~~~V~~l~~--~~~~L~s-----gs~dg~I~iwd~~~ 406 (609)
|+|.+++....++ .|.+.+...++....+. +|...+..++| +|++|+. |+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 7888877766543 34444554554433332 45557888999 5777773 33446899999998
Q ss_pred CCeeEEEEccCCCCe--EEEEEccCCCEEEEEeCCCc-------------EEEEeCCCCCCCCCccceEeecCCcccEEE
Q psy4876 407 RDHKVALLQNHTQEV--CGLKWSPDGRYLASGGNDNL-------------LNIWSGVPGQHTFSTQPIHSLSRHQAAVKA 471 (609)
Q Consensus 407 ~~~~~~~~~~h~~~V--~~l~~spdg~~lasgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 471 (609)
+... . ..+...+ ..++|+|||+.|+.++.|.. |++|++.++... ...+.....+...+..
T Consensus 157 g~~~-~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~--~~lv~~~~~~~~~~~~ 231 (695)
T 2bkl_A 157 GEWS-K--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK--DTVVHERTGDPTTFLQ 231 (695)
T ss_dssp CCBC-S--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG--CEEEECCCCCTTCEEE
T ss_pred CCCc-C--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh--ceEEEecCCCCEEEEE
Confidence 7532 0 1122222 67899999999999998776 999999877310 1234444456668899
Q ss_pred EEEcCCCCcEEEEEecc-CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce--
Q psy4876 472 IAWCPWSPNVLASGGGT-ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGF--AQNQLIIWKYPSLVK-- 546 (609)
Q Consensus 472 l~~sp~~~~llasggGs-~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~--~dg~I~Iwd~~~~~~-- 546 (609)
+.|+|+|+.++++.... ....|++||..+++..........+....| ++|. +++.+.. .++.|.+||+.++..
T Consensus 232 ~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 232 SDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp EEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred EEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC
Confidence 99999998887765311 123788887766665544444455666666 6666 6554421 368899999987653
Q ss_pred EEEEeCC--CCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 547 VAELHGH--SARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 547 ~~~l~~h--~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
...+..| ...|..++|+ ++.++++...|+..+||.+.
T Consensus 310 ~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 2334333 4568889998 77888999999999888765
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.37 E-value=4.4e-10 Score=113.70 Aligned_cols=223 Identities=12% Similarity=0.109 Sum_probs=153.6
Q ss_pred CCCeEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
..-..+..|++++ .++++...++.|..||..+++. ..+. ....+.++++ ++.+++ +. ++.|.+||..++. ..
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~-~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQS-AV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTE-EE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCc-EE
Confidence 3455689999965 5566666788999999987654 3332 4567899999 466544 44 5689999998763 22
Q ss_pred EEEcc----CCCCeEEEEEccCCCEEEEEeCC-----------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcC
Q psy4876 412 ALLQN----HTQEVCGLKWSPDGRYLASGGND-----------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 412 ~~~~~----h~~~V~~l~~spdg~~lasgs~D-----------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp 476 (609)
..... ....+..++++|+|+++++...+ +.|+.+|.. + .+..+..+......++|+|
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g-------~~~~~~~~~~~pngi~~sp 158 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-H-------HVKKYFDQVDISNGLDWSL 158 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-S-------CEEEEEEEESBEEEEEECT
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-C-------CEEEEeeccccccceEEcC
Confidence 22211 12357889999999976654321 344444433 2 1222333344568999999
Q ss_pred CCCcEEEEEeccCCCeEEEEEC--CCCcee--EEE---c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 477 WSPNVLASGGGTADRHIYFWNV--SSGACL--DSI---D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~--~t~~~~--~~~---~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
++..++++. +.++.|.+||+ .++... ..+ . ....+..++++++|...++. ...+.|.+||..+++.+.
T Consensus 159 dg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~--~~~~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 159 DHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC--YNGGRVIRLDPVTGKRLQ 234 (297)
T ss_dssp TSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEE--ETTTEEEEECTTTCCEEE
T ss_pred CCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEE--cCCCEEEEEcCCCceEEE
Confidence 998777776 36789999997 456532 112 1 12467899999999766663 357889999999999999
Q ss_pred EEeCCCCCEEEEEEe-CCCCEEEEEEC
Q psy4876 549 ELHGHSARVLNLAMS-PDETTVLSAGA 574 (609)
Q Consensus 549 ~l~~h~~~V~~l~~s-pdg~~L~s~s~ 574 (609)
.+..+...+++++|. ||++.|+.++.
T Consensus 235 ~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 235 TVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 988887889999998 88887766654
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=4e-10 Score=114.01 Aligned_cols=237 Identities=8% Similarity=0.023 Sum_probs=157.4
Q ss_pred EEEEEecCCC-eEEE--------EcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee--ec-CCCCeE
Q psy4876 272 LNLIDWSHFN-VLAV--------ALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD--LE-GNENVC 339 (609)
Q Consensus 272 v~~l~wsp~~-lla~--------s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-h~~~V~ 339 (609)
...++|++++ ++.+ ..++.|++||..+ +....+.. .. +...+.
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-------------------------g~~~~~~~~~~~~~~~~~~ 74 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-------------------------GKKTVICKPEVNGYGGIPA 74 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-------------------------CCEEEEECCEETTEECCEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-------------------------CcEEEEEecccCCCCCCCc
Confidence 4568999886 4444 5688999999877 44433321 01 235689
Q ss_pred EEEEccC-CCEEEEEeCCCeEEEEeCCCCeeEEE-ecC----CCCceEEEEec--CCEEEEEecC---------------
Q psy4876 340 SVAWIQE-GYMLGVGTSLGTVQLWDVSAKKKCRT-MDG----HDVRVGALAWN--TYILSSGSRC--------------- 396 (609)
Q Consensus 340 ~v~~spd-g~~Lasgs~dg~I~iwd~~~~~~~~~-l~~----h~~~V~~l~~~--~~~L~sgs~d--------------- 396 (609)
+++++++ |++++ ++..+.|.+||.. ++.... ... ....+.+++++ +.++++...+
T Consensus 75 ~i~~~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 1pjx_A 75 GCQCDRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF 152 (314)
T ss_dssp EEEECSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred eEEEecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCC
Confidence 9999999 66554 4444579999988 665433 221 12457888884 6677666554
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEc----cCCCEEEEE-eCCCcEEEEeCC-CCCCCCCccceEeecCCc-ccE
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWS----PDGRYLASG-GNDNLLNIWSGV-PGQHTFSTQPIHSLSRHQ-AAV 469 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s----pdg~~lasg-s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h~-~~V 469 (609)
+.|..||.. +. . ..+..+.....+++|+ ++|+.|+++ ..++.|.+||+. .+.. ........+..+. ..+
T Consensus 153 ~~l~~~~~~-g~-~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p 228 (314)
T 1pjx_A 153 GSIYCFTTD-GQ-M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKI-ENKKVWGHIPGTHEGGA 228 (314)
T ss_dssp EEEEEECTT-SC-E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEE-EEEEEEEECCCCSSCEE
T ss_pred CeEEEECCC-CC-E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCcc-ccceEEEECCCCCCCCC
Confidence 567777765 32 2 2233344557899999 999765555 467899999976 3310 0001223333343 567
Q ss_pred EEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 470 KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 470 ~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
..++++++| .++++.. .++.|.+||..+++.+..+..+ ..+.+++|+++++.|+++. ..++.|..|+...
T Consensus 229 ~~i~~d~~G-~l~v~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~-~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 229 DGMDFDEDN-NLLVANW--GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTE-HENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEBTTC-CEEEEEE--TTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEE-TTTTEEEEEECSS
T ss_pred CceEECCCC-CEEEEEc--CCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEe-CCCCeEEEEeCCC
Confidence 899999988 4655542 5789999999878877777655 5799999999999776653 3567899999764
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.35 E-value=5.5e-11 Score=135.20 Aligned_cols=243 Identities=13% Similarity=0.154 Sum_probs=162.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-----CCeEEEEeCCCCeeEEE-ecCCCCceEEEEe-cCCEEEEEecCC---------
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-----LGTVQLWDVSAKKKCRT-MDGHDVRVGALAW-NTYILSSGSRCG--------- 397 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-----dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~-~~~~L~sgs~dg--------- 397 (609)
+...+..++|||||++||.+.. ...|+|||+.+++.+.. +... ....++| |++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 3446888999999999986432 25799999999886543 2211 1234556 788888877764
Q ss_pred ----eEEEEEcCCCCee-EEEEc--c-CCCCeEEEEEccCCCEEEEEeC----CCcEEEEeCCCCCCCCCccceEeecCC
Q psy4876 398 ----NIVHHDVRSRDHK-VALLQ--N-HTQEVCGLKWSPDGRYLASGGN----DNLLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 398 ----~I~iwd~~~~~~~-~~~~~--~-h~~~V~~l~~spdg~~lasgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
.|++|++.+.... ...+. . |...+.++.|+|||++|+.... ++.|++||+.++. .....+..+
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~ 279 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGD 279 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCC
Confidence 3999999876421 22232 3 4455788999999998865443 3589999998763 234555556
Q ss_pred cccEEEEEEcCCCCcEEEEEec-cCCCeEEEEECCCCce--eEEE-cCCCCeEEEEEcCCCCeEEEEEecCCC--eEEEE
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGG-TADRHIYFWNVSSGAC--LDSI-DTKSQVCALLWNSDYKELVSAHGFAQN--QLIIW 539 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggG-s~Dg~I~iwd~~t~~~--~~~~-~~~~~v~sl~~s~~g~~l~~~sG~~dg--~I~Iw 539 (609)
....... |++++..+++.... ...+.|..+|+.++.. ...+ .+...+. .|+++++.|+.... .++ .|++|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-VDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE-ETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE-ECCeeEEEEE
Confidence 6655555 67777777776531 1247899999998765 2333 3333444 89999998887642 344 68899
Q ss_pred ECCCCceEEEEe-CCCCCEEEEEEeCCCCEEEEEECC----CCEEEEEcCCCcc
Q psy4876 540 KYPSLVKVAELH-GHSARVLNLAMSPDETTVLSAGAD----ETLRLWKIFEKVK 588 (609)
Q Consensus 540 d~~~~~~~~~l~-~h~~~V~~l~~spdg~~L~s~s~D----g~I~iWdl~~~~~ 588 (609)
++..+ ....+. .+.+.+..+.+++++..|+....+ ++|..||+.+++.
T Consensus 356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 98744 444443 344567788888888876655544 7899999877653
No 211
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2.8e-09 Score=109.41 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=149.7
Q ss_pred eEEEEEccCC-CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 338 VCSVAWIQEG-YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 338 V~~v~~spdg-~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
..++.|+|++ .++++...++.|.+||..+++.. .+. ....+.+++| ++.+++ ++.+ .|.+||..++. . ..+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~-~-~~~ 124 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGV-L-TLH 124 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCC-E-EEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCc-E-EEE
Confidence 4578899975 55666667889999999887643 333 3467899998 455555 4444 49999988764 2 222
Q ss_pred ccC-----CCCeEEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 415 QNH-----TQEVCGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 415 ~~h-----~~~V~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
... ...+..++++|+|+++++... .+.|+.++ ++ + +..+..+......++|+|++..+++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g------~-~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG------K-VTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT------E-EEEEEEEESSEEEEEECTTSCEEEE
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC------c-EEEeeCCCcccCCeEEcCCCCEEEE
Confidence 211 235889999999997765542 24566666 33 2 2222223345679999999977777
Q ss_pred EEeccCCCeEEEEECC--CC-ce-----eEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC
Q psy4876 484 SGGGTADRHIYFWNVS--SG-AC-----LDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~--t~-~~-----~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
+. +.++.|.+||+. ++ .. ...+. ....+..++++++|.+.++.. .++.|.+|+. +++.+..+..+.
T Consensus 196 ~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~--~~~~v~~~d~-~g~~~~~i~~~~ 270 (326)
T 2ghs_A 196 VD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW--GEGAVDRYDT-DGNHIARYEVPG 270 (326)
T ss_dssp EE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE--TTTEEEEECT-TCCEEEEEECSC
T ss_pred EE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe--CCCEEEEECC-CCCEEEEEECCC
Confidence 65 367899999986 56 32 22222 234577899999998766633 5689999997 677777787777
Q ss_pred CCEEEEEEe-CCCCEEEEEECCC
Q psy4876 555 ARVLNLAMS-PDETTVLSAGADE 576 (609)
Q Consensus 555 ~~V~~l~~s-pdg~~L~s~s~Dg 576 (609)
..+.+++|+ +++..|+.++..+
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBCT
T ss_pred CCcEEEEEecCCCCEEEEEecCC
Confidence 789999998 8988776655443
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=7.2e-11 Score=123.70 Aligned_cols=172 Identities=9% Similarity=-0.050 Sum_probs=134.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-----------eEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEc
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-----------KCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDV 404 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-----------~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~ 404 (609)
..+..+++++...++++|+.++ +.||++.+.. ..... .+.. |..++|++.+|+++ .+|.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 3689999999999999999975 6669865332 11222 3556 99999988999998 8899999999
Q ss_pred CCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 405 RSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 405 ~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
++.. .......|...+.++.+.+. .+++++.||.|.+||+..+ .... +...|+|++|+|.| + +.
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~------~~~~----~~~~Vs~v~WSpkG--~-~v 177 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTK------STKQ----LAQNVTSFDVTNSQ--L-AV 177 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTC------CEEE----EEESEEEEEECSSE--E-EE
T ss_pred hhhh-ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCC------cccc----ccCCceEEEEcCCc--e-EE
Confidence 8865 45556678888998888764 3888999999999999976 2222 44689999999998 3 34
Q ss_pred EeccCCCeEEEEECCCCce--eEEE------c----CCCCeEEEEEcCCCCeEEEEE
Q psy4876 485 GGGTADRHIYFWNVSSGAC--LDSI------D----TKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~--~~~~------~----~~~~v~sl~~s~~g~~l~~~s 529 (609)
| ..||.+++|+...+.+ ..++ . +...|.++.|.+++.++++-.
T Consensus 178 g--~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 178 L--LKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp E--ETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred E--EcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 4 3799999999888776 5666 2 345899999999999998754
No 213
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=2e-09 Score=108.80 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=149.0
Q ss_pred EEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
-....|+++ + ++.+. .++.|+.||..+ +... .+.....+.+++++++|+
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~-------------------------~~~~---~~~~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFT-------------------------KQVQ---RVTMDAPVSSVALRQSGG 66 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTT-------------------------CCEE---EEECSSCEEEEEEBTTSS
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCC-------------------------CcEE---EEeCCCceEEEEECCCCC
Confidence 456889985 4 44444 468999999987 4432 222457799999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecC----CCCceEEEEec--CCEEEEEecC---------CeEEEEEcCCCCeeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGALAWN--TYILSSGSRC---------GNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~~--~~~L~sgs~d---------g~I~iwd~~~~~~~~~~ 413 (609)
+++ +. ++.|.+||..+++....... ....+..++++ ++++++.... ....+|.+..... ...
T Consensus 67 l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~ 143 (297)
T 3g4e_A 67 YVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKK 143 (297)
T ss_dssp EEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEE
T ss_pred EEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEE
Confidence 554 44 46799999988765433322 12457788884 6665544321 2234444443222 222
Q ss_pred EccCCCCeEEEEEccCCCEEEE-EeCCCcEEEEeCC--CCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLAS-GGNDNLLNIWSGV--PGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~las-gs~Dg~I~iwd~~--~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
+..+......++|+||++.|+. .+.++.|.+||+. ++.. ...+....+..+......++++++| +++++.. .+
T Consensus 144 ~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~-~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~--~~ 219 (297)
T 3g4e_A 144 YFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI-SNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACY--NG 219 (297)
T ss_dssp EEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE-EEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEE--TT
T ss_pred EeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc-cCcEEEEECCCCCCCCCeeEECCCC-CEEEEEc--CC
Confidence 3334456789999999987654 4557889999874 4421 0011223333344667899999998 5666543 57
Q ss_pred CeEEEEECCCCceeEEEcCC-CCeEEEEEc-CCCCeEEEEEe
Q psy4876 491 RHIYFWNVSSGACLDSIDTK-SQVCALLWN-SDYKELVSAHG 530 (609)
Q Consensus 491 g~I~iwd~~t~~~~~~~~~~-~~v~sl~~s-~~g~~l~~~sG 530 (609)
+.|.+||..+++.+..+... ..+++++|. |+++.|++++.
T Consensus 220 ~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 88999999999999988876 589999998 89888887664
No 214
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=5.6e-10 Score=118.46 Aligned_cols=264 Identities=9% Similarity=0.058 Sum_probs=177.2
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCe
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGT 358 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~ 358 (609)
+.|.++|..+ .+....... ...+ .++++|||++|+++. .++.
T Consensus 99 ~~VsVID~~t-------------------------~~vv~~I~v-G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 99 TQQFVIDGST-------------------------GRILGMTDG-GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp EEEEEEETTT-------------------------TEEEEEEEE-CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CeEEEEECCC-------------------------CEEEEEEEC-CCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 6899999988 444333333 3334 899999999888876 3678
Q ss_pred EEEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 359 VQLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
|.++|..+++.+..+.-. ......+.+ ++++|+++.. ++.|.+.|+.+. ..+..+.-.. . ....
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-kvv~~I~v~g--~--~~~~ 225 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-TFDRMLDVPD--C--YHIF 225 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT-EEEEEEECCS--E--EEEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC-eEEEEEEcCC--c--eeec
Confidence 999999999988877521 122345566 6788888764 578999999987 4555554321 1 2334
Q ss_pred cCC-CEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE-EEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee-
Q psy4876 428 PDG-RYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV-KAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL- 504 (609)
Q Consensus 428 pdg-~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~- 504 (609)
|+| ..+++.+.||.+.+.++..++...... ..+.....++ ..+.+.+++..++++. ..+.|.+.|+..+...
T Consensus 226 p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~--~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v 300 (426)
T 3c75_H 226 PASPTVFYMNCRDGSLARVDFADGETKVTNT--EVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATF 300 (426)
T ss_dssp EEETTEEEEEETTSSEEEEECCTTCCEEEEC--CCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEE
T ss_pred cCCCcEEEEEcCCCCEEEEECCCCcEEEEee--eeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEE
Confidence 433 556667778888888885442110000 1111111121 2356788888777764 5789999998755422
Q ss_pred -EEEcC-----------CCCeEEEEEcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeC
Q psy4876 505 -DSIDT-----------KSQVCALLWNSDYKELVSAHGF--------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSP 564 (609)
Q Consensus 505 -~~~~~-----------~~~v~sl~~s~~g~~l~~~sG~--------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~sp 564 (609)
..+.. ......++++++++.++++... ..+.|.++|..+.+.+..+... ....+|+|+|
T Consensus 301 ~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~sp 379 (426)
T 3c75_H 301 RAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQ 379 (426)
T ss_dssp CCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECC
T ss_pred eeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEcc
Confidence 11111 0122237899999988886431 1368999999999999988632 2578999999
Q ss_pred CCC-EEEEEE-CCCCEEEEEcCCCccchh
Q psy4876 565 DET-TVLSAG-ADETLRLWKIFEKVKSKK 591 (609)
Q Consensus 565 dg~-~L~s~s-~Dg~I~iWdl~~~~~~~k 591 (609)
||+ +++++. .++.|.++|+.+.+..+.
T Consensus 380 Dg~~~lyv~n~~s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 380 DAEPLLYALSAGTQTLHIYDAATGEELRS 408 (426)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence 999 888888 599999999999887655
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.4e-09 Score=110.42 Aligned_cols=226 Identities=10% Similarity=0.032 Sum_probs=154.0
Q ss_pred CCCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCee
Q psy4876 334 GNENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHK 410 (609)
Q Consensus 334 h~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~ 410 (609)
.........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++ ++++++...++.|.+|+.. +.
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--
Confidence 445677899999998 5666777899999998 444 44555566778899994 6766655556789999986 32
Q ss_pred EEEEccC-----CCCeEEEEEccCCCEEEE----EeC-------------CCcEEEEeCCCCCCCCCccceEeecCCccc
Q psy4876 411 VALLQNH-----TQEVCGLKWSPDGRYLAS----GGN-------------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAA 468 (609)
Q Consensus 411 ~~~~~~h-----~~~V~~l~~spdg~~las----gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 468 (609)
...+..+ ...+..++++++|+++++ |.. .+.|+.||..++. ... +. ....
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~------~~~-~~-~~~~ 189 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP------LQR-MA-DLDH 189 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC------CEE-EE-EESS
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc------EEE-Ee-cCCC
Confidence 2222111 134678999999998886 332 2568888876662 222 22 3345
Q ss_pred EEEEEEcCCCCcEEEEEeccC-----CCeEEEEECCCCcee--EEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 469 VKAIAWCPWSPNVLASGGGTA-----DRHIYFWNVSSGACL--DSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 469 V~~l~~sp~~~~llasggGs~-----Dg~I~iwd~~t~~~~--~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
...++|+|++..++++.. . .+.|.+||+..+... ..+. .......++++++|+..++ + .+.|.+|
T Consensus 190 p~gl~~spdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~---~~gv~~~ 263 (305)
T 3dr2_A 190 PNGLAFSPDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-S---GTGVCVF 263 (305)
T ss_dssp EEEEEECTTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-C---SSEEEEE
T ss_pred CcceEEcCCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-c---CCcEEEE
Confidence 688999999976766642 2 378999998765411 1111 1234567899999995443 1 3459999
Q ss_pred ECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE
Q psy4876 540 KYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL 580 (609)
Q Consensus 540 d~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i 580 (609)
+. .++.+..+..+. .+.+++|+++++.|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence 97 677777776555 5899999999998988887654443
No 216
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=1.4e-09 Score=115.39 Aligned_cols=247 Identities=12% Similarity=0.037 Sum_probs=168.2
Q ss_pred EEEecCCC--eEEEE----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec------CC
Q psy4876 274 LIDWSHFN--VLAVA----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE------GN 335 (609)
Q Consensus 274 ~l~wsp~~--lla~s----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------h~ 335 (609)
.+.++||+ ++++. .++.|.++|..+ .+......+. ..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t-------------------------~~vv~~I~v~g~~r~~~g 176 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFLVG 176 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-------------------------CCEEEEEEETTCCCCCBS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-------------------------CcEEEEEECCCccccccC
Confidence 48889986 33332 367899999988 4443333221 12
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVA 412 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~ 412 (609)
.....++|+|||++|+++.. ++.|.+.|+.+++.+..+..... ..+.. ....+++.+.||.+.+.+...+ ....
T Consensus 177 ~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~-~v~~ 253 (426)
T 3c75_H 177 TYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFADG-ETKV 253 (426)
T ss_dssp CCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECCTT-CCEE
T ss_pred CCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECCCC-cEEE
Confidence 34567899999999999874 57899999999999888874221 22222 3477778888999999998544 2332
Q ss_pred EE----ccCCCCe-EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------CcccEEEEEEcCCCCc
Q psy4876 413 LL----QNHTQEV-CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------HQAAVKAIAWCPWSPN 480 (609)
Q Consensus 413 ~~----~~h~~~V-~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~l~~sp~~~~ 480 (609)
.. .....++ ..+.|.+++..++..+..+.|.+.|+....... ......... .......++++|++..
T Consensus 254 ~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~r 332 (426)
T 3c75_H 254 TNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALTEAERADDWRPGGWQQTAYHRQSDR 332 (426)
T ss_dssp EECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSCTTTGGGTEEECSSSCEEEEGGGTE
T ss_pred EeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeeccccccccccccCCceeeEEcCCCCE
Confidence 21 1111111 235789998888887888999999987542100 000000000 0111223689999988
Q ss_pred EEEEEecc-------CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 481 VLASGGGT-------ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 481 llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
++++.... .++.|.++|+.+.+.+..+........+.|+++++ .++++ ...++.|.|+|..+++.+..+
T Consensus 333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 88764210 13689999999999999998877899999999999 67665 346899999999999999887
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=5.7e-09 Score=110.82 Aligned_cols=230 Identities=10% Similarity=-0.038 Sum_probs=152.9
Q ss_pred eEEEEEecCCC-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 271 YLNLIDWSHFN-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
....|+|++++ ++++.. ++.|++||..+ +.+..+... ..... ++|+++++
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-------------------------g~~~~~~~~--~~~~~-ia~~~~g~ 183 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-------------------------NKVTTVHPG--FKGGK-PAVTKDKQ 183 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-------------------------TEEEEEEET--CCBCB-CEECTTSS
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-------------------------CEEEEeecc--CCCCc-eeEecCCC
Confidence 35669999987 444443 58999999987 555444332 22233 99999999
Q ss_pred EEEEEeCCC--eEEEEeCCCCeeEEEe----cCCCCceEEEEec--CCEEEEEecCCeEEEEEcCCCCeeEEE---EccC
Q psy4876 349 MLGVGTSLG--TVQLWDVSAKKKCRTM----DGHDVRVGALAWN--TYILSSGSRCGNIVHHDVRSRDHKVAL---LQNH 417 (609)
Q Consensus 349 ~Lasgs~dg--~I~iwd~~~~~~~~~l----~~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~~~~~~~~---~~~h 417 (609)
.|+++..++ .|.+|+...+.....+ ......+.+++++ ...|+.+..++.|+.||..+....... ..++
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 999888766 7999998766544444 2245667788885 355666777889999999876422210 1122
Q ss_pred CCCe--EEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC---------------cccEEEEEEcCCCC
Q psy4876 418 TQEV--CGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH---------------QAAVKAIAWCPWSP 479 (609)
Q Consensus 418 ~~~V--~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---------------~~~V~~l~~sp~~~ 479 (609)
...- ..++|+|+ +.++++-..++.|+.|+.... +..+.++ -.....++++++|.
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 2222 39999995 656666666789999987642 1222222 23478999999986
Q ss_pred cEEEEEecc-CCCeEEEEECCCCceeEEEcC---------------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 480 NVLASGGGT-ADRHIYFWNVSSGACLDSIDT---------------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 480 ~llasggGs-~Dg~I~iwd~~t~~~~~~~~~---------------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
++++. + .++.|+.||+.++........ -.....+++++++..+++ ...++.|+.+++
T Consensus 336 -lyvad--~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 -FYIVD--GFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEE--TTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred -EEEEe--CCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 66664 4 588999999887765433322 135889999999765555 446777777654
No 218
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.21 E-value=9.6e-10 Score=119.58 Aligned_cols=305 Identities=10% Similarity=0.045 Sum_probs=206.2
Q ss_pred cccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccc------cc------------
Q psy4876 260 ILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKC------IQ------------ 321 (609)
Q Consensus 260 il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~------~~------------ 321 (609)
...+|+-.|+|| ++.++|..|.|+|+-+-+....+++-+|+++...-+... +.
T Consensus 5 ~~~~~g~~d~~~---------~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~ 75 (595)
T 1fwx_A 5 GSVAPGQLDDYY---------GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLA 75 (595)
T ss_dssp CCCCTTCCCSEE---------EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHH
T ss_pred ccCCCCCcccEE---------EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhh
Confidence 445677788888 345688899999999999888888888888766555421 10
Q ss_pred cccceeeeeeecCCCCeEEEEE---ccCCCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEE
Q psy4876 322 DNRAIDHLMDLEGNENVCSVAW---IQEGYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSS 392 (609)
Q Consensus 322 ~~~~~~~l~~~~h~~~V~~v~~---spdg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~s 392 (609)
..+.. .... .+..--.+++ .+||++|++... ++.|.+.|+.+.++...+.- .......+++ ++.++++
T Consensus 76 ~~g~~--~~~~-gd~hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~ 152 (595)
T 1fwx_A 76 ANGKR--IHDN-GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFC 152 (595)
T ss_dssp HTTCS--SCCC-CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEE
T ss_pred ccCce--eccc-CCCCccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEE
Confidence 01110 0011 1111233444 238888888765 45799999999998885542 2244666665 5778877
Q ss_pred Ee------------------cCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC--------------
Q psy4876 393 GS------------------RCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN-------------- 440 (609)
Q Consensus 393 gs------------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg-------------- 440 (609)
++ .++.+.+.|..+. .....+.--. ....++++|+|+++++.+.+.
T Consensus 153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~-~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKW-EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EECSCEESSCSSSSTTCGGGEEEEEEEEETTTT-EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred ecccccccCCCCcccccccccCceEEEEECCCC-eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 74 3467999999986 3555544222 456788999999998888543
Q ss_pred ------------------------cEEEEeCCCCCCCCCccc-eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 441 ------------------------LLNIWSGVPGQHTFSTQP-IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 441 ------------------------~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
.|.|.|..+... .. +..+... ....++.++|||+++++++. .+.+|.+
T Consensus 231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~----~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~--~s~~VsV 303 (595)
T 1fwx_A 231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS----SLFTRYIPIA-NNPHGCNMAPDKKHLCVAGK--LSPTVTV 303 (595)
T ss_dssp EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC----CSSEEEEEEE-SSCCCEEECTTSSEEEEECT--TSSBEEE
T ss_pred ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC----ceeEEEEecC-CCceEEEEcCCCCEEEEeCC--CCCeEEE
Confidence 366666665100 22 2333221 23467999999998888874 7899999
Q ss_pred EECCCCc------------eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEEeCC
Q psy4876 496 WNVSSGA------------CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS----------LVKVAELHGH 553 (609)
Q Consensus 496 wd~~t~~------------~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~----------~~~~~~l~~h 553 (609)
+|+.+.+ .+..+........++|+++| .++++ -+-+++|.+||+.. ...+..+..|
T Consensus 304 id~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 304 LDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp EEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred EECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 9999653 45566677789999999999 66555 56899999999976 5667777666
Q ss_pred CCCE-----EEEEEeCCCCEEEEEEC---CCCE----------EEEEcCCCc
Q psy4876 554 SARV-----LNLAMSPDETTVLSAGA---DETL----------RLWKIFEKV 587 (609)
Q Consensus 554 ~~~V-----~~l~~spdg~~L~s~s~---Dg~I----------~iWdl~~~~ 587 (609)
-.+- .++.++|||++|+++.. |..+ .++|+.+++
T Consensus 382 yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 382 YQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred cccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 4422 22345799999998864 4432 788996544
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=3e-08 Score=101.72 Aligned_cols=220 Identities=11% Similarity=-0.028 Sum_probs=144.5
Q ss_pred EEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.....|+++ + ++.++ .++.|++||..+ +.... +.....+.+++|+++|+
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~-------------------------~~~~~---~~~~~~v~~i~~~~dg~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLAS-------------------------GRKTV---HALPFMGSALAKISDSK 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTT-------------------------TEEEE---EECSSCEEEEEEEETTE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCC-------------------------CcEEE---EECCCcceEEEEeCCCe
Confidence 456899996 4 44444 578999999887 44332 22346799999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecC----CCCceEEEEec--CCEEEEEec------CCeEEEEEcCCCCeeEEEEcc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDG----HDVRVGALAWN--TYILSSGSR------CGNIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~~--~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~~ 416 (609)
++++ +.+ .|.+||..+++....... ....+..+.++ +.++++... .+.|..++ ++ . ...+..
T Consensus 103 l~v~-~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g-~-~~~~~~ 176 (326)
T 2ghs_A 103 QLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KG-K-VTKLFA 176 (326)
T ss_dssp EEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TT-E-EEEEEE
T ss_pred EEEE-ECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CC-c-EEEeeC
Confidence 7765 444 499999988765433321 12457888884 566554432 24566666 33 2 223333
Q ss_pred CCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCC--CC-CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCe
Q psy4876 417 HTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGV--PG-QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRH 492 (609)
Q Consensus 417 h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~--~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~ 492 (609)
+.....+++|+|||+.|+.+ +.++.|.+||+. ++ ... ....+..+......+..++++++|. ++++.. .++.
T Consensus 177 ~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~--~~~~ 252 (326)
T 2ghs_A 177 DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG-KAEVFIDSTGIKGGMDGSVCDAEGH-IWNARW--GEGA 252 (326)
T ss_dssp EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS-CCEEEEECTTSSSEEEEEEECTTSC-EEEEEE--TTTE
T ss_pred CCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc-CceEEEECCCCCCCCCeeEECCCCC-EEEEEe--CCCE
Confidence 33457899999999877555 456899999986 33 211 0112223333445678899999884 555432 4688
Q ss_pred EEEEECCCCceeEEEcCCC-CeEEEEEc-CCCCeEEEEEe
Q psy4876 493 IYFWNVSSGACLDSIDTKS-QVCALLWN-SDYKELVSAHG 530 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~~~-~v~sl~~s-~~g~~l~~~sG 530 (609)
|.+||. +++.+..+.... .+.+++|+ +++..|++++.
T Consensus 253 v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 999998 677777776554 79999998 88888877653
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=4.2e-09 Score=119.67 Aligned_cols=239 Identities=13% Similarity=0.045 Sum_probs=158.2
Q ss_pred eeEEEEEecCCC-eEEEEc--C----CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEE
Q psy4876 270 YYLNLIDWSHFN-VLAVAL--G----GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVA 342 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~--d----g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~ 342 (609)
+.+..++||||+ .||.+. + ..|++||+.+ +..... .+ +......++
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-------------------------g~~~~~-~~-~~~k~~~~~ 181 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-------------------------KQPLET-PL-KDVKFSGIS 181 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-------------------------CSEEEE-EE-EEEESCCCE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-------------------------CCCCcc-cc-CCceeccEE
Confidence 468889999997 555332 2 4799999998 554332 22 111135789
Q ss_pred EccCCCEEEEEeCCC-------------eEEEEeCCCCe----eEEEecC-CCCceEEEEe--cCCEEEEEec----CCe
Q psy4876 343 WIQEGYMLGVGTSLG-------------TVQLWDVSAKK----KCRTMDG-HDVRVGALAW--NTYILSSGSR----CGN 398 (609)
Q Consensus 343 ~spdg~~Lasgs~dg-------------~I~iwd~~~~~----~~~~l~~-h~~~V~~l~~--~~~~L~sgs~----dg~ 398 (609)
|+ ||+.|+.++.+. .|.+|++.++. ++..... |...+..+.| ++++|+.... ...
T Consensus 182 Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 182 WL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp EE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred Ee-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 99 999999888774 39999998754 2333333 4556778888 5776654432 248
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-C---CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-D---NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
|+++|+.++......+..+....... |+++|..|+..++ + +.|.++|+.++.. .....+..|...+. .|
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~----~~~~~l~~~~~~~~--~~ 333 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP----AHWRDLIPERQQVL--TV 333 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG----GGCEEEECCCSSCE--EE
T ss_pred EEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc----cccEEEecCCCCEE--EE
Confidence 99999987644455666666666555 6677776655554 3 5799999987631 12344555665554 88
Q ss_pred cCCCCcEEEEEeccCCC--eEEEEECCCCceeEEEcC--CCCeEEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q psy4876 475 CPWSPNVLASGGGTADR--HIYFWNVSSGACLDSIDT--KSQVCALLWNSDYKELVSAHGF--AQNQLIIWKYPSLVK 546 (609)
Q Consensus 475 sp~~~~llasggGs~Dg--~I~iwd~~t~~~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~--~dg~I~Iwd~~~~~~ 546 (609)
++++..|+++.. .++ .|++||+..+ ....+.. ...+..+.+++++..++....+ .-+.|+.||+.+++.
T Consensus 334 s~~g~~lv~~~~--~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 334 HSGSGYLFAEYM--VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEETTEEEEEEE--ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEECCEEEEEEE--ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 999887777653 444 7899998744 4455543 3457778888898888765421 237899999877653
No 221
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.15 E-value=7.8e-09 Score=116.95 Aligned_cols=239 Identities=10% Similarity=0.052 Sum_probs=164.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCC-C----Cce-EEEEecCCEEEEEec------CCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH-D----VRV-GALAWNTYILSSGSR------CGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~----~~V-~~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~ 413 (609)
++..|++++.|+.|..+|..+|+.+..+..+ . ..+ ......+..+++++. +|.|+.+|..++. .+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~-~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGE-RKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCc-EEEE
Confidence 4668888999999999999999998887754 2 111 112223455555553 6899999999985 4544
Q ss_pred EccCCC--------------------------------CeEEEEEccCCCEEEEEeCCC-------------------cE
Q psy4876 414 LQNHTQ--------------------------------EVCGLKWSPDGRYLASGGNDN-------------------LL 442 (609)
Q Consensus 414 ~~~h~~--------------------------------~V~~l~~spdg~~lasgs~Dg-------------------~I 442 (609)
+..... ....++++|++.+++.++.++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 432211 113578889888888887664 49
Q ss_pred EEEeCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC
Q psy4876 443 NIWSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS 511 (609)
Q Consensus 443 ~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~ 511 (609)
..+|..++ +.+..+.. |. .....+....+|. .+++.+ +.+|.|+++|..+|+.+..+....
T Consensus 286 ~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~--~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 286 VALDPDTG------KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA--PKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp EEECTTTC------CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSC
T ss_pred EEEECCCC------CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE--CCCCEEEEEECCCCCEeccccccc
Confidence 99999998 44443322 21 1122223333553 455554 589999999999999987665321
Q ss_pred ------------Ce------------------------EEEEEcCCCCeEEEEEec------------------------
Q psy4876 512 ------------QV------------------------CALLWNSDYKELVSAHGF------------------------ 531 (609)
Q Consensus 512 ------------~v------------------------~sl~~s~~g~~l~~~sG~------------------------ 531 (609)
.+ ..++|+|+...+++....
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 01 156889998888875431
Q ss_pred -----------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 532 -----------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 532 -----------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..+.|..||..+++.+..+. +..++....+..++.+++.++.||.|++||..+++...+...
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 12789999999999988875 334455666777888999999999999999999987765543
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.14 E-value=7.8e-08 Score=100.20 Aligned_cols=264 Identities=10% Similarity=0.016 Sum_probs=167.4
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC--------CCCeEEEEEccCCCEEEE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG--------NENVCSVAWIQEGYMLGV 352 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h--------~~~V~~v~~spdg~~Las 352 (609)
.+++++.++.|+.+|.++ ++..-...+.. ...+.+ ....++..|++
T Consensus 55 ~v~~~~~~g~v~a~d~~t-------------------------G~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v 108 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADD-------------------------GKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYI 108 (376)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEE
T ss_pred EEEEEcCCCeEEEEEccC-------------------------CceeeeecCccccccccccCccccc-CceEeCCEEEE
Confidence 366677788999999987 44332222211 222322 22234567888
Q ss_pred EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCe-----EEEEEc
Q psy4876 353 GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEV-----CGLKWS 427 (609)
Q Consensus 353 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s 427 (609)
++.++.|..+|..+++.+................+..++.++.++.|..+|..++. .+.......... ......
T Consensus 109 ~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~~~~~~~~~~~~~ 187 (376)
T 3q7m_A 109 GSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGA-VKWTVNLDMPSLSLRGESAPTTA 187 (376)
T ss_dssp EETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCC-EEEEEECCC-----CCCCCCEEE
T ss_pred EcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCc-EEEEEeCCCCceeecCCCCcEEE
Confidence 99999999999999998877665433333334456788889999999999998874 444443322111 112222
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcc--c--------E-EEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 428 PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQA--A--------V-KAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 428 pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~--------V-~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
+..+++++.++.|..+|..++ +.+........ . + ...... +..+++ + +.++.|..+
T Consensus 188 --~~~v~~g~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~-~--~~~g~l~~~ 254 (376)
T 3q7m_A 188 --FGAAVVGGDNGRVSAVLMEQG------QMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFA-L--AYNGNLTAL 254 (376)
T ss_dssp --TTEEEECCTTTEEEEEETTTC------CEEEEEECCC-----------CCCCCCEEE--TTEEEE-E--CTTSCEEEE
T ss_pred --CCEEEEEcCCCEEEEEECCCC------cEEEEEecccCCCCcccccccccCCCcEEE--CCEEEE-E--ecCcEEEEE
Confidence 446778888999999999988 34333321110 0 0 001111 233444 3 368999999
Q ss_pred ECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECC
Q psy4876 497 NVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 497 d~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~D 575 (609)
|..+|+.+....... ...+.. ++..+++++ .++.|..+|..+++.+..... ....+..... .+..|+.++.+
T Consensus 255 d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~~~--~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~ 327 (376)
T 3q7m_A 255 DLRSGQIMWKRELGS-VNDFIV--DGNRIYLVD--QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSE 327 (376)
T ss_dssp ETTTCCEEEEECCCC-EEEEEE--ETTEEEEEE--TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTT
T ss_pred ECCCCcEEeeccCCC-CCCceE--ECCEEEEEc--CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCC
Confidence 999999887766443 333433 355666643 689999999999998877652 2222333333 35678889999
Q ss_pred CCEEEEEcCCCccchh
Q psy4876 576 ETLRLWKIFEKVKSKK 591 (609)
Q Consensus 576 g~I~iWdl~~~~~~~k 591 (609)
|.|.++|..+++..-+
T Consensus 328 g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 328 GYLHWINVEDGRFVAQ 343 (376)
T ss_dssp SEEEEEETTTCCEEEE
T ss_pred CeEEEEECCCCcEEEE
Confidence 9999999988876543
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=1.5e-08 Score=104.69 Aligned_cols=241 Identities=9% Similarity=-0.005 Sum_probs=152.3
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEe--CCCeEEEEeCCCCeeEEEec-------CCCCceEEEEec--CCEEEE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMD-------GHDVRVGALAWN--TYILSS 392 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~~--~~~L~s 392 (609)
+.++.+.++. ..+..|+++++|+.+++.. .++.++||.+.+++. ..+. .|-..+..++++ +.++++
T Consensus 7 g~~~~v~~~~--~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 7 DRLEVVAELS--LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp -CCEEEEEES--SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred ceeEEEEEcC--CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 4556666653 6899999999999888764 234355565545543 3221 345678999995 444444
Q ss_pred Eec-----CCeEEEEEcCCCCeeEEEEcc------CCCCeEEEEEccCCCEE-EEEe---CCCcEEEEeCCCCCCCCCcc
Q psy4876 393 GSR-----CGNIVHHDVRSRDHKVALLQN------HTQEVCGLKWSPDGRYL-ASGG---NDNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 393 gs~-----dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~spdg~~l-asgs---~Dg~I~iwd~~~~~~~~~~~ 457 (609)
-.. ++.|.+||+.++. .+..+.. +...+..+++++++..+ ++.. .++.|.+||+.++.
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~-~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~------ 156 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQ-LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL------ 156 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTE-EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC------
T ss_pred cCCCCcCCCCeEEEEECCCCe-EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC------
Confidence 333 5789999998763 4444432 22456899999865454 5444 57899999998763
Q ss_pred ceEeecCC-----------------------------cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC---CCc---
Q psy4876 458 PIHSLSRH-----------------------------QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS---SGA--- 502 (609)
Q Consensus 458 ~~~~~~~h-----------------------------~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~---t~~--- 502 (609)
....+..| ...+..|+|+|++..++++. .....|..++.. .+.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~~~~~~~~~~~~~ 234 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRIKSADLSNLQLTD 234 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEEEHHHHTCTTCCH
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEEEHHHhcCCCCCh
Confidence 22211111 12368899999997676664 244566666642 111
Q ss_pred -----eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC-CCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 503 -----CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG-HSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 503 -----~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
.+...........++++++|..+++ ...++.|.+||..+++....... +...+.+++|.++|.++++.+..+
T Consensus 235 ~~~~~~~~~~g~~g~pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 235 AELGSKIERYSEKPICDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH 312 (343)
T ss_dssp HHHHTTCEEEEECCSCSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred hhhhcceEecccCCCCceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence 0111222335678999999987766 45789999999856654333322 245689999999998888876544
Q ss_pred CE
Q psy4876 577 TL 578 (609)
Q Consensus 577 ~I 578 (609)
.+
T Consensus 313 ~~ 314 (343)
T 2qe8_A 313 HS 314 (343)
T ss_dssp GS
T ss_pred cc
Confidence 33
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.12 E-value=1.5e-08 Score=102.61 Aligned_cols=225 Identities=12% Similarity=0.088 Sum_probs=146.4
Q ss_pred EEEEEecCCC--eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFN--VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~--lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~ 348 (609)
.....|++++ ++.++ .++.|+.|+. + +....+.. +...+..++++++|+
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~-------------------------g~~~~~~~--~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-D-------------------------GTVDVLLD--ATAFTNGNAVDAQQR 98 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-T-------------------------SCEEEEEE--SCSCEEEEEECTTSC
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-C-------------------------CCEEEEeC--CCCccceeeECCCCC
Confidence 5678999985 44444 4689999987 3 33322221 556789999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCC----CCceEEEEe--cCCEEEE----Eec-------------CCeEEEEEcC
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGH----DVRVGALAW--NTYILSS----GSR-------------CGNIVHHDVR 405 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~--~~~~L~s----gs~-------------dg~I~iwd~~ 405 (609)
++++...++.|.+|+.. ++........ ...+..+++ ++.++++ |.. .+.|..+|..
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 77665566789999986 5433222111 134566778 4677765 332 2567788876
Q ss_pred CCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCC
Q psy4876 406 SRDHKVALLQNHTQEVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWS 478 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~ 478 (609)
++. ... +. .......++|+||++.|+++... +.|++|++..+. . .....+ .........++++++|
T Consensus 178 ~g~-~~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l---~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 178 GSP-LQR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-L---HDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp SCC-CEE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-E---EEEEEEECCSSSCCCSEEECTTS
T ss_pred CCc-EEE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-c---cCCeEEEECCCCCCCeEEECCCC
Confidence 553 222 22 34567899999999988777665 689999987541 0 001111 1123345678899988
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
. ++++. .+.|.+||. .++.+..+.....+.+++|+++++.|++++ .+.|..+++
T Consensus 251 ~-lwv~~----~~gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~---~~~l~~~~~ 304 (305)
T 3dr2_A 251 W-LWSSS----GTGVCVFDS-DGQLLGHIPTPGTASNCTFDQAQQRLFITG---GPCLWMLPL 304 (305)
T ss_dssp C-EEECC----SSEEEEECT-TSCEEEEEECSSCCCEEEECTTSCEEEEEE---TTEEEEEEC
T ss_pred C-EEEec----CCcEEEECC-CCCEEEEEECCCceeEEEEeCCCCEEEEEc---CCeEEEEEC
Confidence 5 55542 345999998 577888887766789999999999888864 345554443
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.09 E-value=1.1e-07 Score=99.07 Aligned_cols=259 Identities=12% Similarity=0.021 Sum_probs=163.1
Q ss_pred EecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC
Q psy4876 276 DWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 276 ~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~ 355 (609)
....+.+++++.++.|+.+|..+ ++..-...+. ......... .+..+++++.
T Consensus 100 ~~~~~~v~v~~~~g~l~a~d~~t-------------------------G~~~W~~~~~-~~~~~~p~~--~~~~v~v~~~ 151 (376)
T 3q7m_A 100 TVSGGHVYIGSEKAQVYALNTSD-------------------------GTVAWQTKVA-GEALSRPVV--SDGLVLIHTS 151 (376)
T ss_dssp EEETTEEEEEETTSEEEEEETTT-------------------------CCEEEEEECS-SCCCSCCEE--ETTEEEEECT
T ss_pred eEeCCEEEEEcCCCEEEEEECCC-------------------------CCEEEEEeCC-CceEcCCEE--ECCEEEEEcC
Confidence 33344577788899999999988 5543322222 111111122 2457888999
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCce-----EEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-------CeEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRV-----GALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ-------EVCG 423 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V-----~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-------~V~~ 423 (609)
++.|..+|..+++.+.......... ......+..++.+..+|.|..+|..++. .+........ .+..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~ 230 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQ-MIWQQRISQATGSTEIDRLSD 230 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEETTTCC-EEEEEECCC-----------C
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCc-EEEEEecccCCCCcccccccc
Confidence 9999999999998887766433221 2233346678888889999999998874 4444332110 0000
Q ss_pred EEEcc--CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 424 LKWSP--DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 424 l~~sp--dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+.-.| .+..++.++.++.|..+|..++ +.+.... ......+... +..+++.. .++.|..+|..+|
T Consensus 231 ~~~~p~~~~~~v~~~~~~g~l~~~d~~tG------~~~w~~~--~~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG 297 (376)
T 3q7m_A 231 VDTTPVVVNGVVFALAYNGNLTALDLRSG------QIMWKRE--LGSVNDFIVD--GNRIYLVD---QNDRVMALTIDGG 297 (376)
T ss_dssp CCCCCEEETTEEEEECTTSCEEEEETTTC------CEEEEEC--CCCEEEEEEE--TTEEEEEE---TTCCEEEEETTTC
T ss_pred cCCCcEEECCEEEEEecCcEEEEEECCCC------cEEeecc--CCCCCCceEE--CCEEEEEc---CCCeEEEEECCCC
Confidence 11111 2457788888999999999988 4444433 2234444443 34455543 6899999999999
Q ss_pred ceeEEEcC-C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE-EEEeCCCCEEEEEECCCCE
Q psy4876 502 ACLDSIDT-K-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAMSPDETTVLSAGADETL 578 (609)
Q Consensus 502 ~~~~~~~~-~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~L~s~s~Dg~I 578 (609)
+.+..... . ..+..... .+..+++ +..+|.|+++|..+++.+.........+.. ... .+..|+.++.||.|
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v--~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l 371 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVV--GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTV 371 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEE--ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEE--EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEE
Confidence 98877652 2 22222333 2456666 447899999999999988877654333322 222 25578889999999
Q ss_pred EEEE
Q psy4876 579 RLWK 582 (609)
Q Consensus 579 ~iWd 582 (609)
..|+
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9987
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.07 E-value=3.9e-08 Score=111.46 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=158.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCC--C---CceE-EEEecCCEEEEEe------cCCeEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGH--D---VRVG-ALAWNTYILSSGS------RCGNIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h--~---~~V~-~l~~~~~~L~sgs------~dg~I~iwd~~~~~~~~~~ 413 (609)
.+..|++++.|+.|..+|..+|+.+-.+... . ..+. +....+..++.++ .+|.|+.||..++. .+..
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~ 198 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGK-EAWR 198 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCc-EEEE
Confidence 3568888999999999999999988776542 1 1111 1112234444443 36899999999985 4444
Q ss_pred EccC-------------------------------CCCeEEEEEccCCCEEEEEeCCCc-------------------EE
Q psy4876 414 LQNH-------------------------------TQEVCGLKWSPDGRYLASGGNDNL-------------------LN 443 (609)
Q Consensus 414 ~~~h-------------------------------~~~V~~l~~spdg~~lasgs~Dg~-------------------I~ 443 (609)
+... ......++++|++.++++++.++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 4310 011125788898889999887763 99
Q ss_pred EEeCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC-
Q psy4876 444 IWSGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS- 511 (609)
Q Consensus 444 iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~- 511 (609)
.||..++ +.+..+.. |. ..+.......+|. .+++.+ +.+|.++++|..+|+.+.......
T Consensus 279 AlD~~TG------~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~ 350 (689)
T 1yiq_A 279 AVNADTG------EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA--PKNGFFYVIDRATGELLSAKGIVPQ 350 (689)
T ss_dssp EEETTTC------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCC
T ss_pred EEEccCC------ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE--CCCCeEEEEECCCCCEecccccccc
Confidence 9999999 44444432 21 1121122222342 245554 589999999999999875432211
Q ss_pred ---------------------------------------CeEEEEEcCCCCeEEEEEec---------------------
Q psy4876 512 ---------------------------------------QVCALLWNSDYKELVSAHGF--------------------- 531 (609)
Q Consensus 512 ---------------------------------------~v~sl~~s~~g~~l~~~sG~--------------------- 531 (609)
....++|+|+...+++....
T Consensus 351 ~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (689)
T 1yiq_A 351 SWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMY 430 (689)
T ss_dssp SSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSC
T ss_pred ccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccc
Confidence 11236888888888775321
Q ss_pred ----------------------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccc
Q psy4876 532 ----------------------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKS 589 (609)
Q Consensus 532 ----------------------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~ 589 (609)
.+|.|..||+.+++.+..+..+. .+....+...+.+|+.++.||.|+.||..+++..
T Consensus 431 ~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 431 QLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 03789999999999988876553 3344466678889999999999999999999876
Q ss_pred hhhh
Q psy4876 590 KKKE 593 (609)
Q Consensus 590 ~k~~ 593 (609)
-+.+
T Consensus 510 w~~~ 513 (689)
T 1yiq_A 510 WEQP 513 (689)
T ss_dssp EEEE
T ss_pred eeee
Confidence 5443
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=2.1e-08 Score=101.93 Aligned_cols=219 Identities=10% Similarity=-0.014 Sum_probs=150.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLK 425 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 425 (609)
+..|.+++.++.|..+|.. ++.......+...+.++..+ ...|+.++.++.|..+|.. + .....+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g-~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G-TEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S-CEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C-CEeEEEecCCCceeeeE
Confidence 5567788888999999998 77776666555556666664 5567778888999999998 4 35555555556677788
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeE
Q psy4876 426 WSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLD 505 (609)
Q Consensus 426 ~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~ 505 (609)
+.++|.+++. + +.|..|| .++ ..+..+......+.++...+++ .+++.. .++.|..+|. +++.+.
T Consensus 184 ~d~~g~l~v~-t--~~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g-~l~v~t---~~~gl~~~~~-~g~~~~ 248 (330)
T 3hxj_A 184 IGKDGTIYFG-S--DKVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDG-TIYVTS---LDGHLYAINP-DGTEKW 248 (330)
T ss_dssp ECTTCCEEEE-S--SSEEEEC-TTS------CEEEEECCSSCCCSCCEECTTS-CEEEEE---TTTEEEEECT-TSCEEE
T ss_pred EcCCCEEEEE-e--CEEEEEC-CCC------cEEEEEccCCcceeceEECCCC-eEEEEc---CCCeEEEECC-CCCEeE
Confidence 8888875544 4 7899999 555 4444554455667788888876 455532 5788888874 566666
Q ss_pred EEcCCC-CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 506 SIDTKS-QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 506 ~~~~~~-~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.... .+..+...+++.. .+ +..++.|..+|. +++.+..+......+.++....+|. |..++.+|.+++....
T Consensus 249 ~~~~~~~~~~~~~~~~~g~l-~v--~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 249 RFKTGKRIESSPVIGNTDTI-YF--GSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECSSCCCSCCEECTTSCE-EE--ECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred EeeCCCCccccceEcCCCeE-EE--ecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 665443 3445566656654 44 336789999995 7777777765566677788878886 5668899999998876
Q ss_pred CCcc
Q psy4876 585 EKVK 588 (609)
Q Consensus 585 ~~~~ 588 (609)
..++
T Consensus 324 ~~~~ 327 (330)
T 3hxj_A 324 EHHH 327 (330)
T ss_dssp ----
T ss_pred cccc
Confidence 5443
No 228
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.04 E-value=5.9e-07 Score=88.88 Aligned_cols=219 Identities=10% Similarity=0.032 Sum_probs=146.3
Q ss_pred CCeEEEEEccCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
..+.+++|++++..|+.+. .++.|.+++.........+.........++++ +. ++++-...+.|.++++.... ..
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EE
Confidence 4578999999776665554 56899999997655444443333567788884 34 44455567889999987543 22
Q ss_pred EEEccCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggG 487 (609)
............++++|++..|..+.. .+.|..+++... ....+ .........+++++++..++++..
T Consensus 115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-------~~~~~~~~~~~~P~gia~d~~~~~lyv~d~- 186 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-------NRRILAQDNLGLPNGLTFDAFSSQLCWVDA- 186 (267)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-------CCEEEECTTCSCEEEEEEETTTTEEEEEET-
T ss_pred EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-------CcEEEEECCCCCCcEEEEcCCCCEEEEEEC-
Confidence 222222256789999997666655554 368888888643 11122 123345789999998878877763
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCC
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDE 566 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg 566 (609)
..+.|.++|+........+........++.. +..++++ ....+.|.++|..+++.+..+.... .....+++.|++
T Consensus 187 -~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~ 262 (267)
T 1npe_A 187 -GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262 (267)
T ss_dssp -TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred -CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence 6789999999865444444444455677654 5566665 3467899999999999888885432 347788888886
Q ss_pred C
Q psy4876 567 T 567 (609)
Q Consensus 567 ~ 567 (609)
.
T Consensus 263 ~ 263 (267)
T 1npe_A 263 C 263 (267)
T ss_dssp C
T ss_pred C
Confidence 5
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=6.9e-09 Score=108.20 Aligned_cols=251 Identities=11% Similarity=-0.056 Sum_probs=161.9
Q ss_pred EEEecCCC-eEEEE-----------cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C-----C
Q psy4876 274 LIDWSHFN-VLAVA-----------LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G-----N 335 (609)
Q Consensus 274 ~l~wsp~~-lla~s-----------~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h-----~ 335 (609)
.+.++||+ .+.++ .++.|.+||..+ ++......+. . .
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------------------------~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------------------------FLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------------------------CCEEEEEEETTSCSCCBS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------------------------CCEEEEEECCCccccccC
Confidence 47888986 33333 268899999998 4443333331 0 1
Q ss_pred CCeEEEEEccCCCEEEEEeC--CCeEEE--EeCCCCeeEEEecCCCCceEEEEec-CCEEEEEecCCeEEEEEcCC----
Q psy4876 336 ENVCSVAWIQEGYMLGVGTS--LGTVQL--WDVSAKKKCRTMDGHDVRVGALAWN-TYILSSGSRCGNIVHHDVRS---- 406 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~--dg~I~i--wd~~~~~~~~~l~~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~---- 406 (609)
.....++++|||++|+++.. +..|.+ +|+.+ +..+..... ..+..+ ...+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 34568999999999998874 457888 99877 444432111 112233 45666777899998889876
Q ss_pred CCeeEEE----EccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------C---cccEEEE
Q psy4876 407 RDHKVAL----LQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------H---QAAVKAI 472 (609)
Q Consensus 407 ~~~~~~~----~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h---~~~V~~l 472 (609)
..+.... +.-...+. . ++++..++..+. +.|.+.|+..... ..+..+.. + ......+
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v 269 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMV 269 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCE
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc----eEEEEEEeccccccccccccCcceee
Confidence 2222110 11112233 3 666666666667 9999999875421 11111110 0 1111226
Q ss_pred EEcCCCCcEEEEEecc-C-----CCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q psy4876 473 AWCPWSPNVLASGGGT-A-----DRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK 546 (609)
Q Consensus 473 ~~sp~~~~llasggGs-~-----Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~ 546 (609)
+++|++..++++.... . ++.+.++|+.+++.+..+..+.....++|+++|+.++++.+..++.|.++|..+++.
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 8999998888764200 1 235669999999999998877789999999999987776554589999999999999
Q ss_pred EEEEeCCCCCEEEEEEeC
Q psy4876 547 VAELHGHSARVLNLAMSP 564 (609)
Q Consensus 547 ~~~l~~h~~~V~~l~~sp 564 (609)
+..+..... ...+++.+
T Consensus 350 v~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 350 QSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEECCCCSC-CCEEECCC
T ss_pred EEEEECCCC-CCEEEeec
Confidence 998875543 35666543
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.01 E-value=8.6e-09 Score=107.45 Aligned_cols=260 Identities=8% Similarity=-0.047 Sum_probs=167.0
Q ss_pred eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe----------CCCeE
Q psy4876 290 SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT----------SLGTV 359 (609)
Q Consensus 290 ~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs----------~dg~I 359 (609)
.|.+.|..+ ++....... ...+ .+.++|||++++++. .++.|
T Consensus 47 ~vsvID~~t-------------------------~~v~~~i~v-G~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~V 98 (368)
T 1mda_H 47 ENWVSCAGC-------------------------GVTLGHSLG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYV 98 (368)
T ss_dssp EEEEEETTT-------------------------TEEEEEEEE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEE
T ss_pred eEEEEECCC-------------------------CeEEEEEeC-CCCC--ceEECCCCCEEEEEcccccccccCCCCCEE
Confidence 788999988 554433333 3344 799999999999886 36789
Q ss_pred EEEeCCCCeeEEEecCC-------CCceEEEEe--cCCEEEEEec--CCeEEE--EEcCCCCeeEEEEccCCCCeEEEEE
Q psy4876 360 QLWDVSAKKKCRTMDGH-------DVRVGALAW--NTYILSSGSR--CGNIVH--HDVRSRDHKVALLQNHTQEVCGLKW 426 (609)
Q Consensus 360 ~iwd~~~~~~~~~l~~h-------~~~V~~l~~--~~~~L~sgs~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~ 426 (609)
.+||+.+++.+.++..+ ......+++ ++++++++.. +..|.+ +|..+ +..+.. .+. +.+
T Consensus 99 sviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~ 170 (368)
T 1mda_H 99 EVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHI 170 (368)
T ss_dssp EEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCC
T ss_pred EEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEE
Confidence 99999999999988643 122345566 6788887764 456888 88865 233321 111 123
Q ss_pred ccCC-CEEEEEeCCCcEEEEeCCC-----CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 427 SPDG-RYLASGGNDNLLNIWSGVP-----GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 427 spdg-~~lasgs~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.|+| ..+++.+.||.+.+.|+.. ++...... ..+.....+. . .+++..++.+. . +.+.+.|+.+
T Consensus 171 ~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t--~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~ 240 (368)
T 1mda_H 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT--GAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPA 240 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC--TTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCS
T ss_pred ccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee--eeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCC
Confidence 3544 3455566788888888876 31100000 0111122333 3 55565666553 5 8999999875
Q ss_pred Cc--eeEEEcCC-----------CCeEEEEEcCCCCeEEEEEe-c-C-----CCeEEEEECCCCceEEEEeCCCCCEEEE
Q psy4876 501 GA--CLDSIDTK-----------SQVCALLWNSDYKELVSAHG-F-A-----QNQLIIWKYPSLVKVAELHGHSARVLNL 560 (609)
Q Consensus 501 ~~--~~~~~~~~-----------~~v~sl~~s~~g~~l~~~sG-~-~-----dg~I~Iwd~~~~~~~~~l~~h~~~V~~l 560 (609)
+. .+..+... .....++++++++.++++.. . . .+.+.++|..+.+.+..+.... ...+|
T Consensus 241 ~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi 319 (368)
T 1mda_H 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAI 319 (368)
T ss_dssp SCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEE
T ss_pred CcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceE
Confidence 43 22222211 11122789999999988643 2 1 2356699999999988876443 58899
Q ss_pred EEeCCCC-EEEEEE-CCCCEEEEEcCCCccchhhhhhc
Q psy4876 561 AMSPDET-TVLSAG-ADETLRLWKIFEKVKSKKKEIKN 596 (609)
Q Consensus 561 ~~spdg~-~L~s~s-~Dg~I~iWdl~~~~~~~k~~~~~ 596 (609)
+|+|||+ .+++.. .++.|.++|+.+.+..+......
T Consensus 320 ~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 320 IAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred EECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCC
Confidence 9999998 556666 59999999999988776554433
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.01 E-value=5.4e-08 Score=110.31 Aligned_cols=213 Identities=14% Similarity=0.139 Sum_probs=136.9
Q ss_pred CCeEEEEeCCCCeeEEEecCC--C-----------------------------CceEEEEec--CCEEEEEecCCe----
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGH--D-----------------------------VRVGALAWN--TYILSSGSRCGN---- 398 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h--~-----------------------------~~V~~l~~~--~~~L~sgs~dg~---- 398 (609)
+|.|..||..+|+.+-.+... . .....++++ ..+++.+..++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~ 261 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP 261 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence 689999999999988766421 0 001135553 578888887764
Q ss_pred ---------------EEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEeCCCCC
Q psy4876 399 ---------------IVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDGR---YLASGGNDNLLNIWSGVPGQ 451 (609)
Q Consensus 399 ---------------I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasgs~Dg~I~iwd~~~~~ 451 (609)
|..+|..++. .+..++. |. ..+.......+|+ .++.++.+|.|+++|..+++
T Consensus 262 ~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 262 KWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 9999999985 5555543 21 1222223333665 78899999999999999984
Q ss_pred CCCCccc-----eEe-----------------ecCCcc-----------cEEEEEEcCCCCcEEEEEe------------
Q psy4876 452 HTFSTQP-----IHS-----------------LSRHQA-----------AVKAIAWCPWSPNVLASGG------------ 486 (609)
Q Consensus 452 ~~~~~~~-----~~~-----------------~~~h~~-----------~V~~l~~sp~~~~llasgg------------ 486 (609)
....... ... +..... .-..++++|+...+++...
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 3210000 000 000000 0112678887654443211
Q ss_pred ------------c------------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeE
Q psy4876 487 ------------G------------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQL 536 (609)
Q Consensus 487 ------------G------------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I 536 (609)
| ..++.|+.||+.+|+.+..+..+..+..-.+...+..+++ |..|+.|
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcE
Confidence 0 0148899999999999988877665555566777888887 5589999
Q ss_pred EEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEE
Q psy4876 537 IIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLS 571 (609)
Q Consensus 537 ~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s 571 (609)
+.||..+++.+..+....+. ..-+.|..+|+.+++
T Consensus 499 ~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 499 IAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999999999988754322 244677788874443
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.01 E-value=2.7e-07 Score=97.19 Aligned_cols=218 Identities=17% Similarity=0.138 Sum_probs=145.4
Q ss_pred cCCCEEEE-EeCCCeEEEEeCCCC----eeEEEecC-------CCCceEEEEe--cCCEEEEEecC------CeEEEEEc
Q psy4876 345 QEGYMLGV-GTSLGTVQLWDVSAK----KKCRTMDG-------HDVRVGALAW--NTYILSSGSRC------GNIVHHDV 404 (609)
Q Consensus 345 pdg~~Las-gs~dg~I~iwd~~~~----~~~~~l~~-------h~~~V~~l~~--~~~~L~sgs~d------g~I~iwd~ 404 (609)
+++++|++ |..++.|.|+|+.+. +..+++.. ....-..+.. ++ +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 77877776 455678999999765 66666630 1112222333 45 66666555 78999999
Q ss_pred CCCCeeEEEEccCC---CCeEEEEEccCCCEEEEEe-------------------CCCcEEEEeCCCCCCCCCccceEee
Q psy4876 405 RSRDHKVALLQNHT---QEVCGLKWSPDGRYLASGG-------------------NDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 405 ~~~~~~~~~~~~h~---~~V~~l~~spdg~~lasgs-------------------~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
.+.+ .+..+.... ..-..+.|+|+++.+++.. .+..|.+||+.++ +.+.++
T Consensus 172 ~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~------k~~~tI 244 (462)
T 2ece_A 172 YSFE-PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR------KRIHSL 244 (462)
T ss_dssp TTCC-EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT------EEEEEE
T ss_pred CCCe-EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC------cEeeEE
Confidence 9874 666665221 1233578899999888874 3689999999976 555555
Q ss_pred cCC--cccEEEEEE--cCCCCcEEEEEecc-----CCCeEEEEECCCCce--eEEE--cC-----------------CCC
Q psy4876 463 SRH--QAAVKAIAW--CPWSPNVLASGGGT-----ADRHIYFWNVSSGAC--LDSI--DT-----------------KSQ 512 (609)
Q Consensus 463 ~~h--~~~V~~l~~--sp~~~~llasggGs-----~Dg~I~iwd~~t~~~--~~~~--~~-----------------~~~ 512 (609)
... ......+.| +|+++..++++ . .+++|.+|....++. ...+ .. ...
T Consensus 245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~--e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 245 TLGEENRMALELRPLHDPTKLMGFINM--VVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp ESCTTEEEEEEEEECSSTTCCEEEEEE--EEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred ecCCCCCccceeEeeECCCCCEEEEEE--eeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 442 123445655 99998777765 3 567888776654431 1111 11 245
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceEEEEeCCC--------------CCEEEEEEeCCCCEEEEEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPS---LVKVAELHGHS--------------ARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~---~~~~~~l~~h~--------------~~V~~l~~spdg~~L~s~s 573 (609)
...|.+++||++|+++.. ..+.|.+||+.. .+.+..+.... +.-..++++|||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLW-GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEET-TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeC-CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 788999999999998754 578999999852 34555553220 1357899999999999988
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=7.4e-08 Score=108.93 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=173.5
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCC----CCeEEEEEccCCCEEEEEeC
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGN----ENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~----~~V~~v~~spdg~~Lasgs~ 355 (609)
+.+++++.|+.|+.+|..+ ++..-....... ..+.+.-.. .+..+++++.
T Consensus 129 ~~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~ 182 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAAT-------------------------GKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNG 182 (677)
T ss_dssp TEEEEECTTSEEEEEETTT-------------------------CCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCB
T ss_pred CEEEEEcCCCEEEEEECCC-------------------------CCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEec
Confidence 4466777899999999988 443222222100 111111111 2345555553
Q ss_pred ------CCeEEEEeCCCCeeEEEecCCCCc--------------------------------eEEEEe--cCCEEEEEec
Q psy4876 356 ------LGTVQLWDVSAKKKCRTMDGHDVR--------------------------------VGALAW--NTYILSSGSR 395 (609)
Q Consensus 356 ------dg~I~iwd~~~~~~~~~l~~h~~~--------------------------------V~~l~~--~~~~L~sgs~ 395 (609)
+|.|+.||..+|+.+..+...... ...+++ ++..++.+..
T Consensus 183 ~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~ 262 (677)
T 1kb0_A 183 GAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG 262 (677)
T ss_dssp CTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECC
T ss_pred ccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECC
Confidence 689999999999988776542211 123455 4577887776
Q ss_pred CC-------------------eEEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCC---CEEEEEeCCCcEEE
Q psy4876 396 CG-------------------NIVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDG---RYLASGGNDNLLNI 444 (609)
Q Consensus 396 dg-------------------~I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg---~~lasgs~Dg~I~i 444 (609)
++ .|..+|..++. .+..++. |. ....-+....+| ..+++++.+|.|++
T Consensus 263 ~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~ 341 (677)
T 1kb0_A 263 NGSPWSHKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV 341 (677)
T ss_dssp CEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCccccCCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence 64 59999999985 5555442 21 122233444477 68999999999999
Q ss_pred EeCCCCCCCCCccceEeecCC-----------cccE------------------------EEEEEcCCCCcEEEEEe---
Q psy4876 445 WSGVPGQHTFSTQPIHSLSRH-----------QAAV------------------------KAIAWCPWSPNVLASGG--- 486 (609)
Q Consensus 445 wd~~~~~~~~~~~~~~~~~~h-----------~~~V------------------------~~l~~sp~~~~llasgg--- 486 (609)
+|..+++ .+..+... ..++ ..++++|++..+++...
T Consensus 342 lD~~tG~------~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~ 415 (677)
T 1kb0_A 342 LDRTNGK------FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVP 415 (677)
T ss_dssp EETTTCC------EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECC
T ss_pred EECCCCC------EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcc
Confidence 9999984 33322211 0011 14678887765554321
Q ss_pred -----------c--------------------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 487 -----------G--------------------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 487 -----------G--------------------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
| ...+.|..||+.+++.+..+.....+....+...+..+++
T Consensus 416 ~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~-- 493 (677)
T 1kb0_A 416 VNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-- 493 (677)
T ss_dssp CEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--
T ss_pred eeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--
Confidence 0 0127899999999999988877666666667778888887
Q ss_pred ecCCCeEEEEECCCCceEEEEeCCC-CCEEEEEEeCCCCEEEEE-EC----------------CCCEEEEEcCC
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHGHS-ARVLNLAMSPDETTVLSA-GA----------------DETLRLWKIFE 585 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~L~s~-s~----------------Dg~I~iWdl~~ 585 (609)
+..++.+++||..+++.+..+.... ....-+.|..+|+.++.. +. .+.+.+|.+..
T Consensus 494 g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred ECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 4589999999999999999886433 233445667888755443 22 36888888874
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=2.7e-10 Score=119.38 Aligned_cols=201 Identities=12% Similarity=0.020 Sum_probs=112.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC-CeE
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ-EVC 422 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 422 (609)
++..|++++.||.|..||..+|+.+..+.. ..+.+..+ ++.++++++.||.|+.||..+++ .+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-GLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-CSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-eeeeeeccCccccc
Confidence 567899999999999999999999888876 33333222 56677778899999999998764 3444432211 110
Q ss_pred -EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 -GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 -~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+..+. ++..+++|+.|+.|+.||..++ +.+..+..+. ...++|++..+++ + +.|+.|+.||..+|
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG------~~~w~~~~~~----~~~~~p~~~~v~~-~--~~dg~v~a~d~~tG 150 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTG------EKQQTLSSAF----ADSLSPSTSLLYL-G--RTEYTITMYDTKTR 150 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEE-E--EEEEEEECCCSSSS
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCC------cEEEEecCCC----cccccccCCEEEE-E--ecCCEEEEEECCCC
Confidence 01111 3456788888999999999998 4444444332 2345666654444 4 36899999999999
Q ss_pred ceeEEEcCCCCeEEEEEcCCC---CeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEE-EEEeCCCC
Q psy4876 502 ACLDSIDTKSQVCALLWNSDY---KELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLN-LAMSPDET 567 (609)
Q Consensus 502 ~~~~~~~~~~~v~sl~~s~~g---~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~ 567 (609)
+.+..+.... ....++..+. ..+++ +..+|.|+.||..+++.+..+.. ..++.. ..++++|.
T Consensus 151 ~~~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 151 ELRWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp SCCCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred CEEEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 8776654221 1222333332 45555 34799999999999998887763 344433 34455664
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.92 E-value=5.6e-07 Score=89.02 Aligned_cols=203 Identities=13% Similarity=0.056 Sum_probs=142.3
Q ss_pred eeeeeeecCCC--CeEEEEEccCCCEEEEEeC---CCeEEEEeCCCCeeEEEecCCC-CceEEEEecCCEEEEE-ecCCe
Q psy4876 326 IDHLMDLEGNE--NVCSVAWIQEGYMLGVGTS---LGTVQLWDVSAKKKCRTMDGHD-VRVGALAWNTYILSSG-SRCGN 398 (609)
Q Consensus 326 ~~~l~~~~h~~--~V~~v~~spdg~~Lasgs~---dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~~~~~L~sg-s~dg~ 398 (609)
.+.+.++.|.. ....++|++++ .|++++. ++.|.++|+.+++.+..+.-.. .....+++++..|+.+ -.++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSE
T ss_pred ceEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCE
Confidence 34555666553 46899999986 5555542 5799999999999988875322 2334577766555544 46789
Q ss_pred EEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-----ccEEEEE
Q psy4876 399 IVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-----AAVKAIA 473 (609)
Q Consensus 399 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~l~ 473 (609)
+.++|..+. ..+..+...... ...+++||+.++++..++.|.++|..+. +.+..+.... ..+..+.
T Consensus 88 v~viD~~t~-~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~------~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 88 GFIYDRRTL-SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTF------KLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp EEEEETTTT-EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEE
T ss_pred EEEEECCCC-cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCC------cEEEEEEECCCCcccccceeEE
Confidence 999999987 456666422122 2345668887777777899999999887 4444443221 2367888
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
|. ++ .+++.. ..++.|.+.|..+++.+..+... .....|+|+++++.++++. ...+.|.+.
T Consensus 159 ~~-dg-~lyvn~--~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTg-k~~~~v~~i 233 (266)
T 2iwa_A 159 YI-NG-EVWANI--WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTG-KLWPKLFEI 233 (266)
T ss_dssp EE-TT-EEEEEE--TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEE-TTCSEEEEE
T ss_pred EE-CC-EEEEec--CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEEC-CCCCeEEEE
Confidence 88 55 566665 36789999999999999988753 3568999999999888874 467888888
Q ss_pred ECCC
Q psy4876 540 KYPS 543 (609)
Q Consensus 540 d~~~ 543 (609)
++..
T Consensus 234 ~l~~ 237 (266)
T 2iwa_A 234 KLHL 237 (266)
T ss_dssp EEEE
T ss_pred EEec
Confidence 7643
No 236
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.89 E-value=1.8e-07 Score=96.48 Aligned_cols=190 Identities=13% Similarity=0.066 Sum_probs=123.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeC-----CCeEEEEeCCCCeeEEEecCC------CCceEEEEec--C-CEEEEEe---cC
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTS-----LGTVQLWDVSAKKKCRTMDGH------DVRVGALAWN--T-YILSSGS---RC 396 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~-----dg~I~iwd~~~~~~~~~l~~h------~~~V~~l~~~--~-~~L~sgs---~d 396 (609)
+-..+.+|+++++|+++++-.. ++.|.+||+.+++.+..+... ...+..++++ + ..+++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 4568999999999876665543 578999999999877766532 2356788885 3 3445544 67
Q ss_pred CeEEEEEcCCCCeeEEEEccCC-----------------------------CCeEEEEEccCCCEEEEEeCCC-cEEEEe
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHT-----------------------------QEVCGLKWSPDGRYLASGGNDN-LLNIWS 446 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~-----------------------------~~V~~l~~spdg~~lasgs~Dg-~I~iwd 446 (609)
+.|.+||+.++. ....+.+|. ..+.+|+|+|||+.|+++..++ .|+.++
T Consensus 145 ~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 145 AALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp CEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred CeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 899999998653 334333321 2368899999999888887765 555555
Q ss_pred CC---CCCCCCCccceE--eecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--CCCeEEEEEc
Q psy4876 447 GV---PGQHTFSTQPIH--SLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT--KSQVCALLWN 519 (609)
Q Consensus 447 ~~---~~~~~~~~~~~~--~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--~~~v~sl~~s 519 (609)
.. .+.. ...+... ...++......++++++| .++++. ..++.|.+||..+++....... ...+.+++|.
T Consensus 224 ~~~~~~~~~-~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~--~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~ 299 (343)
T 2qe8_A 224 SADLSNLQL-TDAELGSKIERYSEKPICDGISIDKDH-NIYVGD--LAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG 299 (343)
T ss_dssp HHHHTCTTC-CHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEE--GGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred HHHhcCCCC-ChhhhhcceEecccCCCCceEEECCCC-CEEEEc--cCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence 32 1100 0000000 111233345678999987 566665 3689999999866764433332 2468899999
Q ss_pred CCCCeEEEE
Q psy4876 520 SDYKELVSA 528 (609)
Q Consensus 520 ~~g~~l~~~ 528 (609)
+++.++++.
T Consensus 300 ~~g~l~v~~ 308 (343)
T 2qe8_A 300 SDGYLYFDC 308 (343)
T ss_dssp TTSCEEEEE
T ss_pred CCCcEEEEe
Confidence 998776664
No 237
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.87 E-value=1.7e-09 Score=113.28 Aligned_cols=254 Identities=14% Similarity=0.037 Sum_probs=133.5
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQL 361 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~i 361 (609)
+++++.|+.|+.||..+ ++..- ++.. +.+.+..+..++..+++++.||.|..
T Consensus 12 v~~gs~dg~v~a~d~~t-------------------------G~~~W--~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a 63 (369)
T 2hz6_A 12 LFVSTLDGSLHAVSKRT-------------------------GSIKW--TLKE-DPVLQVPTHVEEPAFLPDPNDGSLYT 63 (369)
T ss_dssp EEEEETTSEEEEEETTT-------------------------CCEEE--EEEC-CCSCCCC-----CCEEECTTTCCEEE
T ss_pred EEEEcCCCEEEEEECCC-------------------------CCEEE--EecC-CCceecceEcCCCEEEEeCCCCEEEE
Confidence 66788899999999988 55433 2222 44555556667878888889999999
Q ss_pred EeCCCCeeEEEecCCCCc-e-EEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC
Q psy4876 362 WDVSAKKKCRTMDGHDVR-V-GALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 362 wd~~~~~~~~~l~~h~~~-V-~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~ 438 (609)
||..+++.+..+..+... + .+... .+..+++++.++.|+.||..++. .+..+..+. ...++|++..+++++.
T Consensus 64 ~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~~~v~~~~~ 138 (369)
T 2hz6_A 64 LGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPSTSLLYLGRT 138 (369)
T ss_dssp C-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEE
T ss_pred EECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccCCEEEEEec
Confidence 999998877666543211 1 01112 45677888899999999999874 555554443 2345678889999999
Q ss_pred CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC---CcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCeEE
Q psy4876 439 DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS---PNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQVCA 515 (609)
Q Consensus 439 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~s 515 (609)
|+.|+.||.++++ .+..+..+. ....++.++. ..+++. +.|+.|+.||..+|+.+..+...+++..
T Consensus 139 dg~v~a~d~~tG~------~~W~~~~~~--~~~~~~~~~~~~~~~v~~~---~~dg~v~a~d~~tG~~~W~~~~~~pv~~ 207 (369)
T 2hz6_A 139 EYTITMYDTKTRE------LRWNATYFD--YAASLPEDDVDYKMSHFVS---NGDGLVVTVDSESGDVLWIQNYASPVVA 207 (369)
T ss_dssp EEEEECCCSSSSS------CCCEEEEEE--ECCBCCCCCTTCCCCEEEE---ETSCEEEEECTTTCCEEEEEECSSCEEE
T ss_pred CCEEEEEECCCCC------EEEeEeccc--ccCccccCCccccceEEEE---CCCCEEEEEECCCCcEEEEecCCCceEE
Confidence 9999999999884 333322111 1222333321 345543 3799999999999999988877766554
Q ss_pred -EEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEEeCCCCCEEEEEEeC--CCCEEEEEECCCCEEEEEcC
Q psy4876 516 -LLWNSDYKELVSAHGFAQNQLIIWKYPSLV----KVAELHGHSARVLNLAMSP--DETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 516 -l~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~----~~~~l~~h~~~V~~l~~sp--dg~~L~s~s~Dg~I~iWdl~ 584 (609)
..++.++...+......++.++.+|..+++ .+..+.. .+.+. +| .+..|+.++.||.|+.++..
T Consensus 208 ~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~ 278 (369)
T 2hz6_A 208 FYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM 278 (369)
T ss_dssp EEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred EEEecCCceEeccceeecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence 344455543211000013344555554444 2222211 01110 22 24467777888888877765
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.83 E-value=3.9e-08 Score=99.90 Aligned_cols=254 Identities=14% Similarity=0.091 Sum_probs=163.1
Q ss_pred ecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEeC
Q psy4876 277 WSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGTS 355 (609)
Q Consensus 277 wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs~ 355 (609)
...++ +.+++.++.|+.|| .+ +.......+ ....+.++...++|. |.+++.
T Consensus 27 ~d~~g~l~v~t~~~~l~~~d-~~-------------------------g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~ 78 (330)
T 3hxj_A 27 LAKNGTIYLGSSNKNLYAIN-TD-------------------------GSVKWFFKS-GEIIECRPSIGKDGT-IYFGSD 78 (330)
T ss_dssp ECTTSCEECSSTTTTTEEEC-TT-------------------------SCEEESSCG-GGEEEECCEETTTTE-ECCSSC
T ss_pred EccCCeEEEEcCCCEEEEEC-CC-------------------------CcEEEEEec-CCCcccceEEecCCc-EEEecC
Confidence 33344 55566688899999 66 443221111 334456777776665 445555
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
+ |..+|. +++.+..+.............+..|..++.++.|..+|.. +. .......+...+.++...++|. +..
T Consensus 79 ~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~-l~v 152 (330)
T 3hxj_A 79 K--VYAINP-DGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGT-IYV 152 (330)
T ss_dssp E--EEEECC-CGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSC-EEE
T ss_pred c--EEEECC-CCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCE-EEE
Confidence 4 888886 5554433332222223333347778888889999999988 43 4555555555667777877776 556
Q ss_pred EeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-CCeE
Q psy4876 436 GGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-SQVC 514 (609)
Q Consensus 436 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-~~v~ 514 (609)
++.++.|..||.. + ..+..+......+.++...+++ .+++ + + +.|..|| .+++.+..+... ..+.
T Consensus 153 gt~~~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~d~~g-~l~v-~--t--~~l~~~d-~~g~~~~~~~~~~~~~~ 218 (330)
T 3hxj_A 153 GSNDNYLYAINPD-G------TEKWRFKTNDAITSAASIGKDG-TIYF-G--S--DKVYAIN-PDGTEKWNFYAGYWTVT 218 (330)
T ss_dssp ECTTSEEEEECTT-S------CEEEEEECSSCCCSCCEECTTC-CEEE-E--S--SSEEEEC-TTSCEEEEECCSSCCCS
T ss_pred EcCCCEEEEECCC-C------CEeEEEecCCCceeeeEEcCCC-EEEE-E--e--CEEEEEC-CCCcEEEEEccCCccee
Confidence 7778999999988 6 4444444445556677777766 3444 2 3 8899999 777777666544 4677
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 515 ALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 515 sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
++...++|...+. ..++.|..++ .++..+..+......+..+.+.+++ .|..++.+|.|..+|.
T Consensus 219 ~~~~~~~g~l~v~---t~~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 219 RPAISEDGTIYVT---SLDGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp CCEECTTSCEEEE---ETTTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT
T ss_pred ceEECCCCeEEEE---cCCCeEEEEC-CCCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC
Confidence 8888888765553 2578888887 5666666665554445556666566 4667778888988885
No 239
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.83 E-value=5.5e-07 Score=97.99 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=155.2
Q ss_pred cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEE-c-cCCCEEEEEe----------
Q psy4876 287 LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAW-I-QEGYMLGVGT---------- 354 (609)
Q Consensus 287 ~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~-s-pdg~~Lasgs---------- 354 (609)
.++.|.+.|+.+ .++..+.++.....+..+++ + |++.++++++
T Consensus 110 ~~~rVavIdl~t-------------------------~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg 164 (595)
T 1fwx_A 110 ANTRVARVRCDV-------------------------MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG 164 (595)
T ss_dssp TTTEEEEEETTT-------------------------TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred CCCEEEEEECCC-------------------------ceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence 356799999988 66666667765566889998 5 9999999885
Q ss_pred --------CCCeEEEEeCCCCeeEEEecC-CCCceEEEEecCCEEEEEecCC----------------------------
Q psy4876 355 --------SLGTVQLWDVSAKKKCRTMDG-HDVRVGALAWNTYILSSGSRCG---------------------------- 397 (609)
Q Consensus 355 --------~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~~~~~L~sgs~dg---------------------------- 397 (609)
.++.|.++|.++.+.+.++.- ....-..+..++.++++.+.+.
T Consensus 165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~ 244 (595)
T 1fwx_A 165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA 244 (595)
T ss_dssp SSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred cccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe
Confidence 245799999999888877663 2222223333677777666442
Q ss_pred ----------eEEEEEcCC--CCeeEEEEccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCC------CCCCccc
Q psy4876 398 ----------NIVHHDVRS--RDHKVALLQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQ------HTFSTQP 458 (609)
Q Consensus 398 ----------~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~------~~~~~~~ 458 (609)
.|.+.|..+ +...+..+.. .....++.++|||+++++++ .+.+|.++|+.+.. .......
T Consensus 245 v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 245 IAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred ccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 366777765 3211333322 23456799999999877765 57899999998541 0000112
Q ss_pred eEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC----------CceeEEEcCCCCeEEE------EEcCCC
Q psy4876 459 IHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS----------GACLDSIDTKSQVCAL------LWNSDY 522 (609)
Q Consensus 459 ~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t----------~~~~~~~~~~~~v~sl------~~s~~g 522 (609)
+..+.. ......++|+|+| +++++. ..|+.|.+||+.+ .+.+..+..+.+.-.. .+++||
T Consensus 324 ~~~v~v-G~gP~h~aF~~dG-~aY~t~--~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 324 VAEPEL-GLGPLHTAFDGRG-NAYTSL--FLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp EECCBC-CSCEEEEEECTTS-EEEEEE--TTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS
T ss_pred EEEcCC-CCCcceEEECCCC-eEEEEE--ecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC
Confidence 233332 2356889999999 777776 3899999999987 5678888877665333 347999
Q ss_pred CeEEEEEecCCCeE-----------EEEECCCC
Q psy4876 523 KELVSAHGFAQNQL-----------IIWKYPSL 544 (609)
Q Consensus 523 ~~l~~~sG~~dg~I-----------~Iwd~~~~ 544 (609)
++|+++..+....+ .++|+..+
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 99999987774444 88998543
No 240
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.82 E-value=1.8e-06 Score=88.01 Aligned_cols=236 Identities=9% Similarity=-0.057 Sum_probs=151.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC--------------------CCCceEEEEec--CCEEEEE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG--------------------HDVRVGALAWN--TYILSSG 393 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~~--~~~L~sg 393 (609)
....+++|.++|++++++..++.|..||..+++.. .+.. ....+..++++ ...|+.+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~ 97 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV 97 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE
Confidence 34667899999998888989999999998765432 2210 01356788886 4567777
Q ss_pred ecCCeEEEEEcCCCCeeEEEEcc-----CCCCeEEEEEcc-CCCEEEEEeC-----------------CCcEEEEeCCCC
Q psy4876 394 SRCGNIVHHDVRSRDHKVALLQN-----HTQEVCGLKWSP-DGRYLASGGN-----------------DNLLNIWSGVPG 450 (609)
Q Consensus 394 s~dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~sp-dg~~lasgs~-----------------Dg~I~iwd~~~~ 450 (609)
...+.|..+|..++. +..+.. .......+++.+ +|++.++-.. ++.|..||..++
T Consensus 98 d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred ECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 666668888876532 222211 113478899999 9987666432 367888988765
Q ss_pred CCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc--eeEEE-cCCCCeEEEEEcCCCCeEEE
Q psy4876 451 QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA--CLDSI-DTKSQVCALLWNSDYKELVS 527 (609)
Q Consensus 451 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~--~~~~~-~~~~~v~sl~~s~~g~~l~~ 527 (609)
+. ..+.........|+|+|++..++++. +..+.|.+|++.... ....+ .... ...+++.++|++.++
T Consensus 176 ------~~-~~~~~~~~~p~gia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 176 ------ET-TLLLKELHVPGGAEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ------EE-EEEEEEESCCCEEEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEE
T ss_pred ------EE-EEeccCCccCcceEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEE
Confidence 21 11111122346799999987677765 356899999987421 11111 2223 788999999986666
Q ss_pred EEe--------cCCCeEEEEECCCCceEEEEeCCC----CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 528 AHG--------FAQNQLIIWKYPSLVKVAELHGHS----ARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 528 ~sG--------~~dg~I~Iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
..+ ...+.|..+|. .++.+..+.... ..+..+++ .++.++++....+.|.++++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 433 11467888886 577777765432 35677776 36666666667788999987643
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.79 E-value=1.6e-06 Score=85.71 Aligned_cols=194 Identities=9% Similarity=0.036 Sum_probs=134.4
Q ss_pred eEEEEEecCCCeEEEEc----CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccC
Q psy4876 271 YLNLIDWSHFNVLAVAL----GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~----dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spd 346 (609)
+...|.|++++.|-++. ++.|++.|..+ ++......+........+++.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-------------------------g~v~~~i~l~~~~fgeGi~~~-- 74 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQT-------------------------GKVENIHKMDDSYFGEGLTLL-- 74 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTT-------------------------CCEEEEEECCTTCCEEEEEEE--
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCC-------------------------CCEEEEEecCCCcceEEEEEe--
Confidence 45779999977444332 47999999998 665554444322223345554
Q ss_pred CCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---CC
Q psy4876 347 GYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---QE 420 (609)
Q Consensus 347 g~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~ 420 (609)
+..|+++. .++.|.++|..+.+.+.++......-..+++++..|+++..++.|.++|..+.. .+..+.- +. ..
T Consensus 75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~-v~~~I~Vg~~~~p~~~ 153 (266)
T 2iwa_A 75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFK-LIKKHNVKYNGHRVIR 153 (266)
T ss_dssp TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCC
T ss_pred CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCc-EEEEEEECCCCccccc
Confidence 55555544 578999999999999998864312335588888777777778999999998864 4444432 11 24
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC-------------cccEEEEEEcCCCCcEEEEEec
Q psy4876 421 VCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH-------------QAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------------~~~V~~l~~sp~~~~llasggG 487 (609)
+..+.|. +|..++....++.|.+.|..++ +.+..+... ......|+|+|+++.+++++.
T Consensus 154 ~nele~~-dg~lyvn~~~~~~V~vID~~tg------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk- 225 (266)
T 2iwa_A 154 LNELEYI-NGEVWANIWQTDCIARISAKDG------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK- 225 (266)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTTC------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-
T ss_pred ceeEEEE-CCEEEEecCCCCeEEEEECCCC------cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-
Confidence 6788888 7766666556889999999998 445544321 135689999999999999884
Q ss_pred cCCCeEEEEECCCC
Q psy4876 488 TADRHIYFWNVSSG 501 (609)
Q Consensus 488 s~Dg~I~iwd~~t~ 501 (609)
....|.+.++...
T Consensus 226 -~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 226 -LWPKLFEIKLHLV 238 (266)
T ss_dssp -TCSEEEEEEEEEC
T ss_pred -CCCeEEEEEEecc
Confidence 6788888887643
No 242
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.79 E-value=2.4e-06 Score=94.48 Aligned_cols=237 Identities=10% Similarity=-0.004 Sum_probs=151.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCC----CceE-EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEc
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD----VRVG-ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~-~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~ 415 (609)
+..|++++.|+.|..+|..+|+.+-...... ..+. .....+..+++++. +|.|..+|..+++ .+..+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGE-LKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCc-EEEEEc
Confidence 5678889999999999999999887655322 0111 11123455666654 7999999999985 454443
Q ss_pred cCCCC--------------------------------------eEEEEEccCCCEEEEEeCC----------------Cc
Q psy4876 416 NHTQE--------------------------------------VCGLKWSPDGRYLASGGND----------------NL 441 (609)
Q Consensus 416 ~h~~~--------------------------------------V~~l~~spdg~~lasgs~D----------------g~ 441 (609)
..... ...+++.++...++.++.+ +.
T Consensus 194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~ 273 (571)
T 2ad6_A 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence 22110 0235667766677666532 25
Q ss_pred EEEEeCCCCCCCCCccceEeecC--C--------cccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSR--H--------QAAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~--h--------~~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
|..+|..++ +.+..++. | ..++. +....+|. .+++.+ +.+|.++++|..+|+.+..+..
T Consensus 274 v~Ald~~tG------~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 274 IWGRDLDTG------MAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHI--DRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEEETTTC------CEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEE--CTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCC------cEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEe--CCCcEEEEEECCCCCEEeeecc
Confidence 999999998 34443321 1 12221 22223553 355555 4799999999999998877653
Q ss_pred CC--------------Ce--------------------------EEEEEcCCCCeEEEEEe-------------------
Q psy4876 510 KS--------------QV--------------------------CALLWNSDYKELVSAHG------------------- 530 (609)
Q Consensus 510 ~~--------------~v--------------------------~sl~~s~~g~~l~~~sG------------------- 530 (609)
.. ++ ..++++|+...+++.+.
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 22 11 24578888887776532
Q ss_pred ----------------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhhh
Q psy4876 531 ----------------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 531 ----------------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~~ 594 (609)
..++.|..||..+++.+..+... ..+....+...+..|+.++.|+.|+.||..+++..-+...
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 13578999999999988777532 2233333334567788899999999999999887655443
No 243
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.78 E-value=9.1e-06 Score=80.20 Aligned_cols=231 Identities=7% Similarity=-0.013 Sum_probs=144.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCee-----EEEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKK-----CRTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~-----~~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
.+|+.+.. +.|+.+++..... ...+......+..++|+ +. ++++-..++.|..++..... ....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCCC
Confidence 45555554 5788888875432 11222223456788885 34 44455567899999997653 2333333335
Q ss_pred CeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC
Q psy4876 420 EVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 420 ~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~ 498 (609)
...++++++++..|+.+ ...+.|.++++... ...............++++|++..++++..+...+.|..+++
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~ 153 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCC------CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence 68899999976555544 45678999998743 111112222245689999998777777753222478999988
Q ss_pred CCCceeEEEc--CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEE-CC
Q psy4876 499 SSGACLDSID--TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAG-AD 575 (609)
Q Consensus 499 ~t~~~~~~~~--~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s-~D 575 (609)
... ....+. .......+++++++..|+++. ...+.|.+++.........+.+ ......++.. +..|+.+. ..
T Consensus 154 dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d-~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~ 228 (267)
T 1npe_A 154 DGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVD-AGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKT 228 (267)
T ss_dssp TSC-CCEEEECTTCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTT
T ss_pred CCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEE-CCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCC
Confidence 643 333332 234688999999988887764 3678999999875544333333 2334667664 45555555 56
Q ss_pred CCEEEEEcCCCccchh
Q psy4876 576 ETLRLWKIFEKVKSKK 591 (609)
Q Consensus 576 g~I~iWdl~~~~~~~k 591 (609)
+.|.++|..++.....
T Consensus 229 ~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 229 NSVIAMDLAISKEMDT 244 (267)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CeEEEEeCCCCCceEE
Confidence 8899999887765433
No 244
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.77 E-value=1.1e-05 Score=81.45 Aligned_cols=241 Identities=11% Similarity=0.064 Sum_probs=145.1
Q ss_pred eeeeeeecCCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC-C-eEEE
Q psy4876 326 IDHLMDLEGNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC-G-NIVH 401 (609)
Q Consensus 326 ~~~l~~~~h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d-g-~I~i 401 (609)
.+.+.++........++|+++|+++++-..++.|..||.... ....+. .......+++ +++++++.... + .|..
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 445555554467889999999987776667899999998753 333333 2356788888 46655554332 2 4777
Q ss_pred EEcCCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC--ccceE--eecCCcccEEEEEEcC
Q psy4876 402 HDVRSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS--TQPIH--SLSRHQAAVKAIAWCP 476 (609)
Q Consensus 402 wd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~--~~~~~--~~~~h~~~V~~l~~sp 476 (609)
+|..++. ...... ........++..+++..+++-..++.|+++|...+..... ...+. ...........| ++
T Consensus 100 ~d~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 100 LVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EcCCCCe-EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 7766653 221111 2223345666666655455544588999999865310000 00000 001111234555 78
Q ss_pred CCCcEEEEEeccCCCeEEEEECCC-Cce--eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EEe
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSS-GAC--LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA--ELH 551 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t-~~~--~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~--~l~ 551 (609)
++..++++. +..+.|..||+.. +.. ...+........++++++|+.+++ ....+.|.+++.. ++... .+.
T Consensus 177 dg~~lyv~d--~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 177 FGNFLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp ETTEEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGG
T ss_pred CCCEEEEEe--CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecc
Confidence 887777776 4688999999874 332 122222235677899999976555 3457889999964 55432 233
Q ss_pred CCCCCEEEEEEe---CCCCEEEEEECCC
Q psy4876 552 GHSARVLNLAMS---PDETTVLSAGADE 576 (609)
Q Consensus 552 ~h~~~V~~l~~s---pdg~~L~s~s~Dg 576 (609)
......++++|. ||+..|+.++..+
T Consensus 252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred cccCCceEEEEecccCCCCEEEEECCCC
Confidence 333568999998 8988887776543
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.74 E-value=1.6e-06 Score=91.24 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=126.2
Q ss_pred CeEEEEEccCCCEEEEEeCC------CeEEEEeCCCCeeEEEecCCCCc---eEEEEe--cCCEEEEEe-----------
Q psy4876 337 NVCSVAWIQEGYMLGVGTSL------GTVQLWDVSAKKKCRTMDGHDVR---VGALAW--NTYILSSGS----------- 394 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~d------g~I~iwd~~~~~~~~~l~~h~~~---V~~l~~--~~~~L~sgs----------- 394 (609)
.-..+...|+| .++++..+ |.|.++|..+++.+..+...... -..+.| +++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 44567888999 66665554 78999999999999988733222 234555 567777774
Q ss_pred --------cCCeEEEEEcCCCCeeEEEEccC--CCCeEEEEE--ccCCCEEEEEe------CCCcEEEEeCCCCCCCCCc
Q psy4876 395 --------RCGNIVHHDVRSRDHKVALLQNH--TQEVCGLKW--SPDGRYLASGG------NDNLLNIWSGVPGQHTFST 456 (609)
Q Consensus 395 --------~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~--spdg~~lasgs------~Dg~I~iwd~~~~~~~~~~ 456 (609)
.+.+|.+||+.++ ..+.++... ......|.| +|+++++++++ .++.|.+|..+.+..
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~---- 292 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKW---- 292 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEE----
T ss_pred chhhhhhccCCEEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCce----
Confidence 3689999999986 456666542 134456656 99999887776 456887766554310
Q ss_pred cceEee--cC----------------CcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC---CceeEEEcCCC----
Q psy4876 457 QPIHSL--SR----------------HQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS---GACLDSIDTKS---- 511 (609)
Q Consensus 457 ~~~~~~--~~----------------h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t---~~~~~~~~~~~---- 511 (609)
.....+ .. -......|.+++||+.|+++.- ..+.|.+||+.. .+.+..+...+
T Consensus 293 ~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~ 370 (462)
T 2ece_A 293 NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHR 370 (462)
T ss_dssp EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence 111110 00 0234678999999998888874 578999999863 35566665542
Q ss_pred -----------CeEEEEEcCCCCeEEEEE
Q psy4876 512 -----------QVCALLWNSDYKELVSAH 529 (609)
Q Consensus 512 -----------~v~sl~~s~~g~~l~~~s 529 (609)
....+.++++|++|+++.
T Consensus 371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 368899999999999975
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=4.8e-06 Score=93.90 Aligned_cols=237 Identities=11% Similarity=0.045 Sum_probs=154.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCC----CceE-EEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEc
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHD----VRVG-ALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~-~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~ 415 (609)
+..|++++.|+.|..+|..+|+.+-.+.... ..+. .....+..++++.. +|.|..+|..++. .+..+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~-~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK-LAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC-EEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc-EEEEec
Confidence 5678889999999999999999887765421 1111 11123445555543 5899999999985 555443
Q ss_pred cC-------------------------------CCCeEEEEEccCCCEEEEEeCCC-------------------cEEEE
Q psy4876 416 NH-------------------------------TQEVCGLKWSPDGRYLASGGNDN-------------------LLNIW 445 (609)
Q Consensus 416 ~h-------------------------------~~~V~~l~~spdg~~lasgs~Dg-------------------~I~iw 445 (609)
.. ......+++.+++.+++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 21 01112468888888888887765 39999
Q ss_pred eCCCCCCCCCccceEeecC--Cc-------ccEEEEEEcCCCC--cEEEEEeccCCCeEEEEECCCCceeEEEcCCC---
Q psy4876 446 SGVPGQHTFSTQPIHSLSR--HQ-------AAVKAIAWCPWSP--NVLASGGGTADRHIYFWNVSSGACLDSIDTKS--- 511 (609)
Q Consensus 446 d~~~~~~~~~~~~~~~~~~--h~-------~~V~~l~~sp~~~--~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~--- 511 (609)
|..++ +.+..+.. |. .+.....+..++. .+++.+ +.+|.++++|..+|+.+..+....
T Consensus 276 D~~tG------~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w 347 (668)
T 1kv9_A 276 RPDTG------KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVTW 347 (668)
T ss_dssp CTTTC------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCCS
T ss_pred cCCCC------ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE--CCCCEEEEEECCCCCEecccccccccc
Confidence 99999 44444432 21 2222222223443 245554 589999999999999884432211
Q ss_pred ----------C------------------------eEEEEEcCCCCeEEEEEe---------------------------
Q psy4876 512 ----------Q------------------------VCALLWNSDYKELVSAHG--------------------------- 530 (609)
Q Consensus 512 ----------~------------------------v~sl~~s~~g~~l~~~sG--------------------------- 530 (609)
+ -..++++|+...+++...
T Consensus 348 ~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 427 (668)
T 1kv9_A 348 AEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFAD 427 (668)
T ss_dssp EEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGG
T ss_pred ccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccc
Confidence 0 112677887777665221
Q ss_pred -------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCccchhhh
Q psy4876 531 -------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVKSKKKE 593 (609)
Q Consensus 531 -------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~~~k~~ 593 (609)
..+|.|..||..+++.+.....+. .+....+...+.+|+.++.|+.|++||..+++...+..
T Consensus 428 ~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 428 ATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp CCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 123889999999999887775432 33334455578899999999999999999888765443
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.71 E-value=5.3e-06 Score=91.95 Aligned_cols=242 Identities=11% Similarity=0.014 Sum_probs=150.2
Q ss_pred EEEccCCCE----EEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE-EEEecCCEEEEEe------cCCeEEEEEcC
Q psy4876 341 VAWIQEGYM----LGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG-ALAWNTYILSSGS------RCGNIVHHDVR 405 (609)
Q Consensus 341 v~~spdg~~----Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~l~~~~~~L~sgs------~dg~I~iwd~~ 405 (609)
++++|.+.. |++++.|+.|..+|..+|+.+-....... .+. .....+..+++++ .+|.|+.+|..
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETT
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECC
Confidence 455444444 88899999999999999998876543220 111 1112234555555 37999999999
Q ss_pred CCCeeEEEEccCCCC-------------------------------------e-EEEEEccCCCEEEEEeCC--------
Q psy4876 406 SRDHKVALLQNHTQE-------------------------------------V-CGLKWSPDGRYLASGGND-------- 439 (609)
Q Consensus 406 ~~~~~~~~~~~h~~~-------------------------------------V-~~l~~spdg~~lasgs~D-------- 439 (609)
+++ .+..+...... + ..+++.++..+++.++.+
T Consensus 191 TG~-~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 191 TGE-QVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TCC-EEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCc-EEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 985 44444322111 0 134566777777777654
Q ss_pred --------CcEEEEeCCCCCCCCCccceEeecC--Cc--------ccEEEEEEc-CCCC--cEEEEEeccCCCeEEEEEC
Q psy4876 440 --------NLLNIWSGVPGQHTFSTQPIHSLSR--HQ--------AAVKAIAWC-PWSP--NVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 440 --------g~I~iwd~~~~~~~~~~~~~~~~~~--h~--------~~V~~l~~s-p~~~--~llasggGs~Dg~I~iwd~ 498 (609)
+.|..+|.++++ .+..++. |. .++. +... .+|. .+++.+ +.+|.++++|.
T Consensus 270 r~gd~~y~~sv~Ald~~TG~------~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~--~~~G~l~~lD~ 340 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGE------AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHP--DRNGIVYTLDR 340 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCC------EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE--CTTSEEEEEET
T ss_pred cCCCccccceEEEEeCCCCc------eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEE--CCCcEEEEEEC
Confidence 379999999984 4433332 21 1221 2221 3453 345544 58999999999
Q ss_pred CCCceeEEEcCCC--------------C--------------------------eEEEEEcCCCCeEEEEEe--------
Q psy4876 499 SSGACLDSIDTKS--------------Q--------------------------VCALLWNSDYKELVSAHG-------- 530 (609)
Q Consensus 499 ~t~~~~~~~~~~~--------------~--------------------------v~sl~~s~~g~~l~~~sG-------- 530 (609)
.+|+.+....... + -..++++|+...+++...
T Consensus 341 ~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (599)
T 1w6s_A 341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP 420 (599)
T ss_dssp TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred CCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeec
Confidence 9999887654221 0 124567777666655310
Q ss_pred -----------------------c------CCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEE
Q psy4876 531 -----------------------F------AQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLW 581 (609)
Q Consensus 531 -----------------------~------~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iW 581 (609)
. ..|.|.-||..+++.+...... .++..-.+.-.+.+|+.++.|+.|+.|
T Consensus 421 ~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~ 499 (599)
T 1w6s_A 421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKAR 499 (599)
T ss_dssp CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred ccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEE
Confidence 1 3478999999999888776421 122211223357788889999999999
Q ss_pred EcCCCccchhhh
Q psy4876 582 KIFEKVKSKKKE 593 (609)
Q Consensus 582 dl~~~~~~~k~~ 593 (609)
|..+++..-+.+
T Consensus 500 D~~tG~~lW~~~ 511 (599)
T 1w6s_A 500 DSDTGDLLWKFK 511 (599)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEee
Confidence 999988765443
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.70 E-value=6e-05 Score=86.65 Aligned_cols=271 Identities=11% Similarity=0.050 Sum_probs=173.7
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
|.++...+++ +.+++.++.|+.|+..+ +.............|.++...++|.+.
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~-------------------------~~~~~~~~~~~~~~i~~i~~d~~g~lw 229 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQ-------------------------KTFEKVIPILGTKQIQAILQQSPTRIW 229 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTT-------------------------CCEEECC----CCCEEEEEEEETTEEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCC-------------------------CeEEEecCCCCCCeeEEEEEcCCCCEE
Confidence 5667776665 55566666799999876 444333211235678888888877655
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEecC-------CCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEcc------
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMDG-------HDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQN------ 416 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~------ 416 (609)
+ |+.++-|.+||..+++....... ....|.++..+ ...|..|+.+ -|.+||..+.. ...+..
T Consensus 230 i-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~ 305 (795)
T 4a2l_A 230 V-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENG 305 (795)
T ss_dssp E-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTT
T ss_pred E-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCC
Confidence 4 55444489999887665443222 13568898885 4456666665 58889987652 333321
Q ss_pred --CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-------CCcccEEEEEEcCCCCcEEEEEec
Q psy4876 417 --HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-------RHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 417 --h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~sp~~~~llasggG 487 (609)
....|.++...++|.+ -.|+.++-|.+|+..... ...+. -....|.++...++|. +.+ |
T Consensus 306 ~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~-------~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWi-G-- 373 (795)
T 4a2l_A 306 SLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNR-------FKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWI-G-- 373 (795)
T ss_dssp SCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGS-------SEEECCCTTSSSCSCSSEEEEEECTTSC-EEE-E--
T ss_pred CCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCccc-------ceEEcCCCCCCCCCCCeeEEEEECCCCC-EEE-E--
Confidence 2357999999998874 456676778899876441 11111 1245699999888774 444 2
Q ss_pred cCCCeEEEEECCCCceeEEEc---------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe----CCC
Q psy4876 488 TADRHIYFWNVSSGACLDSID---------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH----GHS 554 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~---------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~----~h~ 554 (609)
+.++-|..||..++....... ....|.+++..+++..|.+ |..++.|.+||..+++...... .+.
T Consensus 374 t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 374 TNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp ESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred ECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 367789999988776543321 1246889999888884444 3356789999988765433211 134
Q ss_pred CCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 555 ARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..|.++...++|.+.+.. . +-|.+|+..++.
T Consensus 452 ~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~ 482 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLGT-L-SALVRFNPEQRS 482 (795)
T ss_dssp SCEEEEEECSSSCEEEEE-S-SCEEEEETTTTE
T ss_pred CeeEEEEECCCCCEEEEe-c-CceeEEeCCCCe
Confidence 679999998888855544 4 458888876543
No 249
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.67 E-value=0.0001 Score=76.15 Aligned_cols=249 Identities=9% Similarity=-0.052 Sum_probs=155.1
Q ss_pred EEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 274 LIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 274 ~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
|.+..++..|..+....|+..++.. .....+. .....+..++|++.+..|+..
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g-------------------------~~~~~~~--~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHR-------------------------SEYTLLL--NNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTS-------------------------CCEEEEE--CSCSCEEEEEEETTTTEEEEE
T ss_pred ccccccCceeEeecccceEEEeCCC-------------------------CeeEEee--cCCCceEEEEEeccccEEEEE
Confidence 4444555566667777888888766 4333332 233568899999876665554
Q ss_pred -eCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 354 -TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 354 -s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
...+.|..+++........+.........++++ +.++++-...+.|.+.++.... ....+...-....+|+++|.
T Consensus 91 D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~ 169 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPM 169 (349)
T ss_dssp ETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETT
T ss_pred eccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecC
Confidence 456889999988765444444333344555553 4555666667889999987653 23333334456789999996
Q ss_pred CCEEEEEe-CC-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 430 GRYLASGG-ND-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 430 g~~lasgs-~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+..|+... .. +.|..+++... ...............|+|+|++..|+++- +..+.|..+|+........+
T Consensus 170 ~g~ly~td~~~~~~I~r~~~dG~------~~~~~~~~~~~~PnGla~d~~~~~lY~aD--~~~~~I~~~~~dG~~~~~~~ 241 (349)
T 3v64_C 170 EGTIYWTDWGNTPRIEASSMDGS------GRRIIADTHLFWPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVI 241 (349)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC------SCEESCCSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEE
T ss_pred cCeEEEeccCCCCEEEEEeCCCC------CcEEEEECCCCCcceEEEeCCCCEEEEEE--CCCCEEEEEeCCCCceEEEE
Confidence 65555444 34 78988888753 11111222344578999999887888776 36789999998754333333
Q ss_pred cC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 508 DT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 508 ~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
.. ......+++. ...++.+ ....+.|..++..+++.+..+........+|+
T Consensus 242 ~~~~~~P~giav~--~~~ly~t-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~ 293 (349)
T 3v64_C 242 SQGLPHPFAITVF--EDSLYWT-DWHTKSINSANKFTGKNQEIIRNKLHFPMDIH 293 (349)
T ss_dssp CSSCSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECSCSCCCCEE
T ss_pred eCCCCCceEEEEE--CCEEEEe-cCCCCeEEEEEccCCCccEEeccCCCCCceEE
Confidence 22 3466788883 3345444 44678899888777766655543333333443
No 250
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.65 E-value=8.3e-06 Score=79.85 Aligned_cols=188 Identities=12% Similarity=0.172 Sum_probs=129.7
Q ss_pred eeeeeecCCC--CeEEEEEccCCCEEEEEeCCC--eEEEEeCCCCeeEEEecCCCCce-EEEEecCCEEEEE-ecCCeEE
Q psy4876 327 DHLMDLEGNE--NVCSVAWIQEGYMLGVGTSLG--TVQLWDVSAKKKCRTMDGHDVRV-GALAWNTYILSSG-SRCGNIV 400 (609)
Q Consensus 327 ~~l~~~~h~~--~V~~v~~spdg~~Lasgs~dg--~I~iwd~~~~~~~~~l~~h~~~V-~~l~~~~~~L~sg-s~dg~I~ 400 (609)
+.+.++.|+. ....+.|+ ++.++.+.+.+| .|+++|+.+++.+..+....... ..++..++.|+.. ..++.+.
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEE
Confidence 3445556544 34889998 665555555555 89999999999988886543322 3466655555544 4688999
Q ss_pred EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC--c---ccEEEEEEc
Q psy4876 401 HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH--Q---AAVKAIAWC 475 (609)
Q Consensus 401 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~---~~V~~l~~s 475 (609)
+||..+.. .+..+.... . +..+++|+..|+.+..++.|.++|..+. +.+..+... . ..+..+.|.
T Consensus 111 v~D~~t~~-~~~ti~~~~-e--G~glt~dg~~L~~SdGs~~i~~iDp~T~------~v~~~I~V~~~g~~~~~lNELe~~ 180 (262)
T 3nol_A 111 VWNIRNLR-QVRSFNYDG-E--GWGLTHNDQYLIMSDGTPVLRFLDPESL------TPVRTITVTAHGEELPELNELEWV 180 (262)
T ss_dssp EEETTTCC-EEEEEECSS-C--CCCEEECSSCEEECCSSSEEEEECTTTC------SEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECccCc-EEEEEECCC-C--ceEEecCCCEEEEECCCCeEEEEcCCCC------eEEEEEEeccCCccccccceeEEE
Confidence 99999874 566665322 2 2233456777777666788999999987 444444331 1 334567776
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-------------CCeEEEEEcCCCCeEEEEE
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-------------~~v~sl~~s~~g~~l~~~s 529 (609)
+| .+++.. -.+..|.+.|..+|+.+..++.. .-...|+|+|+++.|++++
T Consensus 181 -~G-~lyan~--w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 181 -DG-EIFANV--WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp -TT-EEEEEE--TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred -CC-EEEEEE--ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 45 566654 36889999999999999888753 2468999999999888864
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=5e-06 Score=81.43 Aligned_cols=180 Identities=17% Similarity=0.142 Sum_probs=124.3
Q ss_pred ceeEEEEEecCCC--eEEEEcCC--eEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEc
Q psy4876 269 DYYLNLIDWSHFN--VLAVALGG--SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWI 344 (609)
Q Consensus 269 ~~~v~~l~wsp~~--lla~s~dg--~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~s 344 (609)
..+...|.|+ ++ +++.+.+| .|+++|+++ ++......+. .........
T Consensus 42 ~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-------------------------gkv~~~~~l~--~~~FgeGit 93 (262)
T 3nol_A 42 KAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-------------------------GKTLQQIELG--KRYFGEGIS 93 (262)
T ss_dssp TCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-------------------------CCEEEEEECC--TTCCEEEEE
T ss_pred CcccceEEEE-CCEEEEECCCCCCceEEEEECCC-------------------------CcEEEEEecC--CccceeEEE
Confidence 4567889998 55 33455555 899999998 6665544443 333333333
Q ss_pred cCCCEEEEEe-CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---
Q psy4876 345 QEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT--- 418 (609)
Q Consensus 345 pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~--- 418 (609)
++++.|+... .++.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|..+.. .+..+.- ..
T Consensus 94 ~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~-v~~~I~V~~~g~~~ 171 (262)
T 3nol_A 94 DWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLT-PVRTITVTAHGEEL 171 (262)
T ss_dssp EETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCS-EEEEEECEETTEEC
T ss_pred EeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCe-EEEEEEeccCCccc
Confidence 4565666554 47899999999999999987533 335677888777777778889999999874 4444332 12
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCC------------cccEEEEEEcCCCCcEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRH------------QAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------~~~V~~l~~sp~~~~llasg 485 (609)
..++.+.|. +|+.++..-.++.|.+.|..++ +.+..+... ..-...|+|+|+++.++++|
T Consensus 172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 172 PELNELEWV-DGEIFANVWQTNKIVRIDPETG------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCEEEEEEE-TTEEEEEETTSSEEEEECTTTC------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred cccceeEEE-CCEEEEEEccCCeEEEEECCCC------cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 335567886 7876666657889999999998 444333221 23468999999999999987
No 252
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.63 E-value=7e-05 Score=78.46 Aligned_cols=250 Identities=9% Similarity=-0.058 Sum_probs=157.5
Q ss_pred EEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 274 LIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 274 ~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
|.+..+...|..+....|+..++.. .....+.. ....+..++|.+.+..|+..
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~-------------------------~~~~~~~~--~~~~~~gl~~d~~~~~ly~~ 133 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHR-------------------------SEYTLLLN--NLENAIALDFHHRRELVFWS 133 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTS-------------------------CCCEEEEC--SCSCEEEEEEETTTTEEEEE
T ss_pred ECCccccceeEeecCccceeeccCC-------------------------CcEEEEec--CCCccEEEEEecCCCeEEEE
Confidence 3344455566677778888888876 44433332 34568899999866555544
Q ss_pred -eCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC
Q psy4876 354 -TSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 354 -s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 429 (609)
...+.|..+++........+.........++++ +.++++-...+.|.+.++.... ....+...-....+|++.|.
T Consensus 134 D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~ 212 (386)
T 3v65_B 134 DVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPM 212 (386)
T ss_dssp ETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETT
T ss_pred eCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcC
Confidence 466889999988665444443333334445553 4555566667789998887543 23333334466889999997
Q ss_pred CCEEEEEeC-C-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE
Q psy4876 430 GRYLASGGN-D-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI 507 (609)
Q Consensus 430 g~~lasgs~-D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~ 507 (609)
+..|+.... . +.|..+++... ...............|+|+|++..|+++- +..+.|..+|+........+
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~------~~~~~~~~~~~~PnGlavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~ 284 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGS------GRRIIADTHLFWPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVI 284 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSC------SCEEEECSSCSCEEEEEEEGGGTEEEEEE--TTTTEEEEECTTSCSCEEEE
T ss_pred CCeEEEeccCCCCEEEEEeCCCC------CcEEEEECCCCCeeeEEEeCCCCEEEEEE--CCCCEEEEEeCCCCeeEEEE
Confidence 666655543 3 67888888754 22222223344578999999887888776 36789999998754333333
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 508 D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 508 ~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
. .......+++. +..++.+ ....+.|..++..+++.+..+........+|++
T Consensus 285 ~~~~~~P~giav~--~~~ly~t-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 285 SQGLPHPFAITVF--EDSLYWT-DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp CSSCSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred ECCCCCceEEEEE--CCEEEEe-eCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 3 23467788883 3344444 456888999997777776666544334444544
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.61 E-value=7.1e-06 Score=92.52 Aligned_cols=257 Identities=12% Similarity=0.099 Sum_probs=157.1
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC---CCCeEE-EEEccCCCEEEEEeC-
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG---NENVCS-VAWIQEGYMLGVGTS- 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h---~~~V~~-v~~spdg~~Lasgs~- 355 (609)
.++.++.|+.|+.+|..+ ++..-...... ...+.+ ..+ .+..++++..
T Consensus 119 ~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~ 171 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKT-------------------------GKAIWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGG 171 (668)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECSCTTSSCBCCSCCEE--ETTEEEECCBC
T ss_pred EEEEEcCCCEEEEEECCC-------------------------CCEeeeeccCCCCCcceecCCCEE--ECCEEEEeCCC
Confidence 466677799999999988 44332222210 011111 111 1345555543
Q ss_pred -----CCeEEEEeCCCCeeEEEecCC--C-C----------------------------ceEEEEec--CCEEEEEecCC
Q psy4876 356 -----LGTVQLWDVSAKKKCRTMDGH--D-V----------------------------RVGALAWN--TYILSSGSRCG 397 (609)
Q Consensus 356 -----dg~I~iwd~~~~~~~~~l~~h--~-~----------------------------~V~~l~~~--~~~L~sgs~dg 397 (609)
+|.|..+|..+|+.+-.+... . . ....++++ ..+++.+..++
T Consensus 172 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g 251 (668)
T 1kv9_A 172 AEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNG 251 (668)
T ss_dssp TTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCC
Confidence 589999999999988776521 0 0 01124553 47888887766
Q ss_pred -------------------eEEEEEcCCCCeeEEEEcc--CC-------CCeEEEEEccCCC---EEEEEeCCCcEEEEe
Q psy4876 398 -------------------NIVHHDVRSRDHKVALLQN--HT-------QEVCGLKWSPDGR---YLASGGNDNLLNIWS 446 (609)
Q Consensus 398 -------------------~I~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~spdg~---~lasgs~Dg~I~iwd 446 (609)
.|..+|..++. .+..++. |. .++....+..+|+ .++.++.+|.++++|
T Consensus 252 ~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD 330 (668)
T 1kv9_A 252 SPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLD 330 (668)
T ss_dssp ESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEE
T ss_pred CccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEE
Confidence 39999999985 5555543 22 2333333334675 688999999999999
Q ss_pred CCCCCCCCCccceEeecCCc------------ccE------------------------EEEEEcCCCCcEEEEE-----
Q psy4876 447 GVPGQHTFSTQPIHSLSRHQ------------AAV------------------------KAIAWCPWSPNVLASG----- 485 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~h~------------~~V------------------------~~l~~sp~~~~llasg----- 485 (609)
..+++. +....... .++ ..++++|+...+++..
T Consensus 331 ~~tG~~------l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~ 404 (668)
T 1kv9_A 331 RTNGKL------ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPG 404 (668)
T ss_dssp TTTCCE------EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCE
T ss_pred CCCCCE------eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccce
Confidence 999843 21111000 000 1256777655444311
Q ss_pred ----------------------------eccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEE
Q psy4876 486 ----------------------------GGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 486 ----------------------------gGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~ 537 (609)
....++.|..||+.+|+.+-.+..........+...+..+++ |..++.|+
T Consensus 405 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~ 482 (668)
T 1kv9_A 405 VYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMH 482 (668)
T ss_dssp EECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEE
T ss_pred EeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccch
Confidence 011348899999999999888776655555555667788887 45899999
Q ss_pred EEECCCCceEEEEeCCCCCE-EEEEEeCCCC-EEEEEE
Q psy4876 538 IWKYPSLVKVAELHGHSARV-LNLAMSPDET-TVLSAG 573 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~-~L~s~s 573 (609)
.||..+++.+..+....... .-+.+..+|+ +++.++
T Consensus 483 a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 483 AYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred hhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 99999999998886543211 2234455776 444444
No 254
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.60 E-value=0.00012 Score=84.02 Aligned_cols=270 Identities=11% Similarity=0.076 Sum_probs=176.6
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-----c-CCCCeEEEEE
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-----E-GNENVCSVAW 343 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-h~~~V~~v~~ 343 (609)
..|.+|...+++.+-++.++.|.+||..+ +....+... . ....|.++..
T Consensus 263 ~~i~~i~~d~~g~lWigt~~Gl~~~~~~~-------------------------~~~~~~~~~~~~~~~l~~~~i~~i~~ 317 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFNDLNIYHEGT-------------------------DSFASYSSNPVENGSLSQRSVRSIFM 317 (795)
T ss_dssp SBEEEEEECTTSCEEEEESSCEEEEETTT-------------------------TEEEEECCCTTSTTSCSSSCEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEeCChhheEcCCC-------------------------CeEEEEecCCCCCCCCCCCcEEEEEE
Confidence 45888888887644333344799999876 333332211 1 3467999999
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEec------CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEc-
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD------GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQ- 415 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~------~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~- 415 (609)
.++|.+. +|+.++-|.+|+..++....... -....|.++..+ ...|..|+.++-|..||..+.. ...+.
T Consensus 318 D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~--~~~~~~ 394 (795)
T 4a2l_A 318 DSQGGMW-LGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR--FTSYTL 394 (795)
T ss_dssp CTTSCEE-EEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC--EEEECC
T ss_pred eCCcCEE-EEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc--EEEEec
Confidence 9888755 57777779999876554322211 124568888885 3467778888889999987653 22221
Q ss_pred --------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-----CCcccEEEEEEcCCCCcEE
Q psy4876 416 --------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-----RHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 416 --------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~l~~sp~~~~ll 482 (609)
.....|.++...++|+.|..|+.++-|.+||..++. ...+. .....|.++...+++. +.
T Consensus 395 ~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-------~~~~~~~~~~l~~~~v~~i~~d~~g~-lw 466 (795)
T 4a2l_A 395 QEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-------VENFNQRNSQLVNENVYAILPDGEGN-LW 466 (795)
T ss_dssp C------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC-------EEEECTTTSCCSCSCEEEEEECSSSC-EE
T ss_pred CCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-------EEEeecCCCCcCCCeeEEEEECCCCC-EE
Confidence 123579999998899856667777779999988762 22221 2345789999888774 44
Q ss_pred EEEeccCCCeEEEEECCCCceeEEEcC-------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe----
Q psy4876 483 ASGGGTADRHIYFWNVSSGACLDSIDT-------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---- 551 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~~~~~~~~-------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---- 551 (609)
+.. . +-|.+||..+++....... ...|.++...++|...+.. . +.|..||..+... .+.
T Consensus 467 igt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~-~Gl~~~~~~~~~~--~~~~~~~ 536 (795)
T 4a2l_A 467 LGT---L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG---E-EGLSVFKQEGLDI--QKASILP 536 (795)
T ss_dssp EEE---S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE---S-SCEEEEEEETTEE--EECCCSC
T ss_pred EEe---c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe---C-CceEEEeCCCCeE--EEecCCC
Confidence 432 3 5588999887754432211 2468899999888866642 3 5688898776654 332
Q ss_pred ---CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 552 ---GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 552 ---~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.....|.++...++|.+.++. .. -|..||..+..
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTE
T ss_pred CCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCc
Confidence 123578999999999855543 33 57788876543
No 255
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.59 E-value=2.5e-05 Score=86.42 Aligned_cols=237 Identities=12% Similarity=0.039 Sum_probs=148.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC----ceE-E-EEecC----C-EEEEEec------CCeEEEEEcCCCCe
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV----RVG-A-LAWNT----Y-ILSSGSR------CGNIVHHDVRSRDH 409 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~-~-l~~~~----~-~L~sgs~------dg~I~iwd~~~~~~ 409 (609)
+..|++++.|+.|..+|..+|+.+-....... .+. . +..++ . .+++++. +|.|..+|..+++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~- 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE- 195 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC-
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC-
Confidence 56788899999999999999998876653321 111 1 11223 2 5666553 7899999999875
Q ss_pred eEEEEccCCCC-----------------------------------------eEEEEEccCCCEEEEEeC----------
Q psy4876 410 KVALLQNHTQE-----------------------------------------VCGLKWSPDGRYLASGGN---------- 438 (609)
Q Consensus 410 ~~~~~~~h~~~-----------------------------------------V~~l~~spdg~~lasgs~---------- 438 (609)
.+......... -..+++.|+..+++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 44333221000 013466677677776663
Q ss_pred ----------C----CcEEEEeCCCCCCCCCccceEeec--CCc--------ccEEEEEEc-CCCC--cEEEEEeccCCC
Q psy4876 439 ----------D----NLLNIWSGVPGQHTFSTQPIHSLS--RHQ--------AAVKAIAWC-PWSP--NVLASGGGTADR 491 (609)
Q Consensus 439 ----------D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~--------~~V~~l~~s-p~~~--~llasggGs~Dg 491 (609)
| +.|..+|..++ +.+..++ .|. .++. +... .+|. .+++.+ +.+|
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG------~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~--~~~G 346 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSG------EVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHA--DRNG 346 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTC------CEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEE--CTTS
T ss_pred ccCCCcccccCCcccceEEEEeCCCC------CEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEE--CCCc
Confidence 2 58999999999 4444432 221 1221 1221 3454 355555 5899
Q ss_pred eEEEEECCCCceeEEEcCCCC----------------------------------------------eEEEEEcCCCCeE
Q psy4876 492 HIYFWNVSSGACLDSIDTKSQ----------------------------------------------VCALLWNSDYKEL 525 (609)
Q Consensus 492 ~I~iwd~~t~~~~~~~~~~~~----------------------------------------------v~sl~~s~~g~~l 525 (609)
.++++|..+|+.+..+..... ...++++|+...+
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 999999999998876643320 0134666666666
Q ss_pred EEEEe-------------------------------cCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 526 VSAHG-------------------------------FAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 526 ~~~sG-------------------------------~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
++... ..+|.|.-||..+++.+.....+. .+..-.....+.+|+.++.
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~ 505 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTG 505 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECT
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECC
Confidence 55321 136889999999999887765332 2222222235678888999
Q ss_pred CCCEEEEEcCCCccchhhhh
Q psy4876 575 DETLRLWKIFEKVKSKKKEI 594 (609)
Q Consensus 575 Dg~I~iWdl~~~~~~~k~~~ 594 (609)
|+.|+.||..+++..-+.+.
T Consensus 506 dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 506 DGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp TSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEECCCCCEEEEecC
Confidence 99999999999887655443
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.58 E-value=0.00031 Score=71.30 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=143.5
Q ss_pred EEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCeEEE
Q psy4876 283 LAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGTVQL 361 (609)
Q Consensus 283 la~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~I~i 361 (609)
|..+....|+..|+.+ .....+. .....+.+++|++.+..|+.+ ..++.|..
T Consensus 4 ll~~~~~~I~~i~~~~-------------------------~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~ 56 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDR-------------------------SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICS 56 (316)
T ss_dssp EEEECBSSEEEEETTS-------------------------CCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEECCCeEEEEECCC-------------------------cceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEE
Confidence 4456667788888877 4433332 234568899999876655555 45689999
Q ss_pred EeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEE
Q psy4876 362 WDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLA 434 (609)
Q Consensus 362 wd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~la 434 (609)
+++.. ......+...-.....++++ +.++++-...+.|.+.++.... ....+........+++++|.+..|+
T Consensus 57 ~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly 135 (316)
T 1ijq_A 57 TQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMY 135 (316)
T ss_dssp EEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEE
T ss_pred EECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEE
Confidence 99876 22223333222344566653 3455555677899999987542 2223333345678999999666665
Q ss_pred EEeCC--CcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC--
Q psy4876 435 SGGND--NLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT-- 509 (609)
Q Consensus 435 sgs~D--g~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~-- 509 (609)
.+... +.|...++... ....+ ...-.....|+|++++..++++- +..+.|..+|+...........
T Consensus 136 ~~d~~~~~~I~~~~~dG~-------~~~~~~~~~~~~P~gla~d~~~~~lY~~D--~~~~~I~~~d~dg~~~~~~~~~~~ 206 (316)
T 1ijq_A 136 WTDWGTPAKIKKGGLNGV-------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEK 206 (316)
T ss_dssp EEECSSSCEEEEEETTSC-------CEEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTT
T ss_pred EEccCCCCeEEEEcCCCC-------CeEEEEECCCCCceEEEEeccCCEEEEEE--CCCCeEEEEecCCCceEEEeecCC
Confidence 55543 68888888643 22222 22345678999999887888776 3678999999974332222222
Q ss_pred -CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 510 -KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 510 -~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
......+++. +..++.+ ....+.|..++..+++.+..+..
T Consensus 207 ~~~~P~giav~--~~~ly~~-d~~~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 207 RLAHPFSLAVF--EDKVFWT-DIINEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TTSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCCCEEEEC
T ss_pred ccCCcEEEEEE--CCEEEEE-ECCCCeEEEEeCCCCcceEEEec
Confidence 2356778884 3455554 35678999999877776665543
No 257
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.57 E-value=2.5e-05 Score=75.70 Aligned_cols=181 Identities=11% Similarity=0.036 Sum_probs=124.1
Q ss_pred ceeEEEEEecCCCeEE-EEcC--CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 269 DYYLNLIDWSHFNVLA-VALG--GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla-~s~d--g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
..+...|.|+.+.++. .+.. ..|+.+|+.+ ++......+. ..........
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~t-------------------------gkv~~~~~l~--~~~fgeGi~~ 72 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLET-------------------------GRILQRAEVP--PPYFGAGIVA 72 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTT-------------------------CCEEEEEECC--TTCCEEEEEE
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCC-------------------------CCEEEEEeCC--CCcceeEEEE
Confidence 4567889998855444 3343 4899999999 6665555543 2233333333
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---C
Q psy4876 346 EGYMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---Q 419 (609)
Q Consensus 346 dg~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~ 419 (609)
.++.|+. ...++.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|..+.. .+..+.- +. .
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~-~~~~I~V~~~g~~~~ 150 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQ-QVGSIKVTAGGRPLD 150 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCC-EEEEEECEETTEECC
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCe-EEEEEEEccCCcccc
Confidence 4545554 4467899999999999999988543 336778888777777778999999999874 4444432 21 3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccEEEEEEcCCCCcEEEEE
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~llasg 485 (609)
.++.+.|. +|+.++..-.+..|.+.|..+++ .+..+.. ...-.+.|+|+|+++.++++|
T Consensus 151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~------V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 151 NLNELEWV-NGELLANVWLTSRIARIDPASGK------VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEEECTTTCB------EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred cceeeEEe-CCEEEEEECCCCeEEEEECCCCC------EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 45667776 67666666568899999999983 3333321 123568999999999999987
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.56 E-value=1e-05 Score=79.31 Aligned_cols=180 Identities=15% Similarity=0.070 Sum_probs=124.5
Q ss_pred ceeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
..+...|.|+.+. +++.+.+|.|+++|+++ ++..... +...--...+++ ++
T Consensus 54 ~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~T-------------------------gkv~~~~-l~~~~FgeGit~--~g 105 (268)
T 3nok_A 54 NAFTQGLVFHQGHFFESTGHQGTLRQLSLES-------------------------AQPVWME-RLGNIFAEGLAS--DG 105 (268)
T ss_dssp TCCEEEEEEETTEEEEEETTTTEEEECCSSC-------------------------SSCSEEE-ECTTCCEEEEEE--CS
T ss_pred ccccceEEEECCEEEEEcCCCCEEEEEECCC-------------------------CcEEeEE-CCCCcceeEEEE--eC
Confidence 3456778888654 44456678899999998 5554444 532211223444 44
Q ss_pred CEEEE-EeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEcc--CC---CCe
Q psy4876 348 YMLGV-GTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQN--HT---QEV 421 (609)
Q Consensus 348 ~~Las-gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~--h~---~~V 421 (609)
+.|+. ...++.+.+||..+.+.+.++... ..-..+++++..|+.+..++.|.++|..+.. .+..+.- +. ..+
T Consensus 106 ~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~-v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 106 ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFA-LVGAVQVKLRGQPVELI 183 (268)
T ss_dssp SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCC-EEEEEECEETTEECCCE
T ss_pred CEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCe-EEEEEEeCCCCcccccc
Confidence 44444 456789999999999999998853 3346778888888888889999999998874 4444432 22 245
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccEEEEEEcCCCCcEEEEE
Q psy4876 422 CGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 422 ~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V~~l~~sp~~~~llasg 485 (609)
+.+.|. +|+.++..-.++.|.+.|..++ +.+..+.. ...-.+.|+|+|+++.|+++|
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATG------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTC------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCC------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 677887 7766666656889999999998 34433321 123568999999999999987
No 259
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=2.2e-05 Score=86.68 Aligned_cols=254 Identities=13% Similarity=0.052 Sum_probs=151.5
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-C--CCCeEE-EEEccCCCEEEEEeC-
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-G--NENVCS-VAWIQEGYMLGVGTS- 355 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h--~~~V~~-v~~spdg~~Lasgs~- 355 (609)
.+++++.|+.|+.+|..+ ++..-...+. + ...+.+ ... .+..+++++.
T Consensus 117 ~v~v~~~dg~l~alD~~t-------------------------G~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~ 169 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKT-------------------------GKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSG 169 (571)
T ss_dssp EEEEECTTSEEEEEETTT-------------------------CCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBC
T ss_pred EEEEEeCCCEEEEEECCC-------------------------CCEEEEecCCCCCccceeccCCEE--ECCEEEEEecC
Confidence 366667789999999988 4433222221 1 001111 111 1345666665
Q ss_pred -----CCeEEEEeCCCCeeEEEecCCCCc-------------------------------------e-EEEEec--CCEE
Q psy4876 356 -----LGTVQLWDVSAKKKCRTMDGHDVR-------------------------------------V-GALAWN--TYIL 390 (609)
Q Consensus 356 -----dg~I~iwd~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~~--~~~L 390 (609)
+|.|..+|..+++.+-.+...... + ..++++ ...+
T Consensus 170 ~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~v 249 (571)
T 2ad6_A 170 AELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLF 249 (571)
T ss_dssp GGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEE
T ss_pred CccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeE
Confidence 789999999999988766532111 0 123443 3456
Q ss_pred EEEecC----------------CeEEEEEcCCCCeeEEEEcc--CC--------CCeEEEEEccCCC---EEEEEeCCCc
Q psy4876 391 SSGSRC----------------GNIVHHDVRSRDHKVALLQN--HT--------QEVCGLKWSPDGR---YLASGGNDNL 441 (609)
Q Consensus 391 ~sgs~d----------------g~I~iwd~~~~~~~~~~~~~--h~--------~~V~~l~~spdg~---~lasgs~Dg~ 441 (609)
+.+..+ +.|..+|..+++ .+..++. |. .++ -+....+|+ .++.++.+|.
T Consensus 250 y~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~ 327 (571)
T 2ad6_A 250 YYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGI 327 (571)
T ss_dssp EEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSE
T ss_pred EEECCCCccccCCccCCCceeEEEEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcE
Confidence 555532 369999999875 5555442 21 222 123334774 5778889999
Q ss_pred EEEEeCCCCCCCCCccceEeecCCc-------------ccE--------------------------EEEEEcCCCCcEE
Q psy4876 442 LNIWSGVPGQHTFSTQPIHSLSRHQ-------------AAV--------------------------KAIAWCPWSPNVL 482 (609)
Q Consensus 442 I~iwd~~~~~~~~~~~~~~~~~~h~-------------~~V--------------------------~~l~~sp~~~~ll 482 (609)
++++|..+++. +....... .++ ..++++|+...++
T Consensus 328 l~~lD~~tG~~------~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~y 401 (571)
T 2ad6_A 328 LYTLNRENGNL------IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLY 401 (571)
T ss_dssp EEEEETTTCCE------EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred EEEEECCCCCE------EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEE
Confidence 99999998843 32221100 111 2356777765555
Q ss_pred EEEe-------------------------------c---cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEE
Q psy4876 483 ASGG-------------------------------G---TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSA 528 (609)
Q Consensus 483 asgg-------------------------------G---s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~ 528 (609)
+... | ..++.|..||+.+++.+..+.....+....+...+..+++
T Consensus 402 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~- 480 (571)
T 2ad6_A 402 AGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY- 480 (571)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE-
T ss_pred EEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE-
Confidence 4321 0 1358999999999999888776554444344445666766
Q ss_pred EecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCCEEEE
Q psy4876 529 HGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDETTVLS 571 (609)
Q Consensus 529 sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~L~s 571 (609)
+..++.|+.||..+++.+..+...... -.-+.+..+|+.++.
T Consensus 481 -g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 481 -ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp -ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -EcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 458999999999999999888643221 122345567775443
No 260
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.51 E-value=0.0013 Score=65.93 Aligned_cols=237 Identities=9% Similarity=0.079 Sum_probs=167.9
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+.-.+|..+.||.-. ...++|+|+++.+.+..+.- ...|.--.| +.+.|+..+. ..|+.|++.....+.+.+..|.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSEEEEEES-SEEEEEESSTTCCCEEEEECCG
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCCeEEEEcC-CcEEEEcccCCCCCceeeecch
Confidence 344588888888766 57899999999988888774 356666677 7788777765 5799999987656777776654
Q ss_pred ----CCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCC--CCcEEEEE
Q psy4876 419 ----QEVCGLKWSPDGRYLASGGN-------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPW--SPNVLASG 485 (609)
Q Consensus 419 ----~~V~~l~~spdg~~lasgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~llasg 485 (609)
..|.....+++.+|++..+- .|.+.+|..+.. .-+.+++|.+....+.+..+ ...+++.+
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 220 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFA 220 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCSSCEEEEEEE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeeeeeeEEEecCCCCCCceEEEEE
Confidence 56777888999998776552 367899998864 55677888766554444322 12344443
Q ss_pred e-ccCCCeEEEEECCCC---ce-----eEEEc-----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 486 G-GTADRHIYFWNVSSG---AC-----LDSID-----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 486 g-Gs~Dg~I~iwd~~t~---~~-----~~~~~-----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
. +...++++|-++... .. ...+. ...-..++..++.+..++..+ .-|.|++||+.++.++..-+
T Consensus 221 ~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviT--K~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 221 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEe--CCcEEEEEEcccCcEEEEec
Confidence 2 112368999998532 11 11111 123567889999999988876 79999999999999998887
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
-..+.|...+-+.+..=++.....|.|.--.+.+...
T Consensus 299 IS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~i 335 (365)
T 2xzh_A 299 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 335 (365)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTH
T ss_pred cCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccE
Confidence 7778887777666655677777888887777766543
No 261
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.51 E-value=0.00056 Score=71.89 Aligned_cols=244 Identities=9% Similarity=-0.032 Sum_probs=155.8
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCe
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGT 358 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~ 358 (609)
..+|..+....|+..++.. .....+. .....+..|+|++.+..|+.+ ...+.
T Consensus 83 ~~~ll~~~~~~I~~i~l~~-------------------------~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~ 135 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDR-------------------------SEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRM 135 (400)
T ss_dssp SCEEEEEETTEEEEECTTS-------------------------CSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred cceeEEeccceeEEEccCC-------------------------cceeEec--cccCcceEEeeeeccCceEEEecCCCe
Confidence 3466677778999999876 4433332 245678899999876666555 45678
Q ss_pred EEEEeCCCC----eeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 359 VQLWDVSAK----KKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 359 I~iwd~~~~----~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
|..+++... .....+.........++++ ++++++-...+.|.+.++.... ....+...-....+|++.|.+.
T Consensus 136 I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 136 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp EEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTT
T ss_pred EEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccC
Confidence 999998752 2333344344456666663 4555666667899999988653 3333333445688999999766
Q ss_pred EEEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC
Q psy4876 432 YLASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT 509 (609)
Q Consensus 432 ~lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~ 509 (609)
+|+.... .+.|...++... .....+...-.....|++++++..|+++- +..+.|..+|+........+..
T Consensus 215 ~ly~td~~~~~~I~~~~~dG~------~~~~~~~~~l~~P~glavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~ 286 (400)
T 3p5b_L 215 FMYWTDWGTPAKIKKGGLNGV------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILED 286 (400)
T ss_dssp EEEEEECSSSCCEEEEETTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCCEEEEEC
T ss_pred eEEEEeCCCCCEEEEEeCCCC------ccEEEEECCCCceEEEEEEeCCCEEEEEE--CCCCEEEEEeCCCCccEEEEeC
Confidence 6665543 368999988754 22222233335678999999887787775 3678999999875443333332
Q ss_pred ---CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 510 ---KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 510 ---~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
-.....+++ ++..++.+ ....+.|..++..+++.+..+........+|.+
T Consensus 287 ~~~l~~P~gl~v--~~~~lywt-d~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 287 EKRLAHPFSLAV--FEDKVFWT-DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp SSTTSSEEEEEE--ETTEEEEE-ESSSCSEEEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred CCCCCCCEEEEE--eCCEEEEe-cCCCCeEEEEEcCCCCceEEEecCCCCCceEEE
Confidence 235567776 34455554 346788999998888777776654444555544
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=3.7e-05 Score=75.28 Aligned_cols=186 Identities=8% Similarity=0.019 Sum_probs=128.9
Q ss_pred eeeeecCC--CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCC-ceEEEEecC-CEEEEEecCCeEEEEE
Q psy4876 328 HLMDLEGN--ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDV-RVGALAWNT-YILSSGSRCGNIVHHD 403 (609)
Q Consensus 328 ~l~~~~h~--~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~~~-~~L~sgs~dg~I~iwd 403 (609)
.+.++.|+ .....+.|+ ++.+..+.+.+|.|+++|+++++.+..+ -... --..+++.+ .+.+....++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 34455543 445788887 3556666677789999999999988877 2222 223466754 5555556789999999
Q ss_pred cCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC--Cc---ccEEEEEEcCCC
Q psy4876 404 VRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR--HQ---AAVKAIAWCPWS 478 (609)
Q Consensus 404 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~---~~V~~l~~sp~~ 478 (609)
..+. ..+..+... ..-.+++ +|++.|+.+..++.|+++|..+. +.+..+.. +. ..+..+.|. +|
T Consensus 123 ~~Tl-~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~------~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 123 GMPP-QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF------ALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp TTTT-EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CCcC-cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCC------eEEEEEEeCCCCcccccccccEEe-CC
Confidence 9987 466666532 2223444 56788888777899999999987 44444432 11 245677877 55
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEE
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~s 529 (609)
.+++.. ..+..|.+.|..+|+.+..++.. .-...|+|+|+++.|+++.
T Consensus 192 -~lyanv--w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 -VIYANI--WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp -EEEEEE--TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred -EEEEEE--CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 566654 36889999999999999888642 2568999999988887753
No 263
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=5.1e-06 Score=93.55 Aligned_cols=245 Identities=10% Similarity=-0.010 Sum_probs=134.6
Q ss_pred cceeeeeeec--CCCCeEEEEEccCCCEEEEEeC-CCeEEEEeCCCCeeEEE--ecCCCCceEEEEe-cCCEEEEEe-cC
Q psy4876 324 RAIDHLMDLE--GNENVCSVAWIQEGYMLGVGTS-LGTVQLWDVSAKKKCRT--MDGHDVRVGALAW-NTYILSSGS-RC 396 (609)
Q Consensus 324 ~~~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~-dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~-~~~~L~sgs-~d 396 (609)
+....+..+. +.....++++..+|+++++|+. +..+.+||..+++-... +........++.. ++++++.|+ .+
T Consensus 229 ~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~ 308 (656)
T 1k3i_A 229 GIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWS 308 (656)
T ss_dssp CCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCC
T ss_pred CcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCccc
Confidence 5555554443 3344456788899999999884 45899999987654332 2222223344555 789999988 34
Q ss_pred -----CeEEEEEcCCCCeeEEEEccC-----CCCeEEEEEccCCCEEEEEeCCC---------cEEEEeCCCCCCCCCcc
Q psy4876 397 -----GNIVHHDVRSRDHKVALLQNH-----TQEVCGLKWSPDGRYLASGGNDN---------LLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 397 -----g~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~lasgs~Dg---------~I~iwd~~~~~~~~~~~ 457 (609)
..+.+||..+.. -..+... ...-....+..++..++.|+.+| .+..||..+.... .
T Consensus 309 ~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~---~ 383 (656)
T 1k3i_A 309 GGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV---K 383 (656)
T ss_dssp SSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE---E
T ss_pred CCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCccee---e
Confidence 468999998753 2222100 00000012224555555565443 5678888765211 1
Q ss_pred ceEeecC------CcccEEEEEEcCCCCcEEEEEeccC-C-----C---eEEEEECCCCceeEEE--cCC-C-CeEEEEE
Q psy4876 458 PIHSLSR------HQAAVKAIAWCPWSPNVLASGGGTA-D-----R---HIYFWNVSSGACLDSI--DTK-S-QVCALLW 518 (609)
Q Consensus 458 ~~~~~~~------h~~~V~~l~~sp~~~~llasggGs~-D-----g---~I~iwd~~t~~~~~~~--~~~-~-~v~sl~~ 518 (609)
....... ....-.++.|...+..+++.||... + . .|.+||..+..-.... ... . .-.+++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~ 463 (656)
T 1k3i_A 384 SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 463 (656)
T ss_dssp EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEE
T ss_pred cCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEE
Confidence 1111100 0112245555554557888875211 1 1 6888888876654433 111 1 2345566
Q ss_pred cCCCCeEEEEEecC----------CCeEEEEECCCCceEE--EEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 519 NSDYKELVSAHGFA----------QNQLIIWKYPSLVKVA--ELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 519 s~~g~~l~~~sG~~----------dg~I~Iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
.++++.+++. |.. -..+.+||..+.+-.. .+...........+.|||++++.||.
T Consensus 464 l~~g~i~v~G-G~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 464 LPDGSTFITG-GQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTSCEEEEC-CBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEC-CcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 7888888774 322 2568999987654221 11111222234556799999999885
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.46 E-value=9.1e-05 Score=71.79 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=128.5
Q ss_pred eeeeeeecCC--CCeEEEEEccCCCEEEEEeCC--CeEEEEeCCCCeeEEEecCCCCce-EEEEecC-CEEEEEecCCeE
Q psy4876 326 IDHLMDLEGN--ENVCSVAWIQEGYMLGVGTSL--GTVQLWDVSAKKKCRTMDGHDVRV-GALAWNT-YILSSGSRCGNI 399 (609)
Q Consensus 326 ~~~l~~~~h~--~~V~~v~~spdg~~Lasgs~d--g~I~iwd~~~~~~~~~l~~h~~~V-~~l~~~~-~~L~sgs~dg~I 399 (609)
.+.+.+++|+ .....+.|+. +.++.+.+.+ ..|+++|+.+++.++.+....... ..++..+ ++......++.+
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEE
Confidence 3455555644 5577999986 4444444444 489999999999988876443322 3455544 555555678999
Q ss_pred EEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCc-----ccEEEEEE
Q psy4876 400 VHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQ-----AAVKAIAW 474 (609)
Q Consensus 400 ~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~l~~ 474 (609)
.+||..+. ..+..+.... .-.+++ +++..|+.+..++.|.++|..+. +.+..+.... ..+..+.|
T Consensus 88 ~v~D~~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~------~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 88 FVYDLATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTL------QQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEETTTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTC------CEEEEEECEETTEECCCEEEEEE
T ss_pred EEEECCcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCC------eEEEEEEEccCCcccccceeeEE
Confidence 99999987 4666665332 223444 56777777677899999999987 4444443321 34566777
Q ss_pred cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEE
Q psy4876 475 CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------------SQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 475 sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~s 529 (609)
. +| .+++.. -.+..|.+.|..+|+.+..++.. .-...|+|+|+++.|+++.
T Consensus 158 ~-~G-~lyanv--w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 158 V-NG-ELLANV--WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp E-TT-EEEEEE--TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred e-CC-EEEEEE--CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6 34 466554 35789999999999999888622 2468999999988888764
No 265
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00039 Score=71.64 Aligned_cols=238 Identities=9% Similarity=-0.015 Sum_probs=150.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeE
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKV 411 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~ 411 (609)
.+..+|.+..++ .+|+.+.. ..|+..++........+. ....+..++|+ +.++++-...+.|..+++.... ..
T Consensus 33 ~d~~~C~~~~~~-~~ll~~~~-~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~ 108 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VE 108 (349)
T ss_dssp TTSSCEEESSSC-CEEEEECB-SCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CCCCcccccccC-ceeEeecc-cceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ce
Confidence 344556665553 45554444 568888887655444444 34557889995 3455555567889999988653 22
Q ss_pred EEEccCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC
Q psy4876 412 ALLQNHTQEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 412 ~~~~~h~~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D 490 (609)
..+........++++.+.+..| ++-...+.|.+.++... .....+.........++++|.+..++.+.. ..
T Consensus 109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~ 180 (349)
T 3v64_C 109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GN 180 (349)
T ss_dssp EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECTTCSCEEEEEEETTTTEEEEEEC--SS
T ss_pred EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC------ceEEEEeCCCCCcceEEEecCcCeEEEecc--CC
Confidence 3333333456789999855444 55555678999998754 222223333456789999998778887763 34
Q ss_pred -CeEEEEECCCCceeEEE-c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCC
Q psy4876 491 -RHIYFWNVSSGACLDSI-D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDET 567 (609)
Q Consensus 491 -g~I~iwd~~t~~~~~~~-~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 567 (609)
+.|..+++.... ...+ . .-.....+++++++..|+.+- ...+.|..+++........+.........|++. .+.
T Consensus 181 ~~~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ 257 (349)
T 3v64_C 181 TPRIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDS 257 (349)
T ss_dssp SCEEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTE
T ss_pred CCEEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEE-CCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCE
Confidence 889999987433 3333 2 234678999999888888764 467899999987544333343344566788883 444
Q ss_pred EEEEEECCCCEEEEEcCCCc
Q psy4876 568 TVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 568 ~L~s~s~Dg~I~iWdl~~~~ 587 (609)
++++-...+.|..++-.++.
T Consensus 258 ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCCeEEEEEccCCC
Confidence 44555556777777754443
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.43 E-value=0.00034 Score=71.13 Aligned_cols=244 Identities=8% Similarity=0.010 Sum_probs=148.1
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE-EEeCCCeE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG-VGTSLGTV 359 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La-sgs~dg~I 359 (609)
-+|..+....|+..++.. ........+.....+.+++|.+.+..|+ +-...+.|
T Consensus 5 p~ll~~~~~~I~~i~l~~-------------------------~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I 59 (318)
T 3sov_A 5 PLLLYANRRDLRLVDATN-------------------------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAI 59 (318)
T ss_dssp CEEEEECEEEEEEEETTC-------------------------TTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEE
T ss_pred cEEEEEccCeEEEEECCC-------------------------CceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcE
Confidence 355566677888898876 2211111111224577899998655554 44556789
Q ss_pred EEEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 360 QLWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 360 ~iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
..+++..+.. ...+...-.....++++ +.++++-...+.|.++++.... .............+|++.|.+..|+.
T Consensus 60 ~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 60 KRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp EEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred EEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 9999876532 12222222334455553 4555666667899999987643 22233344456789999997666665
Q ss_pred EeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCC
Q psy4876 436 GGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQ 512 (609)
Q Consensus 436 gs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~ 512 (609)
+.. .+.|...++... .........-.....|+|++++..|+.+- +..+.|..+|+........+. ....
T Consensus 139 td~~~~~~I~r~~~dG~------~~~~~~~~~l~~Pnglavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~ 210 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGS------SRFIIINSEIYWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPH 210 (318)
T ss_dssp EECSSSCEEEEEETTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSCCSC
T ss_pred EecCCCCEEEEEEcCCC------CeEEEEECCCCCccEEEEeccCCEEEEEE--CCCCEEEEEcCCCCceEEEecCCCCC
Confidence 552 578888888743 11112222334568999999887888775 367899999987433322233 2345
Q ss_pred eEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 513 VCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
...+++. +..++.+ ....+.|..++..+++....+........+|+
T Consensus 211 P~glav~--~~~lywt-d~~~~~V~~~~~~~G~~~~~i~~~~~~P~~i~ 256 (318)
T 3sov_A 211 PFALTLF--EDILYWT-DWSTHSILACNKYTGEGLREIHSDIFSPMDIH 256 (318)
T ss_dssp EEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCSCEEEECCCSSCCCEE
T ss_pred ceEEEEe--CCEEEEE-ecCCCeEEEEECCCCCceEEEeCCCCCCcEEE
Confidence 6777775 3345444 44688999999888876666544333333443
No 267
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=0.00037 Score=79.89 Aligned_cols=272 Identities=10% Similarity=-0.005 Sum_probs=172.2
Q ss_pred eeEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee------------ec-CC
Q psy4876 270 YYLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD------------LE-GN 335 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~-h~ 335 (609)
..|.+|...+++ +..++..+.|.++|..+ ........ .. ..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~-------------------------~~~~~~~~~~f~~~~~~~~~~~l~~ 312 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQ-------------------------NQFLLPEQIRFEFIREGDNNYSLSN 312 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTC-------------------------C---------CEEECBCSSTTSBSS
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCC-------------------------CeeeeeeccccccccCCCCCCCCCC
Confidence 357888887777 44455548899999876 22211111 01 35
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec---------CCCCceEEEEecC-CEEEEEecCCeEEEEEcC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD---------GHDVRVGALAWNT-YILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~~~-~~L~sgs~dg~I~iwd~~ 405 (609)
..|.++....+|.+ .+|+.++-|..|+........... .....|.++..+. ..|..|+.++-|..||..
T Consensus 313 ~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~ 391 (781)
T 3v9f_A 313 ASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENG 391 (781)
T ss_dssp SCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETT
T ss_pred CeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECC
Confidence 67999999888864 457766779999987654332211 1235688888853 567778877779999876
Q ss_pred CCCeeEEEE----ccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec---CCcccEEEEEEcCCC
Q psy4876 406 SRDHKVALL----QNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS---RHQAAVKAIAWCPWS 478 (609)
Q Consensus 406 ~~~~~~~~~----~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~l~~sp~~ 478 (609)
+.. ...+ ......|.++...++|.+.+ |+.++-|..+|..++ + ...+. .....|.++...+++
T Consensus 392 ~~~--~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~------~-~~~~~~~~~~~~~v~~i~~d~~g 461 (781)
T 3v9f_A 392 KRV--AIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK------K-FQIIELEKNELLDVRVFYEDKNK 461 (781)
T ss_dssp EEE--EECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC------E-EEECCSTTTCCCCEEEEEECTTS
T ss_pred CCe--EEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC------c-EEEeccCCCCCCeEEEEEECCCC
Confidence 531 2111 12346789999888887555 666677899998765 2 22221 234678999888876
Q ss_pred CcEEEEEeccCCCeEEEEECCCCceeEEEcC------CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 479 PNVLASGGGTADRHIYFWNVSSGACLDSIDT------KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 479 ~~llasggGs~Dg~I~iwd~~t~~~~~~~~~------~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
. +.+.. . +-|..||..+++....... ...|.++...++|...+.. ..+-|..||..+.+. ..+..
T Consensus 462 ~-lwigt---~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~~~Gl~~~~~~~~~~-~~~~~ 532 (781)
T 3v9f_A 462 K-IWIGT---H-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT---FGGGVGIYTPDMQLV-RKFNQ 532 (781)
T ss_dssp E-EEEEE---T-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE---SSSCEEEECTTCCEE-EEECT
T ss_pred C-EEEEE---C-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE---cCCCEEEEeCCCCeE-EEccC
Confidence 3 44432 3 5699999887765443322 2468899999988876642 345588888766543 33321
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 553 ----HSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 553 ----h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
....|.++...++|.+.++ +.+|.|..||..+..
T Consensus 533 ~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 533 YEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFD 570 (781)
T ss_dssp TTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCC
T ss_pred CCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCc
Confidence 2356899999888885554 446655777776543
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.40 E-value=0.0004 Score=72.62 Aligned_cols=236 Identities=8% Similarity=-0.035 Sum_probs=150.3
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEE
Q psy4876 338 VCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 338 V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~ 414 (609)
-.|.+..+ ..+|+.+.. ..|+.+++........+. ....+..++|+ +.++++-...+.|..+++.... ....+
T Consensus 79 ~~C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~ 154 (386)
T 3v65_B 79 RSCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVV 154 (386)
T ss_dssp SCEEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEE
T ss_pred CeECCccc-cceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEE
Confidence 34555444 345554444 568889987765544444 34557889995 3455555567889999988653 22333
Q ss_pred ccCCCCeEEEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC-Ce
Q psy4876 415 QNHTQEVCGLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-RH 492 (609)
Q Consensus 415 ~~h~~~V~~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D-g~ 492 (609)
........++++.+.+..| ++-...+.|.+.++... .....+.........|+++|.+..++.+.. .. +.
T Consensus 155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~ 226 (386)
T 3v65_B 155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPR 226 (386)
T ss_dssp CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC------SCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCE
T ss_pred eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC------ceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCE
Confidence 3333456788999855544 45455678998888754 222223333456789999998878887763 34 78
Q ss_pred EEEEECCCCceeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEE
Q psy4876 493 IYFWNVSSGACLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLS 571 (609)
Q Consensus 493 I~iwd~~t~~~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s 571 (609)
|..+++........+.. -.....|+|++++..|+.+- ...+.|..+++........+.........|++. .+.++++
T Consensus 227 I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~t 304 (386)
T 3v65_B 227 IEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWT 304 (386)
T ss_dssp EEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEE-TTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEE
T ss_pred EEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEE-CCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEe
Confidence 99999875433333332 34688999999888888764 467889999987544433344344566788883 4445555
Q ss_pred EECCCCEEEEEcCCCc
Q psy4876 572 AGADETLRLWKIFEKV 587 (609)
Q Consensus 572 ~s~Dg~I~iWdl~~~~ 587 (609)
....+.|..++..++.
T Consensus 305 d~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 305 DWHTKSINSANKFTGK 320 (386)
T ss_dssp ETTTTEEEEEETTTCC
T ss_pred eCCCCeEEEEECCCCc
Confidence 5566778888754544
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.39 E-value=0.00025 Score=71.79 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=134.5
Q ss_pred EEEEecCCC--eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee------------------
Q psy4876 273 NLIDWSHFN--VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL------------------ 332 (609)
Q Consensus 273 ~~l~wsp~~--lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------ 332 (609)
..++|++++ +++...++.|+.|+..+ +....+...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~ 76 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPN-------------------------SGFVDFAYASPYWNKAFCENSTDAEKR 76 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTT-------------------------TCEEEEEESCTTCCHHHHTTCCCGGGH
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCC-------------------------CceEEEecccccccccccccccchhcc
Confidence 447888875 55555678999998776 222211110
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCeeEEEecC-----CCCceEEEEec---CCEEEEEec--------
Q psy4876 333 EGNENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDG-----HDVRVGALAWN---TYILSSGSR-------- 395 (609)
Q Consensus 333 ~h~~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~-----h~~~V~~l~~~---~~~L~sgs~-------- 395 (609)
.....+..+++.+ +| .|+++...+.|.++|..++.. ..+.. .......++++ +.+.++-..
T Consensus 77 ~~~~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 77 PLCGRTYDISYNLQNN-QLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp HHHCCEEEEEEETTTT-EEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred ccCCCCceEEEcCCCC-cEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCccccccccc
Confidence 0113578899998 55 455565555688898776543 22211 11245667774 344444322
Q ss_pred ---------CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCC
Q psy4876 396 ---------CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRH 465 (609)
Q Consensus 396 ---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 465 (609)
+|.|..||..++. +..+.........|+|+++|++|.++ ...+.|.+|++..... .....+...
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~----~~~~~~~~~ 228 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK----GTAEVLVKI 228 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT----TCEEEEEEC
T ss_pred ceehcccCCCceEEEEeCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC----CccceEEeC
Confidence 3678888876653 22222122345689999999866655 4568899999875311 111111112
Q ss_pred cccEEEEEEcCCCCcEEEEEec--------cCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecC
Q psy4876 466 QAAVKAIAWCPWSPNVLASGGG--------TADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFA 532 (609)
Q Consensus 466 ~~~V~~l~~sp~~~~llasggG--------s~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~ 532 (609)
.+ ...+++.++|. ++++..+ ...+.|..+|. .++.+..+... ..+..+++ .++ .|+++ +..
T Consensus 229 ~g-P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~ 302 (322)
T 2fp8_A 229 PN-PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLF 302 (322)
T ss_dssp SS-EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSS
T ss_pred CC-CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecC
Confidence 23 67899999985 5555421 01467888886 47777766543 24666666 344 44443 346
Q ss_pred CCeEEEEECC
Q psy4876 533 QNQLIIWKYP 542 (609)
Q Consensus 533 dg~I~Iwd~~ 542 (609)
.+.|.++++.
T Consensus 303 ~~~i~~~~~~ 312 (322)
T 2fp8_A 303 HGSVGILVYD 312 (322)
T ss_dssp CSEEEEEEC-
T ss_pred CCceEEEecc
Confidence 7788888864
No 270
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.38 E-value=0.0023 Score=65.07 Aligned_cols=268 Identities=10% Similarity=0.059 Sum_probs=147.1
Q ss_pred eEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeee-ec-CCCCeEEEEEccCC
Q psy4876 271 YLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMD-LE-GNENVCSVAWIQEG 347 (609)
Q Consensus 271 ~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-h~~~V~~v~~spdg 347 (609)
.+..|.+.++ .+++++..+.|+.. ...+ ...+.+.. .. ....+.+|.|.+ +
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~s-~DgG------------------------~tW~~~~~~~~~~~~~~~~i~~~~-~ 90 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLMET-RDGG------------------------QTWEPRTLVLDHSDYRFNSVSFQG-N 90 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEEE-SSTT------------------------SSCEECCCCCSCCCCEEEEEEEET-T
T ss_pred cEEEEEECCCCcEEEEcCCCeEEEe-CCCC------------------------CCCeECCCCCCCCCccEEEEEecC-C
Confidence 4777888655 46667877766433 2220 12222211 11 245688899976 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec---CCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD---GHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..++ ++..|.|.. ..+.++.-..+. .+...+..+.+ ++..++.++.+|.|..- .+.+..-......+...+..
T Consensus 91 ~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 91 EGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEE
T ss_pred eEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEE
Confidence 4444 445565543 333344333332 23345677776 34444445556654331 22222222233455667899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
+++.+++.+++++...+.++-+|-. +. ..+.+. ......+..+.+.+++ .+++.+ .+|.+++.+...|+.
T Consensus 168 ~~~~~~~~~~~~g~~G~~~~S~d~g-G~---tW~~~~--~~~~~~~~~~~~~~~g-~~~~~~---~~G~~~~s~~D~G~t 237 (327)
T 2xbg_A 168 LNRSPSGEYVAVSSRGSFYSTWEPG-QT---AWEPHN--RTTSRRLHNMGFTPDG-RLWMIV---NGGKIAFSDPDNSEN 237 (327)
T ss_dssp EEECTTSCEEEEETTSSEEEEECTT-CS---SCEEEE--CCSSSCEEEEEECTTS-CEEEEE---TTTEEEEEETTEEEE
T ss_pred EEEcCCCcEEEEECCCcEEEEeCCC-CC---ceeECC--CCCCCccceeEECCCC-CEEEEe---CCceEEEecCCCCCe
Confidence 9999999888776554434444421 21 012221 2345678899999887 455554 578887775333433
Q ss_pred eEEEcC-----CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe---CCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 504 LDSIDT-----KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH---GHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 504 ~~~~~~-----~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
-..+.. ...+..+.+.+++..+++ | .++.| ++....++.-..+. .+...+.++.|.+++ .++.++.+
T Consensus 238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~ 312 (327)
T 2xbg_A 238 WGELLSPLRRNSVGFLDLAYRTPNEVWLA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQK 312 (327)
T ss_dssp ECCCBCTTSSCCSCEEEEEESSSSCEEEE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECST
T ss_pred eEeccCCcccCCcceEEEEecCCCEEEEE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCC
Confidence 222221 235888999988776665 3 46666 34444444333333 234567889887554 57777789
Q ss_pred CCEEEEE
Q psy4876 576 ETLRLWK 582 (609)
Q Consensus 576 g~I~iWd 582 (609)
|.|.-++
T Consensus 313 G~i~~~~ 319 (327)
T 2xbg_A 313 GILLRYV 319 (327)
T ss_dssp TEEEEEC
T ss_pred ceEEEEc
Confidence 9776554
No 271
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.35 E-value=0.00055 Score=78.43 Aligned_cols=273 Identities=9% Similarity=0.013 Sum_probs=167.9
Q ss_pred eEEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-----c-CCCCeEEEEE
Q psy4876 271 YLNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-----E-GNENVCSVAW 343 (609)
Q Consensus 271 ~v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~-h~~~V~~v~~ 343 (609)
.|.+|...+++ +..++.+ .|.+||..+ +........ . ....|.++..
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~-------------------------~~~~~~~~~~~~~~~l~~~~i~~i~~ 265 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANT-------------------------ETFTNFHNNPGNIHGALSSYIFSIKQ 265 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTT-------------------------TEEEC-----------CCCCEEEEEE
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCC-------------------------CcEEEEEcCCCccccccCceEEEEEE
Confidence 46777777776 5555554 899999876 333222111 1 3467999998
Q ss_pred ccCCCEEEEEeCCCeEEEEeCCCCeeEEEec--------------CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCC
Q psy4876 344 IQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD--------------GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRD 408 (609)
Q Consensus 344 spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~--------------~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~ 408 (609)
.++|.+ .+|+..+-|.++|..++....... .....|.++..+ ...|..|+.++-|..++.....
T Consensus 266 d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~ 344 (781)
T 3v9f_A 266 LKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT 344 (781)
T ss_dssp CTTSEE-EEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS
T ss_pred CCCCCE-EEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc
Confidence 888764 457764558889987765332211 134568888885 3567788878889999887643
Q ss_pred eeEEEEc----------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE-eecCCcccEEEEEEcCC
Q psy4876 409 HKVALLQ----------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH-SLSRHQAAVKAIAWCPW 477 (609)
Q Consensus 409 ~~~~~~~----------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~ 477 (609)
...+. .....|.++...++|.+. .|+.++-|.+||..++.. .... ........|.++...++
T Consensus 345 --~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~----~~~~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 345 --FHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVA----IYNKENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp --CEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEE----ECC-----CCCSBEEEEEECTT
T ss_pred --ceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeE----EEccCCCCCCCcceEEEEECCC
Confidence 22221 123569999998888744 566566688999765411 0000 00123467899988877
Q ss_pred CCcEEEEEeccCCCeEEEEECCCCceeEEEc---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC-
Q psy4876 478 SPNVLASGGGTADRHIYFWNVSSGACLDSID---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH- 553 (609)
Q Consensus 478 ~~~llasggGs~Dg~I~iwd~~t~~~~~~~~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h- 553 (609)
+ .+.+ | +.++-|..+|..+++...... ....|.++...+++...+. + . +.|.+||..+++........
T Consensus 418 g-~lWi-g--t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t--~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 418 G-NLWF-G--TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-T--H-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp S-CEEE-E--ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-E--T-TEEEEEESSSSSCCEEECTTT
T ss_pred C-CEEE-E--eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-E--C-CceEEEeCCCCeEEecccCcc
Confidence 6 4554 2 356779999988775433221 2347889988888775553 2 3 67999998766543322222
Q ss_pred ----CCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 554 ----SARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 554 ----~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...|.++...++|.+.+ |+.++-|..|+..+.
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred cccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 36799999998887555 444444777776554
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.33 E-value=0.0015 Score=66.20 Aligned_cols=227 Identities=10% Similarity=-0.043 Sum_probs=142.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCC---CeeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSR---DHKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 422 (609)
+|+.+.. ..|+..|+...+....+. .......++|+ + .++++-...+.|..+++... ......+...-....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4555544 569999998876655554 34567889995 3 45555556789999998751 112222332334568
Q ss_pred EEEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
++++.+.+..| ++-...+.|.++++... .....+.........++++|.+..++.+..+ ..+.|..+++..
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG- 152 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG- 152 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCC------ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-
Confidence 89998755444 45456789999998743 1212222233567899999987778877531 237899998863
Q ss_pred ceeEEE-c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 502 ACLDSI-D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 502 ~~~~~~-~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
.....+ . .-.....+++++++..|+.+- ...+.|..+|+........+.. .......|++. .+.++++....+.
T Consensus 153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D-~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~ 230 (316)
T 1ijq_A 153 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 230 (316)
T ss_dssp CCEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTE
T ss_pred CCeEEEEECCCCCceEEEEeccCCEEEEEE-CCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCe
Confidence 333333 2 234688999999988888764 3678999999874332222222 23446788885 3455555556678
Q ss_pred EEEEEcCCCc
Q psy4876 578 LRLWKIFEKV 587 (609)
Q Consensus 578 I~iWdl~~~~ 587 (609)
|..++..++.
T Consensus 231 V~~~~~~~g~ 240 (316)
T 1ijq_A 231 IFSANRLTGS 240 (316)
T ss_dssp EEEEETTTCC
T ss_pred EEEEeCCCCc
Confidence 8888876554
No 273
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.31 E-value=0.00071 Score=74.77 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=55.6
Q ss_pred CCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCE-EEEEEeCCCC
Q psy4876 489 ADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARV-LNLAMSPDET 567 (609)
Q Consensus 489 ~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~ 567 (609)
.++.|.-||+.+|+.+-.......+..-.....+..+++ |..|+.|+.||..+++.+..+....+.+ .-+.|..+|+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~ 541 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE 541 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCE
Confidence 368899999999999877765443332222334666776 5589999999999999999887543321 2256667887
Q ss_pred EEE
Q psy4876 568 TVL 570 (609)
Q Consensus 568 ~L~ 570 (609)
..+
T Consensus 542 qYv 544 (582)
T 1flg_A 542 QYL 544 (582)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.29 E-value=0.00044 Score=69.57 Aligned_cols=221 Identities=11% Similarity=0.046 Sum_probs=132.3
Q ss_pred eeEEEEEecCCC-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFN-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
.+...++|++++ ++.+. .++.|+.||... . ...... ....+..+++.++|
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------------------------~-~~~~~~--~~~~p~gia~~~dG 83 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------------------------N-QQIHAT--VEGKVSGLAFTSNG 83 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------------------------C-EEEEEE--CSSEEEEEEECTTS
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------------------------c-eEEEEe--CCCCceeEEEcCCC
Confidence 346779999986 44444 568899998765 2 222222 23568899999999
Q ss_pred CEEEEEeCC-C-eEEEEeCCCCeeEEEecC-CCCceEEEE-ecCCEEEEEe-cCCeEEEEEcCCCCeeEEEEc-------
Q psy4876 348 YMLGVGTSL-G-TVQLWDVSAKKKCRTMDG-HDVRVGALA-WNTYILSSGS-RCGNIVHHDVRSRDHKVALLQ------- 415 (609)
Q Consensus 348 ~~Lasgs~d-g-~I~iwd~~~~~~~~~l~~-h~~~V~~l~-~~~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~------- 415 (609)
+++++.... + .|..+|..+++....... .......++ |.+..++... .+|.|+++|...+...+....
T Consensus 84 ~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~ 163 (306)
T 2p4o_A 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN 163 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred cEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence 866654432 2 477778777765433221 122223333 4444444444 588999999875421222111
Q ss_pred --cCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCC-CCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC
Q psy4876 416 --NHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVP-GQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR 491 (609)
Q Consensus 416 --~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg 491 (609)
..-.....| ++++++|+++. ..+.|.+||+.. +.. .....+.. ......++++++| +++++.. ..+
T Consensus 164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~----~~~~~~~~-~~~P~gi~vd~dG-~l~va~~--~~~ 233 (306)
T 2p4o_A 164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP----GEPEIFVE-QTNIDDFAFDVEG-NLYGATH--IYN 233 (306)
T ss_dssp TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB----CCCEEEEE-SCCCSSEEEBTTC-CEEEECB--TTC
T ss_pred ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC----CccEEEec-cCCCCCeEECCCC-CEEEEeC--CCC
Confidence 111245566 78887665554 567899999875 311 11111111 1234678899988 5666542 468
Q ss_pred eEEEEECCCCceeE--EEcCC-CCeEEEEEc---CCCCeEEEEE
Q psy4876 492 HIYFWNVSSGACLD--SIDTK-SQVCALLWN---SDYKELVSAH 529 (609)
Q Consensus 492 ~I~iwd~~t~~~~~--~~~~~-~~v~sl~~s---~~g~~l~~~s 529 (609)
.|.++|.. ++... .+... ....+++|. ++++.|+++.
T Consensus 234 ~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 234 SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred eEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEEC
Confidence 89999975 66533 33333 578999998 8888888765
No 275
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.29 E-value=0.00024 Score=78.61 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=129.4
Q ss_pred CEEEEEe------CCCeEEEEeCCCCeeEEEecCCCCc-------------------------------------e-EEE
Q psy4876 348 YMLGVGT------SLGTVQLWDVSAKKKCRTMDGHDVR-------------------------------------V-GAL 383 (609)
Q Consensus 348 ~~Lasgs------~dg~I~iwd~~~~~~~~~l~~h~~~-------------------------------------V-~~l 383 (609)
..|++++ .+|.|+.+|..+|+.+-.+...... + ..+
T Consensus 167 g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~ 246 (599)
T 1w6s_A 167 DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWY 246 (599)
T ss_dssp TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCC
T ss_pred CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccce
Confidence 3555555 3799999999999988766532211 0 012
Q ss_pred Ee--cCCEEEEEecC----------------CeEEEEEcCCCCeeEEEEccCC----------CCeEEEEEc-cCC---C
Q psy4876 384 AW--NTYILSSGSRC----------------GNIVHHDVRSRDHKVALLQNHT----------QEVCGLKWS-PDG---R 431 (609)
Q Consensus 384 ~~--~~~~L~sgs~d----------------g~I~iwd~~~~~~~~~~~~~h~----------~~V~~l~~s-pdg---~ 431 (609)
++ ...+++.+..+ +.|..+|.++++ .+..++... ..+. +... .+| .
T Consensus 247 a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~-~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~ 324 (599)
T 1w6s_A 247 AYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGE-AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK 324 (599)
T ss_dssp EEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred eEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCc-eeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence 33 34566766654 479999999985 555544321 1221 2232 467 4
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecC-------------CcccE--------------------------EEE
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR-------------HQAAV--------------------------KAI 472 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------------h~~~V--------------------------~~l 472 (609)
.++.++.+|.++++|.++++. +..... ...++ ..+
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~------lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~ 398 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGAL------VSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHD 398 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCE------EEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBC
T ss_pred EEEEECCCcEEEEEECCCCCE------eecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCc
Confidence 677888999999999999843 222210 00011 134
Q ss_pred EEcCCCCcEEEEE----------------------e--------cc------CCCeEEEEECCCCceeEEEcCCCCeEEE
Q psy4876 473 AWCPWSPNVLASG----------------------G--------GT------ADRHIYFWNVSSGACLDSIDTKSQVCAL 516 (609)
Q Consensus 473 ~~sp~~~~llasg----------------------g--------Gs------~Dg~I~iwd~~t~~~~~~~~~~~~v~sl 516 (609)
+++|+...+++.. + .. .++.|.-||+.+|+.+-..........-
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g 478 (599)
T 1w6s_A 399 SYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG 478 (599)
T ss_dssp EEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB
T ss_pred cCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc
Confidence 5666554333311 0 01 3588999999999988877544332222
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCC-EEEEEEeCCCC-EEEEE
Q psy4876 517 LWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSAR-VLNLAMSPDET-TVLSA 572 (609)
Q Consensus 517 ~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~-~L~s~ 572 (609)
.....+..+++ +..|+.|+.||..+++.+..++..... ..-+.+..+|+ +|++.
T Consensus 479 ~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 479 TMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEE
Confidence 23335666666 558999999999999999888643321 12345566776 44443
No 276
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.0004 Score=73.81 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=139.2
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEEec-CC----eEEEEEcCCC
Q psy4876 336 ENVCSVAWIQ-EGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSGSR-CG----NIVHHDVRSR 407 (609)
Q Consensus 336 ~~V~~v~~sp-dg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sgs~-dg----~I~iwd~~~~ 407 (609)
.....|+|+| ++..|+++...+.|+.+|+..+....... .......|+|+ ++.|+.+.. ++ .+.+++....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3567899998 45566666655889999998766544433 55667888884 675555543 22 3444443322
Q ss_pred CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEe
Q psy4876 408 DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGG 486 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasgg 486 (609)
......+.. .....+++++| +|.++++-..++.|+.++...+.. ..+.... .......|+|+|++..++++.
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~----~~~~~~~-~~~~P~gia~~pdG~~lyv~d- 288 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQET----TPLFTIQ-DSGWEFHIQFHPSGNYAYIVV- 288 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEE----EEEEECS-SSSCCEEEEECTTSSEEEEEE-
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE----EEEEEcC-CCCcceeEEEcCCCCEEEEEE-
Confidence 111122221 23457789999 777666666778999999886511 0122221 223467899999997677765
Q ss_pred ccCCCeEEEEECCC--Cce--eEEEcCC----------------CCeE-EEEEc--------CCCCeEEEEEecCCCeEE
Q psy4876 487 GTADRHIYFWNVSS--GAC--LDSIDTK----------------SQVC-ALLWN--------SDYKELVSAHGFAQNQLI 537 (609)
Q Consensus 487 Gs~Dg~I~iwd~~t--~~~--~~~~~~~----------------~~v~-sl~~s--------~~g~~l~~~sG~~dg~I~ 537 (609)
...+.|..++... +.. +..+... .... .++.. ++|..+++ -...+.|+
T Consensus 289 -~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~ 365 (430)
T 3tc9_A 289 -VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIR 365 (430)
T ss_dssp -TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEE
T ss_pred -CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEE
Confidence 3688999987653 221 1122110 1123 45543 23443333 44578899
Q ss_pred EEECCCCceEEEEeCC------------------CCCEEEEEEeCC-CCEEEEEECCCCEEEEEcC
Q psy4876 538 IWKYPSLVKVAELHGH------------------SARVLNLAMSPD-ETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 538 Iwd~~~~~~~~~l~~h------------------~~~V~~l~~spd-g~~L~s~s~Dg~I~iWdl~ 584 (609)
.++ +++... .+.+. -.....|+++++ +.++++-...+.|+.++++
T Consensus 366 ~i~-~~G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 456433 33221 125789999995 5555555556778887764
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=0.00013 Score=83.37 Aligned_cols=236 Identities=12% Similarity=0.023 Sum_probs=129.7
Q ss_pred eEEEEEec-CCC-eEEEEcC--C----eEEEEeCCCCCCCceEEecCCcccccccccccccc-ceeeeeeecCCCCeEEE
Q psy4876 271 YLNLIDWS-HFN-VLAVALG--G----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR-AIDHLMDLEGNENVCSV 341 (609)
Q Consensus 271 ~v~~l~ws-p~~-lla~s~d--g----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~h~~~V~~v 341 (609)
.+....|| ||| .||.+.+ | .|+++|+.+ + .... ..+. .....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~-------------------------g~~~l~-~~~~--~~~~~~ 226 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISD-------------------------PSQTIA-DKVS--GTNGEI 226 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTC-------------------------TTCCCC-CCEE--EECSCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCC-------------------------CCEeCC-cccc--CceeeE
Confidence 67889999 997 5653332 2 499999988 4 3100 0111 123468
Q ss_pred EEccCCCEEEEEeCC-----CeEEEEeCCCCee--EEEec-CCCCceEEEEe--cCCEEEEEec---CCeEEEEEcCCCC
Q psy4876 342 AWIQEGYMLGVGTSL-----GTVQLWDVSAKKK--CRTMD-GHDVRVGALAW--NTYILSSGSR---CGNIVHHDVRSRD 408 (609)
Q Consensus 342 ~~spdg~~Lasgs~d-----g~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~--~~~~L~sgs~---dg~I~iwd~~~~~ 408 (609)
+|+|||+.|+....+ ..|.++++.++.. ...+. .+......+.| ++++|+..+. ...|.++|+.++.
T Consensus 227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~ 306 (751)
T 2xe4_A 227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGN 306 (751)
T ss_dssp EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCT
T ss_pred EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCC
Confidence 999999888877665 3688888877642 23332 23344566778 5777766553 3468888988652
Q ss_pred eeE--EEE-ccCCCCeEEEEEccCCCEEEEEeC-C----CcEEEEeCCCCCCCCCccceEe-ecCCcc--cEEEEEEcCC
Q psy4876 409 HKV--ALL-QNHTQEVCGLKWSPDGRYLASGGN-D----NLLNIWSGVPGQHTFSTQPIHS-LSRHQA--AVKAIAWCPW 477 (609)
Q Consensus 409 ~~~--~~~-~~h~~~V~~l~~spdg~~lasgs~-D----g~I~iwd~~~~~~~~~~~~~~~-~~~h~~--~V~~l~~sp~ 477 (609)
... ..+ ........++.|+. |..|+..++ + ..|..+|+.++. . ... +..+.. .+..+.+.
T Consensus 307 ~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~-----~-~~~~li~~~~~~~l~~~~~~-- 377 (751)
T 2xe4_A 307 AHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPS-----D-WSHVLVDHSEDVFMESIAVR-- 377 (751)
T ss_dssp TCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTT-----C-CCCEEECCCSSEEEEEEEEC--
T ss_pred CCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcc-----c-ceeeEECCCCCcEEEEEEEE--
Confidence 122 333 23344555566554 555544443 3 267777776421 1 111 222333 34555554
Q ss_pred CCcEEEEEeccCCCe--EEEEEC-------CCCceeEEEcCCCC--eEEEEE----cCCCCeEEEEEecC--CCeEEEEE
Q psy4876 478 SPNVLASGGGTADRH--IYFWNV-------SSGACLDSIDTKSQ--VCALLW----NSDYKELVSAHGFA--QNQLIIWK 540 (609)
Q Consensus 478 ~~~llasggGs~Dg~--I~iwd~-------~t~~~~~~~~~~~~--v~sl~~----s~~g~~l~~~sG~~--dg~I~Iwd 540 (609)
+..++++.. .++. |.++|+ .+++.+..+..... +..+.+ +.++..++....+. -..+..+|
T Consensus 378 ~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 455 (751)
T 2xe4_A 378 SNYLVVAGR--RAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS 455 (751)
T ss_dssp SSEEEEEEE--ETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred CCEEEEEEE--eCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 556776653 5664 666675 34431444443332 334433 34666554432222 24677778
Q ss_pred CCCCc
Q psy4876 541 YPSLV 545 (609)
Q Consensus 541 ~~~~~ 545 (609)
+.+++
T Consensus 456 ~~~~~ 460 (751)
T 2xe4_A 456 PQDHS 460 (751)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 77665
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.25 E-value=0.00098 Score=67.70 Aligned_cols=230 Identities=12% Similarity=0.017 Sum_probs=143.0
Q ss_pred EEEEEeCCCeEEEEeCCCCe-eEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKK-KCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGL 424 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 424 (609)
+|+.+. ...|+.+++.... ....+......+..++|+ +.++++-...+.|..+++.........+...-....++
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 444443 3679999987653 111121122356688885 45556666678899999876532222222233456789
Q ss_pred EEccCCC-EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCce
Q psy4876 425 KWSPDGR-YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGAC 503 (609)
Q Consensus 425 ~~spdg~-~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~ 503 (609)
++.+.+. ++++-...+.|.++++... .....+.........++++|.+..++.+..+ ..+.|..+++.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~ 157 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSR 157 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSC
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCC------cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCe
Confidence 9997444 4455455678999998754 2222222344567899999987777776521 357899998864332
Q ss_pred eEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 504 LDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 504 ~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
...+.. -.....+++++++..|+.+- ...+.|..+|+........+.+.......+++.. +.++++-...+.|..++
T Consensus 158 ~~~~~~~l~~Pnglavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~ 235 (318)
T 3sov_A 158 FIIINSEIYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACN 235 (318)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCccEEEEeccCCEEEEEE-CCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEE
Confidence 222222 24678999999888888763 4678999999864433333333445567888753 34445555567888888
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
..++..
T Consensus 236 ~~~G~~ 241 (318)
T 3sov_A 236 KYTGEG 241 (318)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 866654
No 279
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.24 E-value=0.0011 Score=64.94 Aligned_cols=197 Identities=11% Similarity=0.119 Sum_probs=130.7
Q ss_pred CCCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCCeeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCCe-
Q psy4876 335 NENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRDH- 409 (609)
Q Consensus 335 ~~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~~- 409 (609)
...+..++|+|++. ++++...++.|...|.. ++.++.+.- .......|++ ++.++++.-.++.+.++++.....
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i 104 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV 104 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence 45799999999875 55557778899999998 788777642 2356778888 345555555678899998876542
Q ss_pred -eEEEEc------cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-------cCCcccEEEEEEc
Q psy4876 410 -KVALLQ------NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-------SRHQAAVKAIAWC 475 (609)
Q Consensus 410 -~~~~~~------~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~l~~s 475 (609)
.+.... .......+|+|+|+++.|.++.+.....||.+. +-. ....+..+ ..+...+.+++++
T Consensus 105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~--~~~~l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLL--SSNELHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STT--CSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccc--cCCceeeecchhhccccccCCceeEEEc
Confidence 122221 134456899999998777776665444444443 100 00111111 1123457899999
Q ss_pred CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC----------CCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 476 PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK----------SQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 476 p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~----------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
|....+++.. ...+.|.++|.. |+.+..+... .+...|+|.++|+..++ + +.+.+++|.-
T Consensus 182 p~tg~lliLS--~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-s--E~n~~y~f~~ 251 (255)
T 3qqz_A 182 QQKNTLLVLS--HESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-S--EPNRFYRFTP 251 (255)
T ss_dssp TTTTEEEEEE--TTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-E--TTTEEEEEEC
T ss_pred CCCCeEEEEE--CCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-c--CCceEEEEEe
Confidence 9888888876 378999999966 5666665432 37899999999985554 3 5677777654
No 280
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.22 E-value=0.0083 Score=62.38 Aligned_cols=236 Identities=10% Similarity=0.111 Sum_probs=169.3
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC
Q psy4876 340 SVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT 418 (609)
Q Consensus 340 ~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 418 (609)
+.-.+|..+.||.=. ...++|+|+++...+..+.-.. .|.--.| +.+.|+..+. ..|+.|++.....++..+..|.
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecch
Confidence 455678888887765 5789999999998888877544 5555666 7888877764 5799999986556777776653
Q ss_pred ----CCeEEEEEccCCCEEEEEeC-------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCC--CcEEEEE
Q psy4876 419 ----QEVCGLKWSPDGRYLASGGN-------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWS--PNVLASG 485 (609)
Q Consensus 419 ----~~V~~l~~spdg~~lasgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~llasg 485 (609)
..|.....+++.+|++..|- .|.+.+|..+.. .-+.+.+|.+....+....+. ..+++.+
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa 219 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFA 219 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCSSEEEEEEEE
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCCCCceEEEEE
Confidence 56778888999999876542 367899998864 556778887776555543221 2355544
Q ss_pred e-ccCCCeEEEEECCCC---ce---eEEEc-------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 486 G-GTADRHIYFWNVSSG---AC---LDSID-------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 486 g-Gs~Dg~I~iwd~~t~---~~---~~~~~-------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
. ....++++|-++... .. .+..+ ...-..++..++.+..++..+ .-|.|++||+.++.++..-+
T Consensus 220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviT--K~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEe--cCceEEEEecccceeeeeec
Confidence 2 112478999998543 11 11111 123567889999999998876 79999999999999998887
Q ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 552 GHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 552 ~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
-..+.|...+-+....=++.....|.|.--.+.+..
T Consensus 298 Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 298 ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred ccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 777888777777666667777788888777776654
No 281
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.21 E-value=0.0027 Score=72.41 Aligned_cols=232 Identities=9% Similarity=-0.032 Sum_probs=144.0
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEE-EeCCCeE
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGV-GTSLGTV 359 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Las-gs~dg~I 359 (609)
.+|..+....|+..++.. .....+.. ....+..|+|.+.+..|+. -...+.|
T Consensus 396 p~Ll~an~~~Ir~i~l~~-------------------------~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I 448 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDR-------------------------SEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMI 448 (791)
T ss_dssp CEEEEECBSSEEEECTTS-------------------------CCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccccccceeEeeccC-------------------------Ccceeeec--CCCceEEEeecccCCeeEEeeccceeE
Confidence 355566666777777765 33333322 3467889999986655554 4456789
Q ss_pred EEEeCCCC----eeEEEecCCCCceEEEEec--C-CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCE
Q psy4876 360 QLWDVSAK----KKCRTMDGHDVRVGALAWN--T-YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRY 432 (609)
Q Consensus 360 ~iwd~~~~----~~~~~l~~h~~~V~~l~~~--~-~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 432 (609)
+.+++... .....+.........|+++ + +++++-...+.|.+.++.... ....+...-....+|++.|.+.+
T Consensus 449 ~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~ 527 (791)
T 3m0c_C 449 CSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGF 527 (791)
T ss_dssp EEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTE
T ss_pred EEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCC
Confidence 99988752 2333444333445556653 4 566666677899999998653 33333334456889999997666
Q ss_pred EEEEeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC
Q psy4876 433 LASGGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK 510 (609)
Q Consensus 433 lasgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~ 510 (609)
|+.... .+.|.+.++... .....+.........|++++.+..|+++- .....|..+|+........+...
T Consensus 528 LYwtD~g~~~~I~~~~~dG~------~~~~lv~~~l~~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~ 599 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGV------DIYSLVTENIQWPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDE 599 (791)
T ss_dssp EEEEECSSSCEEEEEETTSC------CEEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECT
T ss_pred EEEecCCCCCeEEEEecCCC------ceEEEEeCCCCCceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCC
Confidence 666553 267888888754 22222333345678999998887777775 35789999999755444443332
Q ss_pred ---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe
Q psy4876 511 ---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH 551 (609)
Q Consensus 511 ---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~ 551 (609)
....+|++. +..|+.+ ....+.|...+..+++.+..+.
T Consensus 600 ~~l~~P~glav~--~~~lYwt-D~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 600 KRLAHPFSLAVF--EDKVFWT-DIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTTSSEEEEEEE--TTEEEEE-ETTTTEEEEEETTTCCCCEEEE
T ss_pred CccCCCCEEEEe--CCEEEEE-ECCCCEEEEEeCCCCcceEEee
Confidence 245566663 4456554 3467888888877776655553
No 282
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.21 E-value=0.00014 Score=83.21 Aligned_cols=240 Identities=10% Similarity=0.062 Sum_probs=133.0
Q ss_pred CeEEEEEc-cCCCEEEEEeC-CC----eEEEEeCCCC-eeEE-EecCCCCceEEEEe--cCCEEEEEecC-----CeEEE
Q psy4876 337 NVCSVAWI-QEGYMLGVGTS-LG----TVQLWDVSAK-KKCR-TMDGHDVRVGALAW--NTYILSSGSRC-----GNIVH 401 (609)
Q Consensus 337 ~V~~v~~s-pdg~~Lasgs~-dg----~I~iwd~~~~-~~~~-~l~~h~~~V~~l~~--~~~~L~sgs~d-----g~I~i 401 (609)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+. .....+.| +++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57889999 99998886644 22 5999999988 6321 111 11345778 56666666554 36888
Q ss_pred EEcCCCCee-EEEEc-cCCCCeEEEEEccCCCEEEEEeC---CCcEEEEeCCCCCCCCCccc-eEeec-CCcccEEEEEE
Q psy4876 402 HDVRSRDHK-VALLQ-NHTQEVCGLKWSPDGRYLASGGN---DNLLNIWSGVPGQHTFSTQP-IHSLS-RHQAAVKAIAW 474 (609)
Q Consensus 402 wd~~~~~~~-~~~~~-~h~~~V~~l~~spdg~~lasgs~---Dg~I~iwd~~~~~~~~~~~~-~~~~~-~h~~~V~~l~~ 474 (609)
+++.+.... ...+. .......++.|+|||++|+..+. ...|+++|+.++.. .. +..+. ........+.|
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~ 327 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQM 327 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEE
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEee
Confidence 888775321 22322 23345678899999999887663 34688999886521 12 12332 23345556665
Q ss_pred cCCCCcEEEEEec--cCCCeEEEEECCCC-ceeE-EEcCCC--CeEEEEEcCCCCeEEEEEecCCCe--EEEEEC-----
Q psy4876 475 CPWSPNVLASGGG--TADRHIYFWNVSSG-ACLD-SIDTKS--QVCALLWNSDYKELVSAHGFAQNQ--LIIWKY----- 541 (609)
Q Consensus 475 sp~~~~llasggG--s~Dg~I~iwd~~t~-~~~~-~~~~~~--~v~sl~~s~~g~~l~~~sG~~dg~--I~Iwd~----- 541 (609)
+. +..+++.... .....|..+|+.++ .... .+.... .+..+.+ .+..|+... ..++. |.++++
T Consensus 328 ~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~-~~~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 328 HG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAG-RRAGLTRIWTMMADSQDG 403 (751)
T ss_dssp ET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEE-EETTEEEEEEEECCTTTS
T ss_pred ee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEE-EeCCEEEEEEEecccccc
Confidence 54 5556655421 12347888888753 3222 333333 3444554 455665543 35664 556665
Q ss_pred --CCCceEEEEeCC-CCCEEEEEE----eCCCC-EEEEEECC---CCEEEEEcCCCc
Q psy4876 542 --PSLVKVAELHGH-SARVLNLAM----SPDET-TVLSAGAD---ETLRLWKIFEKV 587 (609)
Q Consensus 542 --~~~~~~~~l~~h-~~~V~~l~~----spdg~-~L~s~s~D---g~I~iWdl~~~~ 587 (609)
..+..+..+... ...+..+.+ ++++. ++++.+.. ..|..+|+.+++
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 333313333211 122334433 34554 44554443 356667766544
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.19 E-value=0.0035 Score=65.74 Aligned_cols=230 Identities=10% Similarity=-0.050 Sum_probs=146.0
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCCCe
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQEV 421 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V 421 (609)
.+|+.+.. ..|+..++........+. ....+..|+|+ +.++++-...+.|..+++.... .....+.......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 45555544 689999998765444443 45678889995 3445555567889999887521 1233333344567
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC
Q psy4876 422 CGLKWSPD-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 422 ~~l~~spd-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t 500 (609)
.+|++.+. ++++++-...+.|.+.++... .....+.........|+++|.+..|+.+-.| ..+.|...++..
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~------~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG 234 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG 234 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTC------SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTS
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCC------ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCC
Confidence 89999984 444555556788999998754 2222233334457899999987778777532 347899999875
Q ss_pred CceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCC
Q psy4876 501 GACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADET 577 (609)
Q Consensus 501 ~~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~ 577 (609)
......+... .....|++++++..|+.+- ...+.|..+|+........+.. .......|++. .+.++++....+.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~~~lY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~ 312 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEA 312 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCS
T ss_pred CccEEEEECCCCceEEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCe
Confidence 4433333333 5789999999988888864 3678999999865443333332 23445677773 3344555556688
Q ss_pred EEEEEcCCCcc
Q psy4876 578 LRLWKIFEKVK 588 (609)
Q Consensus 578 I~iWdl~~~~~ 588 (609)
|..++..++..
T Consensus 313 V~~~~~~~G~~ 323 (400)
T 3p5b_L 313 IFSANRLTGSD 323 (400)
T ss_dssp EEEEESSSCCC
T ss_pred EEEEEcCCCCc
Confidence 88888665543
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.18 E-value=0.0011 Score=70.40 Aligned_cols=236 Identities=9% Similarity=0.019 Sum_probs=140.1
Q ss_pred CeEEEEEccC--CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe--cCCEEEEEecC---C-eEEEEEcCCCC
Q psy4876 337 NVCSVAWIQE--GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW--NTYILSSGSRC---G-NIVHHDVRSRD 408 (609)
Q Consensus 337 ~V~~v~~spd--g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~d---g-~I~iwd~~~~~ 408 (609)
....|+|+|+ +..|+++...+.|+.+|..++..... .........+++ +++++++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999985 44555565548899999987765544 335556788888 46744443311 1 23333332221
Q ss_pred eeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 409 HKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 409 ~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.....+. .......++++| +|.++++-..++.|+.+|..++... ..+.... ....-..++|+|++..|+++-
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~---~~~~~~~-~~~~~~~ia~dpdG~~LYvad-- 291 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT---EEEVMMD-TKGSNFHIVWHPTGDWAYIIY-- 291 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE---EEEEECS-CCSSCEEEEECTTSSEEEEEE--
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE---EEEeccC-CCCCcccEEEeCCCCEEEEEe--
Confidence 1111222 234456789999 7776666656788999998866210 0111111 122234799999997677775
Q ss_pred cCCCeEEEEECC--CCce--eEEEcC----------------CCCeEEEEE---------cCCCCeEEEEEecCCCeEEE
Q psy4876 488 TADRHIYFWNVS--SGAC--LDSIDT----------------KSQVCALLW---------NSDYKELVSAHGFAQNQLII 538 (609)
Q Consensus 488 s~Dg~I~iwd~~--t~~~--~~~~~~----------------~~~v~sl~~---------s~~g~~l~~~sG~~dg~I~I 538 (609)
...+.|+.+++. ++.. ...+.. -.....+++ ..+|..+++ ....+.|+.
T Consensus 292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~ 369 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRV 369 (433)
T ss_dssp TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEE
T ss_pred CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEE
Confidence 367899998865 3322 112111 123667898 566655554 446788999
Q ss_pred EECCCCceEEEEeCC------------------CCCEEEEEEe-CCCCEEEEEECCCCEEEEEcC
Q psy4876 539 WKYPSLVKVAELHGH------------------SARVLNLAMS-PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 539 wd~~~~~~~~~l~~h------------------~~~V~~l~~s-pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
++. ++. +..+.+. -.....|+++ ++|.++++-...+.|+.++++
T Consensus 370 ~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 370 LTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp ECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred ECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 984 553 3333322 1236789999 566666665667788888764
No 285
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.18 E-value=0.0049 Score=68.59 Aligned_cols=233 Identities=8% Similarity=-0.056 Sum_probs=148.3
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEE-eCCCe
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVG-TSLGT 358 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasg-s~dg~ 358 (609)
..+|..+..+.|+..++.+ .....+..+..-..+..|+|++.+..|+.+ ..++.
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~-------------------------~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~ 60 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLET-------------------------NNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKT 60 (628)
T ss_dssp CCEEEEEETTEEEEEESSC-------------------------TTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEeCCcEEEEECCC-------------------------CCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCe
Confidence 3456667888899999876 333333333333568899999977666554 45788
Q ss_pred EEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEE
Q psy4876 359 VQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLAS 435 (609)
Q Consensus 359 I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~las 435 (609)
|..+++........+.........|+++ ++++++-...+.|.+.++.... ....+...-....+|++.|...+|+.
T Consensus 61 I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~ 139 (628)
T 4a0p_A 61 ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYW 139 (628)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEE
T ss_pred EEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEE
Confidence 9999987654444444333345556553 4555666667889999987653 22223234456789999996556655
Q ss_pred EeC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCe
Q psy4876 436 GGN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV 513 (609)
Q Consensus 436 gs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v 513 (609)
... .+.|...++.... ...+...-.....|++++++..|+.+- ...+.|..+|+...............
T Consensus 140 tD~g~~~~I~r~~~dG~~-------~~~l~~~~~~P~GlalD~~~~~LY~aD--~~~~~I~~~d~dG~~~~v~~~~l~~P 210 (628)
T 4a0p_A 140 TEWGGKPKIDRAAMDGSE-------RTTLVPNVGRANGLTIDYAKRRLYWTD--LDTNLIESSNMLGLNREVIADDLPHP 210 (628)
T ss_dssp EECSSSCEEEEEETTSCS-------CEEEECSCSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECCSCE
T ss_pred eCCCCCCEEEEEeCCCCc-------eEEEECCCCCcceEEEccccCEEEEEE--CCCCEEEEEcCCCCceEEeeccCCCc
Confidence 542 4678888887541 222223445678999999887787775 36789999999754432222233456
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAEL 550 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l 550 (609)
..+++.. ..++.+ ....+.|...|..+++....+
T Consensus 211 ~glav~~--~~ly~t-D~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 211 FGLTQYQ--DYIYWT-DWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEET--TEEEEE-ETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEEC--CEEEEe-cCCCCEEEEEECCCCCceEEE
Confidence 6777765 355544 346788999987766544444
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.09 E-value=0.0045 Score=60.53 Aligned_cols=203 Identities=12% Similarity=0.163 Sum_probs=130.9
Q ss_pred EEecCCCCceEEEEec--CC-EEEEEecCCeEEEEEcCCCCeeEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEe
Q psy4876 371 RTMDGHDVRVGALAWN--TY-ILSSGSRCGNIVHHDVRSRDHKVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWS 446 (609)
Q Consensus 371 ~~l~~h~~~V~~l~~~--~~-~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd 446 (609)
+.+.+-...+..++|+ ++ ++++...++.|...|.. + ..+..+. .-....-+|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C-CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3556666789999996 34 55567788899999998 4 3555543 2235688999999988767666678899998
Q ss_pred CCCCCCCCCccceEee------cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEEC-CCCceeEEEc--------CCC
Q psy4876 447 GVPGQHTFSTQPIHSL------SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNV-SSGACLDSID--------TKS 511 (609)
Q Consensus 447 ~~~~~~~~~~~~~~~~------~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~-~t~~~~~~~~--------~~~ 511 (609)
+...... ..+... .........|+|+|.+..++++.. ..-..|+.|+- .....+..+. .-.
T Consensus 98 v~~~~~i---~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E-~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 98 LTPNSEV---KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE-KNPIEVYKVNGLLSSNELHISKDKALQRQFTLD 173 (255)
T ss_dssp ECTTCCE---EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE-SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSS
T ss_pred cCCCCee---eeeeeeccccccccccCCcceEEEeCCCCEEEEEEC-cCCceEEEEcccccCCceeeecchhhccccccC
Confidence 8765210 111111 123455789999999888887763 12225666661 1111222221 113
Q ss_pred CeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCC---------CCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 512 QVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHS---------ARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 512 ~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
.+.+++++|....+++.+. ....|.++|.. ++.+..+.-.. ..-..|+|.++|++. .+++.+.++.+.
T Consensus 174 d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ly-IvsE~n~~y~f~ 250 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSH-ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIY-IVSEPNRFYRFT 250 (255)
T ss_dssp CCCEEEEETTTTEEEEEET-TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEE-EEETTTEEEEEE
T ss_pred CceeEEEcCCCCeEEEEEC-CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEE-EEcCCceEEEEE
Confidence 6789999999888877753 77889999965 55555443221 256899999999844 446766544443
No 287
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.99 E-value=0.00036 Score=78.35 Aligned_cols=254 Identities=14% Similarity=0.091 Sum_probs=139.3
Q ss_pred cceeeeeeecCCCCeEEEEEcc-CCCEEEEEeCCC-----------eEEEEeCCCCee--EEEec-CCCCceEEEEe--c
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQ-EGYMLGVGTSLG-----------TVQLWDVSAKKK--CRTMD-GHDVRVGALAW--N 386 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~sp-dg~~Lasgs~dg-----------~I~iwd~~~~~~--~~~l~-~h~~~V~~l~~--~ 386 (609)
+....+..+.. .-.++++.+ +|+.++.|+.+. .+.+||..+++. +..+. .+.....++++ +
T Consensus 176 ~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~ 253 (656)
T 1k3i_A 176 GRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN 253 (656)
T ss_dssp CEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT
T ss_pred CeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC
Confidence 44444444432 223567777 888888887543 588999987652 33332 23333333443 7
Q ss_pred CCEEEEEec-CCeEEEEEcCCCCeeEEEEccC-CCCeEEEEEccCCCEEEEEe-CC-----CcEEEEeCCCCCCCCCc--
Q psy4876 387 TYILSSGSR-CGNIVHHDVRSRDHKVALLQNH-TQEVCGLKWSPDGRYLASGG-ND-----NLLNIWSGVPGQHTFST-- 456 (609)
Q Consensus 387 ~~~L~sgs~-dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~lasgs-~D-----g~I~iwd~~~~~~~~~~-- 456 (609)
+.+++.|+. +..+.+||..+.. -...-..+ ...-.+++..++|++++.|+ .+ ..+.+||..+..-....
T Consensus 254 g~lyv~GG~~~~~v~~yd~~t~~-W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~ 332 (656)
T 1k3i_A 254 GQIVVTGGNDAKKTSLYDSSSDS-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 332 (656)
T ss_dssp SCEEEECSSSTTCEEEEEGGGTE-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTS
T ss_pred CCEEEeCCCCCCceEEecCcCCc-eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCc
Confidence 899999884 4589999998753 11111111 12223556677999999998 34 56999999865210000
Q ss_pred --cceEeecCCcccEEEEEEcCCCCcEEEEEecc-------CCCeEEEEECCCCceeEEEcCC----------CCeEEEE
Q psy4876 457 --QPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT-------ADRHIYFWNVSSGACLDSIDTK----------SQVCALL 517 (609)
Q Consensus 457 --~~~~~~~~h~~~V~~l~~sp~~~~llasggGs-------~Dg~I~iwd~~t~~~~~~~~~~----------~~v~sl~ 517 (609)
.++..- .+. ..+..++ .+++.|+.. ....+..||..+.......... ..-.++.
T Consensus 333 ~~~p~~~~-~~~-----~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 333 KVNPMLTA-DKQ-----GLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp CSGGGCCC-CTT-----GGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred cccccccc-ccc-----ceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 000000 000 0111222 444444310 2356788998877644332211 1234555
Q ss_pred EcCCCCeEEEEEecCC-------C---eEEEEECCCCceEEEE--eCCCCCE-EEEEEeCCCCEEEEEECC---------
Q psy4876 518 WNSDYKELVSAHGFAQ-------N---QLIIWKYPSLVKVAEL--HGHSARV-LNLAMSPDETTVLSAGAD--------- 575 (609)
Q Consensus 518 ~s~~g~~l~~~sG~~d-------g---~I~Iwd~~~~~~~~~l--~~h~~~V-~~l~~spdg~~L~s~s~D--------- 575 (609)
|...+..|+++.|... . .|.+||..+..-.... ..+..+. .+++..|+|++++.||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 5554445555444211 1 6788887765543332 2233333 345667899999999865
Q ss_pred --CCEEEEEcCCCc
Q psy4876 576 --ETLRLWKIFEKV 587 (609)
Q Consensus 576 --g~I~iWdl~~~~ 587 (609)
..+.+||..+..
T Consensus 486 ~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 486 PVFTPEIYVPEQDT 499 (656)
T ss_dssp BCCCCEEEEGGGTE
T ss_pred cccceEEEcCCCCc
Confidence 468899986644
No 288
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0048 Score=66.13 Aligned_cols=246 Identities=10% Similarity=0.045 Sum_probs=143.1
Q ss_pred CeEEEEEcc-CCCEEEEEeC-CCeEEEEeCCCCeeEEEecCC---CCceEEEEe-------c--CCEEEEEecCC-----
Q psy4876 337 NVCSVAWIQ-EGYMLGVGTS-LGTVQLWDVSAKKKCRTMDGH---DVRVGALAW-------N--TYILSSGSRCG----- 397 (609)
Q Consensus 337 ~V~~v~~sp-dg~~Lasgs~-dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~-------~--~~~L~sgs~dg----- 397 (609)
....|+|+| ++..|+++.. .+.|++.|+.++.....+... ......|+| + +..|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 567899998 3544554444 467999999887766555432 235788999 4 66566665543
Q ss_pred --eEEEEEcCCCCeeE-----EEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCC-------CCCCCCC-------
Q psy4876 398 --NIVHHDVRSRDHKV-----ALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGV-------PGQHTFS------- 455 (609)
Q Consensus 398 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~-------~~~~~~~------- 455 (609)
.|.+++........ ..+... ....+++++| ++.++++-..++.|+.+|+. ++.....
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26666533311110 122211 2345788999 45555566677889999987 4532000
Q ss_pred -ccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC--CCce--eEEEcCC----------------CCeE
Q psy4876 456 -TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS--SGAC--LDSIDTK----------------SQVC 514 (609)
Q Consensus 456 -~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~--t~~~--~~~~~~~----------------~~v~ 514 (609)
...+... ........|+|+|++..++++- +....|+.++.. ++.. ...+... ....
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD--~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~ 375 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGV--INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPC 375 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEE
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEe--CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCe
Confidence 0112222 2234457999999997666665 467889986543 3322 0122110 1234
Q ss_pred -EEEEc-------CCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC------------------------CCCEEEEEE
Q psy4876 515 -ALLWN-------SDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH------------------------SARVLNLAM 562 (609)
Q Consensus 515 -sl~~s-------~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h------------------------~~~V~~l~~ 562 (609)
.++.. .++.++++ -...+.|+.++ +++. +.++.+. -.....|++
T Consensus 376 ~gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 376 QGVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred EEEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 44444 34444443 44688999998 5664 4444321 123678999
Q ss_pred eCC-CCEEEEEECCCCEEEEEcCCCccch
Q psy4876 563 SPD-ETTVLSAGADETLRLWKIFEKVKSK 590 (609)
Q Consensus 563 spd-g~~L~s~s~Dg~I~iWdl~~~~~~~ 590 (609)
+++ |.++++=.....||.+++.......
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 997 6666666667899999998766543
No 289
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.94 E-value=0.0038 Score=66.16 Aligned_cols=233 Identities=8% Similarity=0.049 Sum_probs=129.6
Q ss_pred EEEEecCC--C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 273 NLIDWSHF--N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 273 ~~l~wsp~--~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..|+|+|. + ++++...+.|+.+|... +.+..+.. .......|+|+++|++
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~-------------------------~~v~~~~~--~~~~P~~ia~d~~G~~ 192 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEK-------------------------EYVSTVYS--GLSKVRTICWTHEADS 192 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTT-------------------------TEEEEEEC--CCSCEEEEEECTTSSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCC-------------------------CEEEEEec--CCCCcceEEEeCCCCE
Confidence 45888872 4 55555558888898876 44444332 4466889999999996
Q ss_pred EEEEeCC-C----eEEEEeCCCCeeE--EEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCC
Q psy4876 350 LGVGTSL-G----TVQLWDVSAKKKC--RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQ 419 (609)
Q Consensus 350 Lasgs~d-g----~I~iwd~~~~~~~--~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 419 (609)
|+++... + .+.+++. .+... ..+.. ......++++ +.++++-..++.|..++................
T Consensus 193 lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~ 270 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILTR-ESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSG 270 (430)
T ss_dssp EEEEECCSCTTSEEEEEEEG-GGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEEeCCCCcccceEEEEeC-CCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 6666542 1 2443443 22221 22221 2233455563 566666667789999999865321111112224
Q ss_pred CeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEeecCC---------------cccEE-EEEEcC------
Q psy4876 420 EVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSLSRH---------------QAAVK-AIAWCP------ 476 (609)
Q Consensus 420 ~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---------------~~~V~-~l~~sp------ 476 (609)
....|+|+|+|++|+.+ ...+.|..++........ ..+..+.+. -.... .++..+
T Consensus 271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRL--TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccc--cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 57789999999955444 456789998765321000 001111110 11122 455532
Q ss_pred --CCCcEEEEEeccCCCeEEEEECCCCceeEEEcC---------C---------CCeEEEEEcCCCCeEEEEEecCCCeE
Q psy4876 477 --WSPNVLASGGGTADRHIYFWNVSSGACLDSIDT---------K---------SQVCALLWNSDYKELVSAHGFAQNQL 536 (609)
Q Consensus 477 --~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~---------~---------~~v~sl~~s~~g~~l~~~sG~~dg~I 536 (609)
++ .|+++- ...+.|+.++ .+|........ . .....+++++++..|+++ ....+.|
T Consensus 349 D~~g-~lyvaD--~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rI 423 (430)
T 3tc9_A 349 SDEY-DFYFCD--RENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRI 423 (430)
T ss_dssp SCCE-EEEEEE--GGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEE
T ss_pred CCCC-eEEEEE--CCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeE
Confidence 23 455554 2467888888 45544333221 1 147889999865555554 3356677
Q ss_pred EEEEC
Q psy4876 537 IIWKY 541 (609)
Q Consensus 537 ~Iwd~ 541 (609)
+.++.
T Consensus 424 r~i~~ 428 (430)
T 3tc9_A 424 RKIGY 428 (430)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 77664
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.88 E-value=0.012 Score=66.99 Aligned_cols=228 Identities=11% Similarity=-0.039 Sum_probs=142.8
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCC---eeEEEEccCCCCeE
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRD---HKVALLQNHTQEVC 422 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 422 (609)
+|+.+.. ..|+..++........+. ....+..|+|+ +.++++-...+.|+.+++.... .....+........
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4544443 568888887665544444 45667788885 3455565667889999887531 12333333445677
Q ss_pred EEEEccCCCEEE-EEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCC
Q psy4876 423 GLKWSPDGRYLA-SGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSG 501 (609)
Q Consensus 423 ~l~~spdg~~la-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~ 501 (609)
+|++.+.+..|+ +-...+.|.+.++... .....+.........|+++|.+..|+.+-.| ..+.|.+.++...
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~------~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV 547 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCC------eEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCC
Confidence 899998775554 4445688999998754 2222222334557899999987778877532 2378999998754
Q ss_pred ceeEEEcCC-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCC--CCCEEEEEEeCCCCEEEEEE-CCCC
Q psy4876 502 ACLDSIDTK-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGH--SARVLNLAMSPDETTVLSAG-ADET 577 (609)
Q Consensus 502 ~~~~~~~~~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~L~s~s-~Dg~ 577 (609)
.....+... .....|++++.+..|+.+- ...+.|..+++........+... -.....|++. +..|+.+. ..+.
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD-~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEA 624 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred ceEEEEeCCCCCceEEEEecCCCeEEEEe-CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCE
Confidence 443333333 4789999999888888864 35778999998655444444332 2344566664 34555554 4567
Q ss_pred EEEEEcCCCcc
Q psy4876 578 LRLWKIFEKVK 588 (609)
Q Consensus 578 I~iWdl~~~~~ 588 (609)
|...+..++..
T Consensus 625 I~~~dk~tG~~ 635 (791)
T 3m0c_C 625 IFSANRLTGSD 635 (791)
T ss_dssp EEEEETTTCCC
T ss_pred EEEEeCCCCcc
Confidence 77777665543
No 291
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.86 E-value=0.0057 Score=64.85 Aligned_cols=234 Identities=6% Similarity=-0.040 Sum_probs=127.1
Q ss_pred EEEEEecCC---C-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCC
Q psy4876 272 LNLIDWSHF---N-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEG 347 (609)
Q Consensus 272 v~~l~wsp~---~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg 347 (609)
...|+|+++ + ++.+...+.|+.++..+ +.+..+.. ......+|+|+++|
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-------------------------g~v~~~~~--~~~~P~giavd~dG 193 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-------------------------QYVDIKTT--NIGQCADVNFTLNG 193 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTT-------------------------TEEEEECC--CCSCEEEEEECTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCC-------------------------CEEEEeec--CCCCccEEEECCCC
Confidence 345889983 5 44444448899999876 55444332 34568999999999
Q ss_pred CEEEEEeCCC-----eEEEEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEc-cC
Q psy4876 348 YMLGVGTSLG-----TVQLWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQ-NH 417 (609)
Q Consensus 348 ~~Lasgs~dg-----~I~iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-~h 417 (609)
+ |+++...+ .+...+...+.. ...+. .-.....++++ +.++++-..++.|+.+|..++......+. +.
T Consensus 194 ~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 194 D-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp C-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred C-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 9 55554322 233333322111 01111 12233445553 45555655678899999876532122222 12
Q ss_pred CCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC---------------CcccEEEEEE-------
Q psy4876 418 TQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR---------------HQAAVKAIAW------- 474 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------------h~~~V~~l~~------- 474 (609)
...-..|+|+|+|++|..+. ..+.|+.++........ .....+.+ .-.....+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~ 349 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL--AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA 349 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB--CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc--CcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence 22335799999999555544 56789998865321000 00111111 1123567888
Q ss_pred --cCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC------------------CCCeEEEEEcCCCCeEEEEEecCCC
Q psy4876 475 --CPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT------------------KSQVCALLWNSDYKELVSAHGFAQN 534 (609)
Q Consensus 475 --sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~------------------~~~v~sl~~s~~g~~l~~~sG~~dg 534 (609)
.+++ .|+++- ...+.|+.++. +|........ -.....|++++....|+++ -...+
T Consensus 350 ~dd~~g-~lyvaD--~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~ 424 (433)
T 4hw6_A 350 GEEDEY-DFYFCD--RDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG-DCDNH 424 (433)
T ss_dssp TSSCCE-EEEEEE--TTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGT
T ss_pred ccCCCC-cEEEEE--CCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE-eCCCC
Confidence 5554 566654 35788999985 5543322211 0136788888443344443 33566
Q ss_pred eEEEEEC
Q psy4876 535 QLIIWKY 541 (609)
Q Consensus 535 ~I~Iwd~ 541 (609)
.|+.++.
T Consensus 425 rIr~i~~ 431 (433)
T 4hw6_A 425 RVRKIAP 431 (433)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 7777664
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.86 E-value=0.022 Score=57.70 Aligned_cols=232 Identities=11% Similarity=0.089 Sum_probs=126.9
Q ss_pred ceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCC
Q psy4876 269 DYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEG 347 (609)
Q Consensus 269 ~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg 347 (609)
+..+..|.++++.+++++..+.|+.- ...+ .....+.... ..+.+..+.+.+++
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~S-~DgG------------------------~tW~~~~~~~~~~~~~~~i~~~~~~ 133 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLHT-TDGG------------------------QSWSQIPLDPKLPGSPRLIKALGNG 133 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEEE-SSTT------------------------SSCEECCCCTTCSSCEEEEEEEETT
T ss_pred CccEEEEEecCCeEEEEECCCeEEEE-CCCC------------------------CCceECccccCCCCCeEEEEEECCC
Confidence 34577888887667777777765542 2210 2223322211 23457788887777
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEE-EecCCCCceEEEEec--CCEEEEEecCCeEEE-EEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCR-TMDGHDVRVGALAWN--TYILSSGSRCGNIVH-HDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~~--~~~L~sgs~dg~I~i-wd~~~~~~~~~~~~~h~~~V~~ 423 (609)
..++++ .+|.|.. ..+.++.-. ....+...+..+.+. +.+++.+ .+|.|.. +|-. +..-...-......+..
T Consensus 134 ~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~ 209 (327)
T 2xbg_A 134 SAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHN 209 (327)
T ss_dssp EEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEE
T ss_pred CEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccce
Confidence 666655 4564422 122233322 223455678888883 4555544 4555544 3321 11111112345567889
Q ss_pred EEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
+.+.+++.++++ +.+|.+++++.+.+.. ...+..- ..+...+.++++.+++ .+++++ .++.| ++....|+
T Consensus 210 ~~~~~~g~~~~~-~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g---~~g~i-~~S~DgG~ 280 (327)
T 2xbg_A 210 MGFTPDGRLWMI-VNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRTPN-EVWLAG---GAGAL-LCSQDGGQ 280 (327)
T ss_dssp EEECTTSCEEEE-ETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESSSS-CEEEEE---STTCE-EEESSTTS
T ss_pred eEECCCCCEEEE-eCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecCCC-EEEEEe---CCCeE-EEeCCCCc
Confidence 999999876654 5678888775332310 0111110 0122358899998865 566665 36766 45555565
Q ss_pred eeEEEc----CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 503 CLDSID----TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 503 ~~~~~~----~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
.-..+. ....+..+.|..++..+++ | .+|.|.-++-
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~--G-~~G~i~~~~~ 320 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFIL--G-QKGILLRYVT 320 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEE--C-STTEEEEECC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEE--c-CCceEEEEcC
Confidence 544443 2356788888766554443 4 6787776653
No 293
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.85 E-value=5.3e-05 Score=85.74 Aligned_cols=216 Identities=9% Similarity=-0.014 Sum_probs=128.0
Q ss_pred CCeEEEEEccCCCEEEEEe-CCCeEEEEeCCC----CeeEEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCC
Q psy4876 336 ENVCSVAWIQEGYMLGVGT-SLGTVQLWDVSA----KKKCRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSR 407 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs-~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~ 407 (609)
..+..|+|.+.+..|+.+. ..+.|+.+++.. ......+.........|+++ +.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567899998776666654 457899999875 22222222112223445553 455555556788999998764
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEeC-C-CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGGN-D-NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
. ....+.........|+++|.+.+|+.+.. . +.|.++++.... ....+.........|+|+|++..|+++-
T Consensus 486 ~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~------~~~l~~~~l~~PnGlavd~~~~~LY~aD 558 (699)
T 1n7d_A 486 K-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD------IYSLVTENIQWPNGITLDLLSGRLYWVD 558 (699)
T ss_dssp C-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC------CCEESCSSCSSCCCEEECTTTCCEEEEE
T ss_pred c-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC------eeEEEeCCCCCccEEEEeccCCEEEEEe
Confidence 2 22223323345678999996555554432 2 678887776431 1111112233457899999888888876
Q ss_pred eccCCCeEEEEECCCCceeEEEcCC---CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEE
Q psy4876 486 GGTADRHIYFWNVSSGACLDSIDTK---SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAM 562 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~ 562 (609)
. ..+.|.++|+........+... .....|++..+ .|+.+ ....+.|..++..+++.+..+.......+.|++
T Consensus 559 ~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~--~lywt-d~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v 633 (699)
T 1n7d_A 559 S--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED--KVFWT-DIINEAIFSANRLTGSDVNLLAENLLSPEDMVL 633 (699)
T ss_dssp T--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT--EEEEE-CSTTTCEEEEETTTEEEEECCCTTCSSCCCCCB
T ss_pred c--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC--EEEEE-eCCCCeEEEEEccCCCceEEeecCCCCCcEEEE
Confidence 3 6789999998743333222211 23445666443 55554 346789999998888877766543333445544
Q ss_pred e
Q psy4876 563 S 563 (609)
Q Consensus 563 s 563 (609)
.
T Consensus 634 ~ 634 (699)
T 1n7d_A 634 F 634 (699)
T ss_dssp C
T ss_pred e
Confidence 3
No 294
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.84 E-value=0.0068 Score=62.32 Aligned_cols=228 Identities=13% Similarity=0.143 Sum_probs=125.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEec---CCCCceEEEEecCC-----EEEEEec-C-----CeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTMD---GHDVRVGALAWNTY-----ILSSGSR-C-----GNI 399 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l~---~h~~~V~~l~~~~~-----~L~sgs~-d-----g~I 399 (609)
.....|+|.|+|++++ +..+|.|.+++ +++. +..+. ........|+|++. .|+.+.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4577999999998554 56679999998 4432 22221 22456788999643 5555543 2 678
Q ss_pred EEEEcCCCC----ee-EEEEc---cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCCCC----
Q psy4876 400 VHHDVRSRD----HK-VALLQ---NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQHTF---- 454 (609)
Q Consensus 400 ~iwd~~~~~----~~-~~~~~---~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~~~---- 454 (609)
..++..... .. +..+. ........|+|.|||.+.++.+. .|.|.-++.... ...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~-~p~~npf 186 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE-PAPGNPF 186 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS-BCTTCTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC-CCCCCcc
Confidence 888876431 11 12232 11123468999999976666432 146666666531 000
Q ss_pred -----CccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCC-------eEEEEECCC----------------CceeEE
Q psy4876 455 -----STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADR-------HIYFWNVSS----------------GACLDS 506 (609)
Q Consensus 455 -----~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg-------~I~iwd~~t----------------~~~~~~ 506 (609)
....+.. .++. ....++|+|+...|+++-.| .+. .|.+..-.. ...+..
T Consensus 187 ~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 187 LGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred cCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 0011111 1232 35678999955567776542 222 243332111 012233
Q ss_pred EcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 507 IDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK------VAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 507 ~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
+..+.....++| .+|..+++ ....+.|...++..... ...+..-..++.++++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 333445677887 45554444 44667788777653321 222222346799999999998776654
No 295
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.82 E-value=0.031 Score=62.16 Aligned_cols=229 Identities=8% Similarity=-0.017 Sum_probs=147.5
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEec-CCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMD-GHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCG 423 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 423 (609)
.+|+.+ ....|+..++.+......+. ..-..+..|+|+ +.++++-..++.|..+++.... ....+........+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~-~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA-LEHVVEFGLDYPEG 84 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-cEEEEeCCCCCcce
Confidence 355555 44789999998765443333 223467788995 3455566677899999987643 23333323345778
Q ss_pred EEEccCCCEE-EEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc
Q psy4876 424 LKWSPDGRYL-ASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA 502 (609)
Q Consensus 424 l~~spdg~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~ 502 (609)
|++.+.+..| ++-...+.|.+.++... .....+...-....+|+++|....++.+--| ..+.|...++....
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~ 157 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQ------HRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSE 157 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTST------TCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCS
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCC------cEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCc
Confidence 9998765555 44445678999998754 1111222334456899999977677777522 35788888887555
Q ss_pred eeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEE
Q psy4876 503 CLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWK 582 (609)
Q Consensus 503 ~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWd 582 (609)
....+..-.....|++++++..|+.+- ...+.|..+++..... ..+.........|++.. +.++++-...+.|...|
T Consensus 158 ~~~l~~~~~~P~GlalD~~~~~LY~aD-~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d 234 (628)
T 4a0p_A 158 RTTLVPNVGRANGLTIDYAKRRLYWTD-LDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN 234 (628)
T ss_dssp CEEEECSCSSEEEEEEETTTTEEEEEE-TTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred eEEEECCCCCcceEEEccccCEEEEEE-CCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence 444444456789999999988888864 4678999999865443 33333344566888764 33444444568888888
Q ss_pred cCCCcc
Q psy4876 583 IFEKVK 588 (609)
Q Consensus 583 l~~~~~ 588 (609)
..++..
T Consensus 235 k~tg~~ 240 (628)
T 4a0p_A 235 KTSGQN 240 (628)
T ss_dssp TTTCCS
T ss_pred CCCCCc
Confidence 766543
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.007 Score=61.60 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=127.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe------cCC---EEEEEec---CCeEEEEEcCCCCeeEEEE
Q psy4876 347 GYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW------NTY---ILSSGSR---CGNIVHHDVRSRDHKVALL 414 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~------~~~---~L~sgs~---dg~I~iwd~~~~~~~~~~~ 414 (609)
..+++.....+-+.+||+ +|+.++.+.. +++..+.. .+. ++++..+ +.+|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 355655666788999999 7888888864 45555554 232 3344444 4789999774222234444
Q ss_pred cc------CC-CCeEEEEE--ccC-CC-EEEEEeCCCcEEEEeCCCC-CCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 415 QN------HT-QEVCGLKW--SPD-GR-YLASGGNDNLLNIWSGVPG-QHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 415 ~~------h~-~~V~~l~~--spd-g~-~lasgs~Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
.. .. ..+.++|+ ++. +. ++++...+|.+..|++... ......+.++++.. .+.+..+...+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 12 56777888 774 44 6788888999999998432 11122356677654 35688888888776666
Q ss_pred EEEeccCCCeEEEEECC-----CCceeEEEcCC---CCeEEEEE--cCCCC-eEEEEEecCCCeEEEEECC-CCceEEEE
Q psy4876 483 ASGGGTADRHIYFWNVS-----SGACLDSIDTK---SQVCALLW--NSDYK-ELVSAHGFAQNQLIIWKYP-SLVKVAEL 550 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~-----t~~~~~~~~~~---~~v~sl~~--s~~g~-~l~~~sG~~dg~I~Iwd~~-~~~~~~~l 550 (609)
+.- ++.-|..+|.+ +++.+..+... ..+..|++ .++++ +|++++ -.+++..|||.. +.+.+..+
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSs-QG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASS-QGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEE-GGGTEEEEEESSTTCCEEEEE
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEc-CCCCEEEEEECCCCCcEEEEE
Confidence 653 66667777755 34556555433 46788877 56666 666654 357899999996 67777777
Q ss_pred e
Q psy4876 551 H 551 (609)
Q Consensus 551 ~ 551 (609)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.80 E-value=0.013 Score=65.09 Aligned_cols=231 Identities=9% Similarity=0.005 Sum_probs=135.7
Q ss_pred eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe-CCCeEE
Q psy4876 282 VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT-SLGTVQ 360 (609)
Q Consensus 282 lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs-~dg~I~ 360 (609)
++.-+....|+..++.. ...........-..+..|+|++.+..|+.+. ..+.|.
T Consensus 11 ~~~~~~~~~I~~i~~~~-------------------------~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~ 65 (619)
T 3s94_A 11 LLLYANRRDLRLVDATN-------------------------GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIK 65 (619)
T ss_dssp CEEEECSSBEEEECCC----------------------------------CBCCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEeccccEEEEeCCC-------------------------CcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEE
Confidence 55556677888888865 2211111222345688999999777666654 457899
Q ss_pred EEeCCCCee-EEEecCCCCceEEEEec---CCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE
Q psy4876 361 LWDVSAKKK-CRTMDGHDVRVGALAWN---TYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG 436 (609)
Q Consensus 361 iwd~~~~~~-~~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg 436 (609)
.+++..... ...+...-.....|+++ ++++++-...+.|.+.++.... ....+...-....+|++.|.+.+|+..
T Consensus 66 r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~t 144 (619)
T 3s94_A 66 RTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWT 144 (619)
T ss_dssp EEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEE
T ss_pred EEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEe
Confidence 999875432 33344333556677774 4455565677899999998653 222332344567889999976666555
Q ss_pred eC--CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-CCCCe
Q psy4876 437 GN--DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-TKSQV 513 (609)
Q Consensus 437 s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~~~~v 513 (609)
.. .+.|...++... .........-.....|++++++..|+++- ...+.|..+|+.......... .....
T Consensus 145 D~g~~~~I~r~~~dG~------~~~~l~~~~~~~P~Glald~~~~~LY~aD--~~~~~I~~~~~dG~~~~~~~~~~~~~P 216 (619)
T 3s94_A 145 DWGEVPKIERAGMDGS------SRFIIINSEIYWPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSLPHP 216 (619)
T ss_dssp ECSSSCEEEEEETTSC------SCEEEECSSCSSEEEEEEETTTTEEEEEE--TTTCCEEEESSSCCEEC---------C
T ss_pred ccCCCCEEEEEECCCC------ceEEEEeCCCCCCcEEEEEccCCEEEEEe--CCCCeEEEecCCCCccEEEEeCCCCCc
Confidence 53 357777777643 22222222345678999999887787775 367889999987543322222 12234
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAE 549 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~ 549 (609)
..+++..+ .++.+ ....+.|...|..+++....
T Consensus 217 ~gi~~~~~--~ly~t-d~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 217 FALTLFED--ILYWT-DWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCEEESSS--EEEEE-CTTTCSEEEEESSSCCCCEE
T ss_pred eEEEEeCC--EEEEe-cCCCCEEEEEECCCCcccEE
Confidence 56677655 55544 44677888888876654433
No 298
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.0077 Score=61.32 Aligned_cols=183 Identities=10% Similarity=0.177 Sum_probs=119.0
Q ss_pred CEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccC----CC---EEEEEe-C--CCcEEEEeCCCCCCCCCcc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPD----GR---YLASGG-N--DNLLNIWSGVPGQHTFSTQ 457 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd----g~---~lasgs-~--Dg~I~iwd~~~~~~~~~~~ 457 (609)
.+++.....+.+.+||+ ++ ..+..+.. +.++.+..-|+ |+ ++++.. . ++.|.+|++.... .
T Consensus 41 s~ii~t~k~~gL~Vydl-~G-~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~-----~ 111 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DG-KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN-----G 111 (355)
T ss_dssp CEEEEEETTTEEEEEET-TS-CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT-----C
T ss_pred cEEEEEcCCCCEEEEcC-CC-cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC-----C
Confidence 45666677789999999 44 46666653 56777777663 22 223333 3 5789999774221 1
Q ss_pred ceEeecC-------CcccEEEEEE--cCCCCc--EEEEEeccCCCeEEEEECC-------CCceeEEEcCCCCeEEEEEc
Q psy4876 458 PIHSLSR-------HQAAVKAIAW--CPWSPN--VLASGGGTADRHIYFWNVS-------SGACLDSIDTKSQVCALLWN 519 (609)
Q Consensus 458 ~~~~~~~-------h~~~V~~l~~--sp~~~~--llasggGs~Dg~I~iwd~~-------t~~~~~~~~~~~~v~sl~~s 519 (609)
.+..+.. ....+..+|+ +|.+.. ++++. .++.+..|++. +++.++++...+++..|...
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvD 188 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAAD 188 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEc
Confidence 2333311 1144566777 775443 44443 67999999883 34667888888999999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECC-----CCceEEEEe-CC-CCCEEEEEE--eCCCC-EEEEEE-CCCCEEEEEcC
Q psy4876 520 SDYKELVSAHGFAQNQLIIWKYP-----SLVKVAELH-GH-SARVLNLAM--SPDET-TVLSAG-ADETLRLWKIF 584 (609)
Q Consensus 520 ~~g~~l~~~sG~~dg~I~Iwd~~-----~~~~~~~l~-~h-~~~V~~l~~--spdg~-~L~s~s-~Dg~I~iWdl~ 584 (609)
+....|++ +.++..|..|+.. +++.+..+. +| ...+..|++ .++++ +|++++ .++++.+||..
T Consensus 189 d~~g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 189 DEYGRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp TTTTEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCCeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 99999998 4466666666644 344554442 22 246888888 45666 666666 57899999996
No 299
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.64 E-value=0.045 Score=56.20 Aligned_cols=233 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCe-eEEEec---CCCCceEEEEecC-----CEEEEEec----C----C
Q psy4876 335 NENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKK-KCRTMD---GHDVRVGALAWNT-----YILSSGSR----C----G 397 (609)
Q Consensus 335 ~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~-~~~~l~---~h~~~V~~l~~~~-----~~L~sgs~----d----g 397 (609)
-.....|+|.|+|++ +++..+|.|.++|. +++ .+..+. ........|++++ ..|+.+.. + .
T Consensus 28 l~~P~~ia~~pdG~l-~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRY-LVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTEE-EEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCeE-EEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 356789999999974 45666799999973 444 222221 2235678899964 35555443 3 5
Q ss_pred eEEEEEcCCCC------eeE-EEEc-cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCC---C
Q psy4876 398 NIVHHDVRSRD------HKV-ALLQ-NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQH---T 453 (609)
Q Consensus 398 ~I~iwd~~~~~------~~~-~~~~-~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~---~ 453 (609)
.|..|+..... +.+ ..+. ........|+|.|||.++++.+. .|.|.-++....-. .
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 67788776431 111 1122 11123467999999987666432 24566666542100 0
Q ss_pred CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCC-CeEEEEECCC--------C--------ceeEEE-cCCCCeEE
Q psy4876 454 FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTAD-RHIYFWNVSS--------G--------ACLDSI-DTKSQVCA 515 (609)
Q Consensus 454 ~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~D-g~I~iwd~~t--------~--------~~~~~~-~~~~~v~s 515 (609)
.....+.. .++.. ...++|+|+...|+++-.|... ..|.+..-.. + ..+..+ ..+.....
T Consensus 186 f~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G 263 (354)
T 3a9g_A 186 FPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSG 263 (354)
T ss_dssp STTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEE
T ss_pred CCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcc
Confidence 00011211 23333 4689999955567776542111 1233322100 0 122333 23456788
Q ss_pred EEEc-------CCCCeEEEEEecCCCeEEEEECCCC-ceE--EEEe-CCCCCEEEEEEeCCCCEEEEEE
Q psy4876 516 LLWN-------SDYKELVSAHGFAQNQLIIWKYPSL-VKV--AELH-GHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 516 l~~s-------~~g~~l~~~sG~~dg~I~Iwd~~~~-~~~--~~l~-~h~~~V~~l~~spdg~~L~s~s 573 (609)
++|. .+|.++++ ....+.|..+++... ... ..+. +-..++.++++.|||.++++..
T Consensus 264 ~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 264 ASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred eEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 8884 45655554 456788888888753 222 2332 2346799999999998666654
No 300
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.59 E-value=0.19 Score=59.79 Aligned_cols=249 Identities=7% Similarity=-0.023 Sum_probs=140.1
Q ss_pred ceeeeeeecCCCCeEEEEEccC------CCEEEEEeC-CCeEEEEeCCCCeeEEEecC-CCCceEEEEe---c-CCEEEE
Q psy4876 325 AIDHLMDLEGNENVCSVAWIQE------GYMLGVGTS-LGTVQLWDVSAKKKCRTMDG-HDVRVGALAW---N-TYILSS 392 (609)
Q Consensus 325 ~~~~l~~~~h~~~V~~v~~spd------g~~Lasgs~-dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~---~-~~~L~s 392 (609)
.+......+-...|.|+++.+. +.++|+|.. |++|+|+++.+.+.+....- ......++.. . ..+|..
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~i 622 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLC 622 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEE
Confidence 3334433344678999999863 379999997 99999999987665543221 1223444444 3 357889
Q ss_pred EecCCeEEEEEcCC--CCee-EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccE
Q psy4876 393 GSRCGNIVHHDVRS--RDHK-VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAV 469 (609)
Q Consensus 393 gs~dg~I~iwd~~~--~~~~-~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 469 (609)
|-.||.+..+.++. +... .+...-...++.=..+...|..-+.+..+.-..+|--. + .....-.....--
T Consensus 623 gl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~------~l~~s~l~~~~v~ 695 (1158)
T 3ei3_A 623 ALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-H------KLVFSNVNLKEVN 695 (1158)
T ss_dssp EETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-S------SEEEEEBSSSCCC
T ss_pred EeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-C------ceEEeccChHHhc
Confidence 99999987666543 2211 11112223455444444444443333334555555433 2 1111111111111
Q ss_pred EEEEEcCCC--CcEEEEEeccCCCeEEEEECCCC--ceeEEEcCCCCeEEEEEcCCCCeEEEEEecC-------------
Q psy4876 470 KAIAWCPWS--PNVLASGGGTADRHIYFWNVSSG--ACLDSIDTKSQVCALLWNSDYKELVSAHGFA------------- 532 (609)
Q Consensus 470 ~~l~~sp~~--~~llasggGs~Dg~I~iwd~~t~--~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~------------- 532 (609)
....|+... ..++++ .++.++|..+..- -.+.++.....+..++++|..+.+++++...
T Consensus 696 ~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~ 771 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALR 771 (1158)
T ss_dssp EEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESS
T ss_pred eEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhh
Confidence 233453221 124433 3566888877532 3456667778899999999888766543210
Q ss_pred ----------------------------------CCeEEEEECCCCceEEEEeC-CCCCEEEEEE---eCC-CCEEEEEE
Q psy4876 533 ----------------------------------QNQLIIWKYPSLVKVAELHG-HSARVLNLAM---SPD-ETTVLSAG 573 (609)
Q Consensus 533 ----------------------------------dg~I~Iwd~~~~~~~~~l~~-h~~~V~~l~~---spd-g~~L~s~s 573 (609)
.+.|+++|..+++.+..+.- ....+.+++. ..+ ..+|+.|+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGT 851 (1158)
T 3ei3_A 772 PSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGT 851 (1158)
T ss_dssp CCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEE
T ss_pred hhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEe
Confidence 13477888878877665543 2344555553 222 46888776
Q ss_pred ----------CCCCEEEEEcC
Q psy4876 574 ----------ADETLRLWKIF 584 (609)
Q Consensus 574 ----------~Dg~I~iWdl~ 584 (609)
..|.|.+|++.
T Consensus 852 a~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 852 AMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp EECCTTCSSCCCEEEEEEEEE
T ss_pred eecCCCCCCCCceEEEEEEEE
Confidence 24789999987
No 301
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.56 E-value=0.019 Score=63.69 Aligned_cols=224 Identities=13% Similarity=0.019 Sum_probs=130.6
Q ss_pred CCeEEEEeCCCCe-eEEEecCCCCceEEEEec--CCEEE-EEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 356 LGTVQLWDVSAKK-KCRTMDGHDVRVGALAWN--TYILS-SGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 356 dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~~--~~~L~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
...|++.++.... ....+...-.....++|+ +..|+ +-...+.|..+++.........+...-....+|++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4678888887643 222233344557788884 34444 4445678988888764222233333335788999999655
Q ss_pred EEE-EEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEc-C
Q psy4876 432 YLA-SGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSID-T 509 (609)
Q Consensus 432 ~la-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~-~ 509 (609)
.|+ +-...+.|.+.++... .....+........+|+++|.+..++.+.-| ..+.|...++.......... .
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp EEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSS
T ss_pred EEEEEeCCCCEEEEEECCCC------CEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCC
Confidence 554 4455789999998754 2212222334456789999987778877532 34678888876433333332 3
Q ss_pred CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 510 KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 510 ~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
-.....|++++++..|+.+- ...+.|..+++........+.+.......|++..+ .++++-...+.|...|..++..
T Consensus 170 ~~~P~Glald~~~~~LY~aD-~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEE-TTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred CCCCcEEEEEccCCEEEEEe-CCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 34789999999988888874 35778999998654333222222222346677555 3334444567888888876654
No 302
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.56 E-value=0.064 Score=54.95 Aligned_cols=242 Identities=10% Similarity=0.096 Sum_probs=129.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEe-------cCCCCceEEEEecC-----CEEEEEe-c-------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTM-------DGHDVRVGALAWNT-----YILSSGS-R------- 395 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l-------~~h~~~V~~l~~~~-----~~L~sgs-~------- 395 (609)
.....|+|.|+|++|+++...|.|++++.. +.....+ .........|++++ ..|+... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999844556678999999853 3321111 11234567889853 3444332 2
Q ss_pred CCeEEEEEcCCCC----eeEEEEcc------CCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCCC
Q psy4876 396 CGNIVHHDVRSRD----HKVALLQN------HTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQH 452 (609)
Q Consensus 396 dg~I~iwd~~~~~----~~~~~~~~------h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~~ 452 (609)
...|..|++.... .....+.. .......|+|.|||.+.++.+. .|.|.-++....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2357677665331 11111111 1122467999999965555433 24677777653200
Q ss_pred ---CC-----CccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc----------------------
Q psy4876 453 ---TF-----STQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA---------------------- 502 (609)
Q Consensus 453 ---~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~---------------------- 502 (609)
.+ ....+.. .++ .....++|+|....|+++-.| .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 00 0011111 133 335789999954467766432 22111222221111
Q ss_pred ---------eeEEEcCCCCeEEEEEcC-------CCCeEEEEEecCCCeEEEEECCCCceEEE--E-eCCCCCEEEEEEe
Q psy4876 503 ---------CLDSIDTKSQVCALLWNS-------DYKELVSAHGFAQNQLIIWKYPSLVKVAE--L-HGHSARVLNLAMS 563 (609)
Q Consensus 503 ---------~~~~~~~~~~v~sl~~s~-------~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~--l-~~h~~~V~~l~~s 563 (609)
.+..+..+..+..+.|.. ++.++++ ....+.|...++..+..+.. + .....++.+|++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 122333445677788864 3555554 45678888888776543332 2 1223589999999
Q ss_pred CCCCEEEEEECCCCEEEEEcC
Q psy4876 564 PDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 564 pdg~~L~s~s~Dg~I~iWdl~ 584 (609)
|||.++++.. +..=+||.+.
T Consensus 332 pdG~lyv~td-~~~g~I~ri~ 351 (353)
T 2g8s_A 332 PDGYLYVLTD-ESSGELLKVS 351 (353)
T ss_dssp TTSCEEEEEC-STTEEEEEEE
T ss_pred CCCcEEEEEe-CCCCEEEEEe
Confidence 9998665433 2333566653
No 303
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.46 E-value=0.0077 Score=59.93 Aligned_cols=227 Identities=12% Similarity=0.094 Sum_probs=115.4
Q ss_pred CCEEEEEe-CC-----CeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC-----CeEEEEEcCCCC----e
Q psy4876 347 GYMLGVGT-SL-----GTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC-----GNIVHHDVRSRD----H 409 (609)
Q Consensus 347 g~~Lasgs-~d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d-----g~I~iwd~~~~~----~ 409 (609)
+..++.|+ .+ ..+.+||..+.+-.. .+.........+..++.+++.|+.+ ..+.+||+.+.. .
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~ 94 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY 94 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE
T ss_pred CEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE
Confidence 34555555 22 368899988765332 1222222334455578888888865 358899988753 1
Q ss_pred eEEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 410 KVALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 410 ~~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
.+..+.........+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++.
T Consensus 95 ~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~ 165 (301)
T 2vpj_A 95 SVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVA---SGVIYCL 165 (301)
T ss_dssp EECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEE---TTEEEEE
T ss_pred ECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEE---CCEEEEE
Confidence 12111111111222222 67777777654 3688999876521 222222211122222233 3457777
Q ss_pred EeccC---CCeEEEEECCCCceeEEEcCCC---CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEE--EeC
Q psy4876 485 GGGTA---DRHIYFWNVSSGACLDSIDTKS---QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVAE--LHG 552 (609)
Q Consensus 485 ggGs~---Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~~--l~~ 552 (609)
||... -..+.+||+.+.+-...-.... ....+.+ ++ .|++..|.. .+.+.+||..+.+-... +..
T Consensus 166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 65211 2568999998765433211111 1122222 33 444443432 35689999877643222 211
Q ss_pred CCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 553 HSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.......+. -++++++.|+.+ ..|.+||+.+..
T Consensus 243 ~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 243 PRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred cccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111122222 267777777765 356778876643
No 304
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.46 E-value=0.007 Score=71.62 Aligned_cols=232 Identities=8% Similarity=0.063 Sum_probs=145.5
Q ss_pred EEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCeeEEEEccC--
Q psy4876 341 VAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHKVALLQNH-- 417 (609)
Q Consensus 341 v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h-- 417 (609)
.-.+|..+.||.=. ...++|+|+++...+..+.-. ..|.--.| +.+.|+..+. ..|+.|++.....++..+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEcC-CeEEEeccCCCCccHHHHhcchh
Confidence 44567777777654 578999999988777776643 45655666 7777776654 579999997644555555545
Q ss_pred --CCCeEEEEEccCCCEEEEEe-------CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc--CCCCcEEEEEe
Q psy4876 418 --TQEVCGLKWSPDGRYLASGG-------NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC--PWSPNVLASGG 486 (609)
Q Consensus 418 --~~~V~~l~~spdg~~lasgs-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~llasgg 486 (609)
...|..-..+++.+|++..| -.|.+.+|..+.+ ..+.+.+|.+....+... +....+++.+.
T Consensus 148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~ 220 (1630)
T 1xi4_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCFAV 220 (1630)
T ss_pred cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEEEE
Confidence 45677888899999987654 2478889988764 334566776665444443 22234554432
Q ss_pred c-cCCCeEEEEECCCC---ceeE---E---E-c---CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC
Q psy4876 487 G-TADRHIYFWNVSSG---ACLD---S---I-D---TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG 552 (609)
Q Consensus 487 G-s~Dg~I~iwd~~t~---~~~~---~---~-~---~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~ 552 (609)
- ...++++|-++... .... . + . ...-..++..++....++..+ .-|.|++||+.++.++..-+-
T Consensus 221 ~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~it--k~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 221 RGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLIT--KYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred ecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEe--cCceEEEEecccchhhhhccc
Confidence 1 12378999988543 1110 0 1 1 122456778888888888766 789999999999988765444
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
....|...+-+....-++.....|.|.--.+.
T Consensus 299 s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 299 SGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (1630)
T ss_pred cCCceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence 44444444443332233333455555444443
No 305
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.45 E-value=0.042 Score=56.32 Aligned_cols=221 Identities=13% Similarity=0.161 Sum_probs=121.0
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec----CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE----GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----h~~~V~~v~~spd 346 (609)
-..|+|.|++ ++.+..++.|++++ . +....+..+. .......|+|+|+
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~-------------------------g~~~~~~~~~v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--E-------------------------GRLSTYAELSVYHRGESGLLGLALHPR 85 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--T-------------------------TEEEEEEECCCCCSTTCSEEEEEECTT
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--C-------------------------CCccEeecceEeecCCCCceeEEECCC
Confidence 3569999987 66677789999998 3 2222222221 3457889999998
Q ss_pred ---CCEEEEEeCC------CeEEEEeCCCCe------eEEEec---CCCCceEEEEe--cCCEEEEEec-----------
Q psy4876 347 ---GYMLGVGTSL------GTVQLWDVSAKK------KCRTMD---GHDVRVGALAW--NTYILSSGSR----------- 395 (609)
Q Consensus 347 ---g~~Lasgs~d------g~I~iwd~~~~~------~~~~l~---~h~~~V~~l~~--~~~~L~sgs~----------- 395 (609)
+..|+++... +.|..|+...+. .+..+. +.......|+| ++.++++.+.
T Consensus 86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~ 165 (352)
T 2ism_A 86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLA 165 (352)
T ss_dssp TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTT
T ss_pred CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCC
Confidence 5555555432 578888876431 122233 11122356778 5666555432
Q ss_pred --CCeEEEEEcCCC-------------CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCc--------EEEEeCCCCC
Q psy4876 396 --CGNIVHHDVRSR-------------DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNL--------LNIWSGVPGQ 451 (609)
Q Consensus 396 --dg~I~iwd~~~~-------------~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~--------I~iwd~~~~~ 451 (609)
.|.|..++.+.. ...+ ...+| .....++|+| +|.++++-...+. |.+. ..+.
T Consensus 166 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~ 241 (352)
T 2ism_A 166 SLGGKILRLTPEGEPAPGNPFLGRRGARPEV-YSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGG 241 (352)
T ss_dssp CSSSEEEEECTTSSBCTTCTTTTCTTSCTTE-EEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTC
T ss_pred CCceEEEEEcCCCCCCCCCcccCCCCCCccE-EEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCC
Confidence 256666665530 1111 12233 2366789999 6766555433232 4333 2222
Q ss_pred CC------------CCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc-------eeEEEcCCCC
Q psy4876 452 HT------------FSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA-------CLDSIDTKSQ 512 (609)
Q Consensus 452 ~~------------~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~-------~~~~~~~~~~ 512 (609)
.- ....++..+..| .....++| .++ .++++. ...+.|...++.... ....+.....
T Consensus 242 nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G-~l~v~~--~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~r 316 (352)
T 2ism_A 242 NYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRG-DLYVAG--LRGQALLRLVLEGERGRWRVLRVETALSGFGR 316 (352)
T ss_dssp BCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETT-EEEEEE--TTTTEEEEEEEEEETTEEEEEEEEEEEESSCC
T ss_pred cCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECC-EEEEEE--CCCCEEEEEEECCCCcceeecchheecccCCC
Confidence 00 001344444333 34567777 334 455554 356788888776432 1112233457
Q ss_pred eEEEEEcCCCCeEEEE
Q psy4876 513 VCALLWNSDYKELVSA 528 (609)
Q Consensus 513 v~sl~~s~~g~~l~~~ 528 (609)
+..+++.|+|..+++.
T Consensus 317 p~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 317 LREVQVGPDGALYVTT 332 (352)
T ss_dssp EEEEEECTTSCEEEEE
T ss_pred eeEEEECCCCcEEEEE
Confidence 8999999999766653
No 306
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.45 E-value=0.066 Score=53.66 Aligned_cols=195 Identities=12% Similarity=0.169 Sum_probs=124.8
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~ 348 (609)
|.--.|-.+..|+.-.+..||-|++... ....++.+.. ....|..-..+++.+
T Consensus 109 VvfWkWis~~~L~lVT~taVyHWs~~~~------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~k 164 (365)
T 2xzh_A 109 VTFWKWISLNTVALVTDNAVYHWSMEGE------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQK 164 (365)
T ss_dssp EEEEEECSSSEEEEEESSEEEEEESSTT------------------------CCCEEEEECCGGGTTCEEEEEEECTTSC
T ss_pred cEEEEecCCCeEEEEcCCcEEEEcccCC------------------------CCCceeeecchhcccceEEEEEECCCCC
Confidence 4446788888888888999999998752 2223333322 345677777788888
Q ss_pred EEEEEeC-------CCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEecC---CeEEEEEcCCC--C---
Q psy4876 349 MLGVGTS-------LGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSRC---GNIVHHDVRSR--D--- 408 (609)
Q Consensus 349 ~Lasgs~-------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~d---g~I~iwd~~~~--~--- 408 (609)
+++..+- .|.+++|..+. +.-+.+.+|.+....+..++ .+|+.+.+. +.+++-++... .
T Consensus 165 W~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~ 243 (365)
T 2xzh_A 165 WLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 243 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCC
T ss_pred EEEEEeEeccCCccceeEEEEeecc-cccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCC
Confidence 7765432 37899999876 55677888887776666643 244444432 58899888543 1
Q ss_pred ---eeEEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 409 ---HKVALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 409 ---~~~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
..+..+. .-.+-..++..++.-..+..-+.-|.|++||++++ .++..-+-....|..-+-+.....++
T Consensus 244 f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg------t~i~~nrIS~d~iF~ta~~~~~~Gi~ 317 (365)
T 2xzh_A 244 FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGII 317 (365)
T ss_dssp CCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEEGGGTEEE
T ss_pred cccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC------cEEEEeccCCCceEEecccCCCCcEE
Confidence 1111111 12344567888887788888899999999999999 66666555555555544444433455
Q ss_pred EEEeccCCCeEEEEECCC
Q psy4876 483 ASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t 500 (609)
+.. ..|.|.--.++.
T Consensus 318 ~Vn---r~GqVl~v~v~~ 332 (365)
T 2xzh_A 318 GVN---RKGQVLSVCVEE 332 (365)
T ss_dssp EEE---TTCEEEEEEECT
T ss_pred EEc---CCCEEEEEEECc
Confidence 443 455555444443
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.39 E-value=0.057 Score=54.46 Aligned_cols=155 Identities=9% Similarity=0.109 Sum_probs=104.4
Q ss_pred ceeEEEEEecCC-C-eEEEE-cCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC-------CCCe
Q psy4876 269 DYYLNLIDWSHF-N-VLAVA-LGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG-------NENV 338 (609)
Q Consensus 269 ~~~v~~l~wsp~-~-lla~s-~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h-------~~~V 338 (609)
..|-.+++|++. + ++.++ ..+.|..|+... +....+ .+.. ...+
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~-------------------------~~~~~~-~~~~~s~~g~~~~~~ 65 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKT-------------------------QSHFNV-VIDGASSNGDGEQQM 65 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTT-------------------------CCEEEE-CCTTTCCSSCCSEEE
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCC-------------------------CeEEEE-ecCCccccCCCccee
Confidence 446667999874 4 44444 489999999875 443333 3322 1246
Q ss_pred EEEEE---ccCCCEEEEEe-------------CCCeEEEEeCC---CCeeEEEec--CC-----------CCceEEEEe-
Q psy4876 339 CSVAW---IQEGYMLGVGT-------------SLGTVQLWDVS---AKKKCRTMD--GH-----------DVRVGALAW- 385 (609)
Q Consensus 339 ~~v~~---spdg~~Lasgs-------------~dg~I~iwd~~---~~~~~~~l~--~h-----------~~~V~~l~~- 385 (609)
..|.| .|+++++++.. .+..|..||+. +++.+.... .. ......++.
T Consensus 66 sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD 145 (334)
T 2p9w_A 66 SGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD 145 (334)
T ss_dssp EEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC
T ss_pred eEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC
Confidence 89999 68877777544 25779999998 777665443 11 124667777
Q ss_pred -cCCEEEEEecC-CeEEEEEcCCCCeeEEEEcc----CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 386 -NTYILSSGSRC-GNIVHHDVRSRDHKVALLQN----HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 386 -~~~~L~sgs~d-g~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
+|+..++++.. +.|...+..........+.. .....++|+++|+|..|++...+|.|..+|+..
T Consensus 146 ~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 146 RDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 47888888888 88877777653211111111 122367999999999988887799999999884
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.39 E-value=0.04 Score=54.77 Aligned_cols=217 Identities=11% Similarity=0.061 Sum_probs=113.7
Q ss_pred CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCC----CeEEEE
Q psy4876 288 GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSL----GTVQLW 362 (609)
Q Consensus 288 dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~d----g~I~iw 362 (609)
...+.+||..+ .....+..+. .......+. -++..++.|+.+ ..+.+|
T Consensus 23 ~~~~~~~d~~~-------------------------~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 23 PQSCRYFNPKD-------------------------YSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp TTSEEEEETTT-------------------------TEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEE
T ss_pred CceEEEecCCC-------------------------CCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEE
Confidence 35788999888 5555554444 222222333 356677777754 578999
Q ss_pred eCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC------CeEEEEEcCCCCeeEEEEcc---CCCCeEEEEEccCCC
Q psy4876 363 DVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC------GNIVHHDVRSRDHKVALLQN---HTQEVCGLKWSPDGR 431 (609)
Q Consensus 363 d~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~ 431 (609)
|..+.+-... +.........+..++.+++.|+.+ ..+.+||..+.. -..+.. .......+. -+++
T Consensus 76 d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~--~~~~ 151 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTES--WHTKPSMLTQRCSHGMVE--ANGL 151 (306)
T ss_dssp ETTTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE--ETTE
T ss_pred eCCCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCc--eEeCCCCcCCcceeEEEE--ECCE
Confidence 9988753332 222223334445578888888765 458899988753 112211 111111222 2666
Q ss_pred EEEEEeC---------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeEEEEECC
Q psy4876 432 YLASGGN---------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHIYFWNVS 499 (609)
Q Consensus 432 ~lasgs~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I~iwd~~ 499 (609)
+++.|+. -..+.+||+.+..- ..+..+.........+.+ +..+++.||... -..+.+||+.
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~ 224 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETW----TELCPMIEARKNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIK 224 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEETTEEBCCEEEEETT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeE----EECCCccchhhcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCC
Confidence 7777764 34588999887621 122112111111222233 346777775222 2468899998
Q ss_pred CCceeEEEcCC---CCeEEEEEcCCCCeEEEEEec----CCCeEEEEECCCCc
Q psy4876 500 SGACLDSIDTK---SQVCALLWNSDYKELVSAHGF----AQNQLIIWKYPSLV 545 (609)
Q Consensus 500 t~~~~~~~~~~---~~v~sl~~s~~g~~l~~~sG~----~dg~I~Iwd~~~~~ 545 (609)
+.+-...-... .....+.+ ++ .|++..|. ..+.+.+||..+.+
T Consensus 225 ~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 225 LNEWKMVSPMPWKGVTVKCAAV--GS-IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTEEEECCCCSCCBSCCEEEEE--TT-EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCcEEECCCCCCCccceeEEEE--CC-EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 76532221111 12222222 34 44444443 23568889987643
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.086 Score=56.42 Aligned_cols=243 Identities=9% Similarity=0.054 Sum_probs=132.6
Q ss_pred EEEEEecCC--C-eEEEEc-CCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEE--
Q psy4876 272 LNLIDWSHF--N-VLAVAL-GGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAW-- 343 (609)
Q Consensus 272 v~~l~wsp~--~-lla~s~-dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~-- 343 (609)
...|+++|. + |+++.. .+.|++.|.+. +.+..+.... .......++|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~-------------------------~~v~~l~~~~~~~~~~p~~ia~~~ 195 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKN-------------------------RMLSSPLNINTIPTNRIRSIAFNK 195 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTT-------------------------TEEEEEECCTTSSCSBEEEEEECC
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCC-------------------------CEEEEEEccCccccCCCcEEEEee
Confidence 455889983 3 444444 35788888877 5565554432 2245899999
Q ss_pred -----ccCCCEEEEEeCCC-------eEEEEeCCC-CeeE-----EEecCCCCceEEEEec---CCEEEEEecCCeEEEE
Q psy4876 344 -----IQEGYMLGVGTSLG-------TVQLWDVSA-KKKC-----RTMDGHDVRVGALAWN---TYILSSGSRCGNIVHH 402 (609)
Q Consensus 344 -----spdg~~Lasgs~dg-------~I~iwd~~~-~~~~-----~~l~~h~~~V~~l~~~---~~~L~sgs~dg~I~iw 402 (609)
+++|++|+++...+ .|.+++... +... ..+... .....++.+ +.++++-..++.|..+
T Consensus 196 ~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~ 274 (496)
T 3kya_A 196 KIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRL 274 (496)
T ss_dssp CBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred cccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEE
Confidence 99999777766554 266665433 1211 122111 122344553 4667677788899999
Q ss_pred EcC-------CCCe------e----E-EEE-ccCCCCeEEEEEccCCCEEEEE-eCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 403 DVR-------SRDH------K----V-ALL-QNHTQEVCGLKWSPDGRYLASG-GNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 403 d~~-------~~~~------~----~-~~~-~~h~~~V~~l~~spdg~~lasg-s~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
|+. ++.. . . ..+ .+.......|+|+|+|++|..+ ...+.|+.++........ .....+
T Consensus 275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~--~~~~~~ 352 (496)
T 3kya_A 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEF--ITPYNF 352 (496)
T ss_dssp CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE--CCCEEE
T ss_pred ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCccee--cccEEe
Confidence 987 4432 0 1 111 1223456799999999965444 456788886654321000 000111
Q ss_pred cCC---------------cccEE-EEEEc-------CCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC---------
Q psy4876 463 SRH---------------QAAVK-AIAWC-------PWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK--------- 510 (609)
Q Consensus 463 ~~h---------------~~~V~-~l~~s-------p~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~--------- 510 (609)
.+. -.... .++.. ..+ .|+++- +....|+.++ .+|. +.++...
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g-~lyVaD--~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEY-DFYFVD--RLNFCVRKVT-PEGI-VSTYAGRGASTSLADG 427 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCE-EEEEEE--GGGTEEEEEC-TTCB-EEEEEESCTTHHHHHS
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCC-eEEEEE--CCCCEEEEEe-CCCC-EEEEecccccccccCc
Confidence 110 01233 44443 333 566654 3578899998 4564 3333211
Q ss_pred ----------------CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q psy4876 511 ----------------SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVA 548 (609)
Q Consensus 511 ----------------~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~ 548 (609)
.....|+++++...|+++ -..++.|+.+++.....+.
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVa-D~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVH-DQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEE-ETTTTEEEEEEECCCC---
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEE-eCCCCEEEEEECCCCcccc
Confidence 135678888863333333 3456778877776554443
No 310
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.33 E-value=0.089 Score=54.77 Aligned_cols=192 Identities=13% Similarity=0.166 Sum_probs=126.0
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCCEEE
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~~La 351 (609)
-.|-.+..|+.-.+..||-|++... ....++.+.. ....|..-..+++.++++
T Consensus 111 WkWis~~~l~lVT~taVyHWsi~~~------------------------s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~ 166 (494)
T 1bpo_A 111 WKWISLNTVALVTDNAVYHWSMEGE------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQKWLL 166 (494)
T ss_dssp EEEEETTEEEEECSSEEEEEESSSS------------------------CCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred EEecCCCeEEEEcCCeeEEecccCC------------------------CCchhheecchhcccceEEEEEECCCCCeEE
Confidence 5677778888888999999999752 2223333322 356677777788888777
Q ss_pred EEe-------CCCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEecC---CeEEEEEcCCC--C------
Q psy4876 352 VGT-------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSRC---GNIVHHDVRSR--D------ 408 (609)
Q Consensus 352 sgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~d---g~I~iwd~~~~--~------ 408 (609)
..+ -.|.+.+|..+. +.-+.+.||.+....+..++ .+++.+.+. +.++|-++... +
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 543 237899999875 56778889988877777753 355555543 78999998643 1
Q ss_pred eeEEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 409 HKVALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 409 ~~~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
..+..+. .-.+-..++..++.-..+..-+.-|.|++||+.++ .++..-.-....|...+-+.....+++..
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg------t~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn 319 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGIIGVN 319 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEEETTTTEEEEEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc------eeeeeecccCCceEEecccCCCCcEEEEc
Confidence 1111111 12344567888988888888999999999999999 66666555555555555544444455443
Q ss_pred eccCCCeEEEEECCC
Q psy4876 486 GGTADRHIYFWNVSS 500 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t 500 (609)
..|.|.--.+..
T Consensus 320 ---r~GqVl~v~v~e 331 (494)
T 1bpo_A 320 ---RKGQVLSVCVEE 331 (494)
T ss_dssp ---TTCEEEEEEECT
T ss_pred ---cCceEEEEEEcc
Confidence 455555444443
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.31 E-value=0.02 Score=56.75 Aligned_cols=218 Identities=14% Similarity=0.155 Sum_probs=112.4
Q ss_pred CeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec-CCCCeEEEEEccCCCEEEEEeCC-----CeEEEE
Q psy4876 289 GSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE-GNENVCSVAWIQEGYMLGVGTSL-----GTVQLW 362 (609)
Q Consensus 289 g~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-h~~~V~~v~~spdg~~Lasgs~d-----g~I~iw 362 (609)
..+.+||..+ .....+..+. .......+. -++..++.|+.+ ..+.+|
T Consensus 31 ~~~~~~d~~~-------------------------~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 31 DVVEKYDPKT-------------------------QEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CCEEEEETTT-------------------------TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred eEEEEEcCCC-------------------------CeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEE
Confidence 4788899887 5555544443 222222222 356677777754 368999
Q ss_pred eCCCCe---e--EEEecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCe-eEEEEccCCCCeEEEEEccCCC
Q psy4876 363 DVSAKK---K--CRTMDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDH-KVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 363 d~~~~~---~--~~~l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~ 431 (609)
|..+.+ - +..+.........+..++.+++.|+.++ .+.+||+.+..- .+..+.........+. -+++
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~ 161 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGV 161 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTE
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCE
Confidence 988755 2 2222222233344455788888887543 588899877531 1222221111112222 2677
Q ss_pred EEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC---CCeEEEEECCCCce
Q psy4876 432 YLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---DRHIYFWNVSSGAC 503 (609)
Q Consensus 432 ~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---Dg~I~iwd~~t~~~ 503 (609)
+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++.||... ...+.+||+.+.+-
T Consensus 162 iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 162 IYCLGGYDGLNILNSVEKYDPHTGHW----TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred EEEECCCCCCcccceEEEEeCCCCcE----EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 77777754 4688999887521 112112111111223333 346777775221 35689999987754
Q ss_pred eEEEcCC--C-CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCc
Q psy4876 504 LDSIDTK--S-QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLV 545 (609)
Q Consensus 504 ~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~ 545 (609)
...-... . ....+.+ +++ |++..|... +.|.+||..+.+
T Consensus 235 ~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 235 TTVTSMTTPRCYVGATVL--RGR-LYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EECCCCCCcccceeEEEE--CCE-EEEEcCcCCCcccccEEEEcCCCCe
Confidence 3322111 1 1122222 444 444434322 457888876543
No 312
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.26 E-value=0.02 Score=57.04 Aligned_cols=226 Identities=8% Similarity=0.072 Sum_probs=115.0
Q ss_pred EEEEEeC--CCeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC----CeEEEEEcCCCCee-EEEEccCCC
Q psy4876 349 MLGVGTS--LGTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC----GNIVHHDVRSRDHK-VALLQNHTQ 419 (609)
Q Consensus 349 ~Lasgs~--dg~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d----g~I~iwd~~~~~~~-~~~~~~h~~ 419 (609)
+++.|+. ...+.+||..+++-.. .+.........+..++.+++.|+.+ ..+.+||..+..-. +..+.....
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4445554 3578999998765332 2222223334455678888888765 56888998876311 111111111
Q ss_pred CeEEEEEccCCCEEEEEeCC------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC----
Q psy4876 420 EVCGLKWSPDGRYLASGGND------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---- 489 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---- 489 (609)
....+. -++.+++.|+.+ ..+.+||..+..- ..+..+........++.+ +..+++.||...
T Consensus 94 ~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 94 SLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSHGMVEA---NGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEESCTTT
T ss_pred ceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCcceeEEEEE---CCEEEEECCCCCCCCc
Confidence 112222 267777888765 4689999887521 111111111111122222 336777765221
Q ss_pred ---CCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCce--EEEEeCCCCCEE
Q psy4876 490 ---DRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVK--VAELHGHSARVL 558 (609)
Q Consensus 490 ---Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~--~~~l~~h~~~V~ 558 (609)
-..+.+||+.+.+-...-.... .-.+++.. +++ |++..|... ..+.+||..+.+- +..+........
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 242 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVK 242 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCE
T ss_pred ccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCcccee
Confidence 3558899998775332211111 11122222 444 444434322 4688999876532 222211111222
Q ss_pred EEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 559 NLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 559 ~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.+.+ ++.+++.|+.+ ..|.+||+.+..
T Consensus 243 ~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 243 CAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 2333 67788888754 457888887644
No 313
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.25 E-value=0.084 Score=56.56 Aligned_cols=311 Identities=12% Similarity=0.079 Sum_probs=178.8
Q ss_pred cccccCCccCCceeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeee---eec-
Q psy4876 258 DRILDAPEIQNDYYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLM---DLE- 333 (609)
Q Consensus 258 ~~il~ap~~~~~~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~- 333 (609)
.+...+|+-.|+|| ++.++|..|.|+|+-+-+....+++-.|+++...-+.... .....+. .+.
T Consensus 58 ~k~~v~pG~~Deyy---------~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~---esk~il~~~~~~~~ 125 (638)
T 3sbq_A 58 QKIHVGPGELDDYY---------GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTN---ESRHIMGDSAKFLN 125 (638)
T ss_dssp CCCCCCTTCCCSEE---------EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBH---HHHHHHGGGGGCCC
T ss_pred cccccCCCCcccEE---------EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCch---hHHHHHhcCCCccC
Confidence 45566778888888 3466888999999999988888888888887665554321 0000010 111
Q ss_pred CCCCeEEEEEc---cCCCEEEEEe-CCCeEEEEeCCCCeeEEEecC-CCCceEEEEe----cCCEEEEEec-------CC
Q psy4876 334 GNENVCSVAWI---QEGYMLGVGT-SLGTVQLWDVSAKKKCRTMDG-HDVRVGALAW----NTYILSSGSR-------CG 397 (609)
Q Consensus 334 h~~~V~~v~~s---pdg~~Lasgs-~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~----~~~~L~sgs~-------dg 397 (609)
.+..-..+++. -||++|++-. .+..|-..++...++-+.+.- ....+..+.| +..+++++++ ||
T Consensus 126 gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg 205 (638)
T 3sbq_A 126 GDCHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDG 205 (638)
T ss_dssp CCCCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred CCcCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCC
Confidence 11112234443 2678888876 456788889988877665543 4556777776 3456776664 33
Q ss_pred eEE------------EEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeCCC---------------cEEEEeCC--
Q psy4876 398 NIV------------HHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGNDN---------------LLNIWSGV-- 448 (609)
Q Consensus 398 ~I~------------iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg---------------~I~iwd~~-- 448 (609)
... ..|..+.+...+.+- .+....+...++|.|.++.+... .|.++++.
T Consensus 206 ~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~i 283 (638)
T 3sbq_A 206 KVFDLQDENSYTMYNAIDAETMEMAFQVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAV 283 (638)
T ss_dssp SCCCTTSTTEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHH
T ss_pred cccccCChhhceEEEEEcCCccEEEEEEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHH
Confidence 311 112222211111111 12333455677888877765421 24455432
Q ss_pred -----CCCCCC-C--ccceEeec-------------CCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC------C
Q psy4876 449 -----PGQHTF-S--TQPIHSLS-------------RHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS------G 501 (609)
Q Consensus 449 -----~~~~~~-~--~~~~~~~~-------------~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t------~ 501 (609)
.++... . ..++.... .-......+..+|||++++++| -.+.++.++|++. +
T Consensus 284 e~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~G--KLsptvtV~d~~k~~~~~~~ 361 (638)
T 3sbq_A 284 EAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAG--KLSPTCSMIAIDKLPDLFAG 361 (638)
T ss_dssp HHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEEC--TTSSBEEEEEGGGHHHHHTT
T ss_pred HHHHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcC--CCCCeEEEEEeehhhhhhhc
Confidence 111000 0 01111111 1112234678899998888876 4899999999873 1
Q ss_pred ce-------eEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceEEEEeCCCCCEEEEEE--
Q psy4876 502 AC-------LDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL----------VKVAELHGHSARVLNLAM-- 562 (609)
Q Consensus 502 ~~-------~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~----------~~~~~l~~h~~~V~~l~~-- 562 (609)
+. +...+..-.....+|.++| ..++ +-+-|.+|..|++... ..+..+.-|-. +-++.-
T Consensus 362 k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYT-tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~ 438 (638)
T 3sbq_A 362 KLADPRDVIVGEPELGLGPLHTTFDGRG-NAYT-TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASL 438 (638)
T ss_dssp CCSCGGGGEEECCBCCSCEEEEEECSSS-EEEE-EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETT
T ss_pred cccCcccceEeeccCCCcccEEEECCCC-ceEe-eeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCC
Confidence 21 3444556678899999999 3333 3578999999998542 34555555543 223332
Q ss_pred ----eCCCCEEEEEEC---CCCE----------EEEEcCCCc
Q psy4876 563 ----SPDETTVLSAGA---DETL----------RLWKIFEKV 587 (609)
Q Consensus 563 ----spdg~~L~s~s~---Dg~I----------~iWdl~~~~ 587 (609)
.+||++|++... |..+ .+.|+...+
T Consensus 439 get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 439 CETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp TTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred CccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 568888888753 5443 566665543
No 314
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.22 E-value=0.00098 Score=75.33 Aligned_cols=224 Identities=9% Similarity=-0.056 Sum_probs=129.3
Q ss_pred CCeEEEEeCCCCeeEEEecCCCCceEEEEec--CCEEEEE-ecCCeEEEEEcCCC---CeeEEEEccCCCCeEEEEEccC
Q psy4876 356 LGTVQLWDVSAKKKCRTMDGHDVRVGALAWN--TYILSSG-SRCGNIVHHDVRSR---DHKVALLQNHTQEVCGLKWSPD 429 (609)
Q Consensus 356 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~--~~~L~sg-s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spd 429 (609)
.+.|++.++........+. ....+..|+|+ ...|+.+ ...+.|+.+++... ......+........+|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 3578888887655443333 23455677884 3444444 45678999988751 1111112112233567888864
Q ss_pred -CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEE-
Q psy4876 430 -GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSI- 507 (609)
Q Consensus 430 -g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~- 507 (609)
++++++-...+.|.++++... .....+.........|+++|.+..|+++..+ ..+.|.++++.... ...+
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~------~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~-~~~l~ 535 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGV------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD-IYSLV 535 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSC------CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCC-CCEES
T ss_pred CCcEEEEeccCCeEEEEecCCC------ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCC-eeEEE
Confidence 444444455678999998754 2222222223445788999987777776421 23678888775332 2222
Q ss_pred c-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcC
Q psy4876 508 D-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--HSARVLNLAMSPDETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 508 ~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~ 584 (609)
. .-.....|+|++++..|+++- ...+.|.++++........+.. .......|++..+ .++++....+.|..++..
T Consensus 536 ~~~l~~PnGlavd~~~~~LY~aD-~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 536 TENIQWPNGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp CSSCSSCCCEEECTTTCCEEEEE-TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred eCCCCCccEEEEeccCCEEEEEe-cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 2 223577899999988887764 4678899999864333222221 1223445666543 344455566889999877
Q ss_pred CCccch
Q psy4876 585 EKVKSK 590 (609)
Q Consensus 585 ~~~~~~ 590 (609)
++....
T Consensus 614 ~G~~~~ 619 (699)
T 1n7d_A 614 TGSDVN 619 (699)
T ss_dssp TEEEEE
T ss_pred CCCceE
Confidence 665443
No 315
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.19 E-value=0.028 Score=55.77 Aligned_cols=187 Identities=15% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCeeEEE
Q psy4876 346 EGYMLGVGTSL-----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHKVAL 413 (609)
Q Consensus 346 dg~~Lasgs~d-----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~~~~ 413 (609)
++..++.|+.+ ..+.+||..+.+-... +.........+.+++.+++.|+.++ .+.+||+.+.. -..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE--WFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTE--EEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCe--Eee
Confidence 56677777654 3588999887653322 2222233344556888888888664 47788887653 122
Q ss_pred EccC--CCCeEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 414 LQNH--TQEVCGLKWSPDGRYLASGGND-------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 414 ~~~h--~~~V~~l~~spdg~~lasgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
+... ...-.+++. -++++++.|+.+ ..+.+||+.+..- ..+..+.........+.+ +..+++.
T Consensus 139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW----TYIAEMSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE----EECCCCccccccccEEEE---CCEEEEE
Confidence 2111 111112222 256677777643 3588999886521 111112111111222333 3467777
Q ss_pred EeccC---CCeEEEEECCCCceeEEEcCCC---CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCc
Q psy4876 485 GGGTA---DRHIYFWNVSSGACLDSIDTKS---QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLV 545 (609)
Q Consensus 485 ggGs~---Dg~I~iwd~~t~~~~~~~~~~~---~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~ 545 (609)
||... ...+.+||+.+.+-...-.... ....+.+ +++ |++..|... ..+.+||..+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGL-LYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTE-EEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCE-EEEECCcCCCcccccEEEEcCCCCe
Confidence 75211 2468999998765432221111 1112222 344 444434322 348888877654
No 316
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.043 Score=55.36 Aligned_cols=163 Identities=7% Similarity=0.078 Sum_probs=107.9
Q ss_pred EccCCCCeEEEEEccCCCEEEEEe-CCCcEEEEeCCCCCCCCCccceEeecC----C--cccEEEEEE---cCCCCcEEE
Q psy4876 414 LQNHTQEVCGLKWSPDGRYLASGG-NDNLLNIWSGVPGQHTFSTQPIHSLSR----H--QAAVKAIAW---CPWSPNVLA 483 (609)
Q Consensus 414 ~~~h~~~V~~l~~spdg~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h--~~~V~~l~~---sp~~~~lla 483 (609)
+........+++|++....|..++ ..+.|..||...+.. ..+ .+.+ . ...+..|.| .|++ .|++
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~v 81 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH----FNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFA 81 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE----EEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEE
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE----EEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEE
Confidence 334444556789998655666665 689999999875421 111 2221 1 114589999 6875 5665
Q ss_pred EEe-c----------cCCCeEEEEECC---CCceeEEEcCC--------------CCeEEEEEcCCCCeEEEEEecCC-C
Q psy4876 484 SGG-G----------TADRHIYFWNVS---SGACLDSIDTK--------------SQVCALLWNSDYKELVSAHGFAQ-N 534 (609)
Q Consensus 484 sgg-G----------s~Dg~I~iwd~~---t~~~~~~~~~~--------------~~v~sl~~s~~g~~l~~~sG~~d-g 534 (609)
+.. | +.+..|..||+. +++.+...... .....++..++|+..++.+ .. +
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s--~~~~ 159 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA--LGMP 159 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE--ESSC
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC--CCCC
Confidence 431 0 126889999999 88877666421 2478999999999988744 45 6
Q ss_pred eEEEEECCCCceEEEEe-C-----CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 535 QLIIWKYPSLVKVAELH-G-----HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 535 ~I~Iwd~~~~~~~~~l~-~-----h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.|..++.... .+..+. . .....+.|+++|||.+|++...+|.|.-+|+..
T Consensus 160 ~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 7776665433 333221 1 112367999999999999887799999999884
No 317
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.14 E-value=0.022 Score=56.63 Aligned_cols=224 Identities=11% Similarity=0.129 Sum_probs=112.6
Q ss_pred CEEEEEeCC----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecCC-----eEEEEEcCCCCeeEEEEcc
Q psy4876 348 YMLGVGTSL----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRCG-----NIVHHDVRSRDHKVALLQN 416 (609)
Q Consensus 348 ~~Lasgs~d----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~dg-----~I~iwd~~~~~~~~~~~~~ 416 (609)
..++.|+.+ ..+.+||..+.+-... +......-..+..++.+++.|+.++ .+.+||..+.. -..+..
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~ 94 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ--WTSVAN 94 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE--EEEECC
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc--eeeCCC
Confidence 344555533 3588899887653322 2222222234455778888887653 58889987753 222211
Q ss_pred ---CCCCeEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc
Q psy4876 417 ---HTQEVCGLKWSPDGRYLASGGNDN-----LLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT 488 (609)
Q Consensus 417 ---h~~~V~~l~~spdg~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs 488 (609)
.......+. -++.+++.|+.++ .+.+||+.+..- ..+..+........++.+ +..+++.||..
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~ 165 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSSVGVGVV---GGLLYAVGGYD 165 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBSCEEEEE---TTEEEEECCEE
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccCceEEEE---CCEEEEEeCCC
Confidence 111112222 2677778887653 588899876521 111112111111222222 34677776521
Q ss_pred C-----CCeEEEEECCCCceeEEEcCC--C-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EEeCCC
Q psy4876 489 A-----DRHIYFWNVSSGACLDSIDTK--S-QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVA--ELHGHS 554 (609)
Q Consensus 489 ~-----Dg~I~iwd~~t~~~~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~--~l~~h~ 554 (609)
. -..+.+||+.+.+-...-... . ....+.+ ++ .|++..|.. .+.+.+||..+.+-.. .+....
T Consensus 166 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r 242 (302)
T 2xn4_A 166 VASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCR 242 (302)
T ss_dssp TTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCC
T ss_pred CCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcc
Confidence 1 245889999876533321111 1 1222222 34 444443432 2468999987654322 111111
Q ss_pred CCEEEEEEeCCCCEEEEEECCC-----CEEEEEcCCCc
Q psy4876 555 ARVLNLAMSPDETTVLSAGADE-----TLRLWKIFEKV 587 (609)
Q Consensus 555 ~~V~~l~~spdg~~L~s~s~Dg-----~I~iWdl~~~~ 587 (609)
.....+ .-++.+++.|+.++ .|.+||+.+..
T Consensus 243 ~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 243 RNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp BSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred ccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111122 22677777877654 48888887654
No 318
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.01 E-value=0.083 Score=54.10 Aligned_cols=219 Identities=10% Similarity=0.123 Sum_probs=122.9
Q ss_pred CeEEEEEccCCCEEEEE------------eCCCeEEEEeCCCC-eeEEE--ecC-----CCCceEEEEe----cCC--EE
Q psy4876 337 NVCSVAWIQEGYMLGVG------------TSLGTVQLWDVSAK-KKCRT--MDG-----HDVRVGALAW----NTY--IL 390 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasg------------s~dg~I~iwd~~~~-~~~~~--l~~-----h~~~V~~l~~----~~~--~L 390 (609)
...++...++|..++++ ..+|.|.++|..+. ..... +.+ ..-....|.+ ++. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566777877544443 26899999998742 11122 222 2235566665 232 33
Q ss_pred EEEec--CCeEEEEEcCCCCee---EEEEccC-CCCeEEEEEccCCCEEEEEe-----------------CCCcEEEEeC
Q psy4876 391 SSGSR--CGNIVHHDVRSRDHK---VALLQNH-TQEVCGLKWSPDGRYLASGG-----------------NDNLLNIWSG 447 (609)
Q Consensus 391 ~sgs~--dg~I~iwd~~~~~~~---~~~~~~h-~~~V~~l~~spdg~~lasgs-----------------~Dg~I~iwd~ 447 (609)
++-.. +..|.+|++...... +..+.+. -...+.+++.++|.+.++.. ..|.|+.+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 33333 467788877654322 2233322 24578999999998777654 1245555554
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC-Cce--eEEEcCCCCeEEEEEcC-CCC
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS-GAC--LDSIDTKSQVCALLWNS-DYK 523 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t-~~~--~~~~~~~~~v~sl~~s~-~g~ 523 (609)
+ + +..+...-..-+.++|+|+++.++++- +..+.|..|++.. +.. ...+......-.+++.+ +|.
T Consensus 211 --~------~-~~~~~~~l~~pNGia~spDg~~lYvad--t~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 211 --N------D-VRVVAEGFDFANGINISPDGKYVYIAE--LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 279 (355)
T ss_dssp --T------C-CEEEEEEESSEEEEEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred --C------e-EEEeecCCcccCcceECCCCCEEEEEe--CCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCc
Confidence 2 1 122222334568999999998888876 4678999999863 432 23444456778899999 588
Q ss_pred eEEEEEecCCCeEEEEECC--CCceEEEEeC---CCCCEEEEEEeCCCCE
Q psy4876 524 ELVSAHGFAQNQLIIWKYP--SLVKVAELHG---HSARVLNLAMSPDETT 568 (609)
Q Consensus 524 ~l~~~sG~~dg~I~Iwd~~--~~~~~~~l~~---h~~~V~~l~~spdg~~ 568 (609)
+.+++. ...+.|..|+.. .+..+..+.. -...|..+ |..||+.
T Consensus 280 lwva~~-~~g~~v~~~~P~~~~~s~v~rI~~~~~~~~~v~~v-~~ddG~~ 327 (355)
T 3sre_A 280 LWVGCH-PNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV-YAENGTV 327 (355)
T ss_dssp EEEEEE-SCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE-EEECSSS
T ss_pred EEEEec-CCceEEEEECCCCCCCCEEEEEEccCCCCcEEEEE-EEcCCCE
Confidence 777653 122334444432 2444544442 22334444 4446653
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.85 E-value=0.044 Score=54.70 Aligned_cols=149 Identities=14% Similarity=0.162 Sum_probs=78.8
Q ss_pred CCCEEEEEeC----C-----CeEEEEeCCCCeeEE--EecCCCCceEEEEecCCEEEEEecC-----CeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTS----L-----GTVQLWDVSAKKKCR--TMDGHDVRVGALAWNTYILSSGSRC-----GNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~----d-----g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~~~~~L~sgs~d-----g~I~iwd~~~~~~ 409 (609)
++..++.|+. + ..+.+||..+.+-.. .+.........+.+++.+++.|+.+ ..+.+||+.+..-
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 5666666665 2 358899988765322 2222223334455578888887754 3578889876531
Q ss_pred e-EEEEccCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 410 K-VALLQNHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~-~~~~~~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. +..+.........+.+ ++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..+++
T Consensus 150 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv 220 (308)
T 1zgk_A 150 HLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW----RMITAMNTIRSGAGVCVL---HNCIYA 220 (308)
T ss_dssp EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEEE
T ss_pred eECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE----eeCCCCCCccccceEEEE---CCEEEE
Confidence 1 1111111111122222 67777777754 4689999876521 111111111112223333 346777
Q ss_pred EEeccC---CCeEEEEECCCCce
Q psy4876 484 SGGGTA---DRHIYFWNVSSGAC 503 (609)
Q Consensus 484 sggGs~---Dg~I~iwd~~t~~~ 503 (609)
.||... -..+.+||+.+.+-
T Consensus 221 ~GG~~~~~~~~~v~~yd~~~~~W 243 (308)
T 1zgk_A 221 AGGYDGQDQLNSVERYDVETETW 243 (308)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEE
T ss_pred EeCCCCCCccceEEEEeCCCCcE
Confidence 775211 25689999987653
No 320
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.84 E-value=0.11 Score=51.76 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=77.9
Q ss_pred ccCCCEEEEEeC-----C------CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC--------CeEEEE
Q psy4876 344 IQEGYMLGVGTS-----L------GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC--------GNIVHH 402 (609)
Q Consensus 344 spdg~~Lasgs~-----d------g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d--------g~I~iw 402 (609)
..++..++.|+. . ..+.+||..+.+-... +.........+.+++.+++.|+.+ ..+.+|
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~ 122 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCY 122 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEE
Confidence 346777777773 1 1378889887653221 211112223344577788887743 358889
Q ss_pred EcCCCCe-eEEEEccCCCCeEEEEEccCCCEEEEEeC-C-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEc
Q psy4876 403 DVRSRDH-KVALLQNHTQEVCGLKWSPDGRYLASGGN-D-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWC 475 (609)
Q Consensus 403 d~~~~~~-~~~~~~~h~~~V~~l~~spdg~~lasgs~-D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 475 (609)
|..+..- .+..+....... +++. -++++++.|+. + ..+.+||..+..- ..+..+........++.+
T Consensus 123 d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~- 195 (315)
T 4asc_A 123 DRLSFKWGESDPLPYVVYGH-TVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEW----KELAPMQTARSLFGATVH- 195 (315)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE-
T ss_pred CCCCCcEeECCCCCCcccce-eEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeE----EECCCCCCchhceEEEEE-
Confidence 9887531 111111111111 1222 35677777776 2 4689999886521 111111111111222333
Q ss_pred CCCCcEEEEEeccCC---CeEEEEECCCCce
Q psy4876 476 PWSPNVLASGGGTAD---RHIYFWNVSSGAC 503 (609)
Q Consensus 476 p~~~~llasggGs~D---g~I~iwd~~t~~~ 503 (609)
+..+++.||...+ ..+.+||+.+.+-
T Consensus 196 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 196 --DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp --TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred --CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 3467777762222 2688999987653
No 321
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.77 E-value=0.73 Score=48.77 Aligned_cols=103 Identities=9% Similarity=0.055 Sum_probs=61.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEecC------CCCceEEEEec-----CCEEEEEec-------
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTMDG------HDVRVGALAWN-----TYILSSGSR------- 395 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l~~------h~~~V~~l~~~-----~~~L~sgs~------- 395 (609)
....+|+|.|+|+++++-...+.|.+++..+++. +..+.. .......|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 4678999999998776544434798888655543 222321 24567789996 445554432
Q ss_pred ------CCeEEEEEcCCCC------eeEE-EEc-cCCCCeEEEEEccCCCEEEEEeC
Q psy4876 396 ------CGNIVHHDVRSRD------HKVA-LLQ-NHTQEVCGLKWSPDGRYLASGGN 438 (609)
Q Consensus 396 ------dg~I~iwd~~~~~------~~~~-~~~-~h~~~V~~l~~spdg~~lasgs~ 438 (609)
...|.-+++.... ..+. .+. ........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 1111 122 11235789999999987776553
No 322
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.75 E-value=0.23 Score=49.52 Aligned_cols=151 Identities=13% Similarity=0.130 Sum_probs=78.1
Q ss_pred EccCCCEEEEEeC----CC-------eEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEecC-------CeEEEE
Q psy4876 343 WIQEGYMLGVGTS----LG-------TVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSRC-------GNIVHH 402 (609)
Q Consensus 343 ~spdg~~Lasgs~----dg-------~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~d-------g~I~iw 402 (609)
...++..++.|+. ++ .+.+||..+.+-... +.........+.+++.+++.|+.+ ..+.+|
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEE
Confidence 3456777777873 12 277889877653322 222222234445578888888864 247788
Q ss_pred EcCCCCeeEEEEccCCCCe--EEEEEccCCCEEEEEeC------CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEE
Q psy4876 403 DVRSRDHKVALLQNHTQEV--CGLKWSPDGRYLASGGN------DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAW 474 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V--~~l~~spdg~~lasgs~------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 474 (609)
|..+.. -..+....... .+++. .++.+++.|+. -..+.+||+.+..- ..+..+........++.+
T Consensus 133 d~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~ 205 (318)
T 2woz_A 133 DPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW----KDLAPMKTPRSMFGVAIH 205 (318)
T ss_dssp ETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE
T ss_pred eCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE----EECCCCCCCcccceEEEE
Confidence 887653 12221111111 11222 46777777764 24589999887521 111111111111222332
Q ss_pred cCCCCcEEEEEeccCC---CeEEEEECCCCce
Q psy4876 475 CPWSPNVLASGGGTAD---RHIYFWNVSSGAC 503 (609)
Q Consensus 475 sp~~~~llasggGs~D---g~I~iwd~~t~~~ 503 (609)
+..+++.||...+ ..+.+||+.+.+-
T Consensus 206 ---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 206 ---KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ---TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ---CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 3467777753222 4577899887653
No 323
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.70 E-value=0.42 Score=48.85 Aligned_cols=174 Identities=11% Similarity=0.126 Sum_probs=104.0
Q ss_pred cCCeEEEEEcCCCCeeEE--EEcc-----CCCCeEEEEEcc--CCC-EEEEE-eC--CCcEEEEeCCCCCCCCCccceEe
Q psy4876 395 RCGNIVHHDVRSRDHKVA--LLQN-----HTQEVCGLKWSP--DGR-YLASG-GN--DNLLNIWSGVPGQHTFSTQPIHS 461 (609)
Q Consensus 395 ~dg~I~iwd~~~~~~~~~--~~~~-----h~~~V~~l~~sp--dg~-~lasg-s~--Dg~I~iwd~~~~~~~~~~~~~~~ 461 (609)
.+|.|.++|..+...... .+.+ ......+|.+.+ +|. +|+++ .. +..|.+|++..... ....+..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~ 158 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKT 158 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEec
Confidence 689999999874321222 2222 234677888866 454 34444 33 45788887765421 1133344
Q ss_pred ecCC-cccEEEEEEcCCCCcEEEEEec---------------cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeE
Q psy4876 462 LSRH-QAAVKAIAWCPWSPNVLASGGG---------------TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKEL 525 (609)
Q Consensus 462 ~~~h-~~~V~~l~~sp~~~~llasggG---------------s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l 525 (609)
+.+. -...+.+.+.++|. ++++... ...+.|+.+|. +++......-.....++|+||++.+
T Consensus 159 ~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~l 235 (355)
T 3sre_A 159 IRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYV 235 (355)
T ss_dssp ECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEE
T ss_pred cccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEE
Confidence 4432 23578999999884 5554320 01355666665 3433333344578999999999999
Q ss_pred EEEEecCCCeEEEEECCC-Cce--EEEEeCCCCCEEEEEEeC-CCCEEEEEECC
Q psy4876 526 VSAHGFAQNQLIIWKYPS-LVK--VAELHGHSARVLNLAMSP-DETTVLSAGAD 575 (609)
Q Consensus 526 ~~~sG~~dg~I~Iwd~~~-~~~--~~~l~~h~~~V~~l~~sp-dg~~L~s~s~D 575 (609)
+++. +..+.|..|++.. +.. ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus 236 Yvad-t~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 236 YIAE-LLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEE-GGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred EEEe-CCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 8874 3678999999853 322 2233 2245677889999 59877766544
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.62 E-value=0.061 Score=53.59 Aligned_cols=226 Identities=9% Similarity=0.050 Sum_probs=112.7
Q ss_pred CCCEEEEEeCC----CeEEEEeCCCCeeEEE--ecCCCCceEEEEecCCEEEEEec----C-----CeEEEEEcCCCCee
Q psy4876 346 EGYMLGVGTSL----GTVQLWDVSAKKKCRT--MDGHDVRVGALAWNTYILSSGSR----C-----GNIVHHDVRSRDHK 410 (609)
Q Consensus 346 dg~~Lasgs~d----g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~~~~~L~sgs~----d-----g~I~iwd~~~~~~~ 410 (609)
++..++.|+.+ ..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+.+..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~-- 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ-- 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE--
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCe--
Confidence 45666666632 3689999887653322 22111222344457788888776 3 357888887653
Q ss_pred EEEEc---cCCCCeEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 411 VALLQ---NHTQEVCGLKWSPDGRYLASGGND-----NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 ~~~~~---~h~~~V~~l~~spdg~~lasgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
-..+. ........+.+ ++++++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..++
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iy 172 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL---NRLLY 172 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEE
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE---CCEEE
Confidence 11111 11111222222 67777777643 4688999886521 111111111111222333 34677
Q ss_pred EEEeccC---CCeEEEEECCCCceeEEEc--CCC-CeEEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EE
Q psy4876 483 ASGGGTA---DRHIYFWNVSSGACLDSID--TKS-QVCALLWNSDYKELVSAHGFA----QNQLIIWKYPSLVKVA--EL 550 (609)
Q Consensus 483 asggGs~---Dg~I~iwd~~t~~~~~~~~--~~~-~v~sl~~s~~g~~l~~~sG~~----dg~I~Iwd~~~~~~~~--~l 550 (609)
+.||... -..+.+||+.+.+-...-. ... ....+.+ ++ .|++..|.. .+.+.+||..+.+-.. .+
T Consensus 173 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 249 (308)
T 1zgk_A 173 AVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPM 249 (308)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCC
T ss_pred EEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCC
Confidence 7775211 2568999988765332211 111 1222222 34 444443432 2568999987654322 11
Q ss_pred eCCCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCCCc
Q psy4876 551 HGHSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFEKV 587 (609)
Q Consensus 551 ~~h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~~~ 587 (609)
.........+. -++++++.|+.+ ..|.+||+.+..
T Consensus 250 p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 250 KHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp SSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 11111112222 267777777754 356788876643
No 325
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.60 E-value=0.76 Score=46.71 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=126.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee--EEEe----cCCCCceEEEEecC-----CEEEEE---ecCCeE
Q psy4876 334 GNENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK--CRTM----DGHDVRVGALAWNT-----YILSSG---SRCGNI 399 (609)
Q Consensus 334 h~~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~--~~~l----~~h~~~V~~l~~~~-----~~L~sg---s~dg~I 399 (609)
.-.....|+|.|+|.++++--..|.|++++...++. +..+ .........|++++ ..|+.. ..++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 456788999999998777655489999998765543 2222 12356678899953 334332 245567
Q ss_pred EEEEcCCC---------CeeE-EEEc-cCCCCeEEEEEccCCCEEEEEeC-------------CCcEEEEeCCCCC---C
Q psy4876 400 VHHDVRSR---------DHKV-ALLQ-NHTQEVCGLKWSPDGRYLASGGN-------------DNLLNIWSGVPGQ---H 452 (609)
Q Consensus 400 ~iwd~~~~---------~~~~-~~~~-~h~~~V~~l~~spdg~~lasgs~-------------Dg~I~iwd~~~~~---~ 452 (609)
.-|.+... ...+ ..+. .....-..|+|.|||.+.++.+. -|.|.-.+....- .
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 77766541 1111 1222 11223467999999987776542 2455555554210 0
Q ss_pred CCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCc------------------eeEEEcCC-CCe
Q psy4876 453 TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGA------------------CLDSIDTK-SQV 513 (609)
Q Consensus 453 ~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~------------------~~~~~~~~-~~v 513 (609)
.+....+.. .+|.. ...++|+|++ .|+++-.| .|+.=.|--+..|. .+..+..+ ...
T Consensus 190 Pf~~~~i~a-~G~RN-p~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 190 PFPGSPVYS-YGHRN-VQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp SSTTCCEEE-BCCSB-CCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCeEEe-eCCCC-cceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 000011222 24443 4589999976 56666432 23222222222221 12223222 355
Q ss_pred EEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----EEEEeCCCCCEEEEEEeCCCCEEEEEE
Q psy4876 514 CALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK----VAELHGHSARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~L~s~s 573 (609)
..++|.. +..++. ....+.|....+..... ...+.+...++.+|+..|||.++++..
T Consensus 266 ~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6777763 443333 34555666656544321 223344457899999999998766654
No 326
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.49 E-value=0.36 Score=48.17 Aligned_cols=213 Identities=8% Similarity=-0.037 Sum_probs=120.3
Q ss_pred ccCCCEEEEEe--CCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecC--------------CeEEEEEcCCC
Q psy4876 344 IQEGYMLGVGT--SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRC--------------GNIVHHDVRSR 407 (609)
Q Consensus 344 spdg~~Lasgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~d--------------g~I~iwd~~~~ 407 (609)
+.+|..|+... .++.|...+.+... ...+.. ..+..+..++..|+-.... ..|+..++...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 35677777664 24566666654333 333332 2244555567666655432 46777777765
Q ss_pred CeeEEEEccCCCCeEEEEEccCCCEEEEEe----CCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 408 DHKVALLQNHTQEVCGLKWSPDGRYLASGG----NDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 408 ~~~~~~~~~h~~~V~~l~~spdg~~lasgs----~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
. ...+... . +..|++++++|+... ....|+..++... ....+..+.. .+|+++++.|+.
T Consensus 99 ~--~~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-------~~~~lt~~~~----~~~~~~g~~iy~ 161 (302)
T 3s25_A 99 G--STVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-------EKKKIKNHYL----FTCNTSDRYFYY 161 (302)
T ss_dssp C--CEEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-------CCEEEESSCC----CCSEEETTEEEE
T ss_pred c--ceEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-------CeEEEeCCCc----eEeeEECCEEEE
Confidence 3 2222211 1 236788899988776 3446666777643 2333443332 456778888887
Q ss_pred EEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEe
Q psy4876 484 SGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMS 563 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~s 563 (609)
+.. ....|.+-++..+.....+. .... ..++|++.+|+.+.......|..-++..... ..|. ...+ ..|+
T Consensus 162 t~~--g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~ 231 (302)
T 3s25_A 162 NNP--KNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT--EANI--EHYN 231 (302)
T ss_dssp ECT--TTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECS--CSCE--EEEE
T ss_pred EeC--CCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe--CCCc--ceEE
Confidence 752 46788888987665443333 2222 3466999999887643335677777665443 2332 1233 3477
Q ss_pred CCCCEEEEEEC--CCCEEEEEcCCC
Q psy4876 564 PDETTVLSAGA--DETLRLWKIFEK 586 (609)
Q Consensus 564 pdg~~L~s~s~--Dg~I~iWdl~~~ 586 (609)
|++.+|+-+.. .+.|..-++...
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSC
T ss_pred ECCCEEEEEECCCCcEEEEEECCCC
Confidence 78887776533 244444455443
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.46 E-value=1.7 Score=49.04 Aligned_cols=260 Identities=13% Similarity=0.148 Sum_probs=150.4
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee-c-CCCCeEEEEEccCC
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL-E-GNENVCSVAWIQEG 347 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-h~~~V~~v~~spdg 347 (609)
-.|++|.-..+|.+=.+....+..||-.. ....... . ....|.++.-..+|
T Consensus 22 n~V~~I~qD~~G~lWigT~~GL~ryDG~~---------------------------~~~~~~~~~~~~~~i~~i~~d~~g 74 (758)
T 3ott_A 22 SVVSCFLQDSEGLIWIGSNKGLFSYDGYS---------------------------TQQHFTYGENNNTRIYCGVIIDNT 74 (758)
T ss_dssp CCEEEEEECTTSCEEEEESSCEEEECSSC---------------------------EEECSCTTSTTSSCEEEEEEETTT
T ss_pred ceEEEEEECCCCCEEEEECCCccccCCCc---------------------------eEEEEccCCCCCceEEEEEEcCCC
Confidence 35788887787744444445577777432 1111000 1 24568888776665
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc-----cCCCCeE
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ-----NHTQEVC 422 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~ 422 (609)
.|.+|+.+| +.+||..+.+...........|.++..+...|..++.+ .|..+|..+.. ...+. .....|.
T Consensus 75 -~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~ 149 (758)
T 3ott_A 75 -YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIY 149 (758)
T ss_dssp -EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEE
T ss_pred -cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEE
Confidence 566777766 78999887653321111233577666555567777766 58888887642 33331 1234688
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec--C----CcccEEEEEEcCCCCcEEEEEeccCCCeEEEE
Q psy4876 423 GLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS--R----HQAAVKAIAWCPWSPNVLASGGGTADRHIYFW 496 (609)
Q Consensus 423 ~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~----h~~~V~~l~~sp~~~~llasggGs~Dg~I~iw 496 (609)
++....+|.+.+ |+.+ -|..+|..++. ...+. . ....|.++....++..+.+ | + ++-|..+
T Consensus 150 ~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~-------~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-g--t-~~Gl~~~ 216 (758)
T 3ott_A 150 SIIRTKDNQIYV-GTYN-GLCRYIPSNGK-------FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-G--T-EGYLFQY 216 (758)
T ss_dssp EEEECTTCCEEE-EETT-EEEEEETTTTE-------EEEECCCCCTTCSSCCEEEEEEETTTTEEEE-E--E-EEEEEEE
T ss_pred EEEEcCCCCEEE-EeCC-CHhhCccCCCc-------eEEecCCCccccccceeEEEEEECCCCEEEE-E--E-CCCCeEE
Confidence 888888887655 4544 47788876541 11111 1 1234888888776654444 2 2 3458889
Q ss_pred ECCCCceeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeC--------CCCCEEEEEEeCCCC
Q psy4876 497 NVSSGACLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHG--------HSARVLNLAMSPDET 567 (609)
Q Consensus 497 d~~t~~~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~ 567 (609)
|..+++...... ....|.++....+|...+. . ++-|.+++..+.... .+.. ....|.++....+|.
T Consensus 217 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig---T-~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~D~~g~ 291 (758)
T 3ott_A 217 FPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG---T-DNGLYVYHNDTTPLQ-HIIHDSRNIQSLTNNIIWNIFADQEHN 291 (758)
T ss_dssp ETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE---E-TTEEEEECCTTSCCE-EECCCTTCTTSCSCSCEEEEEECTTCC
T ss_pred cCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE---e-CCceeEEecCCCcEE-EEEcCCCCcCcCCcCeEEEEEEcCCCC
Confidence 987765432211 1235778888877776654 2 356888887665432 2211 124588888887776
Q ss_pred EEEEEECCCCEEEE
Q psy4876 568 TVLSAGADETLRLW 581 (609)
Q Consensus 568 ~L~s~s~Dg~I~iW 581 (609)
+-+ |+..| |.++
T Consensus 292 lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 292 IWL-GTDYG-ISLS 303 (758)
T ss_dssp EEE-EESSS-EEEE
T ss_pred EEE-EeCCc-cccc
Confidence 443 44455 5443
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.45 E-value=0.16 Score=50.60 Aligned_cols=220 Identities=10% Similarity=0.057 Sum_probs=106.5
Q ss_pred EEEEeCCCeEEEEeCCCCeeEE-EecCCCCc--eEEEEecCCEEEEEec----C-------CeEEEEEcCCCCeeEEEEc
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCR-TMDGHDVR--VGALAWNTYILSSGSR----C-------GNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~-~l~~h~~~--V~~l~~~~~~L~sgs~----d-------g~I~iwd~~~~~~~~~~~~ 415 (609)
++.|+ ..+.+||..+++-.. .+.....+ ...+..++.+++.|+. + ..+.+||..+.. -..+.
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~ 83 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE--WLGMP 83 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE--EEECC
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe--EEECC
Confidence 44455 579999998876432 22221122 2233347788888884 1 127788887653 12221
Q ss_pred cCCCCe--EEEEEccCCCEEEEEeCC--------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEE
Q psy4876 416 NHTQEV--CGLKWSPDGRYLASGGND--------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASG 485 (609)
Q Consensus 416 ~h~~~V--~~l~~spdg~~lasgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasg 485 (609)
.....- .+++.. ++.+++.|+.+ ..+.+||..+..- ..+..+........++.+ +..+++.|
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~G 155 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYGHTVLSH---MDLVYVIG 155 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE---TTEEEEEC
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccceeEEEE---CCEEEEEe
Confidence 111110 112222 56677777742 4589999887521 111111111111122222 33577777
Q ss_pred eccC----CCeEEEEECCCCceeEEEcCC--C-CeEEEEEcCCCCeEEEEEecCCC----eEEEEECCCCceEEE--EeC
Q psy4876 486 GGTA----DRHIYFWNVSSGACLDSIDTK--S-QVCALLWNSDYKELVSAHGFAQN----QLIIWKYPSLVKVAE--LHG 552 (609)
Q Consensus 486 gGs~----Dg~I~iwd~~t~~~~~~~~~~--~-~v~sl~~s~~g~~l~~~sG~~dg----~I~Iwd~~~~~~~~~--l~~ 552 (609)
|... -..+.+||..+.+-...-... . ....+.+ ++ .|++..|..+. .+.+||..+.+-... +..
T Consensus 156 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~ 232 (315)
T 4asc_A 156 GKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232 (315)
T ss_dssp CBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS
T ss_pred CCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCC
Confidence 5212 246899999876432211111 1 1122222 44 44444454332 588899876543221 111
Q ss_pred CCCCEEEEEEeCCCCEEEEEECCC--------------CEEEEEcCCC
Q psy4876 553 HSARVLNLAMSPDETTVLSAGADE--------------TLRLWKIFEK 586 (609)
Q Consensus 553 h~~~V~~l~~spdg~~L~s~s~Dg--------------~I~iWdl~~~ 586 (609)
.......+. -++++++.|+.++ .|.+||+.+.
T Consensus 233 ~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 233 ERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred cccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 111112222 2667777777642 3667787654
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.42 E-value=0.36 Score=50.15 Aligned_cols=139 Identities=11% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecC---CCCeEEEEEccCCCEEEEEeCC
Q psy4876 280 FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEG---NENVCSVAWIQEGYMLGVGTSL 356 (609)
Q Consensus 280 ~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h---~~~V~~v~~spdg~~Lasgs~d 356 (609)
+.-+....++.||.-++.. +..-++..+++ -..|..+..+|+|++||..+.
T Consensus 32 ~t~i~~a~~n~iR~~~i~~-------------------------~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~- 85 (452)
T 3pbp_A 32 GTRIVFIQDNIIRWYNVLT-------------------------DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND- 85 (452)
T ss_dssp TTEEEEEETTEEEEEETTT-------------------------CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-
T ss_pred CCEEEEEECCEEEEEECCC-------------------------CCcceEEecCcccccCceeEEEECCCCCEEEEecC-
Confidence 3466677788999888875 22223333331 236788999999999998866
Q ss_pred CeEEEEeCCCCe------------eEEEecC------CCCceEEEEec-----CCEEEEEecCCeEEEEEcCCCC-eeEE
Q psy4876 357 GTVQLWDVSAKK------------KCRTMDG------HDVRVGALAWN-----TYILSSGSRCGNIVHHDVRSRD-HKVA 412 (609)
Q Consensus 357 g~I~iwd~~~~~------------~~~~l~~------h~~~V~~l~~~-----~~~L~sgs~dg~I~iwd~~~~~-~~~~ 412 (609)
..|.|-.+..+. ..+.+.- ...+|..+.|+ +..|++-..|+.|++||+.... .+.
T Consensus 86 ~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~- 164 (452)
T 3pbp_A 86 NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI- 164 (452)
T ss_dssp SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-
T ss_pred CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-
Confidence 579998886321 1223322 25779999995 5799999999999999998632 222
Q ss_pred EEc---------cCCCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q psy4876 413 LLQ---------NHTQEVCGLKWSPDGRYLASGG--NDNLLNIW 445 (609)
Q Consensus 413 ~~~---------~h~~~V~~l~~spdg~~lasgs--~Dg~I~iw 445 (609)
.+. .....|.+++|..++-.|...+ .+|.|+-.
T Consensus 165 ~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 165 VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 332 1226789999999887676655 77888654
No 330
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.41 E-value=1 Score=45.93 Aligned_cols=222 Identities=14% Similarity=0.110 Sum_probs=121.2
Q ss_pred EEEEEecCCC-eEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeee---c-CCCCeEEEEEccC
Q psy4876 272 LNLIDWSHFN-VLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDL---E-GNENVCSVAWIQE 346 (609)
Q Consensus 272 v~~l~wsp~~-lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-h~~~V~~v~~spd 346 (609)
-..|+|.|++ ++.+..++.|++++. . +. ..+..+ . .......|+|+|+
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d~-~-------------------------G~-~~~~~~~v~~~g~~g~~gia~~pd 83 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLISP-S-------------------------GK-KLVASFDVANVGEAGLLGLALHPE 83 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEECS-S-------------------------CE-EEEEECCCCCSTTCSEEEEEECTT
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEeC-C-------------------------Cc-eEeeccceeecCCCceeeEEeCCC
Confidence 4568999987 666777899999973 3 32 223222 1 3456889999998
Q ss_pred ---CCEEEEEeC----C----CeEEEEeCCCC-------ee-EEEecC-CCCceEEEEe--cCCEEEEEec---------
Q psy4876 347 ---GYMLGVGTS----L----GTVQLWDVSAK-------KK-CRTMDG-HDVRVGALAW--NTYILSSGSR--------- 395 (609)
Q Consensus 347 ---g~~Lasgs~----d----g~I~iwd~~~~-------~~-~~~l~~-h~~~V~~l~~--~~~~L~sgs~--------- 395 (609)
+..|+++.. + ..|..|+.... +. +..+.. .......|.| ++.++++.+.
T Consensus 84 f~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d 163 (354)
T 3a9g_A 84 FPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQD 163 (354)
T ss_dssp TTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTC
T ss_pred CCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccC
Confidence 555555443 2 56777877643 11 111221 1112356777 5666665432
Q ss_pred ----CCeEEEEEcCCC--------CeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCC---cEEEEeCCCCCCC------
Q psy4876 396 ----CGNIVHHDVRSR--------DHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDN---LLNIWSGVPGQHT------ 453 (609)
Q Consensus 396 ----dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg---~I~iwd~~~~~~~------ 453 (609)
.|.|..++.+.. ...+ ...+|. ....++|+| +|.++++-...+ .|.+.. .+..-
T Consensus 164 ~~~~~G~I~ri~~dG~~p~~npf~~~~i-~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~ 239 (354)
T 3a9g_A 164 LSSLAGKILRVDEEGRPPADNPFPNSPI-WSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLAT 239 (354)
T ss_dssp TTCCSSEEEEECTTSCCCTTSSSTTCCE-EEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCC
T ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCcE-EEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCccc
Confidence 255666665432 1112 122343 356899999 676555533222 244332 22100
Q ss_pred ------CCccceEeecCCcccEEEEEEc-------CCCCcEEEEEeccCCCeEEEEECCCC-cee--EEEcC--CCCeEE
Q psy4876 454 ------FSTQPIHSLSRHQAAVKAIAWC-------PWSPNVLASGGGTADRHIYFWNVSSG-ACL--DSIDT--KSQVCA 515 (609)
Q Consensus 454 ------~~~~~~~~~~~h~~~V~~l~~s-------p~~~~llasggGs~Dg~I~iwd~~t~-~~~--~~~~~--~~~v~s 515 (609)
....++..+.........++|. .++ .++++. ...+.|...++... +.. ..+-. ...+..
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G-~l~v~~--~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~ 316 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG-WLLIAC--LRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRD 316 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT-EEEEEE--TTTTEEEEEEECGGGCEEEEEEECTTTSCCEEE
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC-cEEEEE--cCCCEEEEEEECCCCcccceeeeccCCCCCeeE
Confidence 0012444442223456788884 334 565554 35788888888753 332 23322 357889
Q ss_pred EEEcCCCCeEEE
Q psy4876 516 LLWNSDYKELVS 527 (609)
Q Consensus 516 l~~s~~g~~l~~ 527 (609)
+++.|+|..+++
T Consensus 317 v~~~pDG~lyv~ 328 (354)
T 3a9g_A 317 VVIDDDGGILIS 328 (354)
T ss_dssp EEECTTSCEEEE
T ss_pred EEECCCCcEEEE
Confidence 999999865555
No 331
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.29 E-value=0.25 Score=49.30 Aligned_cols=215 Identities=12% Similarity=0.096 Sum_probs=102.6
Q ss_pred eEEEEeCCCCeeEE-EecCCC--CceEEEEecCCEEEEEec----CC-------eEEEEEcCCCCeeEEEEcc---CCCC
Q psy4876 358 TVQLWDVSAKKKCR-TMDGHD--VRVGALAWNTYILSSGSR----CG-------NIVHHDVRSRDHKVALLQN---HTQE 420 (609)
Q Consensus 358 ~I~iwd~~~~~~~~-~l~~h~--~~V~~l~~~~~~L~sgs~----dg-------~I~iwd~~~~~~~~~~~~~---h~~~ 420 (609)
.+.+||..+++-.. .+.... .....+..++.+++.|+. ++ .+.+||..+.. -..+.. ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~ 102 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE--WVGLPPLPSARCL 102 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTE--EEECSCBSSCBCS
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCc--EEECCCCCccccc
Confidence 48899998876433 222111 122223337788888873 12 16778887652 222211 1111
Q ss_pred eEEEEEccCCCEEEEEeCC-------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccC----
Q psy4876 421 VCGLKWSPDGRYLASGGND-------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA---- 489 (609)
Q Consensus 421 V~~l~~spdg~~lasgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~---- 489 (609)
...+.+ ++.+++.|+.+ ..+.+||..+..- ..+..+........++.. +..+++.||...
T Consensus 103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYGHNVISH---NGMIYCLGGKTDDKKC 173 (318)
T ss_dssp CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEESCEEEEE---TTEEEEECCEESSSCB
T ss_pred cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccccEEEEE---CCEEEEEcCCCCCCCc
Confidence 122222 56777777754 3588899876521 111111111111112222 346777775211
Q ss_pred CCeEEEEECCCCceeEEEcCCC--CeEEEEEcCCCCeEEEEEecCC----CeEEEEECCCCceE--EEEeCCCCCEEEEE
Q psy4876 490 DRHIYFWNVSSGACLDSIDTKS--QVCALLWNSDYKELVSAHGFAQ----NQLIIWKYPSLVKV--AELHGHSARVLNLA 561 (609)
Q Consensus 490 Dg~I~iwd~~t~~~~~~~~~~~--~v~sl~~s~~g~~l~~~sG~~d----g~I~Iwd~~~~~~~--~~l~~h~~~V~~l~ 561 (609)
-..+.+||+.+.+-...-.... .-.+++.. ++ .|++..|..+ +.+.+||..+.+-. ..+.........+
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~- 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV- 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-
Confidence 2468999998765332211111 11122222 34 4444434332 35778898765422 2221111111222
Q ss_pred EeCCCCEEEEEECC--------------CCEEEEEcCCCc
Q psy4876 562 MSPDETTVLSAGAD--------------ETLRLWKIFEKV 587 (609)
Q Consensus 562 ~spdg~~L~s~s~D--------------g~I~iWdl~~~~ 587 (609)
.-++.+++.|+.+ ..|.+||+.+..
T Consensus 251 -~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 251 -SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp -EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred -EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2366777777654 357778876643
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.21 E-value=2.3 Score=47.95 Aligned_cols=264 Identities=13% Similarity=0.099 Sum_probs=144.9
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
.|.+|.-..++.|=++.+..+..||..+ ........ .....|.++.. .+| .|
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~-------------------------~~f~~~~~-~~~~~i~~i~~-~~g-~l 115 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRA-------------------------DRYEQPET-DFPTDVRTMAL-QGD-TL 115 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTT-------------------------TEECCCSC-CCCSCEEEEEE-ETT-EE
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCC-------------------------CEEECccc-CCCceEEEEEe-cCC-cE
Confidence 4677776777744444456789999876 22221000 02235766654 344 56
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEec----CCCCceEEEEec-CCEEEEEecCCeEEEEEcCCCCeeEEEEccC------CC
Q psy4876 351 GVGTSLGTVQLWDVSAKKKCRTMD----GHDVRVGALAWN-TYILSSGSRCGNIVHHDVRSRDHKVALLQNH------TQ 419 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~~-~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~ 419 (609)
.+|+.+ -|..+|..+++...... .....|.++..+ ...|..|+.+ -|..++..+.. ...+... ..
T Consensus 116 Wigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~~~ 191 (758)
T 3ott_A 116 WLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGK--FEGIPLPVHSSQSNL 191 (758)
T ss_dssp EEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTTTE--EEEECCCCCTTCSSC
T ss_pred EEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCCCc--eEEecCCCccccccc
Confidence 667776 58889987655432211 123467887774 3445556654 47778876642 2222211 22
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVS 499 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~ 499 (609)
.|.++....++..|-.|+. +-|..+|..++.. .....+ ....|.++....+|. +.+. + ++-|.++|..
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~----~~~~~l--~~~~i~~i~~d~~g~-lWig---T-~~Gl~~~~~~ 259 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI----KQTEAF--HNNSIKSLALDGNGD-LLAG---T-DNGLYVYHND 259 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE----EEEEEE--EEEEEEEEEECTTCC-EEEE---E-TTEEEEECCT
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE----EeccCC--CCCeEEEEEEcCCCC-EEEE---e-CCceeEEecC
Confidence 4888888877765555554 4588899776521 111112 234578888877764 4442 2 3458888887
Q ss_pred CCceeEEEc--------CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEe-----CCCCCEEEEEEeCCC
Q psy4876 500 SGACLDSID--------TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELH-----GHSARVLNLAMSPDE 566 (609)
Q Consensus 500 t~~~~~~~~--------~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg 566 (609)
++....... ....|.++....+|..-+. ...| +.++.....-...... .....|.++.-..+|
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiG---T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g 335 (758)
T 3ott_A 260 TTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLG---TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG 335 (758)
T ss_dssp TSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEE---ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC
T ss_pred CCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEE---eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCC
Confidence 665432211 1235888888887775553 2345 5554432211111110 123468888888777
Q ss_pred CEEEEEECCCCEEEEEcC
Q psy4876 567 TTVLSAGADETLRLWKIF 584 (609)
Q Consensus 567 ~~L~s~s~Dg~I~iWdl~ 584 (609)
.+.+ |+.+| +..++..
T Consensus 336 ~lWi-Gt~~G-l~~~~~~ 351 (758)
T 3ott_A 336 FYWF-GGANG-LIRFTDP 351 (758)
T ss_dssp CEEE-EETTE-EEEESCT
T ss_pred CEEE-eeCCc-ceeeccc
Confidence 7554 34554 5555443
No 333
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.16 E-value=0.081 Score=55.02 Aligned_cols=108 Identities=11% Similarity=0.202 Sum_probs=80.0
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCC-----CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTK-----SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-- 545 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~-----~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-- 545 (609)
..+.+|..+++. .++.||.-++..+...+.+... ..+..+..+|+|.+|+.. .+..|.|..++.+.
T Consensus 27 ~~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCcccc
Confidence 345556566654 4799999998865556666543 268899999999999986 37899999988321
Q ss_pred ----------eEEEEeC------CCCCEEEEEEeCC---CCEEEEEECCCCEEEEEcCCCc
Q psy4876 546 ----------KVAELHG------HSARVLNLAMSPD---ETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 546 ----------~~~~l~~------h~~~V~~l~~spd---g~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
..+.+.- ...+|..+.|||- +..|++-..|+.||+||+....
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 1223321 2567999999994 5689999999999999999733
No 334
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.16 E-value=1.2 Score=44.28 Aligned_cols=214 Identities=7% Similarity=-0.058 Sum_probs=122.1
Q ss_pred EEEccCCCEEEEEeCC--------------CeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEe----cCCeEEEE
Q psy4876 341 VAWIQEGYMLGVGTSL--------------GTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGS----RCGNIVHH 402 (609)
Q Consensus 341 v~~spdg~~Lasgs~d--------------g~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs----~dg~I~iw 402 (609)
--++++|.+|+.+... ..|+..++..++...... .....++.++..|+-.. ....|..-
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~ 134 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DPCIYASLIGNYIYYLHYDTQTATSLYRI 134 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SCEEEEEEETTEEEEEEESSSSCEEEEEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CCccEEEEeCCEEEEEeecCCCCceEEEE
Confidence 4557889888877543 467777877665333322 22335566777777665 33456666
Q ss_pred EcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 403 DVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 403 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
++... ....+..+.. ..|+++++.|+..+. ...|++.++..+ .....+. +... ..++|++..+
T Consensus 135 ~~dGs--~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~------~~~~l~~---~~~~-~~~~P~g~~i 198 (302)
T 3s25_A 135 RIDGE--EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ------SEALFYD---CNCY-KPVVLDDTNV 198 (302)
T ss_dssp ETTSC--CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT------EEEEEEC---SCEE-EEEEEETTEE
T ss_pred ECCCC--CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC------CEEEEeC---CCcc-ceeeecCCEE
Confidence 66643 3344444432 456788888887665 578888888765 2222222 2222 3456888888
Q ss_pred EEEEeccCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEE
Q psy4876 482 LASGGGTADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLA 561 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~ 561 (609)
+.+..+ ....|..-++..+. ...+. ...+ ..|+|++..|+.+.....+.|..-++..........+ .+. .
T Consensus 199 y~t~~~-~~~~I~~~~ldG~~-~~~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~---~~~--~ 268 (302)
T 3s25_A 199 YYMDVN-RDNAIVHVNINNPN-PVVLT-EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG---EFC--N 268 (302)
T ss_dssp EEEEGG-GTTEEEEECSSSCC-CEECS-CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES---CEE--E
T ss_pred EEEEcC-CCcEEEEEECCCCC-eEEEe-CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC---ccc--e
Confidence 777531 23567777776544 33332 2333 3488899999876433456788877765433333332 233 3
Q ss_pred EeCCCCEEEEEE-CCCCEEEEEc
Q psy4876 562 MSPDETTVLSAG-ADETLRLWKI 583 (609)
Q Consensus 562 ~spdg~~L~s~s-~Dg~I~iWdl 583 (609)
+++.+.+|+-.. ..+.|..-++
T Consensus 269 i~i~~d~Iy~td~~~~~i~~~~~ 291 (302)
T 3s25_A 269 INVTSQYVYFTDFVSNKEYCTST 291 (302)
T ss_dssp EEECSSEEEEEETTTCCEEEEES
T ss_pred EEEeCCEEEEEECCCCeEEEEEC
Confidence 455666776555 3345443343
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.60 E-value=0.12 Score=52.64 Aligned_cols=232 Identities=12% Similarity=0.026 Sum_probs=110.9
Q ss_pred CCCEEEEEeC-CCeEEEEeCCC-CeeEEEe---c-CCCCceEEEEecCCEEEEEec-C---------CeEEEEEcCCCCe
Q psy4876 346 EGYMLGVGTS-LGTVQLWDVSA-KKKCRTM---D-GHDVRVGALAWNTYILSSGSR-C---------GNIVHHDVRSRDH 409 (609)
Q Consensus 346 dg~~Lasgs~-dg~I~iwd~~~-~~~~~~l---~-~h~~~V~~l~~~~~~L~sgs~-d---------g~I~iwd~~~~~~ 409 (609)
++..++.|+. ...+.+||..+ ......+ . .......++..++.+++.|+. + ..+.+||+.+..
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~- 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS- 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE-
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc-
Confidence 5666666654 34688999864 1222222 2 122233445557888888876 2 358889988753
Q ss_pred eEEEEcc---CCCCeEEEEEccCCCEEEEEeCC---------------------------------------CcEEEEeC
Q psy4876 410 KVALLQN---HTQEVCGLKWSPDGRYLASGGND---------------------------------------NLLNIWSG 447 (609)
Q Consensus 410 ~~~~~~~---h~~~V~~l~~spdg~~lasgs~D---------------------------------------g~I~iwd~ 447 (609)
-..+.. ....-.+++. .++++++.|+.+ ..+.+||.
T Consensus 98 -W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 -WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp -EEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred -EEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 112211 1111112222 567788888764 57899998
Q ss_pred CCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEecc----CCCeEEEEEC--CCCceeE--EEcCCC-CeEEEEE
Q psy4876 448 VPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGT----ADRHIYFWNV--SSGACLD--SIDTKS-QVCALLW 518 (609)
Q Consensus 448 ~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs----~Dg~I~iwd~--~t~~~~~--~~~~~~-~v~sl~~ 518 (609)
.+..- ..+..+......-.+++.. +..+++.||.. ....+.+||+ .+.+-.. .+.... .....+.
T Consensus 176 ~~~~W----~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~ 249 (357)
T 2uvk_A 176 STQQW----SYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAG 249 (357)
T ss_dssp TTTEE----EEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEE
T ss_pred CCCcE----EECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEE
Confidence 87521 2222222111110122222 34677776521 1345777887 3332211 111111 1111122
Q ss_pred cCCCCeEEEEEecCC---------------------CeEEEEECCCC--ceEEEEeCCCCCEEEEEEeCCCCEEEEEECC
Q psy4876 519 NSDYKELVSAHGFAQ---------------------NQLIIWKYPSL--VKVAELHGHSARVLNLAMSPDETTVLSAGAD 575 (609)
Q Consensus 519 s~~g~~l~~~sG~~d---------------------g~I~Iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~L~s~s~D 575 (609)
..+++ |++..|... ..+.+||..+. ..+..+...... +.+...++++++.||.+
T Consensus 250 ~~~~~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 250 ISNDS-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EETTE-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEEC
T ss_pred EECCE-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeC
Confidence 22344 444334211 25788988654 444444322222 22233478888888865
Q ss_pred C------CEEEEEcCCCccc
Q psy4876 576 E------TLRLWKIFEKVKS 589 (609)
Q Consensus 576 g------~I~iWdl~~~~~~ 589 (609)
+ .|.++++.+++..
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCE
T ss_pred CCCCEeeeEEEEEEcCcEeE
Confidence 3 3445577665543
No 336
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.52 E-value=0.48 Score=48.19 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=92.8
Q ss_pred EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee----cCCcccEEEEEEcCC---CCcEEEEE
Q psy4876 413 LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL----SRHQAAVKAIAWCPW---SPNVLASG 485 (609)
Q Consensus 413 ~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~----~~h~~~V~~l~~sp~---~~~llasg 485 (609)
.+...-.....|+|.|||.++++--..|.|++++...+.. ..+..+ .........|+++|+ +..++++-
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~----~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK----TELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE----eeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 3333445678999999999777665489999998665521 122222 234567899999995 34565542
Q ss_pred eccCCCeEEEEECCCCc----------ee-EEEcC--CCCeEEEEEcCCCCeEEEEEec------------CCCeEEEEE
Q psy4876 486 GGTADRHIYFWNVSSGA----------CL-DSIDT--KSQVCALLWNSDYKELVSAHGF------------AQNQLIIWK 540 (609)
Q Consensus 486 gGs~Dg~I~iwd~~t~~----------~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~------------~dg~I~Iwd 540 (609)
....+..|.-|.+..+. .+ ..+.. ......|.|.|+|.+.++. |. ..|.|.-++
T Consensus 102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~ 180 (347)
T 3das_A 102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMT 180 (347)
T ss_dssp ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEEC
T ss_pred ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEe
Confidence 21245667777665421 11 12221 2245679999999755553 32 135555555
Q ss_pred CCCC---------ceEEEEeCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEc
Q psy4876 541 YPSL---------VKVAELHGHSARVLNLAMSPDETTVLSA-GADETLRLWKI 583 (609)
Q Consensus 541 ~~~~---------~~~~~l~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl 583 (609)
.... ..+.. .+|.. ...++|+|+|.+.++- +.|+.=.|-.+
T Consensus 181 ~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i 231 (347)
T 3das_A 181 PDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAI 231 (347)
T ss_dssp TTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred CCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEE
Confidence 4321 11211 35544 4689999988765543 33433333333
No 337
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.36 E-value=0.43 Score=48.69 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=81.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceE----eecCCcccEEEEEEcCC---CCcEEEEEecc-C-
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIH----SLSRHQAAVKAIAWCPW---SPNVLASGGGT-A- 489 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~l~~sp~---~~~llasggGs-~- 489 (609)
.....|+|.|+|++|+++...|.|++++.... .. ..+. ...........|+|+|+ +..++++.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~-~~---~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKG-LS---APLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTTE-EC---CCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCc-ee---eEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 35678999999983444566799999985422 10 1111 11223456789999996 55666654210 1
Q ss_pred ---CCeEEEEECCCC--c--eeEEE-c-------CCCCeEEEEEcCCCCeEEEEEecC------------CCeEEEEECC
Q psy4876 490 ---DRHIYFWNVSSG--A--CLDSI-D-------TKSQVCALLWNSDYKELVSAHGFA------------QNQLIIWKYP 542 (609)
Q Consensus 490 ---Dg~I~iwd~~t~--~--~~~~~-~-------~~~~v~sl~~s~~g~~l~~~sG~~------------dg~I~Iwd~~ 542 (609)
...|..|++..+ . ....+ . .......++|.|+|. |+++.|.. .+.|.-++..
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235777776533 1 11111 1 112346799999994 55544432 2467777754
Q ss_pred CC--------------ceEEEEeCCCCCEEEEEEeC-CCCEEEE
Q psy4876 543 SL--------------VKVAELHGHSARVLNLAMSP-DETTVLS 571 (609)
Q Consensus 543 ~~--------------~~~~~l~~h~~~V~~l~~sp-dg~~L~s 571 (609)
.. ..+.. .+|. ....++|+| +|.++++
T Consensus 173 G~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence 22 11111 2443 368899999 5654443
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.28 E-value=0.43 Score=53.54 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=103.7
Q ss_pred cCCCEEEEEeCC----CeEEEEeCCCCeeEEEe--------cCCCCceEEEEe--cCCEEEEEecCC------eEEEEEc
Q psy4876 345 QEGYMLGVGTSL----GTVQLWDVSAKKKCRTM--------DGHDVRVGALAW--NTYILSSGSRCG------NIVHHDV 404 (609)
Q Consensus 345 pdg~~Lasgs~d----g~I~iwd~~~~~~~~~l--------~~h~~~V~~l~~--~~~~L~sgs~dg------~I~iwd~ 404 (609)
-++..++.|+.+ ..+.+||..+++-...- .........+.+ ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456677777653 36889998876533322 112233455666 778888887543 4788888
Q ss_pred CCCCeeEEEEcc--CCCCeEEEEEccCCCEEEEEeCCC--cEEEEeCCCCCCCCCccceEe---ecCCcccEEEEEEcCC
Q psy4876 405 RSRDHKVALLQN--HTQEVCGLKWSPDGRYLASGGNDN--LLNIWSGVPGQHTFSTQPIHS---LSRHQAAVKAIAWCPW 477 (609)
Q Consensus 405 ~~~~~~~~~~~~--h~~~V~~l~~spdg~~lasgs~Dg--~I~iwd~~~~~~~~~~~~~~~---~~~h~~~V~~l~~sp~ 477 (609)
.+.. -..+.. ....-.+++...++.+++.|+.++ .+.+||..+..- ..+.. +........++.+...
T Consensus 476 ~t~~--W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W----~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF----KDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp TTTE--EEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEE----EECCCSSGGGGSCCBSCEEEEETT
T ss_pred CCCc--EEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCce----EEccCCCCCCCcccceeEEEEeCC
Confidence 8752 111111 111112233324788888888655 699999987521 11111 1111112233555554
Q ss_pred CCcEEEEEeccCC-----CeEEEEECCCCce-----eEEE-c--CCC-CeEEEEEcCCCCeEEEEEec-------CCCeE
Q psy4876 478 SPNVLASGGGTAD-----RHIYFWNVSSGAC-----LDSI-D--TKS-QVCALLWNSDYKELVSAHGF-------AQNQL 536 (609)
Q Consensus 478 ~~~llasggGs~D-----g~I~iwd~~t~~~-----~~~~-~--~~~-~v~sl~~s~~g~~l~~~sG~-------~dg~I 536 (609)
...+++.||...+ ..+.+||+.+..- -..+ . ... .-.+++...+++.++. .|. ..+.|
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV-GGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE-CCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE-CCccCCCCCCCCCeE
Confidence 3568888763223 5689999987761 1122 1 111 1112222232444444 343 24569
Q ss_pred EEEECCCCce
Q psy4876 537 IIWKYPSLVK 546 (609)
Q Consensus 537 ~Iwd~~~~~~ 546 (609)
.+||..+.+-
T Consensus 629 ~~yd~~t~~W 638 (695)
T 2zwa_A 629 ISLDPLSETL 638 (695)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCeE
Confidence 9999887653
No 339
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.19 E-value=1.2 Score=47.19 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecC------CcccEEEEEEcCC---CCcEEEEEecc
Q psy4876 418 TQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSR------HQAAVKAIAWCPW---SPNVLASGGGT 488 (609)
Q Consensus 418 ~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~l~~sp~---~~~llasggGs 488 (609)
-....+|+|.|+|+++++-...+.|++++...+.. ..+..+.. .......|+|+|+ +..|+++-...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~----~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV----KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE----EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE----eEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 34677999999999777654445788888654421 22222221 3456789999996 55666654210
Q ss_pred -----C-----CCeEEEEECCCC--c-----ee-EEEcC--CCCeEEEEEcCCCCeEEEEEecC----------------
Q psy4876 489 -----A-----DRHIYFWNVSSG--A-----CL-DSIDT--KSQVCALLWNSDYKELVSAHGFA---------------- 532 (609)
Q Consensus 489 -----~-----Dg~I~iwd~~t~--~-----~~-~~~~~--~~~v~sl~~s~~g~~l~~~sG~~---------------- 532 (609)
. ...|.-|++..+ . .+ ..+.. ......|+|.++|.+.++. |..
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~-Gd~~~~~~~~~~~~~~~~~ 180 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI-GDQGRNQLAYLFLPNQAQH 180 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE-CCTTTTSGGGTTSCCCTTC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE-CCCCCCCcccccccccccc
Confidence 0 235666665432 1 11 11221 2357899999999766554 421
Q ss_pred ---------------CCeEEEEECCCCc-----------eEEEE-eCCCCCEEEEEEeCCCCEEEEE-ECCCCEEEEEcC
Q psy4876 533 ---------------QNQLIIWKYPSLV-----------KVAEL-HGHSARVLNLAMSPDETTVLSA-GADETLRLWKIF 584 (609)
Q Consensus 533 ---------------dg~I~Iwd~~~~~-----------~~~~l-~~h~~~V~~l~~spdg~~L~s~-s~Dg~I~iWdl~ 584 (609)
.|.|.-++.. +. ....+ .+|. ....++|+|+|.+.++- +.|+.-.|..+.
T Consensus 181 ~p~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~ 258 (454)
T 1cru_A 181 TPTQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIV 258 (454)
T ss_dssp CCCHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECC
T ss_pred ccccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEec
Confidence 1445444433 22 11122 3453 46899999988755543 445444555444
Q ss_pred C
Q psy4876 585 E 585 (609)
Q Consensus 585 ~ 585 (609)
.
T Consensus 259 ~ 259 (454)
T 1cru_A 259 K 259 (454)
T ss_dssp T
T ss_pred C
Confidence 3
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.18 E-value=0.64 Score=46.96 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=69.9
Q ss_pred CeEEEEeCCCCee--EEEecCC-CCceEEEEecCCEEEEEec------CCeEEEEEcCCCCeeEEEEccC---CCCeEEE
Q psy4876 357 GTVQLWDVSAKKK--CRTMDGH-DVRVGALAWNTYILSSGSR------CGNIVHHDVRSRDHKVALLQNH---TQEVCGL 424 (609)
Q Consensus 357 g~I~iwd~~~~~~--~~~l~~h-~~~V~~l~~~~~~L~sgs~------dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l 424 (609)
..+.+||..+.+- +..+... ......+.+++.+++.|+. ...+.+||++.....-..+... .......
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~ 247 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGF 247 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCE
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccce
Confidence 4789999987643 3333321 1213444557777777764 3457778772221122222111 1111111
Q ss_pred EEccCCCEEEEEeCC----------------------CcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 425 KWSPDGRYLASGGND----------------------NLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 425 ~~spdg~~lasgs~D----------------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
+...++.+++.|+.+ ..+.+||+.+..- ..+..+........++.+ +..++
T Consensus 248 ~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~---~~~i~ 320 (357)
T 2uvk_A 248 AGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW----DKSGELSQGRAYGVSLPW---NNSLL 320 (357)
T ss_dssp EEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C----EEEEECSSCCBSSEEEEE---TTEEE
T ss_pred EEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce----eeCCCCCCCcccceeEEe---CCEEE
Confidence 223356777777632 2578899886532 333333322222223333 34677
Q ss_pred EEEeccCC----CeEEEEECCCCceeEEE
Q psy4876 483 ASGGGTAD----RHIYFWNVSSGACLDSI 507 (609)
Q Consensus 483 asggGs~D----g~I~iwd~~t~~~~~~~ 507 (609)
+.||.+.+ ..|.++++++++.+...
T Consensus 321 v~GG~~~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 321 IIGGETAGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp EEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred EEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence 77763222 34666788877765443
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.10 E-value=4.3 Score=43.62 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=133.6
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEecCCC---------------------------CceEEEEe-----cCCEEEEEe-cC
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKCRTMDGHD---------------------------VRVGALAW-----NTYILSSGS-RC 396 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~~~l~~h~---------------------------~~V~~l~~-----~~~~L~sgs-~d 396 (609)
+.+|+..|.|+|+-+.+++.+..+.... ..-..+++ +|++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5578888999999999998887764210 11123444 467777766 45
Q ss_pred CeEEEEEcCCCCeeEEEEccCCCCeEEEEEc--cCCCEEEEEeCC-------CcE---------EE---EeCCCCCCCCC
Q psy4876 397 GNIVHHDVRSRDHKVALLQNHTQEVCGLKWS--PDGRYLASGGND-------NLL---------NI---WSGVPGQHTFS 455 (609)
Q Consensus 397 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--pdg~~lasgs~D-------g~I---------~i---wd~~~~~~~~~ 455 (609)
..|-..+++........-......+.++.|- |+-.|++.+++. |.. .+ .|..+.
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm----- 227 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETM----- 227 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTC-----
T ss_pred cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCcc-----
Confidence 6788888887642222223456778888886 677888888752 221 00 111111
Q ss_pred ccceEeecCCcccEEEEEEcCCCCcEEEEEeccC------------CCe-------------------------EEEEEC
Q psy4876 456 TQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTA------------DRH-------------------------IYFWNV 498 (609)
Q Consensus 456 ~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~------------Dg~-------------------------I~iwd~ 498 (609)
+...++.- .+....+...+++.+.+.++-.++ -.. +.+.|.
T Consensus 228 -~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~ 305 (638)
T 3sbq_A 228 -EMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDG 305 (638)
T ss_dssp -SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred -EEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcc
Confidence 00111000 111223344566666666553111 112 334444
Q ss_pred CC----C-ceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------------eEEEEeCCCCCEEEE
Q psy4876 499 SS----G-ACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV-------------KVAELHGHSARVLNL 560 (609)
Q Consensus 499 ~t----~-~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~-------------~~~~l~~h~~~V~~l 560 (609)
+. + ..+..+........+..+|||++++++ |--+.++.|+|+.... .+.+.. -.-..++.
T Consensus 306 ~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt 383 (638)
T 3sbq_A 306 RKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHT 383 (638)
T ss_dssp SCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEE
T ss_pred ccccccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEE
Confidence 33 1 122223333445678899999999987 6688999999986321 123333 23457899
Q ss_pred EEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 561 AMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 561 ~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
+|.++|....|.--|..|.-|++...
T Consensus 384 ~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 384 TFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred EECCCCceEeeeeecceEEEEeccHH
Confidence 99999965556668999999999653
No 342
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.6 Score=47.30 Aligned_cols=109 Identities=12% Similarity=0.021 Sum_probs=68.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEe----cCCEEEEE--ecCCeEEEEEcCCCCeeEEEEcc----
Q psy4876 348 YMLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAW----NTYILSSG--SRCGNIVHHDVRSRDHKVALLQN---- 416 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~----~~~~L~sg--s~dg~I~iwd~~~~~~~~~~~~~---- 416 (609)
..+++++.||.|.-+|..+|+.+-.+... ..++....- .+..++.+ +.||.|..++..++. ....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~-~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL-QKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-EEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-EEeeeccccce
Confidence 47888999999999999999998888754 122222211 12234444 589999999988763 2222221
Q ss_pred CCCCeEE---EEE-c----cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec
Q psy4876 417 HTQEVCG---LKW-S----PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS 463 (609)
Q Consensus 417 h~~~V~~---l~~-s----pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 463 (609)
...++.. ..+ . -.+..+++|+.+|.+...|+.+| +.+..+.
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG------~~~W~~~ 138 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG------EIISAFG 138 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC------CEEEEES
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC------cEEEEEe
Confidence 1122221 000 0 13557889999999999999999 5555554
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.54 E-value=1 Score=45.67 Aligned_cols=152 Identities=8% Similarity=-0.003 Sum_probs=79.4
Q ss_pred eCCCeEEEEeCCCCeeEEEecC----CCCceEE---EEe-------cCCEEEEEecCCeEEEEEcCCCCeeEEEEccCC-
Q psy4876 354 TSLGTVQLWDVSAKKKCRTMDG----HDVRVGA---LAW-------NTYILSSGSRCGNIVHHDVRSRDHKVALLQNHT- 418 (609)
Q Consensus 354 s~dg~I~iwd~~~~~~~~~l~~----h~~~V~~---l~~-------~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~- 418 (609)
+.||.|..++..+|.....+.. ...++.. ... .+..+++|+.+|.+...|..+++ .+..+....
T Consensus 64 ~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~-~~W~~~~~~~ 142 (339)
T 2be1_A 64 FGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE-IISAFGPGSK 142 (339)
T ss_dssp STTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC-EEEEESTTCB
T ss_pred CCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc-EEEEEecCCC
Confidence 6899999999988755443321 1222221 001 46788899999999999999985 566554321
Q ss_pred -C-----CeEEEEEc-----cCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCccc--EE-EEEEcCCCCcEEEE
Q psy4876 419 -Q-----EVCGLKWS-----PDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAA--VK-AIAWCPWSPNVLAS 484 (609)
Q Consensus 419 -~-----~V~~l~~s-----pdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~-~l~~sp~~~~llas 484 (609)
. ...|.... -.+..++.|..+..|.+.+ +++. .+... .......... +. .-..+.++.. +++
T Consensus 143 ~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~-~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~ 218 (339)
T 2be1_A 143 NGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVT-YSTWQQNVLDVPLALQNTFSKDGMC-IAP 218 (339)
T ss_dssp CC--------------------CCEEEEEEEEEECEECC-TTSC-CCCCE-EEEEECCTTTHHHHTTCSSCSSSCC-EEE
T ss_pred cccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEe-cccccccccccccccccccccCCcE-EEE
Confidence 1 01111111 1235677777777777766 3442 11110 1111111000 00 0000123433 333
Q ss_pred EeccCCCeEEEEECCCCceeE-EEcCCCCe
Q psy4876 485 GGGTADRHIYFWNVSSGACLD-SIDTKSQV 513 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t~~~~~-~~~~~~~v 513 (609)
+.||.|.-+|..+|..+. .....+++
T Consensus 219 ---~~dg~v~A~d~~~G~~~W~~~~l~sPv 245 (339)
T 2be1_A 219 ---FRDKSLLASDLDFRIARWVSPTFPGII 245 (339)
T ss_dssp ---ETTTEEEEECSTTCCEEEECCCCSSCE
T ss_pred ---CCCCEEEEEECCCCcEEEEeecCCCCe
Confidence 379999999999998776 44444443
No 344
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=94.45 E-value=11 Score=44.78 Aligned_cols=223 Identities=15% Similarity=0.106 Sum_probs=121.5
Q ss_pred EEEEEeCCCeEEEEeCCCCeeEEEecCC-CCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEc
Q psy4876 349 MLGVGTSLGTVQLWDVSAKKKCRTMDGH-DVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWS 427 (609)
Q Consensus 349 ~Lasgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 427 (609)
.++=.+. ..|++.+......+..+... ...|...+.++..++.++ ++.|.++.+..+.-....-..-..+|.|+++.
T Consensus 485 ~ivQVt~-~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~ 562 (1158)
T 3ei3_A 485 QLIQITS-ASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDIT 562 (1158)
T ss_dssp EEEEEES-SCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECC
T ss_pred eEEEEec-CEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEee
Confidence 4443444 34778887665666666543 346888888777777775 67888888875421111112245689999998
Q ss_pred cC------CCEEEEEeC-CCcEEEEeCCCCCCCCCccceEeecC-CcccEEEEEEcCC-CCcEEEEEeccCCCeEEEEEC
Q psy4876 428 PD------GRYLASGGN-DNLLNIWSGVPGQHTFSTQPIHSLSR-HQAAVKAIAWCPW-SPNVLASGGGTADRHIYFWNV 498 (609)
Q Consensus 428 pd------g~~lasgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~-~~~llasggGs~Dg~I~iwd~ 498 (609)
+. +.++|+|.. |++|+|+++... +.+....- ......++.+... +...|..| ..||.+..+.+
T Consensus 563 ~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l------~~~~~~~L~~~~~p~si~l~~~~~~~~L~ig--l~dG~l~~~~~ 634 (1158)
T 3ei3_A 563 PLGDSNGLSPLCAIGLWTDISARILKLPSF------ELLHKEMLGGEIIPRSILMTTFESSHYLLCA--LGDGALFYFGL 634 (1158)
T ss_dssp CCSSSTTCCSEEEEEETTTTEEEEEETTTC------CEEEEEECCSSCCEEEEEEEEETTEEEEEEE--ETTSEEEEEEE
T ss_pred cCCCCcccccEEEEEECCCCEEEEEECCCC------CeEEEEECCCCCCCcEEEEEEeCCCcEEEEE--eCCCeEEEEEE
Confidence 63 468999996 999999999865 33322211 1123444444322 22334444 47898765554
Q ss_pred --CCCceeEE--Ec-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEE-EEEEeCC--CCEEE
Q psy4876 499 --SSGACLDS--ID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVL-NLAMSPD--ETTVL 570 (609)
Q Consensus 499 --~t~~~~~~--~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~-~l~~spd--g~~L~ 570 (609)
.+|..... .. +..++.-..+...+..-+.++| +.-..+|.....-....+ ....+. ...|+.. ..-++
T Consensus 635 d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s--~rp~liy~~~~~l~~s~l--~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 635 NIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS--DRPTVIYSSNHKLVFSNV--NLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp CTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES--SSCEEEEESSSSEEEEEB--SSSCCCEEEEECCSSSTTEEE
T ss_pred cCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC--CCCEEEEEcCCceEEecc--ChHHhceEeccCcccCCCcEE
Confidence 45655432 22 2234544445555555444443 444445544322111111 112332 3335432 12344
Q ss_pred EEECCCCEEEEEcCCC
Q psy4876 571 SAGADETLRLWKIFEK 586 (609)
Q Consensus 571 s~s~Dg~I~iWdl~~~ 586 (609)
.+ .++.++|..+..-
T Consensus 711 ~~-~~~~LrI~~i~~~ 725 (1158)
T 3ei3_A 711 LA-NNSTLTIGTIDEI 725 (1158)
T ss_dssp EE-CSSCEEEEEECCS
T ss_pred EE-cCCceEEEEeccc
Confidence 33 3566998887544
No 345
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.43 E-value=3.4 Score=38.98 Aligned_cols=154 Identities=10% Similarity=0.020 Sum_probs=89.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee-cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEE
Q psy4876 419 QEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL-SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWN 497 (609)
Q Consensus 419 ~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd 497 (609)
..+..++|+|+|.+.++ .+|.++-.+..+.....-...-..+ ...-....++.|.|+| .|.++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G-~LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNG-YLYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTS-CEEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCC-CEEEe----CCCEEEEeC
Confidence 46779999999987777 5677777776543110000001111 0011124789999988 45555 269998888
Q ss_pred CCCCcee------EEEcC-C-CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------eEEEE-eCCCCCEEEEEE
Q psy4876 498 VSSGACL------DSIDT-K-SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------KVAEL-HGHSARVLNLAM 562 (609)
Q Consensus 498 ~~t~~~~------~~~~~-~-~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------~~~~l-~~h~~~V~~l~~ 562 (609)
-.+...- ..+-. . ..+..|.+.|+|.+.++ . ++.++-...++.. ....+ ...-.....+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav--~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV--H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 6432211 11111 1 36799999999998877 2 6666555444322 11122 133345566789
Q ss_pred eCCCCEEEEEECCCCEEEEEcCCCc
Q psy4876 563 SPDETTVLSAGADETLRLWKIFEKV 587 (609)
Q Consensus 563 spdg~~L~s~s~Dg~I~iWdl~~~~ 587 (609)
.++|.+.+.. ++ +||......
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~~p~ 210 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDYPPS 210 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEESCCC
T ss_pred CCCCcEEEEe--CC--eEEecCCcc
Confidence 9999877666 66 666665543
No 346
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.30 E-value=0.3 Score=54.83 Aligned_cols=155 Identities=13% Similarity=0.119 Sum_probs=84.7
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeEE--EecCCCCceEEEEe-cCCEEEEEecCC--eEEEEEcCCCCeeEEEE
Q psy4876 346 EGYMLGVGTSL------GTVQLWDVSAKKKCR--TMDGHDVRVGALAW-NTYILSSGSRCG--NIVHHDVRSRDHKVALL 414 (609)
Q Consensus 346 dg~~Lasgs~d------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~-~~~~L~sgs~dg--~I~iwd~~~~~~~~~~~ 414 (609)
++..++.|+.+ ..+.+||..+.+-.. .+......-.++.+ ++.+++.|+.++ .+.+||..+.. -..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~ 528 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDV 528 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEEC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEc
Confidence 67777777654 358899988754322 22222233345554 788888888765 68999998753 2222
Q ss_pred cc------CCCCeEEEEEccC-CCEEEEEeC--C-----CcEEEEeCCCCCC--CCCccceEeec-CCcccEEEEEEcCC
Q psy4876 415 QN------HTQEVCGLKWSPD-GRYLASGGN--D-----NLLNIWSGVPGQH--TFSTQPIHSLS-RHQAAVKAIAWCPW 477 (609)
Q Consensus 415 ~~------h~~~V~~l~~spd-g~~lasgs~--D-----g~I~iwd~~~~~~--~~~~~~~~~~~-~h~~~V~~l~~sp~ 477 (609)
.. ......++.+..+ +.+++.|+. + +.+.+||+.+... ......+.... .......++.+ .+
T Consensus 529 ~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~-~~ 607 (695)
T 2zwa_A 529 TPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI-TP 607 (695)
T ss_dssp CCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE-ET
T ss_pred cCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe-CC
Confidence 11 1122233555554 667777775 2 4589999987631 00011111110 11111223333 22
Q ss_pred CCcEEEEEecc------CCCeEEEEECCCCcee
Q psy4876 478 SPNVLASGGGT------ADRHIYFWNVSSGACL 504 (609)
Q Consensus 478 ~~~llasggGs------~Dg~I~iwd~~t~~~~ 504 (609)
..+++.||.+ ....|.+||+.+.+-.
T Consensus 608 -~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 608 -RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp -TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred -CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 3677777522 2356999999877543
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.17 E-value=1.2 Score=53.14 Aligned_cols=195 Identities=12% Similarity=0.171 Sum_probs=113.7
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec---CCCCeEEEEEccCCC
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE---GNENVCSVAWIQEGY 348 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---h~~~V~~v~~spdg~ 348 (609)
|.--.|-.+..|+.-.+..|+-|++... .....+++.. ....|..-..+++.+
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~------------------------s~P~k~fdR~~~L~~~QIinY~~d~~~k 163 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGE------------------------SQPVKMFDRHSSLAGCQIINYRTDAKQK 163 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCC------------------------CccHHHHhcchhcccCeeEEeeeCCCCC
Confidence 3346787888888888999999999651 1111122111 245677777778887
Q ss_pred EEEEEe-------CCCeEEEEeCCCCeeEEEecCCCCceEEEEecC-----CEEEEEec---CCeEEEEEcCCC--C-ee
Q psy4876 349 MLGVGT-------SLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNT-----YILSSGSR---CGNIVHHDVRSR--D-HK 410 (609)
Q Consensus 349 ~Lasgs-------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~-----~~L~sgs~---dg~I~iwd~~~~--~-~~ 410 (609)
+++..+ -.|.+.+|.++. +.-+.+.||.+....+..+| .+++.+.. .+.++|-++... + ..
T Consensus 164 W~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~ 242 (1630)
T 1xi4_A 164 WLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP 242 (1630)
T ss_pred eEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCC
Confidence 776533 348899999875 44566777776666555532 23333332 268888888543 1 00
Q ss_pred -----EEEEc---cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 411 -----VALLQ---NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 411 -----~~~~~---~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
+..+. .-.+-..++..++.-..+...+.-|.|++||+.++ .++..-.-....|...+-+.....++
T Consensus 243 f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~------~~i~~~ris~~~iF~~~~~~~~~g~~ 316 (1630)
T 1xi4_A 243 FPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG------TCIYMNRISGETIFVTAPHEATAGII 316 (1630)
T ss_pred CccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc------hhhhhccccCCceEEeccCCCCCceE
Confidence 11111 11233456777887778888888999999999999 44444333344444433333333344
Q ss_pred EEEeccCCCeEEEEECCC
Q psy4876 483 ASGGGTADRHIYFWNVSS 500 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t 500 (609)
++. ..|.|.--.+..
T Consensus 317 ~vn---r~G~vl~v~v~~ 331 (1630)
T 1xi4_A 317 GVN---RKGQVLSVCVEE 331 (1630)
T ss_pred EEc---CCceEEEEEEcc
Confidence 432 345444444433
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.76 E-value=0.23 Score=46.94 Aligned_cols=142 Identities=9% Similarity=0.031 Sum_probs=75.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCee------EEEec-CCCCceEEEEec--CCEEEEEecCCeEEEEEcCC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKK------CRTMD-GHDVRVGALAWN--TYILSSGSRCGNIVHHDVRS 406 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~------~~~l~-~h~~~V~~l~~~--~~~L~sgs~dg~I~iwd~~~ 406 (609)
..+.+++|+|+|.+.++ .+|.+.-.+..+... -..+- ..-....++.|+ +.+.++ .||.|+-++-.+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 36779999999987776 668776666544211 11111 011114677775 444444 679998887643
Q ss_pred CCee------EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec-CCcccEEEEEEcCCCC
Q psy4876 407 RDHK------VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS-RHQAAVKAIAWCPWSP 479 (609)
Q Consensus 407 ~~~~------~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~ 479 (609)
.... ...-..--..+..|.+.|+|.+.++. |+.++-+..-......-......+. ..-...+-+.|++++
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G- 193 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG- 193 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS-
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC-
Confidence 2211 11112222578999999999887776 7775443322211000000111111 233344557788877
Q ss_pred cEEEE
Q psy4876 480 NVLAS 484 (609)
Q Consensus 480 ~llas 484 (609)
.|+++
T Consensus 194 ~l~~v 198 (236)
T 1tl2_A 194 TLFGV 198 (236)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 45444
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.88 E-value=5.8 Score=38.74 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=114.2
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEc
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQ 415 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~ 415 (609)
..|..|+.... +.+.-. ||.|..|-......+..-......|..++......+.-. ||.|+.|-.....+.- .-.
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg-~P~ 98 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTT-VPA 98 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTC-CCG
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCC-CCc
Confidence 35666665432 333335 899999976543222211112346777777544333335 9999999765432211 111
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEE
Q psy4876 416 NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYF 495 (609)
Q Consensus 416 ~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~i 495 (609)
.-...|..|+...+ +.+.-. ||.|+.|-..... +. .........|..++.... +.++. + |+.|+.
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~g-----ql-g~~~~~~~~i~~i~~G~~--~~~~l---~-~G~v~~ 163 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDG-----QT-TVPAEAQSGVTALDGGVY--TALAV---K-NGGVIA 163 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTS-----TT-SCCGGGGSSEEEEEECSS--EEEEE---E-TTEEEE
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCC-----cC-CCCccCCCCeEEEEcccC--EEEEE---E-CCEEEE
Confidence 11346777776543 333445 8999999765431 11 001112345666665432 23333 2 788888
Q ss_pred EECCCCceeE-EEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEEeCCCCCEEEEEEeCCCCEEEEEEC
Q psy4876 496 WNVSSGACLD-SIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVKVAELHGHSARVLNLAMSPDETTVLSAGA 574 (609)
Q Consensus 496 wd~~t~~~~~-~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~ 574 (609)
|-......+. .......|..++.......++ .+|.|+.|-......+..-......|..|+-..+.. ++..
T Consensus 164 wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~-- 235 (282)
T 3qhy_B 164 WGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LALK-- 235 (282)
T ss_dssp EECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--
T ss_pred ecCCCCCCCCCceecCCCeEEEEecCCEEEEE-----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--
Confidence 8765322111 111223566665433322221 388899997644322211011123567776554433 3333
Q ss_pred CCCEEEEEcCCCc
Q psy4876 575 DETLRLWKIFEKV 587 (609)
Q Consensus 575 Dg~I~iWdl~~~~ 587 (609)
||.|..|-.....
T Consensus 236 ~g~v~~wG~n~~g 248 (282)
T 3qhy_B 236 NGKVIAWGSSRTA 248 (282)
T ss_dssp TTEEEEESTTCCC
T ss_pred CCEEEEecCCCCc
Confidence 8999999766543
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.06 E-value=12 Score=36.42 Aligned_cols=221 Identities=17% Similarity=0.157 Sum_probs=115.6
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
|..|+......++.. ||.|+.|-.....+. +. .......|..|+.... ..++
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gql---------------------g~-----p~~~~~~i~~ia~G~~-hs~~ 77 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQL---------------------TM-----PAATQSGVDAIAAGNY-HSLA 77 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTT---------------------SC-----CGGGGSCCCEEEECSS-EEEE
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCC---------------------CC-----CccCCCCEEEEEeCCC-EEEE
Confidence 445666666667776 999999987652111 10 0011234666665433 2333
Q ss_pred EEeCCCeEEEEeCCCCeeEEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCC
Q psy4876 352 VGTSLGTVQLWDVSAKKKCRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGR 431 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 431 (609)
. . ||.|..|-......+..-..-...|..++......+.-. ||.|+.|-.....+.- ........|..++...+
T Consensus 78 l-~-~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~-- 151 (282)
T 3qhy_B 78 L-K-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY-- 151 (282)
T ss_dssp E-E-TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--
T ss_pred E-E-CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--
Confidence 3 4 899999976543222111112346888888665555566 9999999765433211 11112345766665433
Q ss_pred EEEEEeCCCcEEEEeCCCCCCCCCccceEeecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCcee-EEEcCC
Q psy4876 432 YLASGGNDNLLNIWSGVPGQHTFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACL-DSIDTK 510 (609)
Q Consensus 432 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~-~~~~~~ 510 (609)
+.+.-. ||.|+.|-........ .+. .-...|..++-..+ +.++. .|+.|+.|=......+ ......
T Consensus 152 ~~~~l~-~G~v~~wG~n~~gqlg--~p~----~~~~~v~~i~~G~~--hs~al----~~G~v~~wG~n~~gqlg~p~~~~ 218 (282)
T 3qhy_B 152 TALAVK-NGGVIAWGDNYFGQTT--VPA----EAQSGVDDVAGGIF--HSLAL----KDGKVIAWGDNRYKQTTVPTEAL 218 (282)
T ss_dssp EEEEEE-TTEEEEEECCTTSTTS--CCG----GGGSSEEEEEECSS--EEEEE----ETTEEEEEECCTTSTTCCCGGGG
T ss_pred EEEEEE-CCEEEEecCCCCCCCC--Cce----ecCCCeEEEEecCC--EEEEE----ECCeEEEEECCCCCCCCCCcccC
Confidence 223334 7999999765431110 111 11245677765443 23333 2888999876532211 111122
Q ss_pred CCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q psy4876 511 SQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL 544 (609)
Q Consensus 511 ~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~ 544 (609)
..|..++-.... .++. . +|.|+.|-....
T Consensus 219 ~~v~~i~~G~~h-~~al--~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 219 SGVSAIASGEWY-SLAL--K--NGKVIAWGSSRT 247 (282)
T ss_dssp SSCCEEEECSSC-EEEE--E--TTEEEEESTTCC
T ss_pred CCceEEEcCCCE-EEEE--E--CCEEEEecCCCC
Confidence 345555543332 2222 2 788888876543
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=83.51 E-value=60 Score=36.06 Aligned_cols=236 Identities=9% Similarity=0.040 Sum_probs=121.3
Q ss_pred eEEEE-EccCCCEEEEEeCC-----CeEEEEeCCCCeeEEE-ec-CCCC------ceEEEEe-cCCEEEEEec-------
Q psy4876 338 VCSVA-WIQEGYMLGVGTSL-----GTVQLWDVSAKKKCRT-MD-GHDV------RVGALAW-NTYILSSGSR------- 395 (609)
Q Consensus 338 V~~v~-~spdg~~Lasgs~d-----g~I~iwd~~~~~~~~~-l~-~h~~------~V~~l~~-~~~~L~sgs~------- 395 (609)
...+. ++|++++++.+-+. ..|+++|+.+++.+.. +. .-.. ....++| +.+.++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~ 210 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEIT 210 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcC
Confidence 34455 78999887775332 3799999999886631 11 0000 1134577 4454444321
Q ss_pred ----CCeEEEEEcCCCCe-eEEEEccCCCC-eEEEEEccCCCE-----EEEEeCC---CcEEEEeCCCCCCCCCccceEe
Q psy4876 396 ----CGNIVHHDVRSRDH-KVALLQNHTQE-VCGLKWSPDGRY-----LASGGND---NLLNIWSGVPGQHTFSTQPIHS 461 (609)
Q Consensus 396 ----dg~I~iwd~~~~~~-~~~~~~~h~~~-V~~l~~spdg~~-----lasgs~D---g~I~iwd~~~~~~~~~~~~~~~ 461 (609)
...|+.|.+-+... -...+.+.... -.+...++++++ +++.+.+ ..+++.|..... ..+..
T Consensus 211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 285 (711)
T 4hvt_A 211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN-----LKLQK 285 (711)
T ss_dssp TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS-----CEEEE
T ss_pred cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC-----CcceE
Confidence 24588888776531 23334333333 334556677662 4444422 456777765421 11222
Q ss_pred ecCCcccEEEEEEcCCCCcEEEEEe--------ccCCCeEEEEECCCCc-------eeEE-EcCC--CCeEEEEEcCCCC
Q psy4876 462 LSRHQAAVKAIAWCPWSPNVLASGG--------GTADRHIYFWNVSSGA-------CLDS-IDTK--SQVCALLWNSDYK 523 (609)
Q Consensus 462 ~~~h~~~V~~l~~sp~~~~llasgg--------Gs~Dg~I~iwd~~t~~-------~~~~-~~~~--~~v~sl~~s~~g~ 523 (609)
+...... .+..+..+ .+++... +...+.|...|+.++. .... +... ..+..+.|..+ .
T Consensus 286 l~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 361 (711)
T 4hvt_A 286 INMPSDA--TLQGSFKE-YVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-R 361 (711)
T ss_dssp CCSCTTC--EEEEEETT-EEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-C
T ss_pred eecCCcc--eEeeeECC-EEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-E
Confidence 3222221 12334444 4444221 0136778999987642 2222 3332 36778888876 3
Q ss_pred eEEEEEecCCC--eEEEEECCCCc-eEEE-EeCC-CCCEEEEEEeCCCC-EEEEEEC---CCCEEEEEcC
Q psy4876 524 ELVSAHGFAQN--QLIIWKYPSLV-KVAE-LHGH-SARVLNLAMSPDET-TVLSAGA---DETLRLWKIF 584 (609)
Q Consensus 524 ~l~~~sG~~dg--~I~Iwd~~~~~-~~~~-l~~h-~~~V~~l~~spdg~-~L~s~s~---Dg~I~iWdl~ 584 (609)
.+++.. .++ .|.+++..++. .+.. +... .+.|..+.+++++. ++++.+. -+.+..+|+.
T Consensus 362 l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 362 VFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 444433 344 57777766664 2223 2211 24566666777765 4444443 2567777765
No 352
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=81.08 E-value=50 Score=33.44 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=129.2
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
+..|+......++...||.|+.|-.....+... +. .........+..+ ....+..++.+....+.+
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~-------g~------~~~~~~p~~v~~~-~~~~~~~v~i~~G~~h~~ 120 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGI-------GG------TESVSTPTLLESI-QHVFIKKVAVNSGGKHCL 120 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSS-------SS------SCCEEEEEECGGG-TTSCEEEEEECTTCSEEE
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCC-------CC------cCCccCCEEcccc-cCCceeEEEECcCCCeEE
Confidence 444666666688899999999997654211000 00 0000011111111 334566677777677777
Q ss_pred EEeCCCeEEEEeCCCC-----------eeEEEecC-CCCceEEEEecCCEEEEEecCCeEEEEEcCCCC---------e-
Q psy4876 352 VGTSLGTVQLWDVSAK-----------KKCRTMDG-HDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD---------H- 409 (609)
Q Consensus 352 sgs~dg~I~iwd~~~~-----------~~~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~---------~- 409 (609)
+-+.||.|..|-.... .....+.. ....|..++......++...+|.|+.|-..... .
T Consensus 121 al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 200 (389)
T 3kci_A 121 ALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL 200 (389)
T ss_dssp EEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEE
T ss_pred EEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccc
Confidence 7888999999965321 11122222 223677888877777778889999999653211 0
Q ss_pred eEEEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCC------CCCccceEeecCCcccEEEEEEcCCCCcEE
Q psy4876 410 KVALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQH------TFSTQPIHSLSRHQAAVKAIAWCPWSPNVL 482 (609)
Q Consensus 410 ~~~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~~ll 482 (609)
....+. .....|..++......+.+.-..||.|+.|-...... .....+...-......|..|+.... +.+
T Consensus 201 ~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~ 278 (389)
T 3kci_A 201 KPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSV 278 (389)
T ss_dssp EEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEE
T ss_pred cceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEE
Confidence 111111 1234566666654335666677899999996542100 0000111111111224666665432 333
Q ss_pred EEEeccCCCeEEEEECCCCc-----------eeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q psy4876 483 ASGGGTADRHIYFWNVSSGA-----------CLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPS 543 (609)
Q Consensus 483 asggGs~Dg~I~iwd~~t~~-----------~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~ 543 (609)
+. +.||.|+.|=..... ....+.. ...|..++..... .++.. .+|.|+.|-...
T Consensus 279 al---t~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h--~~al~--~~G~v~~wG~n~ 345 (389)
T 3kci_A 279 AL---TKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLH--CVCCT--EDGEVYTWGDND 345 (389)
T ss_dssp EE---ETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSE--EEEEE--TTCCEEEEECCT
T ss_pred EE---eCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCe--EEEEC--CCCCEEEeeCCC
Confidence 33 268999999754211 0111111 1245555543332 22222 788999997643
No 353
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.08 E-value=27 Score=40.40 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=27.7
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
.+.+++..++..++++-+.|+++++|++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 4677788888889999999999999999988
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.64 E-value=47 Score=34.83 Aligned_cols=107 Identities=7% Similarity=0.013 Sum_probs=63.2
Q ss_pred ccEEEEEEcCCCC-cEEEEEeccCCCeEEEEECCCC---ceeEEEc----C------CCCeEEEEEcCC---CCeEEEEE
Q psy4876 467 AAVKAIAWCPWSP-NVLASGGGTADRHIYFWNVSSG---ACLDSID----T------KSQVCALLWNSD---YKELVSAH 529 (609)
Q Consensus 467 ~~V~~l~~sp~~~-~llasggGs~Dg~I~iwd~~t~---~~~~~~~----~------~~~v~sl~~s~~---g~~l~~~s 529 (609)
.....|+|.|++. .++++- ..|.|++++.... ..+..+. . ...+..|+|+|+ ..+|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3457999999985 577764 6899999975422 1222221 1 246889999997 33444432
Q ss_pred ec-CC----------CeEEEEECCC----------CceEEEEe--CCCCCEEEEEEeCCCCEEEEEECCC
Q psy4876 530 GF-AQ----------NQLIIWKYPS----------LVKVAELH--GHSARVLNLAMSPDETTVLSAGADE 576 (609)
Q Consensus 530 G~-~d----------g~I~Iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~L~s~s~Dg 576 (609)
.. .+ ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.+..+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 21 11 2454465532 12333332 1123457899999998777766543
No 355
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=77.38 E-value=63 Score=32.49 Aligned_cols=235 Identities=9% Similarity=0.025 Sum_probs=108.7
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCC----eEEEEeCCCCeeEEEecC--------------CCCceEEEEec----CCEE
Q psy4876 334 GNENVCSVAWIQ-EGYMLGVGTSLG----TVQLWDVSAKKKCRTMDG--------------HDVRVGALAWN----TYIL 390 (609)
Q Consensus 334 h~~~V~~v~~sp-dg~~Lasgs~dg----~I~iwd~~~~~~~~~l~~--------------h~~~V~~l~~~----~~~L 390 (609)
....|.+|++.| +...|.+++..| .|...+ +.++.-..+.. ....|.+|+++ +..|
T Consensus 53 ~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 53 LGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 346799999998 233444455444 343332 23332222211 11257778884 5677
Q ss_pred EEEecCCeEEEEEcCCCCeeEEEEcc-------------------CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCC
Q psy4876 391 SSGSRCGNIVHHDVRSRDHKVALLQN-------------------HTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 391 ~sgs~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~ 450 (609)
.++...+.|...+-.. ..-..+.. ....|.+|.++| +...|..+..++.|+..+- .+
T Consensus 132 ~~g~~~ggl~~S~DgG--~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG 208 (394)
T 3b7f_A 132 YAGTSPQGLFRSTDHG--ASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AG 208 (394)
T ss_dssp EEEEETTEEEEESSTT--SBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TT
T ss_pred EEEecCCcEEEEcCCC--CCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CC
Confidence 7777767665543221 11112210 123578899988 3344555544454544322 22
Q ss_pred CCCCCccceEe-ecC-C--------cccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcC---C---CCeE
Q psy4876 451 QHTFSTQPIHS-LSR-H--------QAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDT---K---SQVC 514 (609)
Q Consensus 451 ~~~~~~~~~~~-~~~-h--------~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~---~---~~v~ 514 (609)
+. + +.+.. ... + ...+.+|+++|.....+..+. .+.|...+- .++.-..+.. . ..+.
T Consensus 209 ~t-W--~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~ 281 (394)
T 3b7f_A 209 TD-W--KPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGIYRMDR-REGVWKRIGDAMPREVGDIGF 281 (394)
T ss_dssp SS-C--EECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEEEEEET-TTTEEECGGGGSCTTTCSCEE
T ss_pred CC-c--eECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeEEEeCC-CCCcceECCCCCCCCCccceE
Confidence 11 1 11100 000 0 134889999997544555442 344544432 2333322221 1 2356
Q ss_pred EEEEcCC-CCeEEEEEec---------CCCeEEEEECCC-CceEEEEe-CCC--C---C--EEEEEEeCC-CCEEEEEEC
Q psy4876 515 ALLWNSD-YKELVSAHGF---------AQNQLIIWKYPS-LVKVAELH-GHS--A---R--VLNLAMSPD-ETTVLSAGA 574 (609)
Q Consensus 515 sl~~s~~-g~~l~~~sG~---------~dg~I~Iwd~~~-~~~~~~l~-~h~--~---~--V~~l~~spd-g~~L~s~s~ 574 (609)
.++++|. ...+++++.. .++...||.... ++.-..+. +-. . . ...++++|. ...|+.++.
T Consensus 282 ~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~ 361 (394)
T 3b7f_A 282 PIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTT 361 (394)
T ss_dssp EEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECT
T ss_pred EEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeC
Confidence 7888763 3444443211 123345555433 22222221 111 0 1 135788874 345666665
Q ss_pred CCCEE
Q psy4876 575 DETLR 579 (609)
Q Consensus 575 Dg~I~ 579 (609)
++.|.
T Consensus 362 ~g~l~ 366 (394)
T 3b7f_A 362 GGEIW 366 (394)
T ss_dssp TSCEE
T ss_pred CCeEE
Confidence 55544
No 356
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.23 E-value=75 Score=33.24 Aligned_cols=245 Identities=11% Similarity=0.088 Sum_probs=122.0
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCeEEEEeCCCC---eeEEEec---------CCCCceEEEEecCC-----EE-EEEec-
Q psy4876 336 ENVCSVAWIQEGY-MLGVGTSLGTVQLWDVSAK---KKCRTMD---------GHDVRVGALAWNTY-----IL-SSGSR- 395 (609)
Q Consensus 336 ~~V~~v~~spdg~-~Lasgs~dg~I~iwd~~~~---~~~~~l~---------~h~~~V~~l~~~~~-----~L-~sgs~- 395 (609)
.....|+|.|+|. .|+++...|.|++++.... ..+..+. ........|+|++. .| ++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999996 5666788899999975432 1222222 11456788999653 33 33222
Q ss_pred -C----------CeEEEEEcCCC---------CeeEEEEc--cCCCCeEEEEEccCCCEEEEEeCCC-------------
Q psy4876 396 -C----------GNIVHHDVRSR---------DHKVALLQ--NHTQEVCGLKWSPDGRYLASGGNDN------------- 440 (609)
Q Consensus 396 -d----------g~I~iwd~~~~---------~~~~~~~~--~h~~~V~~l~~spdg~~lasgs~Dg------------- 440 (609)
+ ..|.-|.+... ...+..+. ........|+|.|||.+.++.+..+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~ 173 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS 173 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence 1 14555665421 12222222 2223467899999998777665432
Q ss_pred ----cEEEEeCCCCC-----CC-----CC-----ccceEeecCCcccEEEEEEcCCCC----cE-EEEEe--ccCCCeEE
Q psy4876 441 ----LLNIWSGVPGQ-----HT-----FS-----TQPIHSLSRHQAAVKAIAWCPWSP----NV-LASGG--GTADRHIY 494 (609)
Q Consensus 441 ----~I~iwd~~~~~-----~~-----~~-----~~~~~~~~~h~~~V~~l~~sp~~~----~l-lasgg--Gs~Dg~I~ 494 (609)
.|.-.|.+... .. +. ...+.. .+|.. ...++|+|... .| +..+. |..-..-.
T Consensus 174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 24444444310 00 00 011221 23433 35789999732 22 32221 10001123
Q ss_pred EEECCCC------ceeEEEcCC--CCeEEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCc---eEEEE-eC---
Q psy4876 495 FWNVSSG------ACLDSIDTK--SQVCALLWNSD-------YKELVSAHGFAQNQLIIWKYPSLV---KVAEL-HG--- 552 (609)
Q Consensus 495 iwd~~t~------~~~~~~~~~--~~v~sl~~s~~-------g~~l~~~sG~~dg~I~Iwd~~~~~---~~~~l-~~--- 552 (609)
|..+..+ .++..+..+ ..+..+.|-.. +.+|+. .. .+.|....+.... ....+ .+
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~--~~-~g~i~~~~~~~~~~~~~~~~~~~g~~~ 328 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG--DR-NGNFLTLQQSPVTKQWQEKPLCLGTSG 328 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE--ET-TSCEEEEEC-----CCEEEEECEEETT
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe--cC-CCcEEEEEeCCCCceeeEEEeecCCcc
Confidence 3333322 234444444 36777777543 334443 22 3666655554321 11122 11
Q ss_pred -----CCCCEEEEEEeCCCCEEEEEECC-----CCEEEEEcCC
Q psy4876 553 -----HSARVLNLAMSPDETTVLSAGAD-----ETLRLWKIFE 585 (609)
Q Consensus 553 -----h~~~V~~l~~spdg~~L~s~s~D-----g~I~iWdl~~ 585 (609)
-..++.++.+.|||.++++.... ..=+||++..
T Consensus 329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~~ 371 (463)
T 2wg3_C 329 SCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIVD 371 (463)
T ss_dssp SSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEEC
T ss_pred cccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEecC
Confidence 23679999999999988776521 2346788764
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.22 E-value=24 Score=40.89 Aligned_cols=39 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD 374 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~ 374 (609)
..+.+++..++..++++-+.|++++||++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 457788888888999999999999999999999888754
No 358
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.13 E-value=1e+02 Score=30.48 Aligned_cols=235 Identities=11% Similarity=0.030 Sum_probs=125.1
Q ss_pred CEEEEEeCCCeEEEEeCCCC-------eeEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEE---cCCC-----Ce
Q psy4876 348 YMLGVGTSLGTVQLWDVSAK-------KKCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHD---VRSR-----DH 409 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd---~~~~-----~~ 409 (609)
..+++.+.+|.|+--.+.+- +-+..+.- ....+..+.. ....|+.-+..|.++... +... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~ 83 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQ 83 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCE
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCE
Confidence 35667777787776543211 11111111 1223333322 356666667778766544 3321 11
Q ss_pred eEEE-Ec-cCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCCC-ccceEeecCCcccEEEEEEcCCCCcEEE
Q psy4876 410 KVAL-LQ-NHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTFS-TQPIHSLSRHQAAVKAIAWCPWSPNVLA 483 (609)
Q Consensus 410 ~~~~-~~-~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~l~~sp~~~~lla 483 (609)
.+.. +. .....|.++..-. +..+++..+.+|.|+...+..-..... ......+.. ...+..+........+++
T Consensus 84 ~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 84 HVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEE
T ss_pred EHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEE
Confidence 1100 11 1234565554433 577999999999999988764321110 111223333 344555544444455665
Q ss_pred EEeccCCCeEEEEECC--C---------CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------
Q psy4876 484 SGGGTADRHIYFWNVS--S---------GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV------- 545 (609)
Q Consensus 484 sggGs~Dg~I~iwd~~--t---------~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~------- 545 (609)
.. ..|.+..+... . |...-.+.....|.++...+.+.+++.++ ..|.++.-.+....
T Consensus 163 ~T---~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T--~~G~~Krt~l~e~~~~~R~~~ 237 (327)
T 3uc1_A 163 VS---ANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVAT--SGGYAKRTAIEEYPVQGRGGK 237 (327)
T ss_dssp EE---TTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEE--TTSEEEEEEGGGSCBCCTTSC
T ss_pred EE---CCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEe--CCCcEEEEEHHHccccCcCCC
Confidence 53 68888888766 2 11112233455788877777777777765 78888887753221
Q ss_pred eEE--EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCCcc
Q psy4876 546 KVA--ELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 546 ~~~--~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
-+. .+..-.+.+..+....+...|+..+.+|.+.-+.+..-..
T Consensus 238 G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 238 GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCB
T ss_pred cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccc
Confidence 122 2222134565555555556777788888888787765433
No 359
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=64.85 E-value=1.2e+02 Score=30.49 Aligned_cols=276 Identities=13% Similarity=0.109 Sum_probs=127.2
Q ss_pred CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeec--CCCCeEEEEEccCCCEEEEEeCCCe
Q psy4876 281 NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLE--GNENVCSVAWIQEGYMLGVGTSLGT 358 (609)
Q Consensus 281 ~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--h~~~V~~v~~spdg~~Lasgs~dg~ 358 (609)
.+++...||.|+.|-.....+... .+ ......-..+. ....|..|+ -.....++-..||.
T Consensus 12 ~~~~l~~~G~v~~wG~n~~GqLG~-----~~-----------~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~l~~~G~ 73 (389)
T 3kci_A 12 ENLYFQGSGTIYGWGHNHRGQLGG-----IE-----------GAKVKVPTPCEALATLRPVQLI--GGEQTLFAVTADGK 73 (389)
T ss_dssp ---------CEEEEEECTTSTTSS-----CS-----------CSEEEEEEECHHHHHTCEEEEE--EETTEEEEEETTSC
T ss_pred cceeECCCCeEEEeeCCCCccCCC-----Cc-----------CccccCCEecccccCCceEEEE--eCCCeEEEEcCCCc
Confidence 467788999999997665211100 00 00011111111 122344443 33456666778899
Q ss_pred EEEEeCCCC--------e---eEEEecC-CCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC----------eeEEEE
Q psy4876 359 VQLWDVSAK--------K---KCRTMDG-HDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD----------HKVALL 414 (609)
Q Consensus 359 I~iwd~~~~--------~---~~~~l~~-h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~----------~~~~~~ 414 (609)
|..|-.... . ....+.. ....+..++. .....+.-..||.|+.|-..... .....+
T Consensus 74 v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 153 (389)
T 3kci_A 74 LYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVI 153 (389)
T ss_dssp EEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred EEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEe
Confidence 999964321 1 1111221 1223333443 45666777889999999543211 011111
Q ss_pred cc-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCC-CC-----CCCccceEeecCCcccEEEEEEcCCCCcEEEEEec
Q psy4876 415 QN-HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPG-QH-----TFSTQPIHSLSRHQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 415 ~~-h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~-~~-----~~~~~~~~~~~~h~~~V~~l~~sp~~~~llasggG 487 (609)
.. ....|..|+.. ..+.+.-..||.|+.|-.... +. .....+..........|..++........++..
T Consensus 154 ~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~-- 229 (389)
T 3kci_A 154 ESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLT-- 229 (389)
T ss_dssp GGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEE--
T ss_pred cccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEc--
Confidence 11 12256555543 445666678999999975431 00 000011111111223466666543223444442
Q ss_pred cCCCeEEEEECCCC-c----------eeEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--------c-
Q psy4876 488 TADRHIYFWNVSSG-A----------CLDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL--------V- 545 (609)
Q Consensus 488 s~Dg~I~iwd~~t~-~----------~~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~--------~- 545 (609)
.|+.|+.|-.... + ....+.. ...|..++.......+++ .+|.|+.|-.... .
T Consensus 230 -~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt----~~G~v~~wG~n~~GqLG~g~~~~ 304 (389)
T 3kci_A 230 -DDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALT----KSGAVYTWGKGDYHRLGHGSDDH 304 (389)
T ss_dssp -TTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEE----TTSCEEEEECCGGGTTCSSSCCC
T ss_pred -cCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEe----CCCeEEEEeCCCCCCCCCCCCcc
Confidence 7899999965421 1 1111221 124555554433322222 6899999965321 0
Q ss_pred --eEEEEeC-CCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 546 --KVAELHG-HSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 546 --~~~~l~~-h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
....+.. ....|..|+.. ....+....||.|..|-...
T Consensus 305 ~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 305 VRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEEECCT
T ss_pred ccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEeeCCC
Confidence 1111211 12346666653 33455567899999997654
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.72 E-value=1.2e+02 Score=29.69 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=122.6
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCee-------EE--EecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcCCCCee----
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAKKK-------CR--TMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVRSRDHK---- 410 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~~~-------~~--~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~~~~~~---- 410 (609)
++..++++.+.+|.|+--.+..-+. +. .+..++.-+..+.. ..+.++..+..|.++-.....-...
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 4566788889999998876543211 11 12222222332222 3567778888898776655321100
Q ss_pred -------EEEEccCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCC-CccceEeecCCcccEEEEEEcCCCC
Q psy4876 411 -------VALLQNHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSLSRHQAAVKAIAWCPWSP 479 (609)
Q Consensus 411 -------~~~~~~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~ 479 (609)
...+. ....|.++...+ +..+|+..+..|.++...+..-.... .......+.. .+.+..+.....+.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 00111 224455554333 46678888999999988875331110 1122233443 34555555544344
Q ss_pred cEEEEEeccCCCeEEEEECCC---------CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q psy4876 480 NVLASGGGTADRHIYFWNVSS---------GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL------ 544 (609)
Q Consensus 480 ~llasggGs~Dg~I~iwd~~t---------~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~------ 544 (609)
.+++. +.+|.+..+.... |.....+..+..+.++....++..+++.+ ..|.+....+...
T Consensus 164 ~i~l~---T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt--~~G~~kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 164 KVICL---SKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVS--ENGYGKRLNMSKISELKRG 238 (312)
T ss_dssp EEEEE---ETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEE--TTSEEEEEEGGGSCBCCTT
T ss_pred EEEEE---eCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEE--CCCceEEEEHHHhcccCCC
Confidence 45554 3788888887643 11222233445677776666666676654 6888888876422
Q ss_pred -ceEEEEe---CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 545 -VKVAELH---GHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 545 -~~~~~l~---~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.-+..+. ...+.+..+..-.+..-|+..+..|.+.-..+..
T Consensus 239 ~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~ 283 (312)
T 1suu_A 239 ATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGK 283 (312)
T ss_dssp CCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGG
T ss_pred CCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEccc
Confidence 1111121 2234454443334555566666777554445444
No 361
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=62.69 E-value=1.2e+02 Score=29.87 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=93.7
Q ss_pred ceeEEEEEecCC-CeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccc-eeeeeeecCCCCeEEEEEcc-
Q psy4876 269 DYYLNLIDWSHF-NVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA-IDHLMDLEGNENVCSVAWIQ- 345 (609)
Q Consensus 269 ~~~v~~l~wsp~-~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~h~~~V~~v~~sp- 345 (609)
|+.+..+.-+.. .++..+..|.++-..+..-.... .... |. +..+..+...+.|.++..-+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~----r~~~------------G~~i~~~l~l~~~e~i~~~~~~~~ 105 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEAS----RTAR------------GQHVANLLAFQPEERIAQVIQIRG 105 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCC----SSSC------------CEEHHHHTTCCTTCCEEEEEEESS
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCC----ccCC------------CEEHHHccCCCCCCEEEEEEEecc
Confidence 454444444443 47778888887766544311000 0000 11 11223344455666654443
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC-------eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcC--CCC-----
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK-------KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVR--SRD----- 408 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~--~~~----- 408 (609)
+..++++.+.+|.|+.-.+..- .....+.....-+..... ....|+..+..|.+..+... .-.
T Consensus 106 ~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~ 185 (327)
T 3uc1_A 106 YTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRA 185 (327)
T ss_dssp TTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTT
T ss_pred CCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcC
Confidence 4689999999999999876532 112223333333333333 35678888889998888766 211
Q ss_pred ---eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 409 ---HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 409 ---~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
.....+ .....|.++...+++.+++..+..|.++.-.+..
T Consensus 186 a~Gv~~i~L-~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 186 TSGVQGMRF-NIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp SBCEESSCC-CTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCCeeeecC-CCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 011112 2345677777766677899999999999887653
No 362
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=60.81 E-value=1.5e+02 Score=30.12 Aligned_cols=281 Identities=9% Similarity=0.032 Sum_probs=140.4
Q ss_pred EEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEEEEe
Q psy4876 275 IDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 275 l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs 354 (609)
|+......++...+|.|+.|-.....+... +... ........+..-..|..|+. .+.+.++-.
T Consensus 29 ia~g~~~~~~l~~~G~v~~wG~n~~GqLG~-------g~~~--------~~~~~p~~v~~l~~v~~va~--G~~h~~~l~ 91 (423)
T 3mvd_K 29 IAFHLELPKRRTVLGNVLVCGNGDVGQLGL-------GEDI--------LERKRLSPVAGIPDAVDISA--GGMHNLVLT 91 (423)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEECTTSTTCS-------CSSC--------CEEEEEEECCSCSSEEEEEE--CSSEEEEEE
T ss_pred EecCCccceeecCCCcEEEEeCCCCCCCCC-------CCCC--------ccCcCCeEccCCCCceEEee--CCCeEEEEe
Confidence 444444556677889999996654211100 0000 00111112222234655544 456677778
Q ss_pred CCCeEEEEeCCCCee-------------EEEecCCCCceEEEEecCCEEEEEecCCeEEEEEc--CCCCe---------e
Q psy4876 355 SLGTVQLWDVSAKKK-------------CRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDV--RSRDH---------K 410 (609)
Q Consensus 355 ~dg~I~iwd~~~~~~-------------~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~--~~~~~---------~ 410 (609)
.||.|..|-...... ...+. ....|..|+......++-..||.|+.|-. ....+ .
T Consensus 92 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~-~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~ 170 (423)
T 3mvd_K 92 KSGDIYSFGCNDEGALGRDTSEDGSESKPDLID-LPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKR 170 (423)
T ss_dssp TTSCEEEEECCSSSTTCSCCCSTTSSSSCEECC-CSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEE
T ss_pred CCCeEEEeECCCCcCCCCCCcCCccccCCeEEc-CCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCc
Confidence 899999996543111 11111 23467778776677777788999999975 22111 1
Q ss_pred EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC-----------------CCccceEeecCCcccEEEEE
Q psy4876 411 VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT-----------------FSTQPIHSLSRHQAAVKAIA 473 (609)
Q Consensus 411 ~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~-----------------~~~~~~~~~~~h~~~V~~l~ 473 (609)
..........|..|+.. ..+.+.-..||.|+.|-....... ....+..........|..++
T Consensus 171 ~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~ 248 (423)
T 3mvd_K 171 TPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIW 248 (423)
T ss_dssp EEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEE
T ss_pred eeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEE
Confidence 11111223456666654 345666678899999964322100 00112222112233455555
Q ss_pred EcCCCCcEEEEEeccCCCeEEEEECCCCc-----------eeEEEc-CCCCeEEEEEcCCCCeEEEEEecCCCeEEEEEC
Q psy4876 474 WCPWSPNVLASGGGTADRHIYFWNVSSGA-----------CLDSID-TKSQVCALLWNSDYKELVSAHGFAQNQLIIWKY 541 (609)
Q Consensus 474 ~sp~~~~llasggGs~Dg~I~iwd~~t~~-----------~~~~~~-~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~ 541 (609)
-... ..++.- +.++.|+.|-..... ...... ....|..++-......+++ .+|.|+.|-.
T Consensus 249 ~g~~--~~~~~~--~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~~ht~alt----~~G~v~~wG~ 320 (423)
T 3mvd_K 249 ATNY--CTFMRE--SQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQHHTVILT----TDLKCSVVGR 320 (423)
T ss_dssp EETT--EEEEEE--TTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECSSEEEEEE----TTCCEEEEEC
T ss_pred ECCc--EEEEEE--CCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEcccCeEEEEe----CCCcEEEEEC
Confidence 4322 222221 368888888643211 011111 1234555554333222222 6889999965
Q ss_pred CCC------------ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 542 PSL------------VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 542 ~~~------------~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
... .....+..-...|..|+.... ..+....||.|+.|=...
T Consensus 321 n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 321 PEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp CGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred CCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 321 112222223336777776533 444457899999997654
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=60.24 E-value=2.1e+02 Score=31.67 Aligned_cols=253 Identities=9% Similarity=0.078 Sum_probs=125.8
Q ss_pred ccccccCCccCC----ceeEEEEE-ecCCC---eEEEEcCC----eEEEEeCCCCCCCceEEecCCcccccccccccccc
Q psy4876 257 ADRILDAPEIQN----DYYLNLID-WSHFN---VLAVALGG----SIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNR 324 (609)
Q Consensus 257 p~~il~ap~~~~----~~~v~~l~-wsp~~---lla~s~dg----~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (609)
.+.+||.-.+.. ++.+..+. ++|++ +++.+.+| .|+++|+.+ +
T Consensus 112 wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t-------------------------~ 166 (711)
T 4hvt_A 112 WEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEK-------------------------K 166 (711)
T ss_dssp CEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTT-------------------------T
T ss_pred cEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCc-------------------------C
Confidence 345554433332 36777777 88886 44445444 799999998 2
Q ss_pred ceeeeeeec--CC------CCeEEEEEccCCCEEEEEe-----------CCCeEEEEeCCCC--eeEEEecCCCCceEEE
Q psy4876 325 AIDHLMDLE--GN------ENVCSVAWIQEGYMLGVGT-----------SLGTVQLWDVSAK--KKCRTMDGHDVRVGAL 383 (609)
Q Consensus 325 ~~~~l~~~~--h~------~~V~~v~~spdg~~Lasgs-----------~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l 383 (609)
+... -.+. .. .....++|..+ +-++.+. ....|+.|.+-+. +-...+.+....+..-
T Consensus 167 ~~~~-~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~ 244 (711)
T 4hvt_A 167 DFVK-NGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVS 244 (711)
T ss_dssp EECT-TCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEE
T ss_pred CcCC-CCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEE
Confidence 2210 0000 00 01234588743 3343332 1246888887654 2233444433333222
Q ss_pred Ee---cCC-----EEEEEec---CCeEEEEEcCCCCeeEEEEccCCCCeEEEEEccCCCEEEEE----------eCCCcE
Q psy4876 384 AW---NTY-----ILSSGSR---CGNIVHHDVRSRDHKVALLQNHTQEVCGLKWSPDGRYLASG----------GNDNLL 442 (609)
Q Consensus 384 ~~---~~~-----~L~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~lasg----------s~Dg~I 442 (609)
.+ ++. .+++.+. ...+.+.|..........+..... ..+..+.++.+++.. ...+.|
T Consensus 245 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (711)
T 4hvt_A 245 AGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSL 322 (711)
T ss_dssp EEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT--CEEEEEETTEEEEECSSCEEETTEEECTTCE
T ss_pred EEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc--ceEeeeECCEEEEEECcccccccccCCCCeE
Confidence 22 333 3444332 244666666542223333322222 123344566555532 135678
Q ss_pred EEEeCCCCCCCC-CccceEe-ec-CCcccEEEEEEcCCCCcEEEEEeccCCC--eEEEEECCCCc-eeEE-EcC--CCCe
Q psy4876 443 NIWSGVPGQHTF-STQPIHS-LS-RHQAAVKAIAWCPWSPNVLASGGGTADR--HIYFWNVSSGA-CLDS-IDT--KSQV 513 (609)
Q Consensus 443 ~iwd~~~~~~~~-~~~~~~~-~~-~h~~~V~~l~~sp~~~~llasggGs~Dg--~I~iwd~~t~~-~~~~-~~~--~~~v 513 (609)
.+.|+..+.... ....... +. .....+..+.|..+ .++++.. .++ .|.++|+.++. .+.. +.. .+.+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~l~~~~~--~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~ 398 (711)
T 4hvt_A 323 VALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD--RVFLATY--DNVVAKVVTFTLENEQWTKPVVLKLPYQNAI 398 (711)
T ss_dssp EEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS--CEEEEEE--ETTEEEEEEECEETTEECCCEEECCCSTTCE
T ss_pred EEEECCcccccccccccceEEECCCCCCeEEEEEEECC--EEEEEEE--ECCEEEEEEEECCCCceEEEeccCCCCCeEE
Confidence 889987641100 0011122 22 23346778888875 4666553 454 57788876664 2333 332 3456
Q ss_pred EEEEEcCCCCeEEEEEec--CCCeEEEEECC
Q psy4876 514 CALLWNSDYKELVSAHGF--AQNQLIIWKYP 542 (609)
Q Consensus 514 ~sl~~s~~g~~l~~~sG~--~dg~I~Iwd~~ 542 (609)
......+++..++....+ .-..+..+|..
T Consensus 399 ~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 399 FGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 666777777665544322 34678888876
No 364
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.12 E-value=23 Score=41.94 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=32.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEec
Q psy4876 337 NVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMD 374 (609)
Q Consensus 337 ~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~ 374 (609)
.+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566777788999999999999999999999988754
No 365
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=57.58 E-value=1.6e+02 Score=29.68 Aligned_cols=285 Identities=11% Similarity=0.078 Sum_probs=142.0
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
|..|+......++...|+.|+.|-.....+... +. ..+......+..+ ....|..|+.. +.+.+
T Consensus 18 v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~-------g~------~~~~~~P~~v~~l-~~~~i~~va~G--~~ht~ 81 (406)
T 4d9s_A 18 VLIISAGASHSVALLSGDIVCSWGRGEDGQLGH-------GD------AEDRPSPTQLSAL-DGHQIVSVTCG--ADHTV 81 (406)
T ss_dssp EEEEEECSSEEEEEETTTEEEEEECCTTSTTCS-------SS------CCCEEEEEECGGG-TTSCEEEEEEC--SSEEE
T ss_pred eEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCC-------CC------cccCcCCEEeccc-CCCCEEEEEeC--cceEE
Confidence 555777777788899999999997655211100 00 0000011111111 23456666654 33434
Q ss_pred EEeCC-CeEEEEeCCCC---------ee--EEEecC-CCCceEEEEecCCEEEEEecCCeEEEEEcCCCCe---------
Q psy4876 352 VGTSL-GTVQLWDVSAK---------KK--CRTMDG-HDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDH--------- 409 (609)
Q Consensus 352 sgs~d-g~I~iwd~~~~---------~~--~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~--------- 409 (609)
+-..+ +.|..|-.... .. ...+.. ....|..|+......+.-..+|.|+.|-.....+
T Consensus 82 al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~ 161 (406)
T 4d9s_A 82 AYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDS 161 (406)
T ss_dssp EEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCE
T ss_pred EEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCc
Confidence 34444 58999964321 00 111111 2346888888777777778999999996543211
Q ss_pred -eEEEEcc-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC------CCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 410 -KVALLQN-HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT------FSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 410 -~~~~~~~-h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~------~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
....+.. ....|..++.. ..+.+.-..||.|+.|-....... ....+..........|..++.... +.
T Consensus 162 ~~p~~v~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~--ht 237 (406)
T 4d9s_A 162 LVPQKIQAFEGIRIKMVAAG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR--HT 237 (406)
T ss_dssp EEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSS--EE
T ss_pred ccceEecccCCCcEEEEecC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCC--cE
Confidence 1111111 12256655543 345666678999999965432100 000111111111234666655332 33
Q ss_pred EEEEeccCCCeEEEEECCCCce-----------eEEEcC--CCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---
Q psy4876 482 LASGGGTADRHIYFWNVSSGAC-----------LDSIDT--KSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLV--- 545 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t~~~-----------~~~~~~--~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~--- 545 (609)
++. +.++.|+.|-...... ...+.. ...|..++-... ..++.. .+|.|+.|-....-
T Consensus 238 ~~l---~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--hs~alt--~~G~v~~wG~n~~GqLG 310 (406)
T 4d9s_A 238 ISV---SYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR--HTMALT--SDGKLYGWGWNKFGQVG 310 (406)
T ss_dssp EEE---ETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--EEEEEE--TTSCEEEEECCTTSTTC
T ss_pred EEE---cCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC--EEEEEc--CCCeEEEeeCCCCCCCC
Confidence 333 2688999997542211 111111 123555544332 222222 68899999653211
Q ss_pred --------eEEEEe-CCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 546 --------KVAELH-GHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 546 --------~~~~l~-~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
....+. .....|..|+.. ....+....||.|..|=...
T Consensus 311 ~g~~~~~~~p~~v~~~~~~~v~~va~G--~~hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 311 VGNNLDQCSPVQVRFPDDQKVVQVSCG--WRHTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp SSSSSCEEEEEEECCGGGCCEEEEEEC--SSEEEEEETTSCEEEEECCT
T ss_pred CCCCCCCccCEEEeccCCCcEEEEEeC--CCeEEEEeCCCCEEEecCCC
Confidence 011111 122356666653 33555566889999997644
No 366
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=57.42 E-value=1.7e+02 Score=29.66 Aligned_cols=244 Identities=10% Similarity=0.038 Sum_probs=123.5
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
.|..|+......++...||.|+.|-.....+... .... .... .....+ .+ ...|..|+.. ..+.
T Consensus 60 ~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~-----~~~~---~~~~---~~P~~v-~l--~~~i~~va~G--~~hs 123 (413)
T 1a12_A 60 DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR-----DTSV---EGSE---MVPGKV-EL--QEKVVQVSAG--DSHT 123 (413)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS-----CCCS---TTGG---GSCEEC-CC--CSCEEEEEEC--SSEE
T ss_pred CeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCC-----CCCC---Cccc---cCCeEe-cC--CCcEEEEecC--CCeE
Confidence 3556777667788899999999998765211100 0000 0000 011111 11 2356555543 3455
Q ss_pred EEEeCCCeEEEEeC--CC-Cee-----------EEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCee------
Q psy4876 351 GVGTSLGTVQLWDV--SA-KKK-----------CRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDHK------ 410 (609)
Q Consensus 351 asgs~dg~I~iwd~--~~-~~~-----------~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~~------ 410 (609)
++-+.||.|..|-. .. +++ ...+ .....|..|+......+.-..||.|+.|-.....+.
T Consensus 124 ~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~ 202 (413)
T 1a12_A 124 AALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPEL 202 (413)
T ss_dssp EEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGG
T ss_pred EEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccc
Confidence 66678889999864 21 110 1111 234567778776677777788999999965432110
Q ss_pred ---------------EEEEcc------CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC------CCccce--Ee
Q psy4876 411 ---------------VALLQN------HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT------FSTQPI--HS 461 (609)
Q Consensus 411 ---------------~~~~~~------h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~------~~~~~~--~~ 461 (609)
...... ....|..|+... .+.+.-..||.|+.|-....... ....+. ..
T Consensus 203 ~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~ 280 (413)
T 1a12_A 203 FANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTS 280 (413)
T ss_dssp TSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGG
T ss_pred cccccccccccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchh
Confidence 000110 223466665543 34445567899999976532100 000111 11
Q ss_pred ecCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC------C---c---eeEEEcCCCCeEEEEEcCCCCeEEEEE
Q psy4876 462 LSRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS------G---A---CLDSIDTKSQVCALLWNSDYKELVSAH 529 (609)
Q Consensus 462 ~~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t------~---~---~~~~~~~~~~v~sl~~s~~g~~l~~~s 529 (609)
+......|..|+-... +.++. +.||.|+.|-... + . ....+..-..|..++..... .++..
T Consensus 281 l~~~~~~v~~ia~G~~--hs~al---~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~~v~~v~~G~~h--s~alt 353 (413)
T 1a12_A 281 FKNSTKSWVGFSGGQH--HTVCM---DSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVSSVACGASV--GYAVT 353 (413)
T ss_dssp GCCTTCCEEEEEECSS--EEEEE---ETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSSSEEEEEECSSE--EEEEE
T ss_pred ccCCCceEEEEecccc--eEEEE---eCCCCEEEeeCCCCCccCCCCCCccccCCEEecccCceeEEEECcce--EEEEe
Confidence 1111134666665432 33333 2689999996532 1 0 11122222356666554332 22222
Q ss_pred ecCCCeEEEEECC
Q psy4876 530 GFAQNQLIIWKYP 542 (609)
Q Consensus 530 G~~dg~I~Iwd~~ 542 (609)
.+|.|+.|-..
T Consensus 354 --~~G~v~~wG~n 364 (413)
T 1a12_A 354 --KDGRVFAWGMG 364 (413)
T ss_dssp --TTSCEEEEECC
T ss_pred --CCCCEEEecCC
Confidence 68999999754
No 367
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=57.33 E-value=5.1 Score=23.35 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.6
Q ss_pred CCCCccccCCCC
Q psy4876 101 SGGDRYIPNRSA 112 (609)
Q Consensus 101 ~~~~~~~p~~~~ 112 (609)
.+.++|||.|.+
T Consensus 3 ~~~eKFiPsRPA 14 (26)
T 2rqw_B 3 SANGKFIPSRPA 14 (26)
T ss_dssp CCCCSSCCSSCC
T ss_pred ccccccccCCCC
Confidence 356899999976
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=55.51 E-value=1.8e+02 Score=29.46 Aligned_cols=164 Identities=10% Similarity=0.048 Sum_probs=88.6
Q ss_pred eEEEEeCCCC--eeEEEecC------CCCceEEEEec---------CCEEEEEe-cCCeEEEEEcCCCCeeEEEEc----
Q psy4876 358 TVQLWDVSAK--KKCRTMDG------HDVRVGALAWN---------TYILSSGS-RCGNIVHHDVRSRDHKVALLQ---- 415 (609)
Q Consensus 358 ~I~iwd~~~~--~~~~~l~~------h~~~V~~l~~~---------~~~L~sgs-~dg~I~iwd~~~~~~~~~~~~---- 415 (609)
.|.+||+.++ +.++.+.- ....+..+.++ +.+++... ..+.|.|+|+.++. ..+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~-swRv~~~~~~ 202 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD-SWNVTHPTFK 202 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE-EEEEECGGGS
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc-EEEEccCCCc
Confidence 5777888887 77776642 23456777776 23333333 46789999998763 222221
Q ss_pred ----------cC----CCCeEEEEEccC----CCEEEEEeCCC-cEEEEe---CCCCCCCCCccceEeec--CCcccEEE
Q psy4876 416 ----------NH----TQEVCGLKWSPD----GRYLASGGNDN-LLNIWS---GVPGQHTFSTQPIHSLS--RHQAAVKA 471 (609)
Q Consensus 416 ----------~h----~~~V~~l~~spd----g~~lasgs~Dg-~I~iwd---~~~~~~~~~~~~~~~~~--~h~~~V~~ 471 (609)
+. ...|.+|+++|+ +++|....-.+ .++-.. ++.... ...+..+- +....-..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~---~~~v~~~G~kg~~s~~~~ 279 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG---KLNPELLGNRGKYNDAIA 279 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC---CCCCEEEEECCTTCCEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch---hhceEEeeecCCCCCcce
Confidence 11 246888999997 77777766544 333332 222211 12222221 11133445
Q ss_pred EEEcCCCCcEEEEEeccCCCeEEEEECCCC----ceeEEEcCC---CCeEEEEEcCCCCeEEE
Q psy4876 472 IAWCPWSPNVLASGGGTADRHIYFWNVSSG----ACLDSIDTK---SQVCALLWNSDYKELVS 527 (609)
Q Consensus 472 l~~sp~~~~llasggGs~Dg~I~iwd~~t~----~~~~~~~~~---~~v~sl~~s~~g~~l~~ 527 (609)
++..+....++++- -....|..|+..+. .....+... ..+..+.+..+|...+.
T Consensus 280 ~~~D~~~G~ly~~~--~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~ 340 (381)
T 3q6k_A 280 LAYDPKTKVIFFAE--ANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFM 340 (381)
T ss_dssp EEECTTTCEEEEEE--SSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEE
T ss_pred EEEeCCCCeEEEEe--ccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEE
Confidence 66764333566654 47889999998751 122222221 24566766666654443
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=55.09 E-value=78 Score=37.33 Aligned_cols=31 Identities=10% Similarity=0.000 Sum_probs=26.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q psy4876 420 EVCGLKWSPDGRYLASGGNDNLLNIWSGVPG 450 (609)
Q Consensus 420 ~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~ 450 (609)
.+.+++..++..++++-+.|++++||++.++
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 3455666778889999999999999999988
No 370
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=53.85 E-value=1.7e+02 Score=28.56 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=97.6
Q ss_pred CEEEEEecCCeEEEEEcCCCCee--------EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEe---CCCCCCCCCc
Q psy4876 388 YILSSGSRCGNIVHHDVRSRDHK--------VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWS---GVPGQHTFST 456 (609)
Q Consensus 388 ~~L~sgs~dg~I~iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd---~~~~~~~~~~ 456 (609)
.++++.+.+|.|+--.+..-... ...+. ..+.+..+........|+..++.|.++-+. +.........
T Consensus 4 ~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G 82 (307)
T 1zi0_A 4 DVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARG 82 (307)
T ss_dssp EEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC
Confidence 35566677777766555431100 00111 223344444444455666667778765554 3332111111
Q ss_pred cceE---eecCCcccEEEEEE-c--CCCCcEEEEEeccCCCeEEEEECCC-------CceeEEEcCCCCeEEEEEcCCCC
Q psy4876 457 QPIH---SLSRHQAAVKAIAW-C--PWSPNVLASGGGTADRHIYFWNVSS-------GACLDSIDTKSQVCALLWNSDYK 523 (609)
Q Consensus 457 ~~~~---~~~~h~~~V~~l~~-s--p~~~~llasggGs~Dg~I~iwd~~t-------~~~~~~~~~~~~v~sl~~s~~g~ 523 (609)
.++. .+. ....|.++.. . .++..+++. +..|.++...+.. |.....+..+..+..+.......
T Consensus 83 ~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~---T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 83 RPIVNLLPLE-QDERITAILPVTEFEEGVKVFMA---TANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEE---ETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred eEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEE---eCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 2211 222 2334555433 2 233334443 3799999887642 21222233345666666665566
Q ss_pred eEEEEEecCCCeEEEEECCC---------CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCC
Q psy4876 524 ELVSAHGFAQNQLIIWKYPS---------LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFE 585 (609)
Q Consensus 524 ~l~~~sG~~dg~I~Iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~ 585 (609)
.++..+ .+|.+..++... |.....+. ..+.|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T--~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFS--AEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEE--TTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEEC--CCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 666654 788888887532 22222222 345677776555667889999999999888754
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=50.93 E-value=1.7e+02 Score=27.93 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=92.4
Q ss_pred CCceeEEEEEecC-CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEcc
Q psy4876 267 QNDYYLNLIDWSH-FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQ 345 (609)
Q Consensus 267 ~~~~~v~~l~wsp-~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~sp 345 (609)
..|..+..+..+. +.++..+..|.++--.+..- |. .....+ +..++.|..+.. .
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~l----------p~------------~~~~~l--l~~~e~i~~v~~-~ 76 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQA----------LQ------------GSKVSL--KSREEKIVGAFI-R 76 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHH----------HT------------SEECCC--SSTTCCEEEEEE-G
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhC----------cc------------Cccccc--CCCCCEEEEEEC-C
Confidence 3355555554444 45888888888886554320 00 111112 545566777654 4
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCC------eeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcCCCC-------
Q psy4876 346 --EGYMLGVGTSLGTVQLWDVSAK------KKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVRSRD------- 408 (609)
Q Consensus 346 --dg~~Lasgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~~~~------- 408 (609)
+..+++..+.+|.|+...+..- .....+... ..+..+.. ....++..+..|.+..+....-.
T Consensus 77 ~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 77 EKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp GGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred cCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Confidence 4678999999999999886542 111223322 33433333 34578888899998888754211
Q ss_pred -eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q psy4876 409 -HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP 449 (609)
Q Consensus 409 -~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~ 449 (609)
.....+. ....|.++....++..++..+..|.++...+..
T Consensus 156 Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 156 GVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp CEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGG
T ss_pred CEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 1111122 235676666656677888899999999888653
No 372
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=49.04 E-value=2e+02 Score=28.19 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=121.9
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCC----eeEEEecCCCCceEEEEe-cCCEEEEEecCCeEEEEEcC---CCC-----eeE
Q psy4876 345 QEGYMLGVGTSLGTVQLWDVSAK----KKCRTMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDVR---SRD-----HKV 411 (609)
Q Consensus 345 pdg~~Lasgs~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~~---~~~-----~~~ 411 (609)
|+..++++.+.+|.|+--.+..- .....+..++.-+..+.. ..+.|+..+..|.++-+... ... ..+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Confidence 45667788888888877654311 111122223222322222 45677777888887665442 211 110
Q ss_pred -EEEc-cCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCC--CccceEeecCCcccEEEEEEcCCCCcEEEE
Q psy4876 412 -ALLQ-NHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTF--STQPIHSLSRHQAAVKAIAWCPWSPNVLAS 484 (609)
Q Consensus 412 -~~~~-~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~llas 484 (609)
..+. .....|.++..-+ ++.+++.++..|.++...+..-.... .......+... +.+..+........+++.
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~ 161 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLV 161 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEE
Confidence 0011 1234466543333 26688999999999998875332111 01112223323 455555554444455554
Q ss_pred EeccCCCeEEEEECCC----C---ceeE--EEcCCCCeEEEEEcCCCC-eEEEEEecCCCeEEEEECCCC-------ceE
Q psy4876 485 GGGTADRHIYFWNVSS----G---ACLD--SIDTKSQVCALLWNSDYK-ELVSAHGFAQNQLIIWKYPSL-------VKV 547 (609)
Q Consensus 485 ggGs~Dg~I~iwd~~t----~---~~~~--~~~~~~~v~sl~~s~~g~-~l~~~sG~~dg~I~Iwd~~~~-------~~~ 547 (609)
. .+|.+..+.... + .-+. .+.....|.++....++. .+++.+ ..|..+..++... .-+
T Consensus 162 T---~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt--~~G~gKr~~~~e~~~~~Rg~kGv 236 (323)
T 1wp5_A 162 T---HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVAT--QRGAVKKMKLTEFEKATRAKRGV 236 (323)
T ss_dssp E---TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEE--TTSEEEEEEGGGSCCCCTTSCCE
T ss_pred e---CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEE--CCCceEEEEHHHccccCCCCCCE
Confidence 3 688888887642 1 1122 223345677665544454 666654 5777777665321 112
Q ss_pred EEE---eCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 548 AEL---HGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 548 ~~l---~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
..+ ......+..+....++..|+..+..|.+.-..+..-
T Consensus 237 ~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i 278 (323)
T 1wp5_A 237 VILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDI 278 (323)
T ss_dssp ECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGS
T ss_pred ECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhc
Confidence 222 122224554433344556777888888777777653
No 373
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=48.93 E-value=2e+02 Score=27.99 Aligned_cols=235 Identities=11% Similarity=0.032 Sum_probs=123.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCeeEE---------EecCCCCceEEEEe-cCCEEEEEecCCeEEEEEc---CCCC----
Q psy4876 346 EGYMLGVGTSLGTVQLWDVSAKKKCR---------TMDGHDVRVGALAW-NTYILSSGSRCGNIVHHDV---RSRD---- 408 (609)
Q Consensus 346 dg~~Lasgs~dg~I~iwd~~~~~~~~---------~l~~h~~~V~~l~~-~~~~L~sgs~dg~I~iwd~---~~~~---- 408 (609)
+..++++.+.+|.|+--.+.+-+..+ .+..++.-+..+.. ..+.|+..+..|.++-+.. ....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~ 81 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGAR 81 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCC
Confidence 45677888899998877665422111 12222222222222 3567777778888665544 2221
Q ss_pred -eeEE-EEc-cCCCCeEEEEEc---cCCCEEEEEeCCCcEEEEeCCCCCCCC-CccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 409 -HKVA-LLQ-NHTQEVCGLKWS---PDGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 409 -~~~~-~~~-~h~~~V~~l~~s---pdg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
..+. .+. .....|.++..- .++.+++..+..|.++...+..-.... .......+..+ +.+..+........+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 82 GRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEV 160 (307)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEE
T ss_pred CeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEE
Confidence 1110 011 133456665442 356678899999999998765321111 01122223334 455555554444455
Q ss_pred EEEEeccCCCeEEEEECCC---------CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCC--------
Q psy4876 482 LASGGGTADRHIYFWNVSS---------GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSL-------- 544 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~t---------~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~-------- 544 (609)
++.. .+|.+..++... |...-.+.....|.++....++..+++.+ ..|.++-.++...
T Consensus 161 ~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T--~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 161 MLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTAT--QNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp EEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEE--TTSEEEEECGGGSCCCCTTSC
T ss_pred EEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEE--cCCceEEEEHHHhccCCCCCC
Confidence 5543 688888777632 11122233445677776555566676654 6888887765321
Q ss_pred -ceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 545 -VKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 545 -~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
.....+..-.+.+..+....+...|+..+.+|.+.-+.+..-
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 111122223355655555445566777888888777777654
No 374
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=48.64 E-value=2e+02 Score=28.01 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=108.4
Q ss_pred cCCEEEEEecCCeEEEEEcCCCCe------eEE--EEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCC---CCCCC
Q psy4876 386 NTYILSSGSRCGNIVHHDVRSRDH------KVA--LLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVP---GQHTF 454 (609)
Q Consensus 386 ~~~~L~sgs~dg~I~iwd~~~~~~------~~~--~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~---~~~~~ 454 (609)
+..++++.+.+|.|+--.+..-.. -+. .+. ..+.+..+........++..++.|.++-+.... .....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 356778889999998876643210 011 112 234455555555566777788889877665432 11000
Q ss_pred Cccc---eEeecCCcccEEEEEEcC---CCCcEEEEEeccCCCeEEEEECCC-------CceeEEEcCCCCeEEEEEcCC
Q psy4876 455 STQP---IHSLSRHQAAVKAIAWCP---WSPNVLASGGGTADRHIYFWNVSS-------GACLDSIDTKSQVCALLWNSD 521 (609)
Q Consensus 455 ~~~~---~~~~~~h~~~V~~l~~sp---~~~~llasggGs~Dg~I~iwd~~t-------~~~~~~~~~~~~v~sl~~s~~ 521 (609)
...+ ...+... ..|.++...+ ....+++. +..|.++...+.. |.....+.....+..+.....
T Consensus 86 ~G~~i~~~l~l~~~-e~i~~~~~~~~~~~~~~ll~~---T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLGDQ-EEILTIKNSKDLTDDAYLLLT---TASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCCTT-CCEEEEEEESCCCTTCEEEEE---ETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CCcChhhccCCCCC-CEEEEEEEeccCCCCCEEEEE---eCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 0011 1123222 3344443332 23345544 3789988887742 222223334556777666665
Q ss_pred CCeEEEEEecCCCeEEEEECCC---------CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEcCCC
Q psy4876 522 YKELVSAHGFAQNQLIIWKYPS---------LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRLWKIFEK 586 (609)
Q Consensus 522 g~~l~~~sG~~dg~I~Iwd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl~~~ 586 (609)
...++.++ .+|.+..+.... |.....+. ..+.|..+..-.++..|++.+..|.++...+..-
T Consensus 162 ~~~i~l~T--~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVICLS--KKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEEEE--TTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCEEEEEe--CCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 66677654 789998887643 22222233 2456777766566778889999999999888654
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=48.27 E-value=2.3e+02 Score=28.51 Aligned_cols=235 Identities=13% Similarity=0.057 Sum_probs=122.4
Q ss_pred EccCCCEEEEEeCCCeEEEEeCCC---------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEc---CCC-
Q psy4876 343 WIQEGYMLGVGTSLGTVQLWDVSA---------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDV---RSR- 407 (609)
Q Consensus 343 ~spdg~~Lasgs~dg~I~iwd~~~---------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~---~~~- 407 (609)
+-++..++++.+.+|.|+--.+.. +.....+.. ...+..+.. ..+.|+..+..|.++-+.. ...
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 346778899999999998765421 122233333 334443333 3466777778888766543 221
Q ss_pred ----CeeEE---EEccCCCCeEEEEEcc---CCCEEEEEeCCCcEEEEeCCCCCCCC-CccceEeecCCcccEEEEEEcC
Q psy4876 408 ----DHKVA---LLQNHTQEVCGLKWSP---DGRYLASGGNDNLLNIWSGVPGQHTF-STQPIHSLSRHQAAVKAIAWCP 476 (609)
Q Consensus 408 ----~~~~~---~~~~h~~~V~~l~~sp---dg~~lasgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~V~~l~~sp 476 (609)
...+. .+. ....|.++..-. ++.+|+.++..|.++...+..-.... .......+.. ...+-.+....
T Consensus 82 r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~ 159 (370)
T 3l6v_A 82 SNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTD 159 (370)
T ss_dssp TTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEEC
T ss_pred cccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeC
Confidence 11111 122 234566554432 45689999999999998865432110 0111223333 33444444444
Q ss_pred CCCcEEEEEeccCCCeEEEEECCC---------CceeEEEcCCCCeEEEEEcC---------------------------
Q psy4876 477 WSPNVLASGGGTADRHIYFWNVSS---------GACLDSIDTKSQVCALLWNS--------------------------- 520 (609)
Q Consensus 477 ~~~~llasggGs~Dg~I~iwd~~t---------~~~~~~~~~~~~v~sl~~s~--------------------------- 520 (609)
....+++.. ..|.+..++... |...-.+.....|.++...+
T Consensus 160 ~~~~i~l~T---~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 160 GDRDVLLFA---SNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp SCCEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------
T ss_pred CCceEEEEe---CCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccc
Confidence 344455543 678877776532 11111223344566655544
Q ss_pred --------CCCeEEEEEecCCCeEEEEECCCCc-------eEE--EEeCCCCCEEEEEEeCCCCEEEEEECCCCEEEEEc
Q psy4876 521 --------DYKELVSAHGFAQNQLIIWKYPSLV-------KVA--ELHGHSARVLNLAMSPDETTVLSAGADETLRLWKI 583 (609)
Q Consensus 521 --------~g~~l~~~sG~~dg~I~Iwd~~~~~-------~~~--~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~iWdl 583 (609)
.+..+++++ ..|..+...+.... -+. .+....+.+..+.+..+...|+..+..|.+.-..+
T Consensus 237 ~~~~~~~~~~~~il~vT--e~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 237 VIDVADNGDVAYILTAT--ENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ----------CEEEEEE--TTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccccccCCceEEEee--CCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 345666654 78887777653221 111 22222345555544445556666777777665555
Q ss_pred CC
Q psy4876 584 FE 585 (609)
Q Consensus 584 ~~ 585 (609)
..
T Consensus 315 ~~ 316 (370)
T 3l6v_A 315 SE 316 (370)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 376
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=46.57 E-value=2.4e+02 Score=28.37 Aligned_cols=206 Identities=13% Similarity=0.081 Sum_probs=105.9
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEE
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYML 350 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~L 350 (609)
.|..|+......++...+|.|+.|-.....+... .+ .........+..+ ....|..|+- ...+.
T Consensus 122 ~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~-----g~--------~~~~~~p~~v~~~-~~~~i~~va~--G~~hs 185 (406)
T 4d9s_A 122 RIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL-----GD--------TEDSLVPQKIQAF-EGIRIKMVAA--GAEHT 185 (406)
T ss_dssp CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS-----SS--------CCCEEEEEECGGG-TTCCEEEEEE--CSSEE
T ss_pred CEEEEEEChhheEEEcCCCcEEEeCCCCCccCCC-----CC--------CCCcccceEeccc-CCCcEEEEec--CCCeE
Confidence 4666777777788999999999998655211100 00 0000001111111 2335655554 34566
Q ss_pred EEEeCCCeEEEEeCCCC----------ee-EEEecC-CCCceEEEEecCCEEEEEecCCeEEEEEcCCCCe---------
Q psy4876 351 GVGTSLGTVQLWDVSAK----------KK-CRTMDG-HDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDH--------- 409 (609)
Q Consensus 351 asgs~dg~I~iwd~~~~----------~~-~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~--------- 409 (609)
++-..+|.|..|-.... .. ...+.. ....|..++......+.-..+|.|+.|-.....+
T Consensus 186 ~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~ 265 (406)
T 4d9s_A 186 AAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 265 (406)
T ss_dssp EEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCE
T ss_pred EEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCc
Confidence 66778899999964321 11 111111 2346777777667777778899999996543210
Q ss_pred e-EEEEcc-CCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCC------CCccceEeecCCcccEEEEEEcCCCCcE
Q psy4876 410 K-VALLQN-HTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHT------FSTQPIHSLSRHQAAVKAIAWCPWSPNV 481 (609)
Q Consensus 410 ~-~~~~~~-h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~------~~~~~~~~~~~h~~~V~~l~~sp~~~~l 481 (609)
. ...+.. ....|..|+-. ..+.+.-..||.|+.|=....... ....+..........|..|+.-.. +.
T Consensus 266 ~~p~~v~~~~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~--hs 341 (406)
T 4d9s_A 266 LIPHKLEALSNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWR--HT 341 (406)
T ss_dssp EEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSS--EE
T ss_pred cccEEecccCCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCC--eE
Confidence 0 111111 12345555543 345555678899999965432100 000111111112234556654332 33
Q ss_pred EEEEeccCCCeEEEEECC
Q psy4876 482 LASGGGTADRHIYFWNVS 499 (609)
Q Consensus 482 lasggGs~Dg~I~iwd~~ 499 (609)
++.. .++.|+.|=..
T Consensus 342 ~alt---~~G~v~~wG~n 356 (406)
T 4d9s_A 342 LAVT---ERNNVFAWGRG 356 (406)
T ss_dssp EEEE---TTSCEEEEECC
T ss_pred EEEe---CCCCEEEecCC
Confidence 4432 68888888654
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.43 E-value=59 Score=35.03 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=22.8
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEEe
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVGT 354 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasgs 354 (609)
+.+..+........++.++|+||++.|+++-
T Consensus 519 Gel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 519 GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 5666655433456799999999998888764
No 378
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=44.84 E-value=1.6e+02 Score=32.56 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCCCCeeEEEecC
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVSAKKKCRTMDG 375 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~~~~~~~~l~~ 375 (609)
..|.++.+ +..+|++-+.|.++++|++.+++++.+..-
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44666555 467999999999999999999998877654
No 379
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=44.37 E-value=79 Score=34.06 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=44.7
Q ss_pred CCeEEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceEEEEeCC-CCCEEEEEEeCCCCEEEEEE
Q psy4876 511 SQVCALLWNSDYKELVSAHGF----------AQNQLIIWKYPSLVKVAELHGH-SARVLNLAMSPDETTVLSAG 573 (609)
Q Consensus 511 ~~v~sl~~s~~g~~l~~~sG~----------~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~s~s 573 (609)
.....|.|.++|.+.+..-+. ..+.|..++..+++....+.+. ...++.++|+||+++|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 356789999999877743211 1236777777778766656543 35789999999999888764
No 380
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=44.01 E-value=2.7e+02 Score=28.11 Aligned_cols=246 Identities=8% Similarity=-0.008 Sum_probs=122.7
Q ss_pred EEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCEEE
Q psy4876 272 LNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYMLG 351 (609)
Q Consensus 272 v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~La 351 (609)
|..|+......++...||.|+.|-.....+... +.. ........ ..+.....|..|+.. ..+.+
T Consensus 77 v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~-------~~~------~~~~~~~P-~~v~~~~~i~~va~G--~~hs~ 140 (423)
T 3mvd_K 77 AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGR-------DTS------EDGSESKP-DLIDLPGKALCISAG--DSHSA 140 (423)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEECCSSSTTCS-------CCC------STTSSSSC-EECCCSSCEEEEEEC--SSEEE
T ss_pred ceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCC-------CCc------CCccccCC-eEEcCCCCEEEEEcC--cCeEE
Confidence 455777777788999999999998765211100 000 00000000 111122456555543 34555
Q ss_pred EEeCCCeEEEEeC--CC-Cee---------EEEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCC-----------
Q psy4876 352 VGTSLGTVQLWDV--SA-KKK---------CRTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRD----------- 408 (609)
Q Consensus 352 sgs~dg~I~iwd~--~~-~~~---------~~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~----------- 408 (609)
+-..||.|..|-. .. +++ ..........|..|+......++-..+|.|+.|-.....
T Consensus 141 al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 220 (423)
T 3mvd_K 141 CLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220 (423)
T ss_dssp EEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTT
T ss_pred EEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccc
Confidence 6678899999975 22 221 111112345678888877777777889999999643211
Q ss_pred -----------eeEEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCCCCCCCCC-----ccceEeecCCcccEEEE
Q psy4876 409 -----------HKVALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGVPGQHTFS-----TQPIHSLSRHQAAVKAI 472 (609)
Q Consensus 409 -----------~~~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~~~~~~~~-----~~~~~~~~~h~~~V~~l 472 (609)
.+..........|..++.... ..++.-..|+.|+.|-......... .............|..|
T Consensus 221 ~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~i 299 (423)
T 3mvd_K 221 GEGRRGKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHI 299 (423)
T ss_dssp SCSTTTTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEE
T ss_pred cccccccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEE
Confidence 111111112234555554322 2233335788999996543210000 00000011112356666
Q ss_pred EEcCCCCcEEEEEeccCCCeEEEEECCCC---------c---eeEEEcC-CCCeEEEEEcCCCCeEEEEEecCCCeEEEE
Q psy4876 473 AWCPWSPNVLASGGGTADRHIYFWNVSSG---------A---CLDSIDT-KSQVCALLWNSDYKELVSAHGFAQNQLIIW 539 (609)
Q Consensus 473 ~~sp~~~~llasggGs~Dg~I~iwd~~t~---------~---~~~~~~~-~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iw 539 (609)
+-... +.++. +.||.|+.|=.... . ....+.. ...|..|+.......+++ .+|.|+.|
T Consensus 300 a~G~~--ht~al---t~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt----~~G~v~~w 370 (423)
T 3mvd_K 300 AGGQH--HTVIL---TTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVT----IDGKLYSW 370 (423)
T ss_dssp EECSS--EEEEE---ETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEE----TTSCEEEE
T ss_pred EcccC--eEEEE---eCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEc----CCCCEEEE
Confidence 65332 33333 26899999965321 1 1111221 125666665543333322 78999999
Q ss_pred ECCC
Q psy4876 540 KYPS 543 (609)
Q Consensus 540 d~~~ 543 (609)
=...
T Consensus 371 G~n~ 374 (423)
T 3mvd_K 371 GSGV 374 (423)
T ss_dssp ECCT
T ss_pred CCCC
Confidence 7643
No 381
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=43.87 E-value=73 Score=34.49 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=44.0
Q ss_pred CeEEEEEcCCCCeEEEEEec----------CCCeEEEEECCCCceEEEEeCC-CCCEEEEEEeCCCCEEEEE
Q psy4876 512 QVCALLWNSDYKELVSAHGF----------AQNQLIIWKYPSLVKVAELHGH-SARVLNLAMSPDETTVLSA 572 (609)
Q Consensus 512 ~v~sl~~s~~g~~l~~~sG~----------~dg~I~Iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~L~s~ 572 (609)
..-.|+|++.|.+++.--+. ..+.+.+.+..+++....+.++ ...++.++|+||+++|+..
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 46789999999966653221 1235666677777776666665 3679999999999988776
No 382
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=43.39 E-value=2.7e+02 Score=28.07 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=61.4
Q ss_pred CeEEEEECCCC--ceeEEEcCC-------CCeEEEEEc---CC---CCeEEEEEecCCCeEEEEECCCCceEEEEe----
Q psy4876 491 RHIYFWNVSSG--ACLDSIDTK-------SQVCALLWN---SD---YKELVSAHGFAQNQLIIWKYPSLVKVAELH---- 551 (609)
Q Consensus 491 g~I~iwd~~t~--~~~~~~~~~-------~~v~sl~~s---~~---g~~l~~~sG~~dg~I~Iwd~~~~~~~~~l~---- 551 (609)
-+|.+||+.++ +.++.+... +.+..+.+. +. +.-++..+-...+.|.|+|+.+++.-..+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36788899988 888777542 357788887 22 234444445567899999998876655442
Q ss_pred ----------CC----CCCEEEEEEeCC----CCEEEEEECCCCEEEEEcC
Q psy4876 552 ----------GH----SARVLNLAMSPD----ETTVLSAGADETLRLWKIF 584 (609)
Q Consensus 552 ----------~h----~~~V~~l~~spd----g~~L~s~s~Dg~I~iWdl~ 584 (609)
|. ...|..|+++|+ +++|+-....+ -++|.+.
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~ 252 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVN 252 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEE
Confidence 10 246888999998 77777665543 2455554
No 383
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.65 E-value=62 Score=35.05 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=24.1
Q ss_pred cceeeeeeecCCCCeEEEEEccCCCEEEEE
Q psy4876 324 RAIDHLMDLEGNENVCSVAWIQEGYMLGVG 353 (609)
Q Consensus 324 ~~~~~l~~~~h~~~V~~v~~spdg~~Lasg 353 (609)
+++..+........++.++|+||++.|++.
T Consensus 519 g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 519 GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 666666666667899999999999888765
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=40.40 E-value=64 Score=35.76 Aligned_cols=71 Identities=11% Similarity=0.152 Sum_probs=43.3
Q ss_pred ccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCCCceeEEEcCCCCe--EEEEEcC---C-------CCeEEEEEecCCC
Q psy4876 467 AAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSSGACLDSIDTKSQV--CALLWNS---D-------YKELVSAHGFAQN 534 (609)
Q Consensus 467 ~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t~~~~~~~~~~~~v--~sl~~s~---~-------g~~l~~~sG~~dg 534 (609)
..|.++.+. ...+++.+ .|.++|+||+.+++++.+.+..... ..-...+ . +.++++-.-..+|
T Consensus 222 ~~Is~~~~~--~~fLftL~---~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G 296 (729)
T 3f7f_A 222 SVISCKLFH--ERYLIVLT---QNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENG 296 (729)
T ss_dssp CEEEEEEET--TTEEEEEE---TTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTC
T ss_pred ceEEEeccC--CcEEEEEE---cCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCC
Confidence 456666553 44566664 8999999999999999887642110 0000111 1 2445544445678
Q ss_pred eEEEEECC
Q psy4876 535 QLIIWKYP 542 (609)
Q Consensus 535 ~I~Iwd~~ 542 (609)
..++|++.
T Consensus 297 ~Fk~~~l~ 304 (729)
T 3f7f_A 297 LFQMGTLL 304 (729)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEE
Confidence 88899874
No 385
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=36.65 E-value=4.2e+02 Score=28.32 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=86.9
Q ss_pred cCCCCeEEEEEccC--CCEEEEEeCCC----cEEEEeCCCCCCCCCccceEeecC--CcccEEEEEEcCCCCcEEEEEec
Q psy4876 416 NHTQEVCGLKWSPD--GRYLASGGNDN----LLNIWSGVPGQHTFSTQPIHSLSR--HQAAVKAIAWCPWSPNVLASGGG 487 (609)
Q Consensus 416 ~h~~~V~~l~~spd--g~~lasgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~llasggG 487 (609)
+|...+....|.|+ |..++.+.+++ -..+.|..++ +.+..... +.+......|.|+.+-+=+.+
T Consensus 361 gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG------~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~-- 432 (591)
T 2zux_A 361 GHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATG------KILWGVYAGKDVGRGMAADIDPRYPGQEVWA-- 432 (591)
T ss_dssp CCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTC------CEEEEECCSSCCCCEEEECCCTTSSSCEEEE--
T ss_pred CCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCC------cEEEEcCCCCCCCceeEEecCCCCCceEEEe--
Confidence 78888888889886 45677766652 3556888888 55555433 344444555666544333322
Q ss_pred cCCCeEEEEECCCCceeEEEcCCCCeEEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEEeC-------CCCCEE
Q psy4876 488 TADRHIYFWNVSSGACLDSIDTKSQVCALLWNSDYKELVSAHGFAQNQLIIWKYPSLVK--VAELHG-------HSARVL 558 (609)
Q Consensus 488 s~Dg~I~iwd~~t~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~dg~I~Iwd~~~~~~--~~~l~~-------h~~~V~ 558 (609)
+. .+|+.. |+.+......+.-..+-|.-+...-+. ..+.|.-|+...++. +..+.+ ...+..
T Consensus 433 --~~--~l~~~~-G~~i~~~~p~~~N~~i~WdGDl~rell----d~~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l 503 (591)
T 2zux_A 433 --NG--SLYSAK-GVKIGSGVPSSTNFGIWWDGDLLREQL----DSNRIDKWDYQNGVSKNMLTASGAAANNGTKATPTL 503 (591)
T ss_dssp --TT--EEECTT-SCBCSSCCCSCCSEEECCSSSSSCEEE----ETTEEEEEETTTTEEEEEEECTTEECBSGGGCBCSE
T ss_pred --cC--ceECCC-CCEecCCCCCCcceeEEECCCCcHhhh----CCceEEecccCCCceeEEEeecccccCCCCCCCEee
Confidence 11 356643 444432211222346778877744444 246788899877763 333332 122333
Q ss_pred EEEEeCCCC-EEEEEECC-CCEEEEEcCCCccc
Q psy4876 559 NLAMSPDET-TVLSAGAD-ETLRLWKIFEKVKS 589 (609)
Q Consensus 559 ~l~~spdg~-~L~s~s~D-g~I~iWdl~~~~~~ 589 (609)
+..+--|.+ -|+..+.| ..|+||........
T Consensus 504 ~aDi~GDwREEvI~~t~D~~~LrIYtt~~pt~~ 536 (591)
T 2zux_A 504 QADLLGDWREEVVWRTEDSSALRIYTTTIPTEH 536 (591)
T ss_dssp EECCSSSSSCEEEEEETTSSEEEEECCCCCCSC
T ss_pred EEeccccCeeEEEEEeCCCCeEEEEeCCCCCcc
Confidence 444444432 44445555 46999987655543
No 386
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=35.74 E-value=3.8e+02 Score=27.54 Aligned_cols=172 Identities=10% Similarity=0.028 Sum_probs=87.0
Q ss_pred eEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCC-cccccccc--cccc-------ccceeeeee--ec---CC
Q psy4876 271 YLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSP-LVQELTSK--CIQD-------NRAIDHLMD--LE---GN 335 (609)
Q Consensus 271 ~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-------~~~~~~l~~--~~---h~ 335 (609)
.|..|+......++...+|.|+.|-.....+...-..... ....+... ...+ ......+.. +. ..
T Consensus 68 ~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~ 147 (473)
T 3of7_A 68 KIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEG 147 (473)
T ss_dssp CEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTT
T ss_pred CEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCC
Confidence 4666777777788999999999997765321110000000 00000000 0000 000111111 11 13
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEeCC---CCee------------EEEecC-CCCceEEEEecCCEEEEEecCCeE
Q psy4876 336 ENVCSVAWIQEGYMLGVGTSLGTVQLWDVS---AKKK------------CRTMDG-HDVRVGALAWNTYILSSGSRCGNI 399 (609)
Q Consensus 336 ~~V~~v~~spdg~~Lasgs~dg~I~iwd~~---~~~~------------~~~l~~-h~~~V~~l~~~~~~L~sgs~dg~I 399 (609)
..|..|+.. ....++-..+|.|..|-.. .+++ ...+.. ....|..|+......++-..+|.|
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v 225 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMV 225 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCE
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeE
Confidence 456555543 3455556778889888741 1110 111111 123588888877777777899999
Q ss_pred EEEEcCCCCee--------------EEEEccCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4876 400 VHHDVRSRDHK--------------VALLQNHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV 448 (609)
Q Consensus 400 ~iwd~~~~~~~--------------~~~~~~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~ 448 (609)
+.|-.....+. ...+ ....|..|+.. ..+.+.-..+|.|+.|-..
T Consensus 226 ~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n 284 (473)
T 3of7_A 226 FAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASG--ENHCFALTKDNKLVSWGLN 284 (473)
T ss_dssp EEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEEC--SSEEEEEETTSCEEEEEEC
T ss_pred EEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecC--CCeEEEEecCCCEEEeCCC
Confidence 99965432110 0011 11346655543 3455556678999999654
No 387
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=35.03 E-value=3e+02 Score=26.16 Aligned_cols=193 Identities=12% Similarity=0.029 Sum_probs=108.0
Q ss_pred CCEEEEEecCCeEEE---EEcCCCCeeEEEEccCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCCCCCCccceEee
Q psy4876 387 TYILSSGSRCGNIVH---HDVRSRDHKVALLQNHTQEVCGLKWSP-DGRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSL 462 (609)
Q Consensus 387 ~~~L~sgs~dg~I~i---wd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 462 (609)
.+.|+.-+..|.++- |++......- .+ .....|..+.... +..+++..+.+|.|+...+..-...........+
T Consensus 35 ~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll-~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~l 112 (276)
T 3no0_A 35 TEGLFLVSNRGRVYWIAGSQALQGSKVS-LK-SREEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKL 112 (276)
T ss_dssp TSCEEEEETTSEEEEECSHHHHTSEECC-CS-STTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCC
T ss_pred CCEEEEEcCCCeEEEEEhhhCccCcccc-cC-CCCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEec
Confidence 445666667777664 3333221111 12 2345666664421 4678999999999999887543200001111223
Q ss_pred cCCcccEEEEEEcCCCCcEEEEEeccCCCeEEEEECCC---------CceeEEEcCCCCeEEEEEcCCCCeEEEEEecCC
Q psy4876 463 SRHQAAVKAIAWCPWSPNVLASGGGTADRHIYFWNVSS---------GACLDSIDTKSQVCALLWNSDYKELVSAHGFAQ 533 (609)
Q Consensus 463 ~~h~~~V~~l~~sp~~~~llasggGs~Dg~I~iwd~~t---------~~~~~~~~~~~~v~sl~~s~~g~~l~~~sG~~d 533 (609)
.. ...+..+........+++.. ..|.+..++... |.....+.....|..+....++.+++.++ ..
T Consensus 113 ke-gD~l~~~~~~~~~~~ill~T---~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ll~~T--~~ 186 (276)
T 3no0_A 113 TE-GDEVVSIASSVDETHILLFT---KKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVIT--AK 186 (276)
T ss_dssp CT-TCCEEEEEECCSSCEEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSEEEEEE--TT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEE---CCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCEEEEEe--CC
Confidence 32 34555555555454566553 688888877532 21222233445677776666667777755 78
Q ss_pred CeEEEEECCC-------CceEEEEeCCCCCEEEEEEeCCCCEEEEEECCCCEEE--EEcCCCcc
Q psy4876 534 NQLIIWKYPS-------LVKVAELHGHSARVLNLAMSPDETTVLSAGADETLRL--WKIFEKVK 588 (609)
Q Consensus 534 g~I~Iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~L~s~s~Dg~I~i--Wdl~~~~~ 588 (609)
|.++...+.. +.-+..+ ...+.+..+....+...++..+.+|.+.. +++..-..
T Consensus 187 G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~ 249 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPL 249 (276)
T ss_dssp SCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCB
T ss_pred CcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCC
Confidence 8888887532 2222223 23455655554444557777888898888 87765443
No 388
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=30.76 E-value=5.2e+02 Score=27.58 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=89.4
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCCCCCccc------eEeec-------CCc-----cc-EEEEEEcCCCCcEEEEEeccCC
Q psy4876 430 GRYLASGGNDNLLNIWSGVPGQHTFSTQP------IHSLS-------RHQ-----AA-VKAIAWCPWSPNVLASGGGTAD 490 (609)
Q Consensus 430 g~~lasgs~Dg~I~iwd~~~~~~~~~~~~------~~~~~-------~h~-----~~-V~~l~~sp~~~~llasggGs~D 490 (609)
..++++|++||.++.+|.. ++..+...| +..+. .|. .+ +..+.+...-+.+|+.+-|.-.
T Consensus 85 ~~~VyvGaNDGmLHaF~a~-G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG 163 (570)
T 3hx6_A 85 APRVYVGANDGMLHGFDTD-GNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGG 163 (570)
T ss_dssp CCEEEEECSSSCEEECCSS-CCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSC
T ss_pred ccEEEEECCCceEEEECCC-CcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCC
Confidence 3588999999999999987 643222111 11110 121 11 2333332111234555434456
Q ss_pred CeEEEEECCC---CceeEEEcCC--------CCeEEEEEcCCCCeEEEEE-ec----CCCeEEEEECCCCceEEEEeCCC
Q psy4876 491 RHIYFWNVSS---GACLDSIDTK--------SQVCALLWNSDYKELVSAH-GF----AQNQLIIWKYPSLVKVAELHGHS 554 (609)
Q Consensus 491 g~I~iwd~~t---~~~~~~~~~~--------~~v~sl~~s~~g~~l~~~s-G~----~dg~I~Iwd~~~~~~~~~l~~h~ 554 (609)
+.++..|+.+ .+.+.++... -.-..|..-.+++++++.. |+ ....|+|.|+.++..+..+..-.
T Consensus 164 ~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~~~~ 243 (570)
T 3hx6_A 164 KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLEVTG 243 (570)
T ss_dssp SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEEECC
T ss_pred cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCccEEEEEECCCCceEEEEecCC
Confidence 6788888875 4455555411 0112344445677766553 32 24579999999999998874221
Q ss_pred -----CCEEEEEE-eCC--C--CEEEEEECCCCEEEEEcCCCcc
Q psy4876 555 -----ARVLNLAM-SPD--E--TTVLSAGADETLRLWKIFEKVK 588 (609)
Q Consensus 555 -----~~V~~l~~-spd--g--~~L~s~s~Dg~I~iWdl~~~~~ 588 (609)
..+..+.. ..| | ..++.|...|.|.=+|+.....
T Consensus 244 ~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 244 RTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIAGKV 287 (570)
T ss_dssp STTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSCSSC
T ss_pred CCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCCCCc
Confidence 22333332 233 3 4789999999998888887654
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=29.55 E-value=3.6e+02 Score=25.32 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=68.7
Q ss_pred ceeEEEEEecC-CCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccc-eeeeeeecCCCCeEEEEEccC
Q psy4876 269 DYYLNLIDWSH-FNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRA-IDHLMDLEGNENVCSVAWIQE 346 (609)
Q Consensus 269 ~~~v~~l~wsp-~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~h~~~V~~v~~spd 346 (609)
|..+..+..+. +.++..+..|.++-..+..-... ... |. +.....+..++.|.++....+
T Consensus 33 D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~------r~~------------G~~i~~~i~L~~~e~Iv~~~~~~~ 94 (256)
T 1zvt_A 33 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA------RGQ------------GEPLTGKLTLPPGATVDHMLMESD 94 (256)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS------SSC------------CEEGGGTCCCCTTCCEEEEECCCT
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc------CCC------------CeEeeeeecCCCCCEEEEEEEeCC
Confidence 44444444444 45888899998887766541100 000 11 112334445567777744445
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------CeeEEEecCCCCceEEEEe--cCCEEEEEecCCeEEEEEcC
Q psy4876 347 GYMLGVGTSLGTVQLWDVSA-------KKKCRTMDGHDVRVGALAW--NTYILSSGSRCGNIVHHDVR 405 (609)
Q Consensus 347 g~~Lasgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~--~~~~L~sgs~dg~I~iwd~~ 405 (609)
+.+|+.++..|.++...+.. +.....+.....-|..... ....++..+.+|.+..+.+.
T Consensus 95 ~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ 162 (256)
T 1zvt_A 95 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 162 (256)
T ss_dssp TCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHH
Confidence 67788899999999987742 2223333333222333333 24678888888988888765
No 390
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=28.36 E-value=5e+02 Score=26.61 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=86.5
Q ss_pred eeEEEEEecCCCeEEEEcCCeEEEEeCCCCCCCceEEecCCccccccccccccccceeeeeeecCCCCeEEEEEccCCCE
Q psy4876 270 YYLNLIDWSHFNVLAVALGGSIYLWNGESDSNSKYIICQSPLVQELTSKCIQDNRAIDHLMDLEGNENVCSVAWIQEGYM 349 (609)
Q Consensus 270 ~~v~~l~wsp~~lla~s~dg~I~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~V~~v~~spdg~~ 349 (609)
..|..|+......++...+|.|+.|-....... .+.+.... .........+..+ ....|..|+.. ...
T Consensus 148 ~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~G--qLG~~~~~-------~~~~~~P~~v~~l-~~~~i~~va~G--~~h 215 (473)
T 3of7_A 148 HKVVQLAATDNMSCALFSNGEVYAWGTFRCNEG--ILGFYQDK-------IKIQKTPWKVPTF-SKYNIVQLAPG--KDH 215 (473)
T ss_dssp CCEEEEEECSSEEEEEETTSCEEEEECEEETTE--EEESBTTT-------BSCEEEEEECCCC-CSSCEEEEEEC--SSE
T ss_pred CcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCC--ccCCCCCC-------CccccCcEEcccc-CCCCEEEEEec--CCe
Confidence 456677777777889999999999985210000 00000000 0000011111111 22346666643 456
Q ss_pred EEEEeCCCeEEEEeCCCCeeE---------------EEecCCCCceEEEEecCCEEEEEecCCeEEEEEcCCCCe-----
Q psy4876 350 LGVGTSLGTVQLWDVSAKKKC---------------RTMDGHDVRVGALAWNTYILSSGSRCGNIVHHDVRSRDH----- 409 (609)
Q Consensus 350 Lasgs~dg~I~iwd~~~~~~~---------------~~l~~h~~~V~~l~~~~~~L~sgs~dg~I~iwd~~~~~~----- 409 (609)
.++-+.+|.|..|-......+ ..+ ....|..|+......++-..+|.|+.|-.....+
T Consensus 216 s~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~--~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~ 293 (473)
T 3of7_A 216 ILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPF--GLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSE 293 (473)
T ss_dssp EEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEEC--SCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCS
T ss_pred EEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceec--CCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCC
Confidence 666778899999965432111 011 1146777777667777778899999996532110
Q ss_pred ------eE---EEEc-cCCCCeEEEEEccCCCEEEEEeCCCcEEEEeCC
Q psy4876 410 ------KV---ALLQ-NHTQEVCGLKWSPDGRYLASGGNDNLLNIWSGV 448 (609)
Q Consensus 410 ------~~---~~~~-~h~~~V~~l~~spdg~~lasgs~Dg~I~iwd~~ 448 (609)
.. ..+. .....|..|+.. ..+.+.-..||.|+.|-..
T Consensus 294 ~~~~~~~~~~P~~v~~~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 294 DVEDGALVTKPKRLALPDNVVIRSIAAG--EHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp CCCTTCEEEEEEECCCCTTCCEEEEEEC--SSEEEEEETTSCEEEEEEC
T ss_pred cccCCceeeccccccccCCccEEEEEeC--CCeEEEEeCCCeEEEEECC
Confidence 01 1111 112346655553 3344455678899999654
No 391
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=24.84 E-value=5.1e+02 Score=25.49 Aligned_cols=210 Identities=10% Similarity=0.030 Sum_probs=98.7
Q ss_pred CEEEEEeCCCeEEEEeCCC-CeeEEEe--cCCCCceEEEEec---CCEEEEEecCC----eEEEEEcCCCCeeEEEEcc-
Q psy4876 348 YMLGVGTSLGTVQLWDVSA-KKKCRTM--DGHDVRVGALAWN---TYILSSGSRCG----NIVHHDVRSRDHKVALLQN- 416 (609)
Q Consensus 348 ~~Lasgs~dg~I~iwd~~~-~~~~~~l--~~h~~~V~~l~~~---~~~L~sgs~dg----~I~iwd~~~~~~~~~~~~~- 416 (609)
..|.+|+..| +.+++... +.....+ ......|.+|+++ +..|.++...| .|...+ +.+. .-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~-tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGG-NWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTS-CCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCC-CceECCcc
Confidence 4677788877 55554332 2222221 1234678999995 46666666665 444432 2221 1111110
Q ss_pred -------------CCCCeEEEEEcc-C-CCEEEEEeCCCcEEEEeCCCCCCCCCccceEeec----------------CC
Q psy4876 417 -------------HTQEVCGLKWSP-D-GRYLASGGNDNLLNIWSGVPGQHTFSTQPIHSLS----------------RH 465 (609)
Q Consensus 417 -------------h~~~V~~l~~sp-d-g~~lasgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------------~h 465 (609)
....|.+|++.| + ...|..++..+.|...+-. +.. .+.+..+. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~t---W~~~~~~~~~p~~~~~~~~~~~g~~~ 175 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GAS---WEPVAGFNDHPMRRAWTGGEQDGTPD 175 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSB---CEECHHHHTCTTHHHHHCCC----CC
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCC---eEECcCccCCccccccccccccCCCC
Confidence 112577899987 2 4455555555656554322 211 11111110 12
Q ss_pred cccEEEEEEcCCC-CcEEEEEeccCCCeEEEEECCCCceeEEEcC--------------CCCeEEEEEcCCC-CeEEEEE
Q psy4876 466 QAAVKAIAWCPWS-PNVLASGGGTADRHIYFWNVSSGACLDSIDT--------------KSQVCALLWNSDY-KELVSAH 529 (609)
Q Consensus 466 ~~~V~~l~~sp~~-~~llasggGs~Dg~I~iwd~~t~~~~~~~~~--------------~~~v~sl~~s~~g-~~l~~~s 529 (609)
...|.+|.++|.. ..+++.. .++.|...+ ..|+.-..+.. ...+..+.+++.. ..+++++
T Consensus 176 ~~~i~~i~~d~~~~~~l~vg~---~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~ 251 (394)
T 3b7f_A 176 GPKMHSILVDPRDPKHLYIGM---SSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN 251 (394)
T ss_dssp CCEEEEEEECTTCTTCEEEEE---ETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred CCceeEEEECCCCCCEEEEEE---CCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence 2357899999853 3454433 234444332 22332222211 1247889999863 4555532
Q ss_pred ecCCCeEEEEECCCCceEEEEeC--CC---CCEEEEEEeCC-CCEEEEE
Q psy4876 530 GFAQNQLIIWKYPSLVKVAELHG--HS---ARVLNLAMSPD-ETTVLSA 572 (609)
Q Consensus 530 G~~dg~I~Iwd~~~~~~~~~l~~--h~---~~V~~l~~spd-g~~L~s~ 572 (609)
.+.|...+- .+..-..+.. .. ..+.+++++|. ...|..+
T Consensus 252 ---~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 252 ---HCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp ---TTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred ---CCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 344554442 2222222211 11 34567888763 3444444
Done!