BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy4877
         (120 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|322786583|gb|EFZ12978.1| hypothetical protein SINV_03332 [Solenopsis invicta]
          Length = 305

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/78 (64%), Positives = 54/78 (69%), Gaps = 14/78 (17%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR---PTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 208 IDKYLSVSKRMELSKCLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 265

Query: 85  G---------GGPLIFGA 93
                       PL+FGA
Sbjct: 266 TTQYPLLPYYAAPLMFGA 283



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 218 MELSKCLNLTEVQIKTWFQNRRTKWK 243


>gi|156549094|ref|XP_001607545.1| PREDICTED: homeobox protein MSX-1-like [Nasonia vitripennis]
          Length = 331

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 59/82 (71%), Gaps = 8/82 (9%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LKM AH +     FP   
Sbjct: 232 IDKYLSVSKRMELSKCLNLTEVQIKTWFQNRRTKWKKQLTSRLKM-AHRQ---GLFP--- 284

Query: 88  PLIFGAQHGSPTAPYFFSASML 109
           P  F A    P  PY+ +A+ L
Sbjct: 285 PAYFPATQ-YPLLPYYAAAAPL 305



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 242 MELSKCLNLTEVQIKTWFQNRRTKWK 267


>gi|328704025|ref|XP_003242379.1| PREDICTED: homeobox protein pv.1-like [Acyrthosiphon pisum]
          Length = 320

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/57 (80%), Positives = 49/57 (85%), Gaps = 3/57 (5%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
            DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQLASKLK +AH    G++ P
Sbjct: 186 TDKYLSVSKRMELSKALNLTEVQIKTWFQNRRTKWKKQLASKLK-IAHRH--GYFQP 239



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 196 MELSKALNLTEVQIKTWFQNRRTKWK 221


>gi|340725237|ref|XP_003400979.1| PREDICTED: hypothetical protein LOC100651502 [Bombus terrestris]
          Length = 387

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 53/75 (70%), Gaps = 10/75 (13%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR--PTGFYFPG 85
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+       P+ ++ P 
Sbjct: 287 IDKYLSVSKRMELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPSAYFPPA 346

Query: 86  --------GGPLIFG 92
                     PL+FG
Sbjct: 347 QYSLLPYYTTPLVFG 361



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 297 MELSKSLNLTEVQIKTWFQNRRTKWK 322


>gi|332017372|gb|EGI58114.1| Homeobox protein ceh-19 [Acromyrmex echinatior]
          Length = 307

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 53/77 (68%), Gaps = 14/77 (18%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR---PTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 210 IDKYLSVSKRMELSKCLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 267

Query: 85  G---------GGPLIFG 92
                       PL+FG
Sbjct: 268 TTQYPLLPYYAAPLMFG 284



 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 220 MELSKCLNLTEVQIKTWFQNRRTKWK 245


>gi|350403982|ref|XP_003486970.1| PREDICTED: hypothetical protein LOC100748877 [Bombus impatiens]
          Length = 432

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 58/89 (65%), Gaps = 11/89 (12%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR--PTGFYFPG 85
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+       P+ ++ P 
Sbjct: 332 IDKYLSVSKRMELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPSAYFPPA 391

Query: 86  GGPLIFGAQHGSP--TAPYFFSASMLDDS 112
              L+       P  T P  F  S  DD+
Sbjct: 392 QYSLL-------PYYTTPLVFGTSASDDA 413



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 342 MELSKSLNLTEVQIKTWFQNRRTKWK 367


>gi|307175871|gb|EFN65686.1| Homeobox protein ceh-19 [Camponotus floridanus]
          Length = 308

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 53/78 (67%), Gaps = 14/78 (17%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR---PTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 211 IDKYLSVSKRMELSKCLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 268

Query: 85  G---------GGPLIFGA 93
                       PL+FG 
Sbjct: 269 TTQYPLLPYYAAPLMFGG 286



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 221 MELSKCLNLTEVQIKTWFQNRRTKWK 246


>gi|383862479|ref|XP_003706711.1| PREDICTED: homeobox protein engrailed-2b-like [Megachile rotundata]
          Length = 329

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 53/77 (68%), Gaps = 14/77 (18%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN---RPTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 229 IDKYLSVSKRMELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 286

Query: 85  GG---------GPLIFG 92
                       PL+FG
Sbjct: 287 PAQYPLLPYYTAPLVFG 303



 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 239 MELSKSLNLTEVQIKTWFQNRRTKWK 264


>gi|307191995|gb|EFN75385.1| Homeobox protein ceh-19 [Harpegnathos saltator]
          Length = 188

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 54/78 (69%), Gaps = 14/78 (17%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN---RPTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 91  IDKYLSVSKRMELSKCLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 148

Query: 85  G---------GGPLIFGA 93
                       PL+FG+
Sbjct: 149 TTQYPLLPYYAAPLMFGS 166



 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 101 MELSKCLNLTEVQIKTWFQNRRTKWK 126


>gi|110763697|ref|XP_001122544.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like [Apis
           mellifera]
          Length = 208

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 57/88 (64%), Gaps = 11/88 (12%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR--PTGFYFPG 85
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+       P  ++ P 
Sbjct: 109 IDKYLSVSKRMELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPTYFPPA 168

Query: 86  GGPLIFGAQHGSP--TAPYFFSASMLDD 111
             PL+       P  TAP  F     DD
Sbjct: 169 QYPLL-------PYYTAPLVFGTPTSDD 189



 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 119 MELSKSLNLTEVQIKTWFQNRRTKWK 144


>gi|380016351|ref|XP_003692150.1| PREDICTED: homeobox protein engrailed-2b-like [Apis florea]
          Length = 331

 Score = 87.4 bits (215), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 54/78 (69%), Gaps = 14/78 (17%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR---PTGFYFP 84
           +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+        PT  YFP
Sbjct: 231 IDKYLSVSKRMELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGLFPPT--YFP 288

Query: 85  GG---------GPLIFGA 93
                       PL+FG+
Sbjct: 289 PAQYPLLPYYTTPLVFGS 306



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 32/41 (78%), Gaps = 1/41 (2%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKW-KYVDKYLSVSKRMEL 40
           MELSK LNLTEVQIKTWFQNRRTKW K +   L +++R  L
Sbjct: 241 MELSKSLNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQGL 281


>gi|91077640|ref|XP_974114.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
 gi|270002189|gb|EEZ98636.1| hypothetical protein TcasGA2_TC001164 [Tribolium castaneum]
          Length = 298

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/46 (89%), Positives = 43/46 (93%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           VDKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL ++LKM 
Sbjct: 199 VDKYLSVSKRMELSKALNLTEVQIKTWFQNRRTKWKKQLTTRLKMA 244



 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 209 MELSKALNLTEVQIKTWFQNRRTKWK 234


>gi|242025100|ref|XP_002432964.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
 gi|212518473|gb|EEB20226.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
          Length = 141

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 44/49 (89%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
          +DKYLSVSKRMELSK LNLTEVQIKTWFQNRRTKWKKQL S+LK+   +
Sbjct: 43 IDKYLSVSKRMELSKALNLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRH 91



 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MELSK LNLTEVQIKTWFQNRRTKWK
Sbjct: 53 MELSKALNLTEVQIKTWFQNRRTKWK 78


>gi|386771660|ref|NP_001246894.1| CG34031 [Drosophila melanogaster]
 gi|383292087|gb|AFH04565.1| CG34031 [Drosophila melanogaster]
          Length = 219

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 60/90 (66%), Gaps = 16/90 (17%)

Query: 8   NLTEVQIKTWFQNRRTKWKY-------------VDKYLSVSKRMELSKLLNLTEVQIKTW 54
           NL E Q++  F +R+ +  Y             +DKYLSVSKR+ELSK L+LTEVQ+KTW
Sbjct: 121 NLQEKQLRKRFTDRKPRQAYSASQLERLENEFNLDKYLSVSKRVELSKSLSLTEVQVKTW 180

Query: 55  FQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           FQNRRTKWKKQL S+LK +AH    G + P
Sbjct: 181 FQNRRTKWKKQLTSRLK-IAHRH--GLWIP 207



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELSK L+LTEVQ+KTWFQNRRTKWK
Sbjct: 164 VELSKSLSLTEVQVKTWFQNRRTKWK 189


>gi|391337760|ref|XP_003743233.1| PREDICTED: uncharacterized protein LOC100900118 [Metaseiulus
           occidentalis]
          Length = 698

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 42/46 (91%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +DKYLSVSKRMELS  LNLTEVQIKTWFQNRRTKWKKQ+ +K+KM 
Sbjct: 134 IDKYLSVSKRMELSAALNLTEVQIKTWFQNRRTKWKKQMTAKVKMA 179



 Score = 54.3 bits (129), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MELS  LNLTEVQIKTWFQNRRTKWK
Sbjct: 144 MELSAALNLTEVQIKTWFQNRRTKWK 169


>gi|357607811|gb|EHJ65696.1| hypothetical protein KGM_16361 [Danaus plexippus]
          Length = 310

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 55/80 (68%), Gaps = 9/80 (11%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           +DKYLSVSKR+ELSK L LTEVQIKTWFQNRRTKWKKQL S+LK+       G  FPG  
Sbjct: 222 LDKYLSVSKRLELSKALGLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRQ---GL-FPGH- 276

Query: 88  PLIFGA--QHGSPTAPYFFS 105
             IFG   Q  S   PY +S
Sbjct: 277 --IFGHAPQTYSLINPYTYS 294



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELSK L LTEVQIKTWFQNRRTKWK
Sbjct: 232 LELSKALGLTEVQIKTWFQNRRTKWK 257


>gi|170051656|ref|XP_001861864.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167872820|gb|EDS36203.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 268

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 51/67 (76%), Gaps = 6/67 (8%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           DKYLSVSKR+ELSK L+LTEVQIKTWFQNRRTKWKKQL S+LK +AH +  G Y   GG 
Sbjct: 161 DKYLSVSKRLELSKSLSLTEVQIKTWFQNRRTKWKKQLTSRLK-IAHRQ--GLY---GGA 214

Query: 89  LIFGAQH 95
           L     H
Sbjct: 215 LAGQHHH 221



 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 25/26 (96%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELSK L+LTEVQIKTWFQNRRTKWK
Sbjct: 170 LELSKSLSLTEVQIKTWFQNRRTKWK 195


>gi|308452275|ref|XP_003088980.1| CRE-CEH-19 protein [Caenorhabditis remanei]
 gi|308244111|gb|EFO88063.1| CRE-CEH-19 protein [Caenorhabditis remanei]
          Length = 220

 Score = 79.0 bits (193), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPT----GFYFP 84
           DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ +    PT    G  FP
Sbjct: 128 DKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQMCKEVPTNPVVGVPFP 187

Query: 85  G 85
            
Sbjct: 188 A 188



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 137 IQLSQTLNLTETQIKTWFQNRRTKWK 162


>gi|390347693|ref|XP_001177706.2| PREDICTED: uncharacterized protein LOC752256 [Strongylocentrotus
           purpuratus]
          Length = 436

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/46 (78%), Positives = 40/46 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
            DKYLSVSKR+ELS  LNLTE QIKTWFQNRRTKWKKQ+ ++LKM 
Sbjct: 298 ADKYLSVSKRLELSMSLNLTETQIKTWFQNRRTKWKKQMMARLKMA 343



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELS  LNLTE QIKTWFQNRRTKWK
Sbjct: 308 LELSMSLNLTETQIKTWFQNRRTKWK 333


>gi|71986877|ref|NP_001023141.1| Protein CEH-19, isoform a [Caenorhabditis elegans]
 gi|351060099|emb|CCD67721.1| Protein CEH-19, isoform a [Caenorhabditis elegans]
          Length = 122

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ +  + PT 
Sbjct: 38 TDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQMVKDAPTS 90



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          ++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 48 IQLSQTLNLTETQIKTWFQNRRTKWK 73


>gi|71986884|ref|NP_001023142.1| Protein CEH-19, isoform b [Caenorhabditis elegans]
 gi|21431767|sp|P26797.2|HM19_CAEEL RecName: Full=Homeobox protein ceh-19
 gi|351060100|emb|CCD67722.1| Protein CEH-19, isoform b [Caenorhabditis elegans]
          Length = 199

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
            DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ +  + PT 
Sbjct: 115 TDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQMVKDAPTS 167



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 125 IQLSQTLNLTETQIKTWFQNRRTKWK 150


>gi|6807|emb|CAA77838.1| pceh16-1 protein [Caenorhabditis elegans]
          Length = 130

 Score = 77.4 bits (189), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ +  + PT 
Sbjct: 46 TDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQMVKDAPTS 98



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          ++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 56 IQLSQTLNLTETQIKTWFQNRRTKWK 81


>gi|291227447|ref|XP_002733707.1| PREDICTED: BarH-like homeobox 2-like, partial [Saccoglossus
           kowalevskii]
          Length = 273

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 40/45 (88%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           DKYLSVSKR+ELS  LNLTE QIKTWFQNRRTKWKKQ+ +++K+ 
Sbjct: 170 DKYLSVSKRLELSMALNLTETQIKTWFQNRRTKWKKQMTARMKIA 214



 Score = 51.2 bits (121), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/26 (84%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELS  LNLTE QIKTWFQNRRTKWK
Sbjct: 179 LELSMALNLTETQIKTWFQNRRTKWK 204


>gi|268552769|ref|XP_002634367.1| C. briggsae CBR-CEH-19 protein [Caenorhabditis briggsae]
          Length = 209

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 50/72 (69%), Gaps = 8/72 (11%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
           ++++ FQN        DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ 
Sbjct: 108 RLESEFQN--------DKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQ 159

Query: 73  VAHNRPTGFYFP 84
           +    P+    P
Sbjct: 160 MCKEVPSTPVVP 171



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 125 IQLSQTLNLTETQIKTWFQNRRTKWK 150


>gi|341903907|gb|EGT59842.1| CBN-CEH-19 protein [Caenorhabditis brenneri]
          Length = 204

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 3/60 (5%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH---NRPTGFYFPG 85
           DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL + ++ +     + P G  FP 
Sbjct: 114 DKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTTSIRQMCKEVPSTPVGVPFPA 173



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 29/37 (78%), Gaps = 3/37 (8%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKR 37
           ++LS+ LNLTE QIKTWFQNRRTKWK   K L+ S R
Sbjct: 123 IQLSQTLNLTETQIKTWFQNRRTKWK---KQLTTSIR 156


>gi|260816453|ref|XP_002602985.1| absent from olfactores homeobox [Branchiostoma floridae]
 gi|229288300|gb|EEN58997.1| absent from olfactores homeobox [Branchiostoma floridae]
          Length = 267

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 42/45 (93%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           DKYLSVSKR+EL++ L LTE+Q+KTWFQNRRTKWKKQ A++++M+
Sbjct: 162 DKYLSVSKRVELAESLELTEIQVKTWFQNRRTKWKKQTAARMRML 206



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL++ L LTE+Q+KTWFQNRRTKWK
Sbjct: 171 VELAESLELTEIQVKTWFQNRRTKWK 196


>gi|56718239|gb|AAW24455.1| CG13424-related protein 2 [Oikopleura dioica]
          Length = 419

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           +KYLSV+KRMELSK LNLTE QIK WFQNRRTKWK++  S  ++ AH     +Y  G G
Sbjct: 219 NKYLSVAKRMELSKALNLTETQIKIWFQNRRTKWKREYLSDWELWAHQ---NYYAMGVG 274



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 27/33 (81%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           MELSK LNLTE QIK WFQNRRTKWK   +YLS
Sbjct: 228 MELSKALNLTETQIKIWFQNRRTKWKR--EYLS 258


>gi|313233933|emb|CBY10101.1| unnamed protein product [Oikopleura dioica]
          Length = 419

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           +KYLSV+KRMELSK LNLTE QIK WFQNRRTKWK++  S  ++ AH     +Y  G G
Sbjct: 219 NKYLSVAKRMELSKALNLTETQIKIWFQNRRTKWKREYLSDWELWAHQ---NYYAMGVG 274



 Score = 53.5 bits (127), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 27/33 (81%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           MELSK LNLTE QIK WFQNRRTKWK   +YLS
Sbjct: 228 MELSKALNLTETQIKIWFQNRRTKWKR--EYLS 258


>gi|260835892|ref|XP_002612941.1| linked to engrailed and distalless homeobox a [Branchiostoma
           floridae]
 gi|229298323|gb|EEN68950.1| linked to engrailed and distalless homeobox a [Branchiostoma
           floridae]
          Length = 282

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           +KYLSV+KR+ELS  L LTE QIK WFQNRRTKWK++  + L+++AH
Sbjct: 165 NKYLSVTKRLELSNQLKLTETQIKIWFQNRRTKWKRKFTNDLELMAH 211



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELS  L LTE QIK WFQNRRTKWK
Sbjct: 174 LELSNQLKLTETQIKIWFQNRRTKWK 199


>gi|307172025|gb|EFN63619.1| BarH-like 1 homeobox protein [Camponotus floridanus]
          Length = 341

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 203 NKYLSVAKRLQLSKNLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 262

Query: 89  LIFG 92
           +  G
Sbjct: 263 IFVG 266



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 212 LQLSKNLKLTETQIKIWFQNRRTKWK 237


>gi|383857811|ref|XP_003704397.1| PREDICTED: uncharacterized protein LOC100875048 [Megachile
           rotundata]
          Length = 330

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 193 NKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 252

Query: 89  LIFG 92
           +  G
Sbjct: 253 IFVG 256



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 202 LQLSKSLKLTETQIKIWFQNRRTKWK 227


>gi|307198461|gb|EFN79395.1| BarH-like 1 homeobox protein [Harpegnathos saltator]
          Length = 231

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 94  NKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 153

Query: 89  LIFG 92
           +  G
Sbjct: 154 IFVG 157



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 103 LQLSKSLKLTETQIKIWFQNRRTKWK 128


>gi|242003826|ref|XP_002436222.1| homeobox protein B-H2, putative [Ixodes scapularis]
 gi|215499558|gb|EEC09052.1| homeobox protein B-H2, putative [Ixodes scapularis]
          Length = 207

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 9/88 (10%)

Query: 1   MELSKLLNLTEVQ-IKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
           MEL+  LNLT+ Q ++  F+ +        KYLSV  RMEL+  LNLT+ Q+KTW+QNRR
Sbjct: 41  MELAAKLNLTDTQTLEKSFERQ--------KYLSVQDRMELAAKLNLTDTQVKTWYQNRR 92

Query: 60  TKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           TKWK+Q    L+++         +PG G
Sbjct: 93  TKWKRQAMVGLELLPGMGAMPGLWPGAG 120


>gi|260835894|ref|XP_002612942.1| linked to engrailed and distalless homeobox b [Branchiostoma
           floridae]
 gi|229298324|gb|EEN68951.1| linked to engrailed and distalless homeobox b [Branchiostoma
           floridae]
          Length = 282

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           +KYLSV+KR+ELS  L LTE QIK WFQNRRTKWK++  + L+++AH
Sbjct: 167 NKYLSVTKRLELSNQLKLTETQIKIWFQNRRTKWKRKYTNDLELLAH 213



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +ELS  L LTE QIK WFQNRRTKWK
Sbjct: 176 LELSNQLKLTETQIKIWFQNRRTKWK 201


>gi|432876077|ref|XP_004072965.1| PREDICTED: barH-like 1 homeobox protein-like [Oryzias latipes]
          Length = 242

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 4/83 (4%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR----PTGFYFPG 85
           KYLSV  R+EL+  L L++ Q+KTW+QNRRTKWK+Q A+ L+++A       PT F  P 
Sbjct: 147 KYLSVQDRIELAASLQLSDTQVKTWYQNRRTKWKRQSAAGLELLASTDKMFLPTHFLCPP 206

Query: 86  GGPLIFGAQHGSPTAPYFFSASM 108
             P++    + SP   Y    ++
Sbjct: 207 TSPIVDSYLYRSPAHHYCHPTAL 229



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 155 IELAASLQLSDTQVKTWYQNRRTKWK 180


>gi|322796729|gb|EFZ19162.1| hypothetical protein SINV_10865 [Solenopsis invicta]
          Length = 196

 Score = 68.6 bits (166), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 59  NKYLSVAKRLQLSKNLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 118

Query: 89  LIFG 92
           +  G
Sbjct: 119 IFVG 122



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 68 LQLSKNLKLTETQIKIWFQNRRTKWK 93


>gi|410930063|ref|XP_003978418.1| PREDICTED: barH-like 1 homeobox protein-like [Takifugu rubripes]
          Length = 325

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 51/88 (57%), Gaps = 24/88 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A    TG Y      F
Sbjct: 196 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---TGNYAALQRMF 252

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASMLDD 111
           P               +PYF+  S++ +
Sbjct: 253 P---------------SPYFYPQSLVSN 265



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 204 MELAASLNLTDTQVKTWYQNRRTKWK 229


>gi|351697285|gb|EHB00204.1| BarH-like 1 homeobox protein [Heterocephalus glaber]
          Length = 343

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQAAVGLELLAE 246



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|332019565|gb|EGI60044.1| BarH-like 1 homeobox protein [Acromyrmex echinatior]
          Length = 341

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 43/64 (67%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + +++ A    +    P   P
Sbjct: 205 NKYLSVAKRLQLSKNLKLTETQIKIWFQNRRTKWKRKYTNDVELFAQQYYSSLGIPAPRP 264

Query: 89  LIFG 92
           +  G
Sbjct: 265 IFVG 268



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 214 LQLSKNLKLTETQIKIWFQNRRTKWK 239


>gi|158293105|ref|XP_001688571.1| Anopheles gambiae str. PEST AGAP012428-PA [Anopheles gambiae str.
           PEST]
 gi|157016875|gb|EDO64025.1| AGAP012428-PA [Anopheles gambiae str. PEST]
          Length = 279

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 8/86 (9%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP----- 84
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A     G Y       
Sbjct: 48  KYLSVQDRMELANKLGLSDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYAAFQRLY 104

Query: 85  GGGPLIFGAQHGSPTAPYFFSASMLD 110
           GG P I    + +P+ P   S S +D
Sbjct: 105 GGPPYIGAWPYPTPSGPPGTSQSAVD 130



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 56 MELANKLGLSDTQVKTWYQNRRTKWK 81


>gi|444519233|gb|ELV12671.1| BarH-like 1 homeobox protein [Tupaia chinensis]
          Length = 383

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|109109964|ref|XP_001118474.1| PREDICTED: barH-like 1 homeobox protein-like [Macaca mulatta]
          Length = 489

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|431898942|gb|ELK07312.1| BarH-like 1 homeobox protein [Pteropus alecto]
          Length = 331

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 49.3 bits (116), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|395506277|ref|XP_003757461.1| PREDICTED: barH-like 1 homeobox protein [Sarcophilus harrisii]
          Length = 337

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|157118923|ref|XP_001659250.1| homeobox protein b [Aedes aegypti]
 gi|108875533|gb|EAT39758.1| AAEL008466-PA [Aedes aegypti]
          Length = 296

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 12/81 (14%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP----- 84
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A     G Y       
Sbjct: 67  KYLSVQDRMELANKLGLSDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYAAFQRLY 123

Query: 85  GGGPLIFG----AQHGSPTAP 101
           GG P + G    AQ G P AP
Sbjct: 124 GGPPYLGGWPYPAQAGPPGAP 144



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 75  MELANKLGLSDTQVKTWYQNRRTKWK 100


>gi|126297811|ref|XP_001365247.1| PREDICTED: barH-like 1 homeobox protein-like [Monodelphis
           domestica]
          Length = 327

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|329664576|ref|NP_001193177.1| barH-like 1 homeobox protein [Bos taurus]
 gi|296482131|tpg|DAA24246.1| TPA: BarH-like homeobox 1-like [Bos taurus]
          Length = 327

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|395844350|ref|XP_003794925.1| PREDICTED: barH-like 1 homeobox protein [Otolemur garnettii]
          Length = 327

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|355567382|gb|EHH23723.1| hypothetical protein EGK_07256 [Macaca mulatta]
          Length = 327

 Score = 68.2 bits (165), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|332255423|ref|XP_003276831.1| PREDICTED: barH-like 1 homeobox protein [Nomascus leucogenys]
 gi|402896224|ref|XP_003911206.1| PREDICTED: barH-like 1 homeobox protein [Papio anubis]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|440900099|gb|ELR51305.1| BarH-like 1 homeobox protein, partial [Bos grunniens mutus]
          Length = 306

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|403289667|ref|XP_003935967.1| PREDICTED: barH-like 1 homeobox protein [Saimiri boliviensis
           boliviensis]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|397503818|ref|XP_003822515.1| PREDICTED: barH-like 1 homeobox protein [Pan paniscus]
          Length = 566

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|345805915|ref|XP_548404.3| PREDICTED: BarH-like homeobox 1 [Canis lupus familiaris]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|14149728|ref|NP_064448.1| barH-like 1 homeobox protein [Homo sapiens]
 gi|114627324|ref|XP_001168385.1| PREDICTED: BarH-like homeobox 1 [Pan troglodytes]
 gi|426363388|ref|XP_004048822.1| PREDICTED: barH-like 1 homeobox protein [Gorilla gorilla gorilla]
 gi|29336920|sp|Q9BZE3.1|BARH1_HUMAN RecName: Full=BarH-like 1 homeobox protein
 gi|12276173|gb|AAG50279.1|AF325688_1 BarH-like 1 protein [Homo sapiens]
 gi|14029398|gb|AAK52674.1|AF321618_1 BARHL1 [Homo sapiens]
 gi|16549407|dbj|BAB70807.1| unnamed protein product [Homo sapiens]
 gi|119608411|gb|EAW88005.1| BarH-like 1 (Drosophila) [Homo sapiens]
 gi|208965850|dbj|BAG72939.1| BarH-like homeobox 1 [synthetic construct]
 gi|223460174|gb|AAI36957.1| BarH-like homeobox 1 [Homo sapiens]
 gi|223460178|gb|AAI36970.1| BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|344271439|ref|XP_003407546.1| PREDICTED: barH-like 1 homeobox protein [Loxodonta africana]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|296191068|ref|XP_002743465.1| PREDICTED: barH-like 1 homeobox protein [Callithrix jacchus]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|194033723|ref|XP_001929470.1| PREDICTED: BarH-like homeobox 1 [Sus scrofa]
          Length = 327

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|426226069|ref|XP_004007177.1| PREDICTED: barH-like 1 homeobox protein [Ovis aries]
          Length = 363

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|348570148|ref|XP_003470859.1| PREDICTED: barH-like 1 homeobox protein-like [Cavia porcellus]
          Length = 327

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|194225964|ref|XP_001917858.1| PREDICTED: barH-like 1 homeobox protein [Equus caballus]
          Length = 327

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|355752973|gb|EHH57019.1| hypothetical protein EGM_06576, partial [Macaca fascicularis]
          Length = 290

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 191 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 236



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 199 MELAASLNLTDTQVKTWYQNRRTKWK 224


>gi|148676454|gb|EDL08401.1| BarH-like 1 (Drosophila), isoform CRA_b [Mus musculus]
          Length = 351

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 225 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 270



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 233 MELAASLNLTDTQVKTWYQNRRTKWK 258


>gi|440892040|gb|ELR45413.1| BarH-like 2 homeobox protein, partial [Bos grunniens mutus]
          Length = 381

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 251 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 307

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 308 P---------------SPYFYHPSLL 318



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 259 MDLAAALNLTDTQVKTWYQNRRTKWK 284


>gi|9506423|ref|NP_062319.1| barH-like 1 homeobox protein [Mus musculus]
 gi|16923956|ref|NP_476450.1| barH-like 1 homeobox protein [Rattus norvegicus]
 gi|255958266|ref|NP_001157658.1| barH-like 1 homeobox protein [Mus musculus]
 gi|52783536|sp|P63156.1|BARH1_RAT RecName: Full=BarH-like 1 homeobox protein; AltName: Full=Bar-class
           homeodomain protein MBH2; AltName: Full=BarH-related
           homeobox protein 1
 gi|52783539|sp|P63157.1|BARH1_MOUSE RecName: Full=BarH-like 1 homeobox protein; AltName: Full=Bar-class
           homeodomain protein MBH2; AltName: Full=BarH-related
           homeobox protein 1
 gi|14279212|gb|AAK58534.1|AF264026_1 barH-related homeobox protein 1 BHX1 [Mus musculus]
 gi|8217344|emb|CAB92529.1| BARHL1 protein [Mus musculus]
 gi|11463945|dbj|BAB18599.1| Bar-class homeodomain protein MBH2 [Mus musculus]
 gi|11463947|dbj|BAB18600.1| Bar-class homeodomain protein MBH2 [Rattus norvegicus]
 gi|33417237|gb|AAH55731.1| Barhl1 protein [Mus musculus]
 gi|148676453|gb|EDL08400.1| BarH-like 1 (Drosophila), isoform CRA_a [Mus musculus]
 gi|148676455|gb|EDL08402.1| BarH-like 1 (Drosophila), isoform CRA_a [Mus musculus]
 gi|149039173|gb|EDL93393.1| BarH-like 1 (Drosophila), isoform CRA_a [Rattus norvegicus]
 gi|149039174|gb|EDL93394.1| BarH-like 1 (Drosophila), isoform CRA_a [Rattus norvegicus]
          Length = 327

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|118343904|ref|NP_001071776.1| transcription factor protein [Ciona intestinalis]
 gi|70570380|dbj|BAE06589.1| transcription factor protein [Ciona intestinalis]
          Length = 597

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           + +KYLSV KRMELSK L LTE QIK WFQNRRTKWK++  S+ ++ AH
Sbjct: 290 HRNKYLSVGKRMELSKALKLTETQIKIWFQNRRTKWKREYLSEWEVWAH 338



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/33 (75%), Positives = 26/33 (78%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           MELSK L LTE QIK WFQNRRTKWK   +YLS
Sbjct: 301 MELSKALKLTETQIKIWFQNRRTKWKR--EYLS 331


>gi|426218803|ref|XP_004003626.1| PREDICTED: LOW QUALITY PROTEIN: barH-like 2 homeobox protein [Ovis
           aries]
          Length = 350

 Score = 67.4 bits (163), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 222 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 278

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 279 P---------------SPYFYHPSLL 289



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 230 MDLAAALNLTDTQVKTWYQNRRTKWK 255


>gi|347360889|ref|NP_001018142.1| barH-like 1 homeobox protein [Danio rerio]
 gi|46399182|gb|AAS92236.1| BarH-class homeodomain transcription factor [Danio rerio]
          Length = 323

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 197 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 242



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 205 MELAASLNLTDTQVKTWYQNRRTKWK 230


>gi|350403347|ref|XP_003486774.1| PREDICTED: homeobox protein MSX-1-like [Bombus impatiens]
          Length = 331

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 194 NKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 253

Query: 89  L 89
           +
Sbjct: 254 I 254



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 203 LQLSKSLKLTETQIKIWFQNRRTKWK 228


>gi|194211121|ref|XP_001493763.2| PREDICTED: LOW QUALITY PROTEIN: barH-like 2 homeobox protein-like
           [Equus caballus]
          Length = 383

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 251 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 307

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 308 P---------------SPYFYHPSLL 318



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 259 MDLAAALNLTDTQVKTWYQNRRTKWK 284


>gi|340723371|ref|XP_003400063.1| PREDICTED: homeobox protein MSX-1-like [Bombus terrestris]
          Length = 331

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 43/61 (70%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR++LSK L LTE QIK WFQNRRTKWK++  + ++++A    +    P   P
Sbjct: 194 NKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRP 253

Query: 89  L 89
           +
Sbjct: 254 I 254



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++LSK L LTE QIK WFQNRRTKWK
Sbjct: 203 LQLSKSLKLTETQIKIWFQNRRTKWK 228


>gi|297685582|ref|XP_002820367.1| PREDICTED: barH-like 1 homeobox protein [Pongo abelii]
          Length = 333

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 207 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 252



 Score = 48.5 bits (114), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 215 MELAASLNLTDTQVKTWYQNRRTKWK 240


>gi|301777980|ref|XP_002924413.1| PREDICTED: barH-like 1 homeobox protein-like [Ailuropoda
           melanoleuca]
          Length = 315

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|56699436|ref|NP_001005477.1| barH-like 2 homeobox protein [Mus musculus]
 gi|71658824|sp|Q8VIB5.2|BARH2_MOUSE RecName: Full=BarH-like 2 homeobox protein; AltName: Full=Bar-class
           homeodomain protein MBH1; AltName: Full=Homeobox protein
           B-H1
 gi|51873965|gb|AAH78444.1| BarH-like 2 (Drosophila) [Mus musculus]
 gi|148688239|gb|EDL20186.1| RIKEN cDNA E130309B19 [Mus musculus]
          Length = 384

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 309 P---------------SPYFYHPSLL 319



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285


>gi|51317918|gb|AAU00059.1| barH-class homeodomain transcription factor 3 [Danio rerio]
          Length = 299

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 178 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 223



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 186 MELAASLNLTDTQVKTWYQNRRTKWK 211


>gi|45387885|ref|NP_991303.1| barH-like 2 homeobox protein [Danio rerio]
 gi|37720879|gb|AAN60084.1| barH-class homeodomain transcription factor [Danio rerio]
          Length = 364

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 232 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 288

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 289 P---------------SPYFYHPSLL 299



 Score = 47.8 bits (112), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 240 MDLAAALNLTDTQVKTWYQNRRTKWK 265


>gi|123233004|emb|CAM16576.1| BarH-like 1.1 [Danio rerio]
 gi|190338786|gb|AAI62091.1| BarH-like 1.1 [Danio rerio]
 gi|190339220|gb|AAI62083.1| BarH-like 1.1 [Danio rerio]
          Length = 323

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 197 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 242



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 205 MELAASLNLTDTQVKTWYQNRRTKWK 230


>gi|354503108|ref|XP_003513623.1| PREDICTED: barH-like 1 homeobox protein-like [Cricetulus griseus]
          Length = 410

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 203 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 247



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 211 MELAASLNLTDTQVKTWYQNRRTKWK 236


>gi|344251035|gb|EGW07139.1| BarH-like 2 homeobox protein [Cricetulus griseus]
          Length = 410

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 309 P---------------SPYFYHPSLL 319



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285


>gi|301784979|ref|XP_002927904.1| PREDICTED: LOW QUALITY PROTEIN: barH-like 2 homeobox protein-like
           [Ailuropoda melanoleuca]
          Length = 375

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 250 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 306

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 307 P---------------SPYFYHPSLL 317



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 258 MDLAAALNLTDTQVKTWYQNRRTKWK 283


>gi|281354491|gb|EFB30075.1| hypothetical protein PANDA_013739 [Ailuropoda melanoleuca]
          Length = 305

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|161611956|gb|AAI55810.1| Barhl1.2 protein [Danio rerio]
          Length = 299

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 178 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 223



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 186 MELAASLNLTDTQVKTWYQNRRTKWK 211


>gi|301613464|ref|XP_002936232.1| PREDICTED: barH-like 1 homeobox protein-like [Xenopus (Silurana)
           tropicalis]
          Length = 325

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 199 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 244



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 207 MELAASLNLTDTQVKTWYQNRRTKWK 232


>gi|351707164|gb|EHB10083.1| BarH-like 2 homeobox protein [Heterocephalus glaber]
          Length = 381

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 249 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 305

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 306 P---------------SPYFYHPSLL 316



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 257 MDLAAALNLTDTQVKTWYQNRRTKWK 282


>gi|348513440|ref|XP_003444250.1| PREDICTED: barH-like 2 homeobox protein-like [Oreochromis
           niloticus]
          Length = 363

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 231 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 287

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 288 P---------------SPYFYHPSLL 298



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 239 MDLAAALNLTDTQVKTWYQNRRTKWK 264


>gi|149410630|ref|XP_001507472.1| PREDICTED: barH-like 2 homeobox protein-like [Ornithorhynchus
           anatinus]
          Length = 385

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 253 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSAPQTMF 309

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 310 P---------------SPYFYHPSLL 320



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 261 MDLAAALNLTDTQVKTWYQNRRTKWK 286


>gi|66911689|gb|AAH97030.1| BarH-like 2 [Danio rerio]
          Length = 364

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 232 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 288

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 289 P---------------SPYFYHPSLL 299



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 240 MDLAAALNLTDTQVKTWYQNRRTKWK 265


>gi|47218868|emb|CAG05634.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 358

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 229 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 285

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 286 P---------------SPYFYHPSLL 296



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 237 MDLAAALNLTDTQVKTWYQNRRTKWK 262


>gi|300796395|ref|NP_001179226.1| barH-like 2 homeobox protein [Bos taurus]
 gi|296489312|tpg|DAA31425.1| TPA: barH-like 2 homeobox protein-like [Bos taurus]
          Length = 380

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 248 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 304

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 305 P---------------SPYFYHPSLL 315



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 256 MDLAAALNLTDTQVKTWYQNRRTKWK 281


>gi|397473938|ref|XP_003808452.1| PREDICTED: barH-like 2 homeobox protein [Pan paniscus]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 311

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 312 P---------------SPYFYHPSLL 322



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288


>gi|395821789|ref|XP_003784215.1| PREDICTED: barH-like 2 homeobox protein [Otolemur garnettii]
          Length = 389

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 257 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 313

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 314 P---------------SPYFYHPSLL 324



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 265 MDLAAALNLTDTQVKTWYQNRRTKWK 290


>gi|390466182|ref|XP_002751107.2| PREDICTED: barH-like 2 homeobox protein [Callithrix jacchus]
          Length = 390

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 258 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 314

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 315 P---------------SPYFYHPSLL 325



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 266 MDLAAALNLTDTQVKTWYQNRRTKWK 291


>gi|344293546|ref|XP_003418483.1| PREDICTED: barH-like 2 homeobox protein-like [Loxodonta africana]
          Length = 379

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 247 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 303

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 304 P---------------SPYFYHPSLL 314



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 255 MDLAAALNLTDTQVKTWYQNRRTKWK 280


>gi|332221861|ref|XP_003260081.1| PREDICTED: barH-like 2 homeobox protein [Nomascus leucogenys]
          Length = 388

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 256 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 312

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 313 P---------------SPYFYHPSLL 323



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 264 MDLAAALNLTDTQVKTWYQNRRTKWK 289


>gi|311254804|ref|XP_003125961.1| PREDICTED: barH-like 2 homeobox protein-like [Sus scrofa]
          Length = 381

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 249 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 305

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 306 P---------------SPYFYHPSLL 316



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 257 MDLAAALNLTDTQVKTWYQNRRTKWK 282


>gi|348505196|ref|XP_003440147.1| PREDICTED: barH-like 1 homeobox protein-like [Oreochromis
           niloticus]
          Length = 325

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 196 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 241



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 204 MELAASLNLTDTQVKTWYQNRRTKWK 229


>gi|403283968|ref|XP_003933364.1| PREDICTED: barH-like 2 homeobox protein [Saimiri boliviensis
           boliviensis]
          Length = 361

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 229 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 285

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 286 P---------------SPYFYHPSLL 296



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 237 MDLAAALNLTDTQVKTWYQNRRTKWK 262


>gi|355745442|gb|EHH50067.1| hypothetical protein EGM_00832, partial [Macaca fascicularis]
          Length = 348

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 216 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 272

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 273 P---------------SPYFYHPSLL 283



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 224 MDLAAALNLTDTQVKTWYQNRRTKWK 249


>gi|297664465|ref|XP_002810664.1| PREDICTED: barH-like 2 homeobox protein [Pongo abelii]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 311

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 312 P---------------SPYFYHPSLL 322



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288


>gi|39930383|ref|NP_064447.1| barH-like 2 homeobox protein [Homo sapiens]
 gi|47117915|sp|Q9NY43.2|BARH2_HUMAN RecName: Full=BarH-like 2 homeobox protein
 gi|33243038|gb|AAQ01189.1| BARH-like 2 protein [Homo sapiens]
 gi|116496747|gb|AAI26442.1| BarH-like homeobox 2 [Homo sapiens]
 gi|116497233|gb|AAI26440.1| BarH-like homeobox 2 [Homo sapiens]
 gi|119593529|gb|EAW73123.1| BarH-like 2 (Drosophila) [Homo sapiens]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 311

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 312 P---------------SPYFYHPSLL 322



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288


>gi|354493771|ref|XP_003509013.1| PREDICTED: LOW QUALITY PROTEIN: barH-like 2 homeobox protein-like
           [Cricetulus griseus]
          Length = 381

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 309 P---------------SPYFYHPSLL 319



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285


>gi|291398531|ref|XP_002715913.1| PREDICTED: BarH-like homeobox 2 [Oryctolagus cuniculus]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 311

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 312 P---------------SPYFYHPSLL 322



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288


>gi|12621136|ref|NP_075245.1| barH-like 2 homeobox protein [Rattus norvegicus]
 gi|29336523|sp|O88181.1|BARH2_RAT RecName: Full=BarH-like 2 homeobox protein; AltName: Full=Bar-class
           homeodomain protein MBH1; AltName: Full=Homeobox protein
           B-H1
 gi|3452555|dbj|BAA32474.1| BarH-class homeodomain transcription factor [Rattus norvegicus]
 gi|149028608|gb|EDL83949.1| BarH-class homeodomain transcription factor [Rattus norvegicus]
          Length = 384

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 309 P---------------SPYFYHPSLL 319



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285


>gi|109009989|ref|XP_001089467.1| PREDICTED: BarH-like homeobox 2 [Macaca mulatta]
          Length = 388

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 256 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 312

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 313 P---------------SPYFYHPSLL 323



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 264 MDLAAALNLTDTQVKTWYQNRRTKWK 289


>gi|355558160|gb|EHH14940.1| hypothetical protein EGK_00955, partial [Macaca mulatta]
          Length = 343

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 211 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 267

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 268 P---------------SPYFYHPSLL 278



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 219 MDLAAALNLTDTQVKTWYQNRRTKWK 244


>gi|345801700|ref|XP_853271.2| PREDICTED: BarH-like homeobox 2 isoform 1 [Canis lupus familiaris]
          Length = 394

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 262 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 318

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 319 P---------------SPYFYHPSLL 329



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 270 MDLAAALNLTDTQVKTWYQNRRTKWK 295


>gi|410920732|ref|XP_003973837.1| PREDICTED: barH-like 2 homeobox protein-like [Takifugu rubripes]
          Length = 358

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 229 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 285

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 286 P---------------SPYFYHPSLL 296



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 237 MDLAAALNLTDTQVKTWYQNRRTKWK 262


>gi|348536152|ref|XP_003455561.1| PREDICTED: barH-like 1 homeobox protein-like [Oreochromis
           niloticus]
          Length = 297

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 4/65 (6%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR----PTGFYFPG 85
           KYLSV +RMEL+  L L++ Q+KTW+QNRRTKWK+Q A+ L+++A       PT + +P 
Sbjct: 160 KYLSVQERMELAASLQLSDTQVKTWYQNRRTKWKRQSAAGLELLAEASRMFLPTHYLYPP 219

Query: 86  GGPLI 90
             P +
Sbjct: 220 APPTM 224



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 168 MELAASLQLSDTQVKTWYQNRRTKWK 193


>gi|10185809|gb|AAG14451.1|AF283692_1 Bar homeobox protein XBH2, partial [Xenopus laevis]
          Length = 322

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 200 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 244



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 208 MELAASLNLTDTQVKTWYQNRRTKWK 233


>gi|291190106|ref|NP_001167081.1| BarH-like 1 homeobox protein [Salmo salar]
 gi|223648000|gb|ACN10758.1| BarH-like 1 homeobox protein [Salmo salar]
          Length = 323

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 198 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 242



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 206 MELAASLNLTDTQVKTWYQNRRTKWK 231


>gi|410967741|ref|XP_003990374.1| PREDICTED: barH-like 2 homeobox protein [Felis catus]
          Length = 351

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 219 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 275

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 276 P---------------SPYFYHPSLL 286



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 227 MDLAAALNLTDTQVKTWYQNRRTKWK 252


>gi|348586894|ref|XP_003479203.1| PREDICTED: barH-like 2 homeobox protein [Cavia porcellus]
          Length = 383

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 251 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 307

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 308 P---------------SPYFYHPSLL 318



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 259 MDLAAALNLTDTQVKTWYQNRRTKWK 284


>gi|301621633|ref|XP_002940151.1| PREDICTED: barH-like 2 homeobox protein-like [Xenopus (Silurana)
           tropicalis]
          Length = 359

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 227 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 283

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 284 P---------------SPYFYHPSLL 294



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 235 MDLAAALNLTDTQVKTWYQNRRTKWK 260


>gi|147903962|ref|NP_001082021.1| BarH-like homeobox 2 [Xenopus laevis]
 gi|10185807|gb|AAG14450.1|AF283691_1 Bar homeobox protein XBH1 [Xenopus laevis]
          Length = 365

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 233 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 289

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 290 P---------------SPYFYHPSLL 300



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 241 MDLAAALNLTDTQVKTWYQNRRTKWK 266


>gi|410033210|ref|XP_003949506.1| PREDICTED: LOW QUALITY PROTEIN: barH-like 2 homeobox protein [Pan
           troglodytes]
          Length = 387

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 299



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288


>gi|219521562|gb|AAI44434.1| BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 201 KYLSVQYRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246



 Score = 48.9 bits (115), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234


>gi|238637225|ref|NP_001154858.1| uncharacterized protein LOC100301951 [Xenopus laevis]
 gi|213625223|gb|AAI70112.1| Unknown (protein for MGC:196839) [Xenopus laevis]
          Length = 361

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 229 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 285

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 286 P---------------SPYFYHPSLL 296



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 237 MDLAAALNLTDTQVKTWYQNRRTKWK 262


>gi|431897066|gb|ELK06330.1| BarH-like 2 homeobox protein [Pteropus alecto]
          Length = 317

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 185 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 241

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 242 P---------------SPYFYHPSLL 252



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 193 MDLAAALNLTDTQVKTWYQNRRTKWK 218


>gi|402855201|ref|XP_003892223.1| PREDICTED: barH-like 2 homeobox protein [Papio anubis]
          Length = 372

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 240 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 296

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 297 P---------------SPYFYHPSLL 307



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 248 MDLAAALNLTDTQVKTWYQNRRTKWK 273


>gi|193712547|ref|XP_001944887.1| PREDICTED: hypothetical protein LOC100167500 [Acyrthosiphon pisum]
          Length = 365

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNL++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 152 KYLSVQDRMELAAKLNLSDTQVKTWYQNRRTKWKRQTAVGLELLA 196



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNL++ Q+KTW+QNRRTKWK
Sbjct: 160 MELAAKLNLSDTQVKTWYQNRRTKWK 185


>gi|194740848|ref|XP_001952902.1| GF17487 [Drosophila ananassae]
 gi|190625961|gb|EDV41485.1| GF17487 [Drosophila ananassae]
          Length = 728

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 4/88 (4%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           V KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKKQ        A ++ +     G  
Sbjct: 398 VKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQDNVTNNEAAEHKSSNANKTGAA 457

Query: 88  PLIFGAQHGSPTAPYFFSASMLDDSQSP 115
           P   GA+ G   AP   +++    S SP
Sbjct: 458 P---GAE-GDKRAPQGSNSTAGSASASP 481



 Score = 50.8 bits (120), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 409 EMAKLLNVTETQVKIWFQNRRTKWKKQD 436


>gi|242003830|ref|XP_002436223.1| homeobox protein, putative [Ixodes scapularis]
 gi|215499559|gb|EEC09053.1| homeobox protein, putative [Ixodes scapularis]
          Length = 243

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 64  KYLSVQDRMELAAKLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 109



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 72 MELAAKLNLTDTQVKTWYQNRRTKWK 97


>gi|224057463|ref|XP_002191132.1| PREDICTED: barH-like 2 homeobox protein [Taeniopygia guttata]
          Length = 306

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 174 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 218



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 182 MDLAAALNLTDTQVKTWYQNRRTKWK 207


>gi|426330308|ref|XP_004026160.1| PREDICTED: uncharacterized protein LOC101138743 [Gorilla gorilla
           gorilla]
          Length = 701

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 569 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 625

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 626 P---------------SPYFYHPSLL 636



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 577 MDLAAALNLTDTQVKTWYQNRRTKWK 602


>gi|21953232|emb|CAD19778.1| Bar protein [Oryzias latipes]
          Length = 204

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 108 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 153



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 116 MELAASLNLTDTQVKTWYQNRRTKWK 141


>gi|449269037|gb|EMC79846.1| BarH-like 1 homeobox protein, partial [Columba livia]
          Length = 190

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 117 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 162



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 125 MELAASLNLTDTQVKTWYQNRRTKWK 150


>gi|33417000|gb|AAH55789.1| Barhl2 protein [Mus musculus]
          Length = 263

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y      F
Sbjct: 131 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 187

Query: 84  PGGGPLIFGAQHGSPTAPYFFSASML 109
           P               +PYF+  S+L
Sbjct: 188 P---------------SPYFYHPSLL 198



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 139 MDLAAALNLTDTQVKTWYQNRRTKWK 164


>gi|8216978|emb|CAB92439.1| BARHL1 protein [Homo sapiens]
          Length = 171

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 12/82 (14%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y       
Sbjct: 45  KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNY------- 94

Query: 90  IFGAQHGSPTAPYFFSASMLDD 111
               Q   P+ PYF+  S++ +
Sbjct: 95  -SALQRMFPS-PYFYPQSLVSN 114



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 53 MELAASLNLTDTQVKTWYQNRRTKWK 78


>gi|395530401|ref|XP_003767284.1| PREDICTED: barH-like 2 homeobox protein [Sarcophilus harrisii]
          Length = 313

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 181 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 225



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 189 MDLAAALNLTDTQVKTWYQNRRTKWK 214


>gi|26339118|dbj|BAC33230.1| unnamed protein product [Mus musculus]
          Length = 184

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 12/82 (14%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A     G Y       
Sbjct: 58  KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNY------- 107

Query: 90  IFGAQHGSPTAPYFFSASMLDD 111
               Q   P+ PYF+  S++ +
Sbjct: 108 -SALQRMFPS-PYFYPQSLVSN 127



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 66 MELAASLNLTDTQVKTWYQNRRTKWK 91


>gi|260803023|ref|XP_002596391.1| BarH-like 1 homeobox protein [Branchiostoma floridae]
 gi|229281646|gb|EEN52403.1| BarH-like 1 homeobox protein [Branchiostoma floridae]
          Length = 311

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 199 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQNALGLELLA 243



 Score = 48.5 bits (114), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 207 MELAASLNLTDTQVKTWYQNRRTKWK 232


>gi|443686663|gb|ELT89857.1| hypothetical protein CAPTEDRAFT_174957 [Capitella teleta]
          Length = 180

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 58  KYLSVQDRMELAAKLNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 102



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 66 MELAAKLNLTDTQVKTWYQNRRTKWK 91


>gi|308220044|gb|ADO22594.1| ANTP class homeobox transcription factor ANTP19 [Mnemiopsis leidyi]
 gi|308220056|gb|ADO22600.1| ANTP class homeobox transcription factor ANTP47 [Mnemiopsis leidyi]
          Length = 1583

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 1/48 (2%)

Query: 18  FQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            Q    K+K + KYLSV +RMEL+ +L+L+E Q+KTWFQNRR KWKKQ
Sbjct: 846 LQGLERKFK-IQKYLSVPERMELAGMLSLSETQVKTWFQNRRMKWKKQ 892



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+ +L+L+E Q+KTWFQNRR KWK
Sbjct: 865 MELAGMLSLSETQVKTWFQNRRMKWK 890


>gi|195144504|ref|XP_002013236.1| GL24020 [Drosophila persimilis]
 gi|194102179|gb|EDW24222.1| GL24020 [Drosophila persimilis]
          Length = 773

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 39/60 (65%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           V KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ        A ++ T     GGG
Sbjct: 436 VKKYLSSSERTEMAKLLIVTETQVKIWFQNRRTKWKKQDNVTNNEAAEHKSTNANKSGGG 495



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 447 EMAKLLIVTETQVKIWFQNRRTKWKKQD 474


>gi|269784915|ref|NP_001161609.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
 gi|268054215|gb|ACY92594.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
          Length = 339

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 9/84 (10%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ---LASKLKMVAHNRPTGFYFPGG 86
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ   + +    V  N P     PG 
Sbjct: 228 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDANAPTVQSN-PMPIGLPGY 286

Query: 87  GP-LIFGAQ-H---GSPTAPYFFS 105
           GP LI+G+Q H   G+   PY  +
Sbjct: 287 GPGLIYGSQVHYIPGASAIPYMLN 310



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 236 LNLALSLSLTETQVKIWFQNRRTKWK 261


>gi|195110741|ref|XP_001999938.1| GI24810 [Drosophila mojavensis]
 gi|193916532|gb|EDW15399.1| GI24810 [Drosophila mojavensis]
          Length = 787

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           + KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 440 IKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 477



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 451 EMAKLLNVTETQVKIWFQNRRTKWKKQD 478


>gi|195446054|ref|XP_002070606.1| GK12153 [Drosophila willistoni]
 gi|194166691|gb|EDW81592.1| GK12153 [Drosophila willistoni]
          Length = 788

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 447 VKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 484



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 458 EMAKLLNVTETQVKIWFQNRRTKWKKQD 485


>gi|312372641|gb|EFR20563.1| hypothetical protein AND_19897 [Anopheles darlingi]
          Length = 692

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 39/61 (63%), Gaps = 8/61 (13%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           V KYLS ++R E++KLLN+TE Q+K WFQNRRTKWKKQ +           TG    GG 
Sbjct: 408 VKKYLSSNERTEMAKLLNVTETQVKIWFQNRRTKWKKQDSGSG--------TGGTVEGGA 459

Query: 88  P 88
           P
Sbjct: 460 P 460



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 419 EMAKLLNVTETQVKIWFQNRRTKWKKQD 446


>gi|345495087|ref|XP_003427431.1| PREDICTED: hypothetical protein LOC100679869 [Nasonia vitripennis]
          Length = 649

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R +++KLLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 409 VKKYLSSSERADMAKLLNVTETQVKIWFQNRRTKWKKQ 446



 Score = 50.1 bits (118), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           +++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 420 DMAKLLNVTETQVKIWFQNRRTKWKKQD 447


>gi|390341618|ref|XP_785514.2| PREDICTED: uncharacterized protein LOC580358 [Strongylocentrotus
           purpuratus]
          Length = 433

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 319 KYLSVQDRMELAASLTLTDTQVKTWYQNRRTKWKRQTAVGLELLA 363



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 327 MELAASLTLTDTQVKTWYQNRRTKWK 352


>gi|312379368|gb|EFR25665.1| hypothetical protein AND_08801 [Anopheles darlingi]
          Length = 503

 Score = 65.1 bits (157), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           D Y+S+SKR ELS+ LNLT+ Q+KTWFQNRRTK+KKQ  S+ K++  N
Sbjct: 304 DIYVSISKRSELSRCLNLTDTQVKTWFQNRRTKFKKQSHSRTKVLERN 351



 Score = 45.1 bits (105), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ELS+ LNLT+ Q+KTWFQNRRTK+K
Sbjct: 314 ELSRCLNLTDTQVKTWFQNRRTKFK 338


>gi|195029899|ref|XP_001987809.1| GH19750 [Drosophila grimshawi]
 gi|193903809|gb|EDW02676.1| GH19750 [Drosophila grimshawi]
          Length = 385

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 15/106 (14%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +  +     G   P
Sbjct: 114 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYSQLGMGGLARP 173

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDS----------QSPRDAPG 120
           ++ G +      +P  P    + ML+ S           +P +APG
Sbjct: 174 MVVGDRLWLFSQTPAGPTPIQSIMLNGSGAAAPMRPYGAAPVNAPG 219



 Score = 45.1 bits (105), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 124 LAKQLQLTETQIKIWFQNRRTKWK 147


>gi|270010106|gb|EFA06554.1| hypothetical protein TcasGA2_TC009463 [Tribolium castaneum]
          Length = 328

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           +KYLSV+KR +LSK L LTE QIK WFQNRRTKWK++  + ++++A    T        P
Sbjct: 197 NKYLSVAKRCQLSKTLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYTSMGILTPRP 256

Query: 89  LIFG 92
           +  G
Sbjct: 257 IFLG 260



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
            +LSK L LTE QIK WFQNRRTKWK
Sbjct: 206 CQLSKTLKLTETQIKIWFQNRRTKWK 231


>gi|405962314|gb|EKC28005.1| BarH-like 1 homeobox protein, partial [Crassostrea gigas]
          Length = 149

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
          KYLSV  RMEL+  LNLT+ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 28 KYLSVQDRMELASKLNLTDTQVKTWYQNRRTKWKRQTAVGLELLA 72



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 36 MELASKLNLTDTQVKTWYQNRRTKWK 61


>gi|357607974|gb|EHJ65768.1| B-H1 [Danaus plexippus]
          Length = 276

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 92  KYLSVQDRMELAAKLGLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 137



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 100 MELAAKLGLTDTQVKTWYQNRRTKWK 125


>gi|195165529|ref|XP_002023591.1| GL19887 [Drosophila persimilis]
 gi|194105725|gb|EDW27768.1| GL19887 [Drosophila persimilis]
          Length = 633

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 395 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 439



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 403 MELANKLELSDCQVKTWYQNRRTKWK 428


>gi|198468111|ref|XP_002133933.1| GA28280 [Drosophila pseudoobscura pseudoobscura]
 gi|198146258|gb|EDY72560.1| GA28280 [Drosophila pseudoobscura pseudoobscura]
          Length = 636

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 398 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 442



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 406 MELANKLELSDCQVKTWYQNRRTKWK 431


>gi|195481044|ref|XP_002101491.1| GE17661 [Drosophila yakuba]
 gi|194189015|gb|EDX02599.1| GE17661 [Drosophila yakuba]
          Length = 656

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 405 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 449



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 413 MELANKLELSDCQVKTWYQNRRTKWK 438


>gi|195567415|ref|XP_002107256.1| GD15666 [Drosophila simulans]
 gi|194204661|gb|EDX18237.1| GD15666 [Drosophila simulans]
          Length = 638

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 396 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 440



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 404 MELANKLELSDCQVKTWYQNRRTKWK 429


>gi|195351714|ref|XP_002042374.1| GM13506 [Drosophila sechellia]
 gi|194124217|gb|EDW46260.1| GM13506 [Drosophila sechellia]
          Length = 640

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 398 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 442



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 406 MELANKLELSDCQVKTWYQNRRTKWK 431


>gi|195432046|ref|XP_002064037.1| GK19952 [Drosophila willistoni]
 gi|194160122|gb|EDW75023.1| GK19952 [Drosophila willistoni]
          Length = 696

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 406 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 450



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 414 MELANKLELSDCQVKTWYQNRRTKWK 439


>gi|157135404|ref|XP_001656642.1| hypothetical protein AaeL_AAEL003277 [Aedes aegypti]
 gi|108881271|gb|EAT45496.1| AAEL003277-PA [Aedes aegypti]
          Length = 490

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 33/38 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 264 VKKYLSSSERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 301



 Score = 49.7 bits (117), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 275 EMAKLLNVTETQVKIWFQNRRTKWKKQD 302


>gi|195486835|ref|XP_002091670.1| GE12123 [Drosophila yakuba]
 gi|194177771|gb|EDW91382.1| GE12123 [Drosophila yakuba]
          Length = 380

 Score = 64.3 bits (155), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 109 KYLSVAKRTSLAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 168

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +PT P    + ML+ S S
Sbjct: 169 MVVGDRLWLFSQTPTGPTPIQSIMLNGSGS 198



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 119 LAKQLQLTETQIKIWFQNRRTKWK 142


>gi|194891915|ref|XP_001977560.1| GG19114 [Drosophila erecta]
 gi|190649209|gb|EDV46487.1| GG19114 [Drosophila erecta]
          Length = 650

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 408 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 452



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 416 MELANKLELSDCQVKTWYQNRRTKWK 441


>gi|195382966|ref|XP_002050199.1| GJ22013 [Drosophila virilis]
 gi|194144996|gb|EDW61392.1| GJ22013 [Drosophila virilis]
          Length = 373

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +  +     G   P
Sbjct: 106 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYSQLGMGGMARP 165

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS---------PRDAPG 120
           ++ G +      +P  P    + ML+ S +         P  APG
Sbjct: 166 MVVGDRLWLFSQTPAGPTPIQSIMLNGSGAAPPMRPFGPPASAPG 210



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 116 LAKQLQLTETQIKIWFQNRRTKWK 139


>gi|291225099|ref|XP_002732539.1| PREDICTED: BarH-like homeobox-like [Saccoglossus kowalevskii]
          Length = 345

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           KYLSV  RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q    L+++A     G Y       
Sbjct: 229 KYLSVQDRMDLAASLNLTDTQVKTWYQNRRTKWKRQTQVGLELLAE---AGSY------- 278

Query: 90  IFGAQHGSPTAPYFF 104
              A H    +PYF+
Sbjct: 279 --NAMHRMFPSPYFY 291



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 237 MDLAASLNLTDTQVKTWYQNRRTKWK 262


>gi|195121174|ref|XP_002005096.1| GI20286 [Drosophila mojavensis]
 gi|193910164|gb|EDW09031.1| GI20286 [Drosophila mojavensis]
          Length = 392

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 14/105 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +  +     G   P
Sbjct: 116 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYSQLGMGGMARP 175

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS---------PRDAPG 120
           ++ G +      +P  P    + ML+ S +         P  APG
Sbjct: 176 MVVGDRLWLFSQTPAGPTPIQSIMLNGSGAAPPMRPYGPPASAPG 220



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 126 LAKQLQLTETQIKIWFQNRRTKWK 149


>gi|24656319|ref|NP_611491.1| lateral muscles scarcer [Drosophila melanogaster]
 gi|7302366|gb|AAF57455.1| lateral muscles scarcer [Drosophila melanogaster]
          Length = 411

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 142 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 201

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +PT P    + ML+ S S
Sbjct: 202 MVVGDRLWLFSQTPTGPTPIQSIMLNGSGS 231



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 152 LAKQLQLTETQIKIWFQNRRTKWK 175


>gi|313236935|emb|CBY12183.1| unnamed protein product [Oikopleura dioica]
          Length = 174

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 2/80 (2%)

Query: 27  YVD--KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           +VD  KYLS+S+RM+LS  LNL+E QIK WFQNRRTKWK+   S  ++  H        P
Sbjct: 95  HVDPKKYLSISRRMDLSDELNLSENQIKIWFQNRRTKWKRDYFSDYELWTHKMSLAISIP 154

Query: 85  GGGPLIFGAQHGSPTAPYFF 104
              P        S ++ YF+
Sbjct: 155 ILAPSHPFQGMNSKSSNYFY 174



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK--YVDKYLSVSKRMELS 41
           M+LS  LNL+E QIK WFQNRRTKWK  Y   Y   + +M L+
Sbjct: 108 MDLSDELNLSENQIKIWFQNRRTKWKRDYFSDYELWTHKMSLA 150


>gi|156988|gb|AAB59218.1| dual bar protein [Drosophila melanogaster]
          Length = 640

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 398 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 442



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 406 MELANKLELSDCQVKTWYQNRRTKWK 431


>gi|17737355|ref|NP_523386.1| BarH2, isoform A [Drosophila melanogaster]
 gi|33112232|sp|Q24256.3|BARH2_DROME RecName: Full=Homeobox protein B-H2; AltName: Full=Homeobox protein
           BarH2
 gi|4521961|gb|AAA28383.2| dual bar protein [Drosophila melanogaster]
 gi|7293346|gb|AAF48725.1| BarH2, isoform A [Drosophila melanogaster]
 gi|66571148|gb|AAY51539.1| IP01479p [Drosophila melanogaster]
 gi|220943370|gb|ACL84228.1| B-H2-PA [synthetic construct]
          Length = 645

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 403 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 447



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 411 MELANKLELSDCQVKTWYQNRRTKWK 436


>gi|115646382|gb|ABJ17038.1| IP14616p [Drosophila melanogaster]
          Length = 397

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 128 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 187

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +PT P    + ML+ S S
Sbjct: 188 MVVGDRLWLFSQTPTGPTPIQSIMLNGSGS 217



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 138 LAKQLQLTETQIKIWFQNRRTKWK 161


>gi|195132131|ref|XP_002010497.1| GI15962 [Drosophila mojavensis]
 gi|193908947|gb|EDW07814.1| GI15962 [Drosophila mojavensis]
          Length = 636

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 401 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 445



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 409 MELANKLELSDCQVKTWYQNRRTKWK 434


>gi|156976|gb|AAA28381.1| BarH1 [Drosophila ananassae]
          Length = 604

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R ELS  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 353 KYLSVQERQELSHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 397



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ELS  L+L++ Q+KTW+QNRRTKWK
Sbjct: 362 ELSHKLDLSDCQVKTWYQNRRTKWK 386


>gi|195393358|ref|XP_002055321.1| GJ18853 [Drosophila virilis]
 gi|194149831|gb|EDW65522.1| GJ18853 [Drosophila virilis]
          Length = 701

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 471 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 515



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 479 MELANKLELSDCQVKTWYQNRRTKWK 504


>gi|21064451|gb|AAM29455.1| RE33150p [Drosophila melanogaster]
          Length = 378

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 109 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 168

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +PT P    + ML+ S S
Sbjct: 169 MVVGDRLWLFSQTPTGPTPIQSIMLNGSGS 198



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 119 LAKQLQLTETQIKIWFQNRRTKWK 142


>gi|195049340|ref|XP_001992701.1| GH24902 [Drosophila grimshawi]
 gi|193893542|gb|EDV92408.1| GH24902 [Drosophila grimshawi]
          Length = 648

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 398 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 442



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 406 MELANKLELSDCQVKTWYQNRRTKWK 431


>gi|17737357|ref|NP_523387.1| BarH1, isoform A [Drosophila melanogaster]
 gi|33112231|sp|Q24255.2|BARH1_DROME RecName: Full=Homeobox protein B-H1; AltName: Full=Homeobox protein
           BarH1
 gi|7293347|gb|AAF48726.1| BarH1, isoform A [Drosophila melanogaster]
 gi|16182628|gb|AAL13538.1| GH07238p [Drosophila melanogaster]
 gi|220945398|gb|ACL85242.1| B-H1-PA [synthetic construct]
 gi|220952548|gb|ACL88817.1| B-H1-PA [synthetic construct]
          Length = 544

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 322 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 366



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 331 ELAHKLDLSDCQVKTWYQNRRTKWK 355


>gi|391337787|ref|XP_003743246.1| PREDICTED: homeobox protein B-H1-like [Metaseiulus occidentalis]
          Length = 309

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 128 KYLSVQDRMELAAKLKLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 173



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 136 MELAAKLKLTDTQVKTWYQNRRTKWK 161


>gi|195567411|ref|XP_002107254.1| GD15668 [Drosophila simulans]
 gi|194204659|gb|EDX18235.1| GD15668 [Drosophila simulans]
          Length = 547

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 325 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 369



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 334 ELAHKLDLSDCQVKTWYQNRRTKWK 358


>gi|327292010|ref|XP_003230713.1| PREDICTED: barH-like 1 homeobox protein-like, partial [Anolis
          carolinensis]
          Length = 186

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
          KYLSV  RMEL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 49 KYLSVQDRMELAAALSLSDTQVKTWYQNRRTKWKRQTAVGLELLAE 94



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 57 MELAAALSLSDTQVKTWYQNRRTKWK 82


>gi|195481060|ref|XP_002101498.1| GE17664 [Drosophila yakuba]
 gi|194189022|gb|EDX02606.1| GE17664 [Drosophila yakuba]
          Length = 574

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 349 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 393



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 358 ELAHKLDLSDCQVKTWYQNRRTKWK 382


>gi|195107704|ref|XP_001998448.1| GI23625 [Drosophila mojavensis]
 gi|193915042|gb|EDW13909.1| GI23625 [Drosophila mojavensis]
          Length = 80

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 32/36 (88%)

Query: 38 MELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
          MELSK L LTEVQIKTWFQNRRTKWKKQL S+LK+ 
Sbjct: 1  MELSKTLGLTEVQIKTWFQNRRTKWKKQLTSRLKIA 36



 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 32/44 (72%), Gaps = 1/44 (2%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKW-KYVDKYLSVSKRMELSKL 43
          MELSK L LTEVQIKTWFQNRRTKW K +   L +++R  L K 
Sbjct: 1  MELSKTLGLTEVQIKTWFQNRRTKWKKQLTSRLKIAQRHGLYKC 44


>gi|158286995|ref|XP_309065.4| AGAP005281-PA [Anopheles gambiae str. PEST]
 gi|157019801|gb|EAA04807.5| AGAP005281-PA [Anopheles gambiae str. PEST]
          Length = 602

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS ++R E++KLLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 403 VKKYLSSNERTEMAKLLNVTETQVKIWFQNRRTKWKKQ 440



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 414 EMAKLLNVTETQVKIWFQNRRTKWKKQD 441


>gi|194753798|ref|XP_001959192.1| GF12182 [Drosophila ananassae]
 gi|190620490|gb|EDV36014.1| GF12182 [Drosophila ananassae]
          Length = 380

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 116 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 175

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +PT P    + ML+ S S
Sbjct: 176 MVVGDRLWLFSQTPTGPTPIQSIMLNGSGS 205



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 126 LAKQLQLTETQIKIWFQNRRTKWK 149


>gi|405966847|gb|EKC32082.1| Homeobox protein HMX1 [Crassostrea gigas]
          Length = 201

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           +YLS ++R E++  LNLTE Q+K WFQNRR KWK QLAS   + A   P     P GG  
Sbjct: 127 RYLSSTERSEIASTLNLTETQVKVWFQNRRNKWKSQLASDPSISAERLPV---LPYGGRF 183

Query: 90  IFG-AQHGSPTAPYFF 104
            F     G+P  P  F
Sbjct: 184 SFPLGTFGNPLYPPLF 199



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E++  LNLTE Q+K WFQNRR KWK
Sbjct: 136 EIASTLNLTETQVKVWFQNRRNKWK 160


>gi|195585125|ref|XP_002082345.1| GD11523 [Drosophila simulans]
 gi|194194354|gb|EDX07930.1| GD11523 [Drosophila simulans]
          Length = 378

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 109 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDMETLASHYYAQLGIGGLARP 168

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDS 112
           ++ G +      +PT P    + ML+ S
Sbjct: 169 MVVGDRLWLFSQTPTGPTPIQSIMLNGS 196



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 119 LAKQLQLTETQIKIWFQNRRTKWK 142


>gi|391347917|ref|XP_003748200.1| PREDICTED: uncharacterized protein LOC100906611 [Metaseiulus
           occidentalis]
          Length = 281

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 39/51 (76%), Gaps = 6/51 (11%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ------LASKLKM 72
           + KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKKQ       A++LKM
Sbjct: 63  LKKYLSSSERAEMAKLLNVTETQVKIWFQNRRTKWKKQDGISNAEAAELKM 113



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK  D
Sbjct: 74  EMAKLLNVTETQVKIWFQNRRTKWKKQD 101


>gi|195336136|ref|XP_002034703.1| GM22025 [Drosophila sechellia]
 gi|194126673|gb|EDW48716.1| GM22025 [Drosophila sechellia]
          Length = 378

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 5/88 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 109 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 168

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDS 112
           ++ G +      +PT P    + ML+ S
Sbjct: 169 MVVGDRLWLFSQTPTGPTPIQSIMLNGS 196



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 119 LAKQLQLTETQIKIWFQNRRTKWK 142


>gi|195132137|ref|XP_002010500.1| GI15964 [Drosophila mojavensis]
 gi|193908950|gb|EDW07817.1| GI15964 [Drosophila mojavensis]
          Length = 524

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 304 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 348



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 313 ELAHKLDLSDCQVKTWYQNRRTKWK 337


>gi|195165531|ref|XP_002023592.1| GL19888 [Drosophila persimilis]
 gi|194105726|gb|EDW27769.1| GL19888 [Drosophila persimilis]
          Length = 550

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 319 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 363



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 328 ELAHKLDLSDCQVKTWYQNRRTKWK 352


>gi|195150297|ref|XP_002016091.1| GL11409 [Drosophila persimilis]
 gi|198457088|ref|XP_001360547.2| GA12277 [Drosophila pseudoobscura pseudoobscura]
 gi|194109938|gb|EDW31981.1| GL11409 [Drosophila persimilis]
 gi|198135854|gb|EAL25122.2| GA12277 [Drosophila pseudoobscura pseudoobscura]
          Length = 383

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPG-GGP 88
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +        G   P
Sbjct: 114 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASHYYAQLGIGGLARP 173

Query: 89  LIFGAQ----HGSPTAPYFFSASMLDDSQS 114
           ++ G +      +P  P    + ML+ S S
Sbjct: 174 MVVGDRLWLFSQTPAGPTPIQSIMLNGSGS 203



 Score = 44.7 bits (104), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 124 LAKQLQLTETQIKIWFQNRRTKWK 147


>gi|195351722|ref|XP_002042378.1| GM13509 [Drosophila sechellia]
 gi|194124221|gb|EDW46264.1| GM13509 [Drosophila sechellia]
          Length = 461

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 239 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 283



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 248 ELAHKLDLSDCQVKTWYQNRRTKWK 272


>gi|198468115|ref|XP_002133935.1| GA28287 [Drosophila pseudoobscura pseudoobscura]
 gi|198146260|gb|EDY72562.1| GA28287 [Drosophila pseudoobscura pseudoobscura]
          Length = 626

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 395 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 439



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 404 ELAHKLDLSDCQVKTWYQNRRTKWK 428


>gi|195393352|ref|XP_002055318.1| GJ18855 [Drosophila virilis]
 gi|194149828|gb|EDW65519.1| GJ18855 [Drosophila virilis]
          Length = 547

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 304 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 348



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 313 ELAHKLDLSDCQVKTWYQNRRTKWK 337


>gi|242017971|ref|XP_002429457.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
 gi|212514389|gb|EEB16719.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
          Length = 360

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 7/77 (9%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHN-----RPTGFY 82
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+   +AH      R    Y
Sbjct: 245 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANMAHAAQRLVRVPILY 304

Query: 83  FPGGGPLIFGAQHGSPT 99
               G LI  + H +PT
Sbjct: 305 HEAAGGLIHHSHHIAPT 321



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 255 LAASLHLTETQVKIWFQNRRNKWK 278


>gi|194767113|ref|XP_001965663.1| B-H1 [Drosophila ananassae]
 gi|190619654|gb|EDV35178.1| B-H1 [Drosophila ananassae]
          Length = 943

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 737 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 781



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNR 58
           KYLSV  RMEL+  L L++ Q+KTW+QNR
Sbjct: 396 KYLSVQDRMELANKLELSDCQVKTWYQNR 424



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 746 ELAHKLDLSDCQVKTWYQNRRTKWK 770


>gi|358253465|dbj|GAA53136.1| BarH-like 2 homeobox protein [Clonorchis sinensis]
          Length = 368

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
          KYLSV  RMEL++ L LT+ Q+KTW+QNRRTKWK+Q A   +++A
Sbjct: 6  KYLSVQDRMELAERLQLTDTQVKTWYQNRRTKWKRQTAVGFELLA 50



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL++ L LT+ Q+KTW+QNRRTKWK
Sbjct: 14 MELAERLQLTDTQVKTWYQNRRTKWK 39


>gi|198436539|ref|XP_002124516.1| PREDICTED: transcription factor protein [Ciona intestinalis]
          Length = 383

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%), Gaps = 3/53 (5%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY 82
           KYLSV  R+EL++ L+L++ Q+KTW+QNRRTKWK+Q A  L+++A    TG Y
Sbjct: 254 KYLSVQDRIELAQRLDLSDTQVKTWYQNRRTKWKRQTAVGLELLAE---TGNY 303



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL++ L+L++ Q+KTW+QNRRTKWK
Sbjct: 262 IELAQRLDLSDTQVKTWYQNRRTKWK 287


>gi|442616703|ref|NP_001259641.1| BarH2, isoform B [Drosophila melanogaster]
 gi|440216872|gb|AGB95483.1| BarH2, isoform B [Drosophila melanogaster]
          Length = 303

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A 
Sbjct: 61  KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLAE 106



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 69 MELANKLELSDCQVKTWYQNRRTKWK 94


>gi|170035788|ref|XP_001845749.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167878186|gb|EDS41569.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 438

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV+KR  L+K L+LTE QIK WFQNRRTKWK++  S ++ +A
Sbjct: 175 KYLSVAKRTALAKSLHLTETQIKIWFQNRRTKWKRKYTSDVEQLA 219



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L+LTE QIK WFQNRRTKWK
Sbjct: 185 LAKSLHLTETQIKIWFQNRRTKWK 208


>gi|328778787|ref|XP_001121415.2| PREDICTED: hypothetical protein LOC725590 [Apis mellifera]
          Length = 536

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 202 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 248



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 210 MELAAKLQLTDTQVKTWYQNRRTKWK 235


>gi|241727240|ref|XP_002413770.1| nk homeobox protein, putative [Ixodes scapularis]
 gi|215507586|gb|EEC17078.1| nk homeobox protein, putative [Ixodes scapularis]
          Length = 32

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/32 (93%), Positives = 30/32 (93%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
          VDKYLSVSKRMELS  LNLTEVQIKTWFQNRR
Sbjct: 1  VDKYLSVSKRMELSATLNLTEVQIKTWFQNRR 32



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 20/22 (90%)

Query: 1  MELSKLLNLTEVQIKTWFQNRR 22
          MELS  LNLTEVQIKTWFQNRR
Sbjct: 11 MELSATLNLTEVQIKTWFQNRR 32


>gi|194881609|ref|XP_001974923.1| GG22042 [Drosophila erecta]
 gi|190658110|gb|EDV55323.1| GG22042 [Drosophila erecta]
          Length = 381

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 36/47 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A +
Sbjct: 109 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLASH 155



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 119 LAKQLQLTETQIKIWFQNRRTKWK 142


>gi|410918371|ref|XP_003972659.1| PREDICTED: homeobox protein HMX3-like [Takifugu rubripes]
          Length = 291

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 8/81 (9%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG------- 80
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  A  + +        
Sbjct: 185 VKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLAADLEASAVPQSSQRIVRVPI 244

Query: 81  FYFPGGGPLIFGAQHGSPTAP 101
            Y  GG  L F +  G P +P
Sbjct: 245 LYHDGGASLGF-SLSGHPVSP 264



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 197 LAATLHLTETQVKIWFQNRRNKWK 220


>gi|383848550|ref|XP_003699912.1| PREDICTED: uncharacterized protein LOC100883050 [Megachile
           rotundata]
          Length = 523

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L+LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 195 KYLSVQDRMELAAKLHLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 241



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L+LT+ Q+KTW+QNRRTKWK
Sbjct: 203 MELAAKLHLTDTQVKTWYQNRRTKWK 228


>gi|195049345|ref|XP_001992702.1| GH24903 [Drosophila grimshawi]
 gi|193893543|gb|EDV92409.1| GH24903 [Drosophila grimshawi]
          Length = 571

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 333 KYLSVQERQELAHKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 377



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 342 ELAHKLELSDCQVKTWYQNRRTKWK 366


>gi|70568957|dbj|BAE06324.1| transcription factor protein [Ciona intestinalis]
          Length = 149

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 41/53 (77%), Gaps = 3/53 (5%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY 82
          KYLSV  R+EL++ L+L++ Q+KTW+QNRRTKWK+Q A  L+++A    TG Y
Sbjct: 17 KYLSVQDRIELAQRLDLSDTQVKTWYQNRRTKWKRQTAVGLELLAE---TGNY 66



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 24/26 (92%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +EL++ L+L++ Q+KTW+QNRRTKWK
Sbjct: 25 IELAQRLDLSDTQVKTWYQNRRTKWK 50


>gi|307210509|gb|EFN87012.1| Homeobox protein B-H1 [Harpegnathos saltator]
          Length = 513

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 195 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 241



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 203 MELAAKLQLTDTQVKTWYQNRRTKWK 228


>gi|195432048|ref|XP_002064038.1| GK19953 [Drosophila willistoni]
 gi|194160123|gb|EDW75024.1| GK19953 [Drosophila willistoni]
          Length = 650

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 420 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 464



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 429 ELAHKLDLSDCQVKTWYQNRRTKWK 453


>gi|307179993|gb|EFN68083.1| Homeobox protein B-H1 [Camponotus floridanus]
          Length = 523

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 204 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 250



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 212 MELAAKLQLTDTQVKTWYQNRRTKWK 237


>gi|157128276|ref|XP_001661378.1| hypothetical protein AaeL_AAEL002355 [Aedes aegypti]
 gi|108882265|gb|EAT46490.1| AAEL002355-PA [Aedes aegypti]
          Length = 300

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 36/45 (80%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
          KYLSV+KR  L+K L+LTE QIK WFQNRRTKWK++  S ++ +A
Sbjct: 45 KYLSVAKRTALAKSLHLTETQIKIWFQNRRTKWKRKYTSDVEQLA 89



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 21/24 (87%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+K L+LTE QIK WFQNRRTKWK
Sbjct: 55 LAKSLHLTETQIKIWFQNRRTKWK 78


>gi|380029830|ref|XP_003698568.1| PREDICTED: uncharacterized protein LOC100867221 [Apis florea]
          Length = 541

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 205 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 251



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 213 MELAAKLQLTDTQVKTWYQNRRTKWK 238


>gi|332030454|gb|EGI70142.1| Homeobox protein B-H1 [Acromyrmex echinatior]
          Length = 510

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 195 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 241



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 203 MELAAKLQLTDTQVKTWYQNRRTKWK 228


>gi|350415989|ref|XP_003490812.1| PREDICTED: hypothetical protein LOC100740223 [Bombus impatiens]
          Length = 526

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 196 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 242



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 204 MELAAKLQLTDTQVKTWYQNRRTKWK 229


>gi|340711425|ref|XP_003394276.1| PREDICTED: hypothetical protein LOC100651071 [Bombus terrestris]
          Length = 526

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A N
Sbjct: 196 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAEN 242



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 204 MELAAKLQLTDTQVKTWYQNRRTKWK 229


>gi|195391576|ref|XP_002054436.1| GJ24455 [Drosophila virilis]
 gi|194152522|gb|EDW67956.1| GJ24455 [Drosophila virilis]
          Length = 758

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 32/38 (84%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 425 VKKYLSSSERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 462



 Score = 47.4 bits (111), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 436 EMAKLLMVTETQVKIWFQNRRTKWKKQD 463


>gi|195430460|ref|XP_002063272.1| GK21480 [Drosophila willistoni]
 gi|194159357|gb|EDW74258.1| GK21480 [Drosophila willistoni]
          Length = 384

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 35/45 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV+KR  L+K L LTE QIK WFQNRRTKWK++  S ++ +A
Sbjct: 140 KYLSVAKRTALAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETLA 184



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L LTE QIK WFQNRRTKWK
Sbjct: 150 LAKQLQLTETQIKIWFQNRRTKWK 173


>gi|260828235|ref|XP_002609069.1| nk homeobox 7 [Branchiostoma floridae]
 gi|229294423|gb|EEN65079.1| nk homeobox 7 [Branchiostoma floridae]
          Length = 327

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R +L+ LLN+T+ Q+K WFQNRRTKWKKQ
Sbjct: 169 VKKYLSASERADLAALLNVTDTQVKIWFQNRRTKWKKQ 206



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
            +L+ LLN+T+ Q+K WFQNRRTKWK  D
Sbjct: 179 ADLAALLNVTDTQVKIWFQNRRTKWKKQD 207


>gi|118786299|ref|XP_555988.2| AGAP005346-PA [Anopheles gambiae str. PEST]
 gi|116126253|gb|EAL39802.2| AGAP005346-PA [Anopheles gambiae str. PEST]
          Length = 461

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV+KR  L+K L+LTE QIK WFQNRRTKWK++  + ++ +A
Sbjct: 172 KYLSVAKRTALAKQLHLTETQIKIWFQNRRTKWKRKYTADVESLA 216



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L+LTE QIK WFQNRRTKWK
Sbjct: 182 LAKQLHLTETQIKIWFQNRRTKWK 205


>gi|195478007|ref|XP_002100374.1| GE17019 [Drosophila yakuba]
 gi|194187898|gb|EDX01482.1| GE17019 [Drosophila yakuba]
          Length = 276

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYF---P 84
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H       F    
Sbjct: 162 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRHQATMEKDFVVQD 221

Query: 85  GGGPLIFGA 93
           GGG    G 
Sbjct: 222 GGGASGLGC 230



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 173 DVAETLNLSETQVKTWYQNRRTKWK 197


>gi|259013358|ref|NP_001158386.1| BarH-like homeobox [Saccoglossus kowalevskii]
 gi|32307805|gb|AAP79299.1| barH [Saccoglossus kowalevskii]
          Length = 332

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 35/42 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           KYLSV +RM+L+  LNLT+ Q+KTW+QNRRTKWK+Q+   L+
Sbjct: 216 KYLSVQERMDLASSLNLTDTQVKTWYQNRRTKWKRQMQVGLE 257



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  LNLT+ Q+KTW+QNRRTKWK
Sbjct: 224 MDLASSLNLTDTQVKTWYQNRRTKWK 249


>gi|358340815|dbj|GAA48629.1| homeobox protein ceh-31 [Clonorchis sinensis]
          Length = 393

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYL+V  RMEL+  L L+++Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 166 KYLAVQDRMELAARLGLSDMQVKTWYQNRRTKWKRQTAVGLELLA 210



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L+++Q+KTW+QNRRTKWK
Sbjct: 174 MELAARLGLSDMQVKTWYQNRRTKWK 199


>gi|198452832|ref|XP_001358961.2| GA21136 [Drosophila pseudoobscura pseudoobscura]
 gi|198132097|gb|EAL28104.2| GA21136 [Drosophila pseudoobscura pseudoobscura]
          Length = 761

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 38/60 (63%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           V KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ        A ++ T     G G
Sbjct: 425 VKKYLSSSERTEMAKLLIVTETQVKIWFQNRRTKWKKQDNVTNNEAAEHKSTNANKSGVG 484



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 436 EMAKLLIVTETQVKIWFQNRRTKWKKQD 463


>gi|345498467|ref|XP_001601482.2| PREDICTED: hypothetical protein LOC100117163 [Nasonia vitripennis]
          Length = 531

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 36/44 (81%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R +L++ L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 380 IKRYLSSSERAQLAQSLRLTETQVKIWFQNRRNKWKRQLAAELE 423



 Score = 41.6 bits (96), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 20/25 (80%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +L++ L LTE Q+K WFQNRR KWK
Sbjct: 391 QLAQSLRLTETQVKIWFQNRRNKWK 415


>gi|410932755|ref|XP_003979758.1| PREDICTED: homeobox protein HMX1-like [Takifugu rubripes]
          Length = 196

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 8/81 (9%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG------- 80
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  A  + +        
Sbjct: 90  VKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLAADLEASAVPQSSQRIVRVPI 149

Query: 81  FYFPGGGPLIFGAQHGSPTAP 101
            Y  GG  L F    G P +P
Sbjct: 150 LYHDGGASLGFSLS-GHPVSP 169



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 102 LAATLHLTETQVKIWFQNRRNKWK 125


>gi|195570923|ref|XP_002103453.1| GD20427 [Drosophila simulans]
 gi|194199380|gb|EDX12956.1| GD20427 [Drosophila simulans]
          Length = 719

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 407 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 451



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 425 EMAKLLMVTETQVKIWFQNRRTKWKKQD 452


>gi|194900753|ref|XP_001979920.1| GG21357 [Drosophila erecta]
 gi|190651623|gb|EDV48878.1| GG21357 [Drosophila erecta]
          Length = 721

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 408 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 452



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 426 EMAKLLMVTETQVKIWFQNRRTKWKKQD 453


>gi|259053111|emb|CAX11342.1| Hox3 protein [Parasteatoda tepidariorum]
          Length = 606

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 9/79 (11%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK---LKMVAHNRP-TGFY 82
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK+  SK    + V    P +G  
Sbjct: 253 HFNRYLCRPRRIEMASLLNLTERQIKIWFQNRRMKYKKEQKSKGIFCQAVDKETPCSGGS 312

Query: 83  FPGGGPLIFGAQHGSPTAP 101
            PG  P+       SPT+P
Sbjct: 313 LPGSSPITH-----SPTSP 326



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 264 IEMASLLNLTERQIKIWFQNRRMKYK 289


>gi|156981|gb|AAA28382.1| BarH1 [Drosophila melanogaster]
          Length = 543

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 322 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 366



 Score = 42.7 bits (99), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 331 ELAHKLDLSDCQVKTWYQNRRTKWK 355


>gi|195501626|ref|XP_002097873.1| GE26456 [Drosophila yakuba]
 gi|194183974|gb|EDW97585.1| GE26456 [Drosophila yakuba]
          Length = 721

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 407 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 451



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 425 EMAKLLMVTETQVKIWFQNRRTKWKKQD 452


>gi|260826726|ref|XP_002608316.1| BarH-like homeobox protein [Branchiostoma floridae]
 gi|229293667|gb|EEN64326.1| BarH-like homeobox protein [Branchiostoma floridae]
          Length = 337

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 6/69 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL------ASKLKMVAHNRPTGFYF 83
           KYLS S R EL+  L+LT+ Q+KTWFQNRR KWK+Q+      A +  M   + P   +F
Sbjct: 165 KYLSASDREELAHALDLTDAQVKTWFQNRRMKWKRQVQDAESEARRFGMFGPHHPHLAFF 224

Query: 84  PGGGPLIFG 92
           P  G  + G
Sbjct: 225 PSLGVTLAG 233



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+LT+ Q+KTWFQNRR KWK
Sbjct: 174 ELAHALDLTDAQVKTWFQNRRMKWK 198


>gi|328720395|ref|XP_003247017.1| PREDICTED: homeobox protein slou-like [Acyrthosiphon pisum]
          Length = 463

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/80 (45%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ---LASKLKMVAHNRPTGFYFPGG 86
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ   L      V    P G    GG
Sbjct: 358 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVNSPTVPPPGPAGSSATGG 417

Query: 87  ----GPLIFGAQHGSPTAPY 102
                PL + A H   T  Y
Sbjct: 418 PPFFHPLAYSAAHHYQTQSY 437



 Score = 43.9 bits (102), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 366 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 400


>gi|194891922|ref|XP_001977561.1| GG19116 [Drosophila erecta]
 gi|190649210|gb|EDV46488.1| GG19116 [Drosophila erecta]
          Length = 551

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 37/45 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKWK+Q A  L+++A
Sbjct: 327 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 371



 Score = 42.7 bits (99), Expect = 0.030,   Method: Composition-based stats.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+  L+L++ Q+KTW+QNRRTKWK
Sbjct: 336 ELAHKLDLSDCQVKTWYQNRRTKWK 360


>gi|195329018|ref|XP_002031208.1| GM25858 [Drosophila sechellia]
 gi|194120151|gb|EDW42194.1| GM25858 [Drosophila sechellia]
          Length = 729

 Score = 61.2 bits (147), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 414 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 458



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 432 EMAKLLMVTETQVKIWFQNRRTKWKKQD 459


>gi|391336860|ref|XP_003742796.1| PREDICTED: homeobox protein slou-like [Metaseiulus occidentalis]
          Length = 379

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 23/101 (22%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ-----------------------L 66
           +YLSV +R+ L+  L LTE Q+K WFQNRRTKWKKQ                       L
Sbjct: 258 RYLSVCERLNLALSLRLTETQVKIWFQNRRTKWKKQNPGMDANSPTTPASSSAPLTSSPL 317

Query: 67  ASKLKMVAHNRPTGFYFPGGGPLIFGAQHGSPTAPYFFSAS 107
            + L   +        +    P + G   GSPT PYF +AS
Sbjct: 318 TAPLTANSQLAAAALLYGSQLPYLSGGLSGSPTPPYFGAAS 358


>gi|78214295|gb|ABB36462.1| AT09939p [Drosophila melanogaster]
          Length = 720

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 406 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 450



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 424 EMAKLLMVTETQVKIWFQNRRTKWKKQD 451


>gi|307201138|gb|EFN81049.1| BarH-like 2 homeobox protein [Harpegnathos saltator]
          Length = 199

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 8/78 (10%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H            
Sbjct: 82  CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRHQATVEKEL---- 137

Query: 88  PLIFGAQHGSPTA---PY 102
            L+ G  HGS  A   PY
Sbjct: 138 -LVHGLHHGSIDAYCSPY 154



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 93  DVADALSLSETQVKTWYQNRRTKWK 117


>gi|24646818|ref|NP_650357.2| NK7.1, isoform A [Drosophila melanogaster]
 gi|24646820|ref|NP_731904.1| NK7.1, isoform B [Drosophila melanogaster]
 gi|386765773|ref|NP_001247103.1| NK7.1, isoform C [Drosophila melanogaster]
 gi|23171254|gb|AAF55051.2| NK7.1, isoform A [Drosophila melanogaster]
 gi|23171255|gb|AAN13607.1| NK7.1, isoform B [Drosophila melanogaster]
 gi|383292707|gb|AFH06421.1| NK7.1, isoform C [Drosophila melanogaster]
          Length = 721

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 407 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 451



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 425 EMAKLLMVTETQVKIWFQNRRTKWKKQD 452


>gi|343168817|gb|AEL96785.1| RT11968p1 [Drosophila melanogaster]
          Length = 721

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 407 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 451



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 425 EMAKLLMVTETQVKIWFQNRRTKWKKQD 452


>gi|390349352|ref|XP_786006.2| PREDICTED: uncharacterized protein LOC580883 [Strongylocentrotus
           purpuratus]
          Length = 432

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           V KYLS S+R EL+ LLN+T+ Q+K WFQNRRTKWKK
Sbjct: 236 VKKYLSASERAELASLLNVTDTQVKIWFQNRRTKWKK 272



 Score = 47.0 bits (110), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+ LLN+T+ Q+K WFQNRRTKWK
Sbjct: 247 ELASLLNVTDTQVKIWFQNRRTKWK 271


>gi|198470721|ref|XP_002133557.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
 gi|198145589|gb|EDY72185.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
          Length = 283

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 170 KYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 215



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 179 DVAETLNLSETQVKTWYQNRRTKWK 203


>gi|208401110|gb|ACI26671.1| NK-like homeobox protein 7 [Capitella teleta]
          Length = 267

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 7/86 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           KYLS S+R E++ LLN+TE Q+K WFQNRRTKWKKQ     + +++     +    GG  
Sbjct: 44  KYLSSSERAEMATLLNVTETQVKIWFQNRRTKWKKQ-----ENISNTEAADYKI--GGEK 96

Query: 90  IFGAQHGSPTAPYFFSASMLDDSQSP 115
              +Q   P A   +S + +     P
Sbjct: 97  HVDSQRRGPRAQPSYSPTCVKSEMKP 122



 Score = 46.6 bits (109), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          E++ LLN+TE Q+K WFQNRRTKWK
Sbjct: 53 EMATLLNVTETQVKIWFQNRRTKWK 77


>gi|195446794|ref|XP_002070926.1| GK25513 [Drosophila willistoni]
 gi|194167011|gb|EDW81912.1| GK25513 [Drosophila willistoni]
          Length = 254

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 139 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 186



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 150 DVAETLNLSETQVKTWYQNRRTKWK 174


>gi|195174927|ref|XP_002028217.1| GL13135 [Drosophila persimilis]
 gi|194116716|gb|EDW38759.1| GL13135 [Drosophila persimilis]
          Length = 282

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 169 KYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 214



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 178 DVAETLNLSETQVKTWYQNRRTKWK 202


>gi|195048680|ref|XP_001992575.1| GH24130 [Drosophila grimshawi]
 gi|193893416|gb|EDV92282.1| GH24130 [Drosophila grimshawi]
          Length = 281

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 167 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 214



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 178 DVAETLNLSETQVKTWYQNRRTKWK 202


>gi|2996042|gb|AAC08423.1| homeobox protein NK7.1 [Drosophila melanogaster]
          Length = 641

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 38/53 (71%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++  F+N+        KYLS S+R E++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 407 ELEKMFENK--------KYLSASERTEMAKLLMVTETQVKIWFQNRRTKWKKQ 451



 Score = 47.0 bits (110), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 425 EMAKLLMVTETQVKIWFQNRRTKWKKQD 452


>gi|47220252|emb|CAG03286.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 255

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  A
Sbjct: 208 VKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLAADLEASA 254



 Score = 40.8 bits (94), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 220 LAATLHLTETQVKIWFQNRRNKWK 243


>gi|405962316|gb|EKC28007.1| von Willebrand factor A domain-containing protein 5A [Crassostrea
           gigas]
          Length = 860

 Score = 60.8 bits (146), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RMEL+  L L++ Q+KTW+QNRRTKWK+Q +  L+++A 
Sbjct: 646 KYLSVQDRMELAAKLGLSDTQVKTWYQNRRTKWKRQTSVSLELLAE 691



 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  R+EL+  L L++ Q+KTW+QNRRTKWK+Q +  L+++A 
Sbjct: 767 KYLSVQDRLELATKLGLSDTQVKTWYQNRRTKWKRQTSVSLELLAE 812



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 654 MELAAKLGLSDTQVKTWYQNRRTKWK 679



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L++ Q+KTW+QNRRTKWK
Sbjct: 775 LELATKLGLSDTQVKTWYQNRRTKWK 800


>gi|195352674|ref|XP_002042836.1| GM11573 [Drosophila sechellia]
 gi|194126883|gb|EDW48926.1| GM11573 [Drosophila sechellia]
          Length = 272

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 158 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 205



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 169 DVAETLNLSETQVKTWYQNRRTKWK 193


>gi|194763969|ref|XP_001964104.1| GF21379 [Drosophila ananassae]
 gi|190619029|gb|EDV34553.1| GF21379 [Drosophila ananassae]
          Length = 313

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 198 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 245



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 209 DVAETLNLSETQVKTWYQNRRTKWK 233


>gi|194895837|ref|XP_001978355.1| GG17730 [Drosophila erecta]
 gi|190650004|gb|EDV47282.1| GG17730 [Drosophila erecta]
          Length = 272

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 159 CQKYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 206



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 170 DVAETLNLSETQVKTWYQNRRTKWK 194


>gi|432903181|ref|XP_004077123.1| PREDICTED: homeobox protein HMX2 [Oryzias latipes]
          Length = 275

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 174 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 230

Query: 88  PLIF 91
           PL+F
Sbjct: 231 PLVF 234



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 184 LASSLQLTETQVKTWFQNRRNKWK 207


>gi|161077784|ref|NP_572815.3| CG11085 [Drosophila melanogaster]
 gi|66571260|gb|AAY51595.1| IP01054p [Drosophila melanogaster]
 gi|158031802|gb|AAF48182.4| CG11085 [Drosophila melanogaster]
 gi|220953298|gb|ACL89192.1| CG11085-PA [synthetic construct]
          Length = 295

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 37/46 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 183 KYLSVADRSDVAETLNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 228



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 192 DVAETLNLSETQVKTWYQNRRTKWK 216


>gi|321475823|gb|EFX86785.1| hypothetical protein DAPPUDRAFT_29136 [Daphnia pulex]
          Length = 66

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/32 (90%), Positives = 31/32 (96%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
          VDKYLSV+KRMELSK L+LTEVQIKTWFQNRR
Sbjct: 35 VDKYLSVNKRMELSKSLSLTEVQIKTWFQNRR 66



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 1  MELSKLLNLTEVQIKTWFQNRR 22
          MELSK L+LTEVQIKTWFQNRR
Sbjct: 45 MELSKSLSLTEVQIKTWFQNRR 66


>gi|123239|sp|P22544.1|BARH1_DROAN RecName: Full=Homeobox protein B-H1; AltName: Full=Homeobox BarH1
           protein
 gi|7147|emb|CAA40011.1| Om(1D) [Drosophila ananassae]
          Length = 606

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 36/45 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV +R EL+  L+L++ Q+KTW+QNRRTKW +Q A  L+++A
Sbjct: 354 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWMRQTAVGLELLA 398



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 21/24 (87%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKW 25
           EL+  L+L++ Q+KTW+QNRRTKW
Sbjct: 363 ELAHKLDLSDCQVKTWYQNRRTKW 386


>gi|313232432|emb|CBY24100.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           Q++TWF+ +R        YLS S+R  L+  LNLTE Q+K WFQNRR KWK+Q
Sbjct: 289 QLETWFERKR--------YLSSSERTNLATQLNLTETQVKIWFQNRRNKWKRQ 333



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
           L+  LNLTE Q+K WFQNRR KWK   +  +   R++ + LLN
Sbjct: 308 LATQLNLTETQVKIWFQNRRNKWKRQTQTDNGLTRLQPTSLLN 350


>gi|157133818|ref|XP_001656292.1| hypothetical protein AaeL_AAEL012881 [Aedes aegypti]
 gi|108870695|gb|EAT34920.1| AAEL012881-PA [Aedes aegypti]
          Length = 223

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 119 CQKYLSVADRSDVADALNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 166



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  LNL+E Q+KTW+QNRRTKWK
Sbjct: 130 DVADALNLSETQVKTWYQNRRTKWK 154


>gi|91077574|ref|XP_972824.1| PREDICTED: similar to CG11085 CG11085-PA [Tribolium castaneum]
          Length = 171

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 63  CQKYLSVADRSDVADALNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 110



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          +++  LNL+E Q+KTW+QNRRTKWK
Sbjct: 74 DVADALNLSETQVKTWYQNRRTKWK 98


>gi|410901026|ref|XP_003963997.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
 gi|410930960|ref|XP_003978865.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
          Length = 273

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|56791830|gb|AAW30416.1| NK5 [Oikopleura dioica]
          Length = 402

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           Q++TWF+ +R        YLS S+R  L+  LNLTE Q+K WFQNRR KWK+Q
Sbjct: 289 QLETWFERKR--------YLSSSERTNLATQLNLTETQVKIWFQNRRNKWKRQ 333



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
           L+  LNLTE Q+K WFQNRR KWK   +  +   R++ + L+N
Sbjct: 308 LATQLNLTETQVKIWFQNRRNKWKRQTQTDNGLTRLQPTSLIN 350


>gi|270001577|gb|EEZ98024.1| hypothetical protein TcasGA2_TC000424 [Tribolium castaneum]
          Length = 190

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  LNL+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 82  CQKYLSVADRSDVADALNLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 129



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  LNL+E Q+KTW+QNRRTKWK
Sbjct: 93  DVADALNLSETQVKTWYQNRRTKWK 117


>gi|195055953|ref|XP_001994877.1| GH13706 [Drosophila grimshawi]
 gi|193892640|gb|EDV91506.1| GH13706 [Drosophila grimshawi]
          Length = 752

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           V KYLS S+R +++KLL +TE Q+K WFQNRRTKWKKQ
Sbjct: 425 VKKYLSSSERTDMAKLLMVTETQVKIWFQNRRTKWKKQ 462



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 23/28 (82%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           +++KLL +TE Q+K WFQNRRTKWK  D
Sbjct: 436 DMAKLLMVTETQVKIWFQNRRTKWKKQD 463


>gi|15824398|gb|AAL09323.1|AF303216_1 homeobox Hx [Branchiostoma floridae]
          Length = 309

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
             KYL+ ++R EL++ + LT+ Q+KTWFQNRR KWK+Q            P G+   G G
Sbjct: 181 TQKYLAAAERQELAQRIGLTDTQVKTWFQNRRMKWKRQQQEAQTQALSMSPHGYA--GTG 238

Query: 88  PLIFGAQHGSPTAPY 102
           PL+       P APY
Sbjct: 239 PLLT-----DPRAPY 248



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL++ + LT+ Q+KTWFQNRR KWK
Sbjct: 192 ELAQRIGLTDTQVKTWFQNRRMKWK 216


>gi|348501546|ref|XP_003438330.1| PREDICTED: homeobox protein HMX2-like [Oreochromis niloticus]
          Length = 273

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|313221528|emb|CBY32275.1| unnamed protein product [Oikopleura dioica]
          Length = 402

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 8/53 (15%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           Q++TWF+ +R        YLS S+R  L+  LNLTE Q+K WFQNRR KWK+Q
Sbjct: 289 QLETWFERKR--------YLSSSERTNLATQLNLTETQVKIWFQNRRNKWKRQ 333



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 28/43 (65%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
           L+  LNLTE Q+K WFQNRR KWK   +  +   R++ + LLN
Sbjct: 308 LATQLNLTETQVKIWFQNRRNKWKRQTQTDNGLTRLQPTSLLN 350


>gi|391337785|ref|XP_003743245.1| PREDICTED: uncharacterized protein LOC100901974 [Metaseiulus
           occidentalis]
          Length = 332

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYLSV  RMEL+  L+LT+ Q+KTW+QNRRTKWK+Q
Sbjct: 180 KYLSVQDRMELAARLDLTDTQVKTWYQNRRTKWKRQ 215



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L+LT+ Q+KTW+QNRRTKWK
Sbjct: 188 MELAARLDLTDTQVKTWYQNRRTKWK 213


>gi|46047377|ref|NP_990864.1| homeobox protein HMX1 [Gallus gallus]
 gi|82112982|sp|Q9DE09.1|HMX1_CHICK RecName: Full=Homeobox protein HMX1; AltName: Full=GH6; AltName:
           Full=Homeobox protein H6
 gi|12082651|gb|AAG48561.1|AF227921_1 homeodomain protein GH6 [Gallus gallus]
          Length = 333

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  
Sbjct: 222 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAA 267



 Score = 40.8 bits (94), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 234 LAASLHLTETQVKIWFQNRRNKWK 257


>gi|225708592|gb|ACO10142.1| Homeobox protein HMX2 [Osmerus mordax]
          Length = 267

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 166 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 222

Query: 88  PLIF 91
           PL+F
Sbjct: 223 PLVF 226



 Score = 42.0 bits (97), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 176 LASSLQLTETQVKTWFQNRRNKWK 199


>gi|301616817|ref|XP_002937849.1| PREDICTED: homeobox protein HMX2-like [Xenopus (Silurana)
           tropicalis]
          Length = 252

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 152 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 208

Query: 88  PLIF 91
           PL+F
Sbjct: 209 PLVF 212



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 162 LASSLQLTETQVKTWFQNRRNKWK 185


>gi|169259802|ref|NP_001108570.1| homeobox protein HMX2 [Danio rerio]
 gi|157987311|gb|ABW07817.1| homeobox transcription factor [Danio rerio]
          Length = 267

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 168 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 224

Query: 88  PLIF 91
           PL+F
Sbjct: 225 PLVF 228



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 178 LASSLQLTETQVKTWFQNRRNKWK 201


>gi|224053139|ref|XP_002192536.1| PREDICTED: homeobox protein HMX2 [Taeniopygia guttata]
          Length = 274

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 173 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 229

Query: 88  PLIF 91
           PL+F
Sbjct: 230 PLVF 233



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 183 LASSLQLTETQVKTWFQNRRNKWK 206


>gi|391324919|ref|XP_003736989.1| PREDICTED: brain-specific homeobox protein homolog [Metaseiulus
           occidentalis]
          Length = 315

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 36/42 (85%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           KYLSV+ R +++++LNL+E Q+KTW+QNRRTKWK+Q   +L+
Sbjct: 195 KYLSVADRGQVAEILNLSETQVKTWYQNRRTKWKRQTNMRLE 236



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 24/25 (96%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++++LNL+E Q+KTW+QNRRTKWK
Sbjct: 204 QVAEILNLSETQVKTWYQNRRTKWK 228


>gi|405960256|gb|EKC26197.1| Homeobox protein ceh-9 [Crassostrea gigas]
          Length = 331

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYLS ++R E++ LLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 170 KYLSSAERAEMATLLNVTETQVKIWFQNRRTKWKKQ 205



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61
           E++ LLN+TE Q+K WFQNRRTKWK   K  ++S        L+   V+  T  Q     
Sbjct: 179 EMATLLNVTETQVKIWFQNRRTKWK---KQENISNAEAAEHKLS---VEKGTHVQKAACA 232

Query: 62  WKKQLASKLKMVAHNRPTGFYF 83
             KQ+A   K   H+ P     
Sbjct: 233 AGKQMAD--KPCHHSSPCSVVI 252


>gi|402852392|ref|XP_003890907.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX1-like [Papio
           anubis]
          Length = 346

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 226 RYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 41.2 bits (95), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259


>gi|270015153|gb|EFA11601.1| nk homeobox 7 [Tribolium castaneum]
          Length = 313

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 31/35 (88%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           KYLS S+R E++KLLN+TE Q+K WFQNRRTKWKK
Sbjct: 174 KYLSSSERSEMAKLLNVTETQVKIWFQNRRTKWKK 208



 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 25/28 (89%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           E++KLLN+TE Q+K WFQNRRTKWK +D
Sbjct: 183 EMAKLLNVTETQVKIWFQNRRTKWKKID 210


>gi|426398109|ref|XP_004065243.1| PREDICTED: homeobox protein HMX1, partial [Gorilla gorilla gorilla]
          Length = 275

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/49 (51%), Positives = 36/49 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 226 RYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 40.8 bits (94), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259


>gi|116805350|ref|NP_061815.2| homeobox protein HMX1 [Homo sapiens]
 gi|259016250|sp|Q9NP08.2|HMX1_HUMAN RecName: Full=Homeobox protein HMX1; AltName: Full=Homeobox protein
           H6
 gi|182888289|gb|AAI60031.1| H6 family homeobox 1 [synthetic construct]
          Length = 348

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 224 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 40.8 bits (94), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259


>gi|123204569|gb|ABM73583.1| homeodomain protein [Megalobrama amblycephala]
          Length = 243

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
          + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 28 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 83

Query: 87 GPLIFGAQH 95
           PL+ G+ H
Sbjct: 84 SPLLSGSNH 92



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 39 VEMANLLNLTERQIKIWFQNRRMKYK 64


>gi|363735608|ref|XP_001231298.2| PREDICTED: homeobox protein HMX2 [Gallus gallus]
          Length = 273

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|395501926|ref|XP_003755338.1| PREDICTED: homeobox protein HMX2 [Sarcophilus harrisii]
          Length = 278

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 177 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 233

Query: 88  PLIF 91
           PL+F
Sbjct: 234 PLVF 237



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 187 LASSLQLTETQVKTWFQNRRNKWK 210


>gi|289063413|ref|NP_001165900.1| H6 family homeobox 1 [Macaca mulatta]
          Length = 347

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 223 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 273



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 235 LAASLQLTETQVKIWFQNRRNKWK 258


>gi|345483555|ref|XP_003424841.1| PREDICTED: hypothetical protein LOC100679231 [Nasonia vitripennis]
          Length = 428

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           KYLSV  RMEL+  L LT+ Q+KTW+QNRRTKWK+Q     +++A
Sbjct: 220 KYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGYEIMA 264



 Score = 45.8 bits (107), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 228 MELAAKLQLTDTQVKTWYQNRRTKWK 253


>gi|82621511|gb|ABB86427.1| NVHD027-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339087|gb|ABG67807.1| CG13424A-like, partial [Nematostella vectensis]
          Length = 60

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 33/37 (89%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
          KYLSVS+RMEL+  L+LTE QIK WFQNRRTKWK+++
Sbjct: 24 KYLSVSRRMELANSLSLTETQIKIWFQNRRTKWKRKM 60



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L+LTE QIK WFQNRRTKWK
Sbjct: 32 MELANSLSLTETQIKIWFQNRRTKWK 57


>gi|156399790|ref|XP_001638684.1| predicted protein [Nematostella vectensis]
 gi|156225806|gb|EDO46621.1| predicted protein [Nematostella vectensis]
          Length = 1164

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 29   DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
            +KYL++++R EL+  L L++ QIK WFQNRRTK K++LAS++       P G ++P
Sbjct: 1065 NKYLTITRRAELANSLELSDTQIKIWFQNRRTKLKRKLASEMLFSLTPPPAGHFYP 1120



 Score = 38.5 bits (88), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 2    ELSKLLNLTEVQIKTWFQNRRTKWK 26
            EL+  L L++ QIK WFQNRRTK K
Sbjct: 1075 ELANSLELSDTQIKIWFQNRRTKLK 1099


>gi|126273001|ref|XP_001367646.1| PREDICTED: homeobox protein HMX2-like [Monodelphis domestica]
          Length = 277

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 176 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 232

Query: 88  PLIF 91
           PL+F
Sbjct: 233 PLVF 236



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 186 LASSLQLTETQVKTWFQNRRNKWK 209


>gi|193209621|ref|NP_508524.2| Protein CEH-30 [Caenorhabditis elegans]
 gi|218512072|sp|Q22909.2|HM30_CAEEL RecName: Full=Homeobox protein ceh-30
 gi|373254122|emb|CCD66474.1| Protein CEH-30 [Caenorhabditis elegans]
          Length = 237

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RM+L+  + LT+ Q+KTW+QNRRTKWK+Q  S + +++ 
Sbjct: 118 KYLSVQDRMDLAHRMGLTDTQVKTWYQNRRTKWKRQATSGMDLLSE 163



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50
           M+L+  + LT+ Q+KTW+QNRRTKWK      + S    LS+  NL+ VQ
Sbjct: 126 MDLAHRMGLTDTQVKTWYQNRRTKWKRQ----ATSGMDLLSEPGNLSAVQ 171


>gi|147906607|ref|NP_001088574.1| H6 family homeobox 2 [Xenopus laevis]
 gi|54648614|gb|AAH84979.1| LOC495452 protein [Xenopus laevis]
          Length = 266

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 166 RYLSSSERSCLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 222

Query: 88  PLIF 91
           PL+F
Sbjct: 223 PLVF 226



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 176 LASSLQLTETQVKTWFQNRRNKWK 199


>gi|390177112|ref|XP_003736279.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
 gi|388858910|gb|EIM52352.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
          Length = 591

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 488 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 529



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 498 LAASLRLTETQVKIWFQNRRNKWK 521


>gi|327267724|ref|XP_003218649.1| PREDICTED: homeobox protein HMX2-like [Anolis carolinensis]
          Length = 293

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 188 LKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 244

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 245 GMPLVF 250



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 200 LASSLQLTETQVKTWFQNRRNKWK 223


>gi|242018184|ref|XP_002429560.1| Homeobox protein MSX-1, putative [Pediculus humanus corporis]
 gi|212514514|gb|EEB16822.1| Homeobox protein MSX-1, putative [Pediculus humanus corporis]
          Length = 200

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKM--VAHNRPTGFYFP 84
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM  VA  RP   Y P
Sbjct: 53  QYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAVAAARPPHIYGP 112

Query: 85  GGGPLIFGAQHGSPTAPYFFSASMLDDSQSPRDA 118
              P +    H  P  P    A+ L  S SP  A
Sbjct: 113 PHHPALQQYFHHHPEHP----AAALFSSPSPHHA 142


>gi|300797676|ref|NP_001179544.1| homeobox protein HMX2 [Bos taurus]
 gi|296472549|tpg|DAA14664.1| TPA: H6 family homeobox 2-like [Bos taurus]
          Length = 274

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 173 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 229

Query: 88  PLIF 91
           PL+F
Sbjct: 230 PLVF 233



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 183 LASSLQLTETQVKTWFQNRRNKWK 206


>gi|56377796|dbj|BAD74122.1| homeobox-containing Msx1 homologue [Pelodiscus sinensis]
          Length = 236

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 11/82 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 132 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 189

Query: 81  FYFPGGGPLIFGAQHGSPTAPY 102
             FP GGP + GA     ++P+
Sbjct: 190 ISFPLGGPAVAGASLYGASSPF 211


>gi|165377177|ref|NP_001106998.1| homeobox protein HMX1 [Danio rerio]
 gi|157987315|gb|ABW07819.1| homeobox transcription factor SOHo [Danio rerio]
          Length = 282

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+ V  N
Sbjct: 173 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAVNFN 219



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 183 LAASLHLTETQVKIWFQNRRNKWK 206


>gi|15637263|gb|AAL04486.1|AF365972_1 transcription factor Nkx5-2 [Oryzias latipes]
          Length = 221

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 120 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 176

Query: 88  PLIF 91
           PL+F
Sbjct: 177 PLVF 180



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 130 LASSLQLTETQVKTWFQNRRNKWK 153


>gi|47551103|ref|NP_999726.1| homeobox protein Hmx [Strongylocentrotus purpuratus]
 gi|18202521|sp|Q26656.1|HMX_STRPU RecName: Full=Homeobox protein Hmx; Short=SpHmx; AltName:
           Full=H6-like
 gi|1332413|dbj|BAA12721.1| homeobox [Strongylocentrotus purpuratus]
          Length = 405

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+Q+A++L+
Sbjct: 274 VKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKRQMAAELE 317



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 286 LAANLHLTETQVKIWFQNRRNKWK 309


>gi|291412760|ref|XP_002722641.1| PREDICTED: H6 family homeobox 2 [Oryctolagus cuniculus]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 20/91 (21%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNL---TEVQIKTWFQNR- 58
           L+  L LTE Q+KTWFQNRR KWK       +S  +E + + +    T V +   F++  
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWKR-----QLSAELEAANMAHASAQTLVGMPLVFRDSS 236

Query: 59  --RTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
             R    + LA          P   Y+PGGG
Sbjct: 237 LLRVPVPRSLAF---------PAPLYYPGGG 258


>gi|164523612|gb|ABY60841.1| Nkx5-3 [Danio rerio]
          Length = 282

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+ V  N
Sbjct: 173 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAVNFN 219



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 183 LAASLHLTETQVKIWFQNRRNKWK 206


>gi|351715750|gb|EHB18669.1| Homeobox protein MSX-2 [Heterocephalus glaber]
          Length = 268

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 6/79 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           P   PL   + +G+ + P+
Sbjct: 225 PINSPLQAASIYGAASYPF 243



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|189303827|gb|ACD85817.1| brain-specific homeobox Bsh, partial [Mnemiopsis leidyi]
          Length = 227

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/40 (67%), Positives = 32/40 (80%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67
             KYLSV +RMEL+  L L+E Q+KTWFQNRR KWKKQ+A
Sbjct: 118 TQKYLSVPERMELAVSLRLSETQVKTWFQNRRMKWKKQVA 157



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L+E Q+KTWFQNRR KWK
Sbjct: 128 MELAVSLRLSETQVKTWFQNRRMKWK 153


>gi|47222328|emb|CAG05077.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 218

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|395842653|ref|XP_003794129.1| PREDICTED: homeobox protein HMX2 [Otolemur garnettii]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|149047394|gb|EDM00064.1| H6 homeo box 1 (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 333

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 213 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 263



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 225 LAASLQLTETQVKIWFQNRRNKWK 248


>gi|348588231|ref|XP_003479870.1| PREDICTED: homeobox protein HMX2-like [Cavia porcellus]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|194041606|ref|XP_001928099.1| PREDICTED: homeobox protein HMX2-like [Sus scrofa]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|443688868|gb|ELT91428.1| hypothetical protein CAPTEDRAFT_79123, partial [Capitella teleta]
          Length = 87

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 32/38 (84%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          + KYLS S+R E++ LLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 42 LKKYLSSSERAEMATLLNVTETQVKIWFQNRRTKWKKQ 79



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          E++ LLN+TE Q+K WFQNRRTKWK
Sbjct: 53 EMATLLNVTETQVKIWFQNRRTKWK 77


>gi|157821011|ref|NP_001099773.1| homeobox protein HMX2 [Rattus norvegicus]
 gi|149061281|gb|EDM11704.1| similar to Hmx2 protein (predicted), isoform CRA_b [Rattus
           norvegicus]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|49170108|ref|NP_990819.1| homeobox protein MSX-1 [Gallus gallus]
 gi|1708273|sp|P50223.1|HMGX7_CHICK RecName: Full=Homeobox protein GHOX-7; AltName: Full=CHOX-7;
           Short=Hox-7
 gi|464147|dbj|BAA01209.1| Chox-7 protein [Gallus gallus]
          Length = 288

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 7/71 (9%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN--RPT--GFY 82
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A     P   G  
Sbjct: 184 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGIS 243

Query: 83  FPGGGPLIFGA 93
           FP GGP + GA
Sbjct: 244 FPLGGPAVAGA 254


>gi|403259332|ref|XP_003922171.1| PREDICTED: homeobox protein HMX2 [Saimiri boliviensis boliviensis]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|326924092|ref|XP_003208266.1| PREDICTED: homeobox protein HMX2-like [Meleagris gallopavo]
          Length = 273

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|159155041|gb|AAI54567.1| Hmx1 protein [Danio rerio]
          Length = 164

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+ V  N
Sbjct: 55  RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAVNFN 101



 Score = 39.7 bits (91), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L+LTE Q+K WFQNRR KWK
Sbjct: 65 LAASLHLTETQVKIWFQNRRNKWK 88


>gi|354496950|ref|XP_003510586.1| PREDICTED: homeobox protein HMX2-like [Cricetulus griseus]
          Length = 299

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 196 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 252

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 253 GMPLVF 258



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 208 LASSLQLTETQVKTWFQNRRNKWK 231


>gi|3757824|emb|CAA47296.1| HBX1 protein [Echinococcus granulosus]
          Length = 368

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 36/55 (65%), Gaps = 4/55 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ   K      N PT F  P
Sbjct: 227 RYLSVYERLNLALSLNLTETQVKIWFQNRRTKWKKQNPGK----DVNSPTAFSPP 277



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 235 LNLALSLNLTETQVKIWFQNRRTKWK 260


>gi|327278938|ref|XP_003224216.1| PREDICTED: homeobox protein HMX1-like [Anolis carolinensis]
          Length = 320

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+
Sbjct: 199 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLE 242



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 211 LAASLHLTETQVKIWFQNRRNKWK 234


>gi|221379760|ref|NP_732244.3| H6-like-homeobox, isoform C [Drosophila melanogaster]
 gi|190359609|sp|Q9VEI9.3|HMX_DROME RecName: Full=Homeobox protein Hmx; Short=DHmx
 gi|134085543|gb|ABO52830.1| IP08946p [Drosophila melanogaster]
 gi|220903114|gb|AAF55432.3| H6-like-homeobox, isoform C [Drosophila melanogaster]
          Length = 592

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 491 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 532



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 501 LAASLRLTETQVKIWFQNRRNKWK 524


>gi|73998968|ref|XP_544055.2| PREDICTED: homeobox protein HMX2 [Canis lupus familiaris]
          Length = 273

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|402881727|ref|XP_003904416.1| PREDICTED: homeobox protein HMX2 [Papio anubis]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|441599791|ref|XP_003255110.2| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX2 [Nomascus
           leucogenys]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|70608207|ref|NP_666110.1| homeobox protein HMX2 [Mus musculus]
 gi|27735196|sp|P43687.3|HMX2_MOUSE RecName: Full=Homeobox protein HMX2; AltName: Full=Homeobox protein
           Nkx-5.2
 gi|19483944|gb|AAH23402.1| Hmx2 protein [Mus musculus]
 gi|74209721|dbj|BAE23589.1| unnamed protein product [Mus musculus]
 gi|148685771|gb|EDL17718.1| H6 homeobox 2 [Mus musculus]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|6754218|ref|NP_034575.1| homeobox protein HMX1 [Mus musculus]
 gi|81861331|sp|O70218.1|HMX1_MOUSE RecName: Full=Homeobox protein HMX1; AltName: Full=Homeobox protein
           H6
 gi|2978515|gb|AAC24193.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
           musculus]
 gi|3253161|gb|AAC24324.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
           musculus]
 gi|148705536|gb|EDL37483.1| H6 homeobox 1 [Mus musculus]
 gi|182888407|gb|AAI60207.1| H6 homeo box 1 [synthetic construct]
          Length = 332

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 212 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 262



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 224 LAASLQLTETQVKIWFQNRRNKWK 247


>gi|442619623|ref|NP_001262674.1| H6-like-homeobox, isoform D [Drosophila melanogaster]
 gi|440217544|gb|AGB96054.1| H6-like-homeobox, isoform D [Drosophila melanogaster]
          Length = 718

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 491 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 532



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 501 LAASLRLTETQVKIWFQNRRNKWK 524


>gi|296221410|ref|XP_002756720.1| PREDICTED: homeobox protein HMX2 [Callithrix jacchus]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 227 GMPLVF 232



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|324497813|gb|ADY39555.1| putative homebox protein [Hottentotta judaicus]
          Length = 283

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 15/90 (16%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ---LASKLKMVAHNRPTGF--YFP 84
           +YLSV +R+ L+  L LTE Q+K WFQNRRTKWKKQ   + +    +   +PT     +P
Sbjct: 183 RYLSVCERLNLALSLRLTETQVKIWFQNRRTKWKKQNPGMDANSPTIPPTQPTALQSSYP 242

Query: 85  GGGP-----LIFGAQHGSPTAPYFFSASML 109
              P     L++G Q      PY  +A+ L
Sbjct: 243 SNPPYTAAGLLYGTQ-----IPYLPTATAL 267



 Score = 41.2 bits (95), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L LTE Q+K WFQNRRTKWK
Sbjct: 191 LNLALSLRLTETQVKIWFQNRRTKWK 216


>gi|149061280|gb|EDM11703.1| similar to Hmx2 protein (predicted), isoform CRA_a [Rattus
          norvegicus]
          Length = 104

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
          + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 1  MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 57

Query: 86 GGPLIF 91
          G PL+F
Sbjct: 58 GMPLVF 63



 Score = 41.2 bits (95), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L LTE Q+KTWFQNRR KWK
Sbjct: 13 LASSLQLTETQVKTWFQNRRNKWK 36


>gi|57886|emb|CAA41944.1| Hox-7 protein [Mus musculus]
 gi|1245740|gb|AAB35456.1| Msx1=homeobox gene [mice, Peptide, 299 aa]
          Length = 299

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 48/82 (58%), Gaps = 11/82 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 195 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 252

Query: 81  FYFPGGGPLIFGAQHGSPTAPY 102
             FP GGP   GA   S + P+
Sbjct: 253 LSFPLGGPAAAGASLYSASGPF 274


>gi|9438792|gb|AAB35877.2| NK-related homeobox gene [Mus sp.]
          Length = 286

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 183 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 239

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 240 GMPLVF 245



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 195 LASSLQLTETQVKTWFQNRRNKWK 218


>gi|308512019|ref|XP_003118192.1| CRE-CEH-30 protein [Caenorhabditis remanei]
 gi|308238838|gb|EFO82790.1| CRE-CEH-30 protein [Caenorhabditis remanei]
          Length = 237

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RM+L+  + LT+ Q+KTW+QNRRTKWK+Q  S + +++ 
Sbjct: 116 KYLSVQDRMDLAHRMGLTDTQVKTWYQNRRTKWKRQATSGMDLLSE 161



 Score = 43.1 bits (100), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  + LT+ Q+KTW+QNRRTKWK
Sbjct: 124 MDLAHRMGLTDTQVKTWYQNRRTKWK 149


>gi|302563699|ref|NP_001181230.1| homeobox protein HMX2 [Macaca mulatta]
 gi|297302009|ref|XP_002805890.1| PREDICTED: homeobox protein HMX2-like isoform 2 [Macaca mulatta]
 gi|355562850|gb|EHH19444.1| hypothetical protein EGK_20148 [Macaca mulatta]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|351694611|gb|EHA97529.1| Homeobox protein HMX2 [Heterocephalus glaber]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|344296067|ref|XP_003419731.1| PREDICTED: homeobox protein HMX2-like [Loxodonta africana]
          Length = 273

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|158936908|dbj|BAF91569.1| Msx protein [Corbicula fluminea]
          Length = 347

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/91 (42%), Positives = 51/91 (56%), Gaps = 17/91 (18%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS---KLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+   +   KLKM A  +P      G 
Sbjct: 251 QYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRLHEAEIEKLKMAA--KPMLPPALGI 308

Query: 82  YFPGGGPLIFGAQHG------SPTAPYFFSA 106
            FP    L +GAQ G      +P  P+ +SA
Sbjct: 309 TFPAAAAL-YGAQFGRSQIIANPFNPFSYSA 338


>gi|395853388|ref|XP_003799194.1| PREDICTED: homeobox protein HMX1 [Otolemur garnettii]
          Length = 348

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 224 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259


>gi|359323208|ref|XP_853978.3| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC611245
           [Canis lupus familiaris]
          Length = 1022

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 916 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 959



 Score = 40.8 bits (94), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 926 LAASLHLTETQVKIWFQNRRNKWK 949


>gi|326919427|ref|XP_003205982.1| PREDICTED: homeobox protein GHOX-7-like, partial [Meleagris
           gallopavo]
 gi|63498|emb|CAA43924.1| HOX-7 [Gallus gallus]
 gi|228515|prf||1805245A Hox7 gene
          Length = 142

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 11/82 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 38  QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 95

Query: 81  FYFPGGGPLIFGAQHGSPTAPY 102
             FP GGP + GA     ++P+
Sbjct: 96  ISFPLGGPAVAGASLYGASSPF 117


>gi|83318919|emb|CAJ38797.1| Nk1 protein [Platynereis dumerilii]
          Length = 333

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 226 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 261



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  LNLTE Q+K WFQNRRTKWK  +  L ++
Sbjct: 234 LNLALSLNLTETQVKIWFQNRRTKWKKQNPGLDIN 268


>gi|156405623|ref|XP_001640831.1| predicted protein [Nematostella vectensis]
 gi|156227967|gb|EDO48768.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP---GG 86
           +YLSV +R+ L+  L LTE Q+K WFQNRRTKWKKQ    + + A  RP   + P    G
Sbjct: 180 RYLSVCERLNLALSLGLTETQVKIWFQNRRTKWKKQNPG-MDVTAPTRPNIPHGPASLAG 238

Query: 87  GPLIFGAQHGSPTAPYFFSAS 107
            P  F      P+  +++++S
Sbjct: 239 YPPGFLCGAQCPSQMHYYTSS 259



 Score = 42.0 bits (97), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 188 LNLALSLGLTETQVKIWFQNRRTKWKKQNPGMDVT 222


>gi|431908251|gb|ELK11851.1| Mitotic checkpoint protein BUB3 [Pteropus alecto]
          Length = 626

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPGGG 87
           +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          G 
Sbjct: 172 RYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV---GM 228

Query: 88  PLIF 91
           PL+F
Sbjct: 229 PLVF 232



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|82621549|gb|ABB86446.1| HLXe-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339091|gb|ABG67809.1| NK-like 1, partial [Nematostella vectensis]
          Length = 60

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 33/38 (86%)

Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
          +KYL+ SKR ELSK L +TE Q+KTWFQNRRTKW+K+L
Sbjct: 23 EKYLTESKRAELSKDLGMTETQVKTWFQNRRTKWRKEL 60



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          ELSK L +TE Q+KTWFQNRRTKW+
Sbjct: 33 ELSKDLGMTETQVKTWFQNRRTKWR 57


>gi|32816227|gb|AAP88429.1| NK-1 homeobox protein [Nematostella vectensis]
          Length = 275

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP---GG 86
           +YLSV +R+ L+  L LTE Q+K WFQNRRTKWKKQ    + + A  RP   + P    G
Sbjct: 180 RYLSVCERLNLALSLGLTETQVKIWFQNRRTKWKKQNPG-MDVTAPTRPNIPHGPASLAG 238

Query: 87  GPLIFGAQHGSPTAPYFFSAS 107
            P  F      P+  +++++S
Sbjct: 239 YPPGFLCGAQCPSQMHYYTSS 259



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 188 LNLALSLGLTETQVKIWFQNRRTKWKKQNPGMDVT 222


>gi|256070673|ref|XP_002571667.1| barh homeobox protein [Schistosoma mansoni]
 gi|353232973|emb|CCD80328.1| putative homeobox protein [Schistosoma mansoni]
          Length = 160

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 37/45 (82%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
          KYLSV  R+EL++ L+LT+ Q+KTW+QNRRTKWK+Q A   ++++
Sbjct: 30 KYLSVQDRIELAERLHLTDTQVKTWYQNRRTKWKRQTAVGFELLS 74



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 24/26 (92%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +EL++ L+LT+ Q+KTW+QNRRTKWK
Sbjct: 38 IELAERLHLTDTQVKTWYQNRRTKWK 63


>gi|344254399|gb|EGW10503.1| Homeobox protein HMX2 [Cricetulus griseus]
          Length = 316

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH          
Sbjct: 213 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 269

Query: 86  GGPLIF 91
           G PL+F
Sbjct: 270 GMPLVF 275



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 225 LASSLQLTETQVKTWFQNRRNKWK 248


>gi|224050123|ref|XP_002196215.1| PREDICTED: homeobox protein GHOX-7-like [Taeniopygia guttata]
          Length = 230

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 11/82 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 126 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 183

Query: 81  FYFPGGGPLIFGAQHGSPTAPY 102
             FP GGP + GA     ++P+
Sbjct: 184 ISFPLGGPAVAGASLYGASSPF 205


>gi|156358580|ref|XP_001624595.1| predicted protein [Nematostella vectensis]
 gi|156211385|gb|EDO32495.1| predicted protein [Nematostella vectensis]
          Length = 59

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          KYLSVS+RMEL+  L+LTE QIK WFQNRRTKWK++
Sbjct: 24 KYLSVSRRMELANSLSLTETQIKIWFQNRRTKWKRK 59



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L+LTE QIK WFQNRRTKWK
Sbjct: 32 MELANSLSLTETQIKIWFQNRRTKWK 57


>gi|396157|emb|CAA46671.1| Hox-7 [Gallus gallus]
          Length = 159

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 11/83 (13%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------ 79
            +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       
Sbjct: 54  KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAF 111

Query: 80  GFYFPGGGPLIFGAQHGSPTAPY 102
           G  FP GGP + GA     ++P+
Sbjct: 112 GISFPLGGPAVAGASLYGASSPF 134


>gi|432903781|ref|XP_004077224.1| PREDICTED: homeobox protein MSH-C [Oryzias latipes]
          Length = 241

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 9/76 (11%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPTGFYFP-- 84
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLK+ A      F FP  
Sbjct: 145 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKLAAKPLLPAFAFPLP 204

Query: 85  ----GGGPLIFGAQHG 96
                G P ++GA  G
Sbjct: 205 LSASMGAPALYGALSG 220


>gi|410976233|ref|XP_003994527.1| PREDICTED: homeobox protein HMX2 [Felis catus]
          Length = 304

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 201 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 246



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 213 LASSLQLTETQVKTWFQNRRNKWK 236


>gi|110659562|dbj|BAE98267.1| msh homeobox 1-like protein [Scyliorhinus torazame]
          Length = 282

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 14/78 (17%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 180 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 237

Query: 82  YFPGGGPL----IFGAQH 95
            FP G P+    ++GA H
Sbjct: 238 SFPIGTPVPATSLYGASH 255



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 189 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 217


>gi|327278936|ref|XP_003224215.1| PREDICTED: homeobox protein HMX1-like [Anolis carolinensis]
          Length = 221

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+
Sbjct: 100 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLE 143



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 112 LAASLHLTETQVKIWFQNRRNKWK 135


>gi|297687561|ref|XP_002821280.1| PREDICTED: homeobox protein HMX2 [Pongo abelii]
          Length = 273

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|347963918|ref|XP_310605.5| AGAP000488-PA [Anopheles gambiae str. PEST]
 gi|333466974|gb|EAA06491.5| AGAP000488-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 495 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 536



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 505 LAASLRLTETQVKIWFQNRRNKWK 528


>gi|195396503|ref|XP_002056871.1| GJ16761 [Drosophila virilis]
 gi|194146638|gb|EDW62357.1| GJ16761 [Drosophila virilis]
          Length = 281

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 166 CQKYLSVADRSDVAETLSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 213



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ L+L+E Q+KTW+QNRRTKWK
Sbjct: 177 DVAETLSLSETQVKTWYQNRRTKWK 201


>gi|70608170|ref|NP_005510.1| homeobox protein HMX2 [Homo sapiens]
 gi|152032526|sp|A2RU54.1|HMX2_HUMAN RecName: Full=Homeobox protein HMX2; AltName: Full=Homeobox protein
           H6 family member 2
 gi|119569673|gb|EAW49288.1| homeobox (H6 family) 2 [Homo sapiens]
 gi|124376338|gb|AAI32759.1| H6 family homeobox 2 [Homo sapiens]
 gi|187952521|gb|AAI37140.1| H6 family homeobox 2 [Homo sapiens]
          Length = 273

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|359066624|ref|XP_003586276.1| PREDICTED: homeobox protein HMX1-like [Bos taurus]
          Length = 347

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 224 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259


>gi|348521184|ref|XP_003448106.1| PREDICTED: homeobox protein HMX3-like [Oreochromis niloticus]
          Length = 299

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  
Sbjct: 188 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAA 233



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 200 LAASLHLTETQVKIWFQNRRNKWK 223


>gi|291223907|ref|XP_002731951.1| PREDICTED: H6 homeobox 1-like [Saccoglossus kowalevskii]
          Length = 306

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 204 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 247



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 214 LAASLHLTETQVKIWFQNRRNKWK 237


>gi|345451236|gb|AEN94298.1| homeobox protein MSX-2 [Mus musculus]
          Length = 259

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|426366471|ref|XP_004050281.1| PREDICTED: homeobox protein HMX2 [Gorilla gorilla gorilla]
          Length = 273

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 38/50 (76%), Gaps = 2/50 (4%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAH 75
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+   +AH
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAH 219



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|431918166|gb|ELK17394.1| Homeobox protein MSX-2 [Pteropus alecto]
          Length = 267

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINAPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|347963223|ref|XP_003436924.1| AGAP013373-PA [Anopheles gambiae str. PEST]
 gi|333467301|gb|EGK96522.1| AGAP013373-PA [Anopheles gambiae str. PEST]
          Length = 216

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          YL+V+KR EL++ L LTE QIKTWFQNRRTK+KKQ  S+ K
Sbjct: 43 YLNVNKRFELAQCLGLTETQIKTWFQNRRTKFKKQQDSRNK 83



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          EL++ L LTE QIKTWFQNRRTK+K
Sbjct: 51 ELAQCLGLTETQIKTWFQNRRTKFK 75


>gi|148709179|gb|EDL41125.1| homeobox, msh-like 2 [Mus musculus]
          Length = 283

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 181 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 240

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 241 PINSPLQAASIYGASY 256



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 190 EFSSSLNLTETQVKIWFQNRRAKAK 214


>gi|358412798|ref|XP_003582402.1| PREDICTED: homeobox protein HMX1-like [Bos taurus]
          Length = 347

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 224 LKRYLSSAERAGLTASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 236 LTASLQLTETQVKIWFQNRRNKWK 259


>gi|406587|emb|CAA53079.1| NK-type homeobox [Mus musculus]
          Length = 458

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 352 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 395



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 362 LAASLHLTETQVKIWFQNRRNKWK 385


>gi|444713456|gb|ELW54355.1| Homeobox protein Hox-A6 [Tupaia chinensis]
          Length = 265

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           +E++  L LTE QI  W      ++ + ++ L+  +R+E++  L LTE QIK WFQNRR 
Sbjct: 182 IEIANALCLTERQITIWTLELEKEFHF-NRSLTRRRRIEIANALCLTERQIKIWFQNRRM 240

Query: 61  KWKKQLASKLKMVAHNRPTG 80
           KWKK+     K++   +P+G
Sbjct: 241 KWKKE----NKLINSTQPSG 256


>gi|354471879|ref|XP_003498168.1| PREDICTED: homeobox protein MSX-2-like [Cricetulus griseus]
 gi|344240408|gb|EGV96511.1| Homeobox protein MSX-2 [Cricetulus griseus]
          Length = 267

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL    +  + + F
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPSGF 220


>gi|156390815|ref|XP_001635465.1| predicted protein [Nematostella vectensis]
 gi|156222559|gb|EDO43402.1| predicted protein [Nematostella vectensis]
          Length = 71

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 34/38 (89%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67
          KYL++S+R EL+K + L++ Q+KTWFQNRRTKWKKQ+A
Sbjct: 34 KYLTISERNELAKSMYLSDTQVKTWFQNRRTKWKKQMA 71



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          EL+K + L++ Q+KTWFQNRRTKWK
Sbjct: 43 ELAKSMYLSDTQVKTWFQNRRTKWK 67


>gi|313241164|emb|CBY33457.1| unnamed protein product [Oikopleura dioica]
          Length = 285

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           ++YLSV KR+EL+  L L+E QIK WFQNRRTKWK++  S  ++ +H     +Y   G  
Sbjct: 148 NRYLSVGKRVELADSLGLSETQIKIWFQNRRTKWKREYLSDWELWSHQ---SYYAMHG-- 202

Query: 89  LIFGAQHGSPTA 100
           ++ G   GS T 
Sbjct: 203 VLAGQAAGSATG 214



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           +EL+  L L+E QIK WFQNRRTKWK   +YLS
Sbjct: 157 VELADSLGLSETQIKIWFQNRRTKWKR--EYLS 187


>gi|114633187|ref|XP_508091.2| PREDICTED: homeobox protein HMX2 [Pan troglodytes]
          Length = 273

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L LTE Q+KTWFQNRR KWK+QL+++L+  
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205


>gi|328702962|ref|XP_003242054.1| PREDICTED: homeobox protein koza-like [Acyrthosiphon pisum]
          Length = 258

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 32/36 (88%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q
Sbjct: 100 KYLSVADRSDVAEALNLSETQVKTWYQNRRTKWKRQ 135



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 109 DVAEALNLSETQVKTWYQNRRTKWK 133


>gi|123308|sp|P28361.1|MSX1_CHICK RecName: Full=Homeobox protein MSX-1; AltName: Full=Homeobox
           protein Hox-7; Short=CHOX-7; AltName: Full=Msh homeobox
           1-like protein
          Length = 249

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 11/82 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 145 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 202

Query: 81  FYFPGGGPLIFGAQHGSPTAPY 102
             FP GGP + GA     ++P+
Sbjct: 203 ISFPLGGPAVAGASLYGASSPF 224


>gi|432923640|ref|XP_004080488.1| PREDICTED: homeobox protein HMX3-B-like [Oryzias latipes]
          Length = 290

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 187 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 232



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 199 LAASLHLTETQVKIWFQNRRNKWK 222


>gi|341874433|gb|EGT30368.1| CBN-CEH-30 protein [Caenorhabditis brenneri]
          Length = 236

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RM+L+  + L++ Q+KTW+QNRRTKWK+Q  + + ++A 
Sbjct: 116 KYLSVQDRMDLAHRMGLSDTQVKTWYQNRRTKWKRQATTGIDLLAE 161



 Score = 42.0 bits (97), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  + L++ Q+KTW+QNRRTKWK
Sbjct: 124 MDLAHRMGLSDTQVKTWYQNRRTKWK 149


>gi|82245461|sp|Q90XN9.1|HMX3B_ORYLA RecName: Full=Homeobox protein HMX3-B; AltName: Full=Homeobox
           protein H6 family member 3-B; AltName: Full=Homeobox
           protein Nkx-5.1.2; AltName: Full=OlNkx-5.1.2
 gi|15637261|gb|AAL04485.1|AF365971_1 transcription factor Nkx5-1.2 [Oryzias latipes]
          Length = 290

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 187 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 232



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 199 LAASLHLTETQVKIWFQNRRNKWK 222


>gi|354496948|ref|XP_003510585.1| PREDICTED: hypothetical protein LOC100767995 [Cricetulus griseus]
          Length = 455

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 349 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 392



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 359 LAASLHLTETQVKIWFQNRRNKWK 382


>gi|197631360|gb|ACH70609.1| NK-like homeobox protein 1a [Capitella teleta]
          Length = 148

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 39 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 74



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 47 LNLALSLNLTETQVKIWFQNRRTKWK 72


>gi|195349077|ref|XP_002041073.1| GM15242 [Drosophila sechellia]
 gi|194122678|gb|EDW44721.1| GM15242 [Drosophila sechellia]
          Length = 280

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 159 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELEAA 202



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 8/58 (13%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           L+  L LTE Q+K WFQNRR KWK       ++  +E +   NLTE  + +  ++ R+
Sbjct: 169 LAASLRLTETQVKIWFQNRRNKWKR-----QLAAELEAA---NLTEADMDSDSEHERS 218


>gi|195133470|ref|XP_002011162.1| GI16386 [Drosophila mojavensis]
 gi|193907137|gb|EDW06004.1| GI16386 [Drosophila mojavensis]
          Length = 185

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R ++++ L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 69  CQKYLSVADRSDVAETLSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 116



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ L+L+E Q+KTW+QNRRTKWK
Sbjct: 80  DVAETLSLSETQVKTWYQNRRTKWK 104


>gi|308511805|ref|XP_003118085.1| CRE-CEH-31 protein [Caenorhabditis remanei]
 gi|308238731|gb|EFO82683.1| CRE-CEH-31 protein [Caenorhabditis remanei]
          Length = 266

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV  RMEL+  + LT+ Q+KTW+QNRRTKWK+Q +  + ++
Sbjct: 122 KYLSVQDRMELAHRMGLTDTQVKTWYQNRRTKWKRQASVGMDLL 165



 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 59/125 (47%), Gaps = 16/125 (12%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           MEL+  + LT+ Q+KTW+QNRRTKWK   +  SV   + L    N+  VQ     Q  RT
Sbjct: 130 MELAHRMGLTDTQVKTWYQNRRTKWK---RQASVGMDL-LHDAGNMAAVQ-----QLLRT 180

Query: 61  K--WKKQLASKLKMV-AHNRPTGFYFPGGGPLIFGAQHGSPTAPYFFSAS--MLDDSQSP 115
              W   L+    M    NRP   + P   P    +   S  +   F A+  M DD  SP
Sbjct: 181 NPYWANYLSQNTAMFGGANRP--MFNPLVVPSSMVSNSNSQISLLQFLAAQNMKDDMNSP 238

Query: 116 RDAPG 120
           +D+P 
Sbjct: 239 KDSPS 243


>gi|56718233|gb|AAW24452.1| CG13424-related protein 1 [Oikopleura dioica]
          Length = 305

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           ++YLSV KR+EL+  L L+E QIK WFQNRRTKWK++  S  ++ +H     +Y   G  
Sbjct: 187 NRYLSVGKRVELADSLGLSETQIKIWFQNRRTKWKREYLSDWELWSHQ---SYYAMHG-- 241

Query: 89  LIFGAQHGSPTA 100
           ++ G   GS T 
Sbjct: 242 VLAGQAAGSATG 253



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           +EL+  L L+E QIK WFQNRRTKWK   +YLS
Sbjct: 196 VELADSLGLSETQIKIWFQNRRTKWK--REYLS 226


>gi|157820981|ref|NP_001099772.1| homeobox protein HMX3 [Rattus norvegicus]
 gi|149061279|gb|EDM11702.1| similar to homeodomain protein (predicted) [Rattus norvegicus]
          Length = 356

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|91090023|ref|XP_967446.1| PREDICTED: similar to H6 family homeobox 3 [Tribolium castaneum]
 gi|270013529|gb|EFA09977.1| hypothetical protein TcasGA2_TC012136 [Tribolium castaneum]
          Length = 432

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 297 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 340



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 307 LAASLHLTETQVKIWFQNRRNKWK 330


>gi|268578669|ref|XP_002644317.1| C. briggsae CBR-CEH-30 protein [Caenorhabditis briggsae]
 gi|218526427|sp|A8XJD0.1|HM30_CAEBR RecName: Full=Homeobox protein ceh-30
          Length = 233

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 35/46 (76%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  RM+L+  + L++ Q+KTW+QNRRTKWK+Q  S + +++ 
Sbjct: 111 KYLSVQDRMDLAHRMGLSDTQVKTWYQNRRTKWKRQATSGMDLLSE 156



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L+  + L++ Q+KTW+QNRRTKWK
Sbjct: 119 MDLAHRMGLSDTQVKTWYQNRRTKWK 144


>gi|324521156|gb|ADY47792.1| Homeobox protein ceh-30 [Ascaris suum]
          Length = 294

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV  RM+L++ + L++ Q+KTW+QNRRTKWK+Q A  + ++
Sbjct: 121 KYLSVQDRMDLAQRMGLSDTQVKTWYQNRRTKWKRQAAVGMDLL 164



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           M+L++ + L++ Q+KTW+QNRRTKWK
Sbjct: 129 MDLAQRMGLSDTQVKTWYQNRRTKWK 154


>gi|50978788|ref|NP_001003098.1| homeobox protein MSX-2 [Canis lupus familiaris]
 gi|42559526|sp|Q9GK08.1|MSX2_CANFA RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8
 gi|12049571|emb|CAC19897.1| muscle segmentation homologue (MSX2) [Canis lupus familiaris]
 gi|13811931|emb|CAC37368.1| muscle segmentation homologue (MSX2) [Canis lupus familiaris]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K + +        EL KL    +  + + F
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE-------AELEKLKMAAKPMLPSGF 220


>gi|114326504|ref|NP_038629.2| homeobox protein MSX-2 [Mus musculus]
 gi|547660|sp|Q03358.2|MSX2_MOUSE RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8-1
 gi|193966|gb|AAA03477.1| homeobox protein [Mus musculus]
 gi|74203524|dbj|BAE20914.1| unnamed protein product [Mus musculus]
 gi|74228786|dbj|BAE21882.1| unnamed protein product [Mus musculus]
 gi|223461194|gb|AAI41133.1| Homeobox, msh-like 2 [Mus musculus]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAK 198


>gi|395817018|ref|XP_003781975.1| PREDICTED: homeobox protein MSX-2 [Otolemur garnettii]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL    +  + + F
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPSGF 220


>gi|313233934|emb|CBY10102.1| unnamed protein product [Oikopleura dioica]
          Length = 342

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGP 88
           ++YLSV KR+EL+  L L+E QIK WFQNRRTKWK++  S  ++ +H     +Y   G  
Sbjct: 205 NRYLSVGKRVELADSLGLSETQIKIWFQNRRTKWKREYLSDWELWSHQ---SYYAMHG-- 259

Query: 89  LIFGAQHGSPTA 100
           ++ G   GS T 
Sbjct: 260 VLAGQAAGSATG 271



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           +EL+  L L+E QIK WFQNRRTKWK   +YLS
Sbjct: 214 VELADSLGLSETQIKIWFQNRRTKWKR--EYLS 244


>gi|156387522|ref|XP_001634252.1| predicted protein [Nematostella vectensis]
 gi|156221333|gb|EDO42189.1| predicted protein [Nematostella vectensis]
          Length = 264

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPT 79
           +  KYL+ ++R+E++  L LTE+QIK WFQNRR KWK++    L+  A+  PT
Sbjct: 173 HFSKYLTRTRRIEIATTLKLTEMQIKIWFQNRRMKWKREFKDSLQKPANGEPT 225



 Score = 41.6 bits (96), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++  L LTE+QIK WFQNRR KWK
Sbjct: 184 IEIATTLKLTEMQIKIWFQNRRMKWK 209


>gi|149726062|ref|XP_001502840.1| PREDICTED: homeobox protein MSX-2-like [Equus caballus]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|348508580|ref|XP_003441832.1| PREDICTED: homeobox protein HMX3-B-like [Oreochromis niloticus]
          Length = 290

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 187 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 232



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 199 LAASLHLTETQVKIWFQNRRNKWK 222


>gi|341874296|gb|EGT30231.1| CBN-CEH-31 protein [Caenorhabditis brenneri]
          Length = 264

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV  RMEL+  + LT+ Q+KTW+QNRRTKWK+Q +  + ++
Sbjct: 122 KYLSVQDRMELAHRMGLTDTQVKTWYQNRRTKWKRQASVGMDLL 165



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 11/79 (13%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           MEL+  + LT+ Q+KTW+QNRRTKWK   +  SV   + L+   N+  VQ     Q  RT
Sbjct: 130 MELAHRMGLTDTQVKTWYQNRRTKWK---RQASVGMDL-LNDAGNMAAVQ-----QLLRT 180

Query: 61  K--WKKQLASKLKMVAHNR 77
              W   LA    M   NR
Sbjct: 181 NPYWANYLAQNPGMFGANR 199


>gi|8248642|gb|AAC60657.2| Hox8 [Mus sp.]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAK 198


>gi|57888|emb|CAA41945.1| Hox-8 protein [Mus musculus]
          Length = 268

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 166 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 225

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 226 PINSPLQAASIYGASY 241



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 175 EFSSSLNLTETQVKIWFQNRRAKAK 199


>gi|212646738|ref|NP_508525.3| Protein CEH-31 [Caenorhabditis elegans]
 gi|218512073|sp|Q22910.2|HM31_CAEEL RecName: Full=Homeobox protein ceh-31
 gi|373254124|emb|CCD66476.1| Protein CEH-31 [Caenorhabditis elegans]
          Length = 260

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV  RMEL+  + LT+ Q+KTW+QNRRTKWK+Q +  + ++
Sbjct: 117 KYLSVQDRMELAHRMGLTDTQVKTWYQNRRTKWKRQASVGMDLL 160



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 16/126 (12%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           MEL+  + LT+ Q+KTW+QNRRTKWK   +  SV   + L    N+  VQ     Q  RT
Sbjct: 125 MELAHRMGLTDTQVKTWYQNRRTKWK---RQASVGMDL-LHDAGNMAAVQ-----QLLRT 175

Query: 61  K--WKKQLASKLKM--VAHNRP--TGFYFPGGGPLIFGAQHGSPTAPYFFSASMLDDSQS 114
              W   L+    M   ++NRP       P    +I  +   +    +  S ++ DD  S
Sbjct: 176 NPYWANYLSQNTSMFGASNNRPVFNSLVVPTSS-MIPASNSQNSLLQFLASQNVKDDISS 234

Query: 115 PRDAPG 120
           P+++P 
Sbjct: 235 PKESPS 240


>gi|301763116|ref|XP_002916975.1| PREDICTED: homeobox protein MSX-2-like [Ailuropoda melanoleuca]
 gi|281351248|gb|EFB26832.1| hypothetical protein PANDA_005126 [Ailuropoda melanoleuca]
          Length = 267

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|322790110|gb|EFZ15143.1| hypothetical protein SINV_13435 [Solenopsis invicta]
          Length = 203

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 83  CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 130



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 94  DVADALSLSETQVKTWYQNRRTKWK 118


>gi|158634542|gb|ABW76121.1| MsxA [Petromyzon marinus]
          Length = 318

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 43/71 (60%), Gaps = 11/71 (15%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR----PTGFY 82
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +    P GF 
Sbjct: 215 QYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAAAKPLLTPAGF- 273

Query: 83  FPGGGPLIFGA 93
              G P  FGA
Sbjct: 274 ---GLPFQFGA 281



 Score = 40.8 bits (94), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL 43
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL
Sbjct: 224 EFSNSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKL 258


>gi|317419511|emb|CBN81548.1| Homeobox protein HMX3-B [Dicentrarchus labrax]
          Length = 290

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 187 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 232



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 199 LAASLHLTETQVKIWFQNRRNKWK 222


>gi|260801359|ref|XP_002595563.1| hypothetical protein BRAFLDRAFT_291044 [Branchiostoma floridae]
 gi|229280810|gb|EEN51575.1| hypothetical protein BRAFLDRAFT_291044 [Branchiostoma floridae]
          Length = 308

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 15/77 (19%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ----LASKLKMVAHNRPTGFYFPG 85
           KYL+ ++R EL++ + LT+ Q+KTWFQNRR KWK+Q        L M  H       + G
Sbjct: 183 KYLAAAERQELAQRIGLTDTQVKTWFQNRRMKWKRQQQEAQTQALSMSLHG------YAG 236

Query: 86  GGPLIFGAQHGSPTAPY 102
            GPL+       P APY
Sbjct: 237 TGPLLT-----DPRAPY 248



 Score = 42.0 bits (97), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 21/25 (84%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL++ + LT+ Q+KTWFQNRR KWK
Sbjct: 192 ELAQRIGLTDTQVKTWFQNRRMKWK 216


>gi|199581471|gb|ACH89437.1| NK-like homeobox protein 5 [Capitella teleta]
          Length = 402

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ ++
Sbjct: 277 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADIE 318



 Score = 41.6 bits (96), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 287 LAASLHLTETQVKIWFQNRRNKWK 310


>gi|395505112|ref|XP_003756889.1| PREDICTED: homeobox protein MSX-2-like isoform 1 [Sarcophilus
           harrisii]
          Length = 262

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 160 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 219

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           P   PL   + +G P+ P+
Sbjct: 220 PINSPLQAASIYG-PSYPF 237



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 169 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 197


>gi|208401106|gb|ACI26669.1| NK-like homeobox protein 1b [Capitella teleta]
          Length = 165

 Score = 58.2 bits (139), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 55 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 90



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 63 LNLALSLNLTETQVKIWFQNRRTKWK 88


>gi|345311143|ref|XP_003429063.1| PREDICTED: homeobox protein HMX1-like [Ornithorhynchus anatinus]
          Length = 229

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
             +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 116 AKRYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAA 161



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 128 LAASLQLTETQVKIWFQNRRNKWK 151


>gi|170048399|ref|XP_001852290.1| nk homeobox protein [Culex quinquefasciatus]
 gi|167870534|gb|EDS33917.1| nk homeobox protein [Culex quinquefasciatus]
          Length = 239

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 135 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 176



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 145 LAASLRLTETQVKIWFQNRRNKWK 168


>gi|170588761|ref|XP_001899142.1| Homeobox protein ceh-9 [Brugia malayi]
 gi|158593355|gb|EDP31950.1| Homeobox protein ceh-9, putative [Brugia malayi]
          Length = 158

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           KYLS  +R EL+KLLN+TE Q+K WFQNRRTKWKK
Sbjct: 100 KYLSSCERSELAKLLNVTETQVKIWFQNRRTKWKK 134



 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/25 (80%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+KLLN+TE Q+K WFQNRRTKWK
Sbjct: 109 ELAKLLNVTETQVKIWFQNRRTKWK 133


>gi|395842723|ref|XP_003794163.1| PREDICTED: homeobox protein HMX3 [Otolemur garnettii]
          Length = 340

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 233 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 276



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 243 LAASLHLTETQVKIWFQNRRNKWK 266


>gi|391329564|ref|XP_003739241.1| PREDICTED: homeobox protein HMX3-like [Metaseiulus occidentalis]
          Length = 424

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
             +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++++
Sbjct: 244 CKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAEIE 287



 Score = 40.8 bits (94), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 256 LAASLHLTETQVKIWFQNRRNKWK 279


>gi|344254398|gb|EGW10502.1| Homeobox protein HMX3 [Cricetulus griseus]
          Length = 257

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 151 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 194



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 161 LAASLHLTETQVKIWFQNRRNKWK 184


>gi|110754968|ref|XP_396835.3| PREDICTED: homeobox protein GBX-1-like [Apis mellifera]
          Length = 222

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 102 CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 149



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 113 DVADALSLSETQVKTWYQNRRTKWK 137


>gi|3395529|emb|CAA08911.1| homeodomain protein [Mus musculus]
          Length = 356

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|410895429|ref|XP_003961202.1| PREDICTED: homeobox protein HMX3-B-like [Takifugu rubripes]
          Length = 289

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 186 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 231



 Score = 39.7 bits (91), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 198 LAASLHLTETQVKIWFQNRRNKWK 221


>gi|383848446|ref|XP_003699861.1| PREDICTED: barH-like 2 homeobox protein-like [Megachile rotundata]
          Length = 222

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 102 CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 149



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 113 DVADALSLSETQVKTWYQNRRTKWK 137


>gi|297302006|ref|XP_002808561.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Macaca
           mulatta]
          Length = 357

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|157787085|ref|NP_032283.3| homeobox protein HMX3 [Mus musculus]
 gi|341941024|sp|P42581.3|HMX3_MOUSE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|148685770|gb|EDL17717.1| H6 homeobox 3 [Mus musculus]
 gi|223460068|gb|AAI39484.1| H6 homeo box 3 [Mus musculus]
 gi|223460368|gb|AAI39483.1| H6 homeo box 3 [Mus musculus]
          Length = 356

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|426366479|ref|XP_004050285.1| PREDICTED: homeobox protein HMX3 [Gorilla gorilla gorilla]
          Length = 563

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 456 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 499



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61
           +YLS S+R  L+  L+LTE Q+K WFQNRR K
Sbjct: 307 RYLSSSERAGLAASLHLTETQVKIWFQNRRNK 338



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 466 LAASLHLTETQVKIWFQNRRNKWK 489


>gi|402881721|ref|XP_003904413.1| PREDICTED: homeobox protein HMX3 [Papio anubis]
          Length = 357

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|395505114|ref|XP_003756890.1| PREDICTED: homeobox protein MSX-2-like isoform 2 [Sarcophilus
           harrisii]
          Length = 275

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 173 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 232

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           P   PL   + +G P+ P+
Sbjct: 233 PINSPLQAASIYG-PSYPF 250



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 182 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 210


>gi|380030545|ref|XP_003698906.1| PREDICTED: barH-like 2 homeobox protein-like [Apis florea]
          Length = 222

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 102 CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 149



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 113 DVADALSLSETQVKTWYQNRRTKWK 137


>gi|260811085|ref|XP_002600253.1| bar-class homeodomain protein [Branchiostoma floridae]
 gi|229285539|gb|EEN56265.1| bar-class homeodomain protein [Branchiostoma floridae]
          Length = 202

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67
             KYLSVS+R E+++ L L+E QIKTW+QNRRTKWK++ +
Sbjct: 100 CQKYLSVSERAEVARALGLSETQIKTWYQNRRTKWKRETS 139



 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 29/38 (76%), Gaps = 3/38 (7%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRME 39
           E+++ L L+E QIKTW+QNRRTKWK   +  SVSKR E
Sbjct: 111 EVARALGLSETQIKTWYQNRRTKWK---RETSVSKRWE 145


>gi|195110715|ref|XP_001999925.1| GI24800 [Drosophila mojavensis]
 gi|193916519|gb|EDW15386.1| GI24800 [Drosophila mojavensis]
          Length = 754

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS-KLKMVAHNRPTGFYFPGGGP 88
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ     +       PTG  F   GP
Sbjct: 663 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTLPPPTGGSF---GP 719

Query: 89  LIFGAQ----HGSPTAPY 102
             + +     H  P  PY
Sbjct: 720 GAYASSLLYPHAVPYPPY 737



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V
Sbjct: 671 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 704


>gi|157821167|ref|NP_001101833.1| homeobox protein HMX1 [Rattus norvegicus]
 gi|149047393|gb|EDM00063.1| H6 homeo box 1 (predicted), isoform CRA_a [Rattus norvegicus]
          Length = 196

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 76  LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 126



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 88  LAASLQLTETQVKIWFQNRRNKWK 111


>gi|340711570|ref|XP_003394348.1| PREDICTED: barH-like 2 homeobox protein-like [Bombus terrestris]
 gi|350416018|ref|XP_003490818.1| PREDICTED: barH-like 2 homeobox protein-like [Bombus impatiens]
          Length = 222

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 102 CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 149



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 113 DVADALSLSETQVKTWYQNRRTKWK 137


>gi|194205572|ref|XP_001915073.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Equus
           caballus]
          Length = 358

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 251 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 294



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 261 LAASLHLTETQVKIWFQNRRNKWK 284


>gi|319429390|gb|ADV56970.1| homeodomain protein HoxD3a [Ochetobius elongatus]
          Length = 296

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 173 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 228

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 229 SPPLSGSNH 237



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 184 VEMANLLNLTERQIKIWFQNRRMKYK 209


>gi|195391542|ref|XP_002054419.1| GJ24443 [Drosophila virilis]
 gi|194152505|gb|EDW67939.1| GJ24443 [Drosophila virilis]
          Length = 289

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 186 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 227



 Score = 39.7 bits (91), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 196 LAASLRLTETQVKIWFQNRRNKWK 219


>gi|301632951|ref|XP_002945543.1| PREDICTED: homeobox protein ceh-1-like [Xenopus (Silurana)
           tropicalis]
          Length = 194

 Score = 58.2 bits (139), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 70  SRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQ 106



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 21/118 (17%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           + L+  L+LTE Q+K WFQNRRTKWK      S+  R                  QN  T
Sbjct: 79  LSLALTLHLTETQVKIWFQNRRTKWKKQQPIGSLEGR--------------GCSIQNCPT 124

Query: 61  KWKKQLASKLKMVAHNRPTGFYFPGGGPLIFGAQHGSPTAPYFFSASMLDDSQSPRDA 118
               +    L     N P   + P  G    GA H SP    FFS        SP  A
Sbjct: 125 IPGPRFTPPLP----NYPCATHIPHIG---AGANHLSPFPGIFFSPPSTSFGLSPTGA 175


>gi|340726475|ref|XP_003401583.1| PREDICTED: hypothetical protein LOC100646128 [Bombus terrestris]
          Length = 567

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 398 LKRYLSSSERAGLAATLRLTETQVKIWFQNRRNKWKRQLAAELE 441



 Score = 40.4 bits (93), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 410 LAATLRLTETQVKIWFQNRRNKWK 433


>gi|410949182|ref|XP_003981302.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-2 [Felis
           catus]
          Length = 389

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 287 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 346

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 347 PINSPLQAASIYGASY 362



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL    +  + + F
Sbjct: 296 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPSGF 342


>gi|327265386|ref|XP_003217489.1| PREDICTED: homeobox protein MSX-2-like [Anolis carolinensis]
          Length = 269

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 167 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 226

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 227 PINSPLQAASLYGT 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 176 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 204


>gi|195110703|ref|XP_001999919.1| GI24795 [Drosophila mojavensis]
 gi|193916513|gb|EDW15380.1| GI24795 [Drosophila mojavensis]
          Length = 307

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 202 LKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 245



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 214 LAASLRLTETQVKIWFQNRRNKWK 237


>gi|357617769|gb|EHJ70982.1| putative H6 family homeobox 3 [Danaus plexippus]
          Length = 341

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 230 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 273



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 240 LAASLHLTETQVKIWFQNRRNKWK 263


>gi|198450206|ref|XP_001357880.2| GA19667 [Drosophila pseudoobscura pseudoobscura]
 gi|198130935|gb|EAL27016.2| GA19667 [Drosophila pseudoobscura pseudoobscura]
          Length = 678

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 42/79 (53%), Gaps = 10/79 (12%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPT------GFYF 83
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ       +  N PT      G Y 
Sbjct: 587 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPG----MDVNSPTIPPPAGGSYG 642

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           PG         H  P  PY
Sbjct: 643 PGAYASSLLYPHAVPYPPY 661



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V
Sbjct: 595 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 628


>gi|351704084|gb|EHB07003.1| NK1 transcription factor-related protein 1 [Heterocephalus glaber]
          Length = 290

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 231 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 266



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
           + L+  L+LTE Q+K WFQNRRTKWK  +  LS
Sbjct: 239 LNLALSLSLTETQVKIWFQNRRTKWKKQNPVLS 271


>gi|321465472|gb|EFX76473.1| hypothetical protein DAPPUDRAFT_55072 [Daphnia pulex]
          Length = 71

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 35/44 (79%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
          KYLSV  R+EL+  L LT+ Q+KTW+QNRRTKWK+Q A  L+++
Sbjct: 28 KYLSVQDRLELAAKLGLTDTQVKTWYQNRRTKWKRQTAVGLELL 71



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +EL+  L LT+ Q+KTW+QNRRTKWK
Sbjct: 36 LELAAKLGLTDTQVKTWYQNRRTKWK 61


>gi|395505116|ref|XP_003756891.1| PREDICTED: homeobox protein MSX-2-like isoform 3 [Sarcophilus
           harrisii]
          Length = 262

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 7/79 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 160 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 219

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           P   PL   + +G P+ P+
Sbjct: 220 PINSPLQAASIYG-PSYPF 237



 Score = 39.7 bits (91), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 169 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 197


>gi|195158361|ref|XP_002020060.1| GL13779 [Drosophila persimilis]
 gi|194116829|gb|EDW38872.1| GL13779 [Drosophila persimilis]
          Length = 324

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 65  RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 106



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L LTE Q+K WFQNRR KWK
Sbjct: 75 LAASLRLTETQVKIWFQNRRNKWK 98


>gi|194041604|ref|XP_001928044.1| PREDICTED: homeobox protein HMX3 [Sus scrofa]
          Length = 357

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|5669121|gb|AAD46170.1|AF151667_1 sex combs reduced homeobox protein [Alitta virens]
          Length = 96

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
          + ++YL+  +R+E++  LNLTE QIK WFQNRR KWKK+   KL  +A ++ T    P G
Sbjct: 31 HFNRYLTRRRRIEIAHALNLTERQIKIWFQNRRMKWKKE--HKLGHLAKSQGTKLD-PTG 87

Query: 87 GPL 89
          GP+
Sbjct: 88 GPI 90



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSK 36
          +E++  LNLTE QIK WFQNRR KWK   K   ++K
Sbjct: 42 IEIAHALNLTERQIKIWFQNRRMKWKKEHKLGHLAK 77


>gi|359319225|ref|XP_003639026.1| PREDICTED: NK1 transcription factor-related protein 1-like [Canis
           lupus familiaris]
          Length = 413

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 284 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 319



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 292 LNLALSLSLTETQVKIWFQNRRTKWK 317


>gi|402592355|gb|EJW86284.1| hypothetical protein WUBG_02805, partial [Wuchereria bancrofti]
          Length = 246

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV  RM+L++ + L++ Q+KTW+QNRRTKWK+Q A  + ++
Sbjct: 57  KYLSVQDRMDLAQRMGLSDTQVKTWYQNRRTKWKRQAAVGMDLL 100



 Score = 42.4 bits (98), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          M+L++ + L++ Q+KTW+QNRRTKWK
Sbjct: 65 MDLAQRMGLSDTQVKTWYQNRRTKWK 90


>gi|348507220|ref|XP_003441154.1| PREDICTED: homeobox protein MSH-C-like [Oreochromis niloticus]
          Length = 255

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 9/76 (11%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK---------QLASKLKMVAHNRPTG 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+         +LA+K  + A   P  
Sbjct: 159 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKLATKPLLPAFAFPFP 218

Query: 81  FYFPGGGPLIFGAQHG 96
              P G P ++GA +G
Sbjct: 219 LSAPIGAPALYGALNG 234


>gi|397490741|ref|XP_003816351.1| PREDICTED: homeobox protein HMX3 [Pan paniscus]
          Length = 357

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|157743259|ref|NP_001099044.1| homeobox protein HMX3 [Homo sapiens]
 gi|190359524|sp|A6NHT5.1|HMX3_HUMAN RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|119569674|gb|EAW49289.1| hCG1781691 [Homo sapiens]
          Length = 357

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|359080253|ref|XP_003587958.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
          Length = 359

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 252 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 295



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 262 LAASLHLTETQVKIWFQNRRNKWK 285


>gi|327267684|ref|XP_003218629.1| PREDICTED: homeobox protein HMX3-like [Anolis carolinensis]
          Length = 341

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 236 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 279



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 246 LAASLHLTETQVKIWFQNRRNKWK 269


>gi|189029591|sp|Q15270.2|NKX11_HUMAN RecName: Full=NK1 transcription factor-related protein 1; AltName:
           Full=Homeobox protein 153; Short=HPX-153; AltName:
           Full=Homeobox protein SAX-2; AltName: Full=NKX-1.1
          Length = 411

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 282 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 317



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 290 LNLALSLSLTETQVKIWFQNRRTKWK 315


>gi|402593063|gb|EJW86990.1| hypothetical protein WUBG_02098, partial [Wuchereria bancrofti]
          Length = 75

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
          KYLS  +R EL+KLLN+TE Q+K WFQNRRTKWKK
Sbjct: 22 KYLSSCERGELAKLLNVTETQVKIWFQNRRTKWKK 56



 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 29/36 (80%), Gaps = 2/36 (5%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK--YVDKYLSVS 35
          EL+KLLN+TE Q+K WFQNRRTKWK   ++K ++V 
Sbjct: 31 ELAKLLNVTETQVKIWFQNRRTKWKKGEIEKNVAVE 66


>gi|357614122|gb|EHJ68922.1| hypothetical protein KGM_06193 [Danaus plexippus]
          Length = 190

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 37/53 (69%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
             KYLSV+ R +++  LNL+E Q+KTW+QNRRTKWK+Q   +L+ +     +G
Sbjct: 111 CQKYLSVADRGDVADALNLSETQVKTWYQNRRTKWKRQNQLRLEQLRAQAASG 163



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  LNL+E Q+KTW+QNRRTKWK
Sbjct: 122 DVADALNLSETQVKTWYQNRRTKWK 146


>gi|282165680|ref|NP_001163947.1| NK1 homeobox 2 [Rattus norvegicus]
 gi|149061299|gb|EDM11722.1| rCG47496, isoform CRA_a [Rattus norvegicus]
          Length = 305

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212


>gi|332835226|ref|XP_508090.3| PREDICTED: homeobox protein HMX3 [Pan troglodytes]
          Length = 357

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|56181390|ref|NP_001007986.1| homeobox protein HMX3 [Gallus gallus]
 gi|82070069|sp|O57601.1|HMX3_CHICK RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1; Short=cNkx5-1
 gi|2739307|emb|CAA75921.1| Nkx5-1 protein [Gallus gallus]
          Length = 308

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 204 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 247



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 214 LAASLHLTETQVKIWFQNRRNKWK 237


>gi|156544036|ref|XP_001604575.1| PREDICTED: homeobox protein B-H1-like [Nasonia vitripennis]
          Length = 221

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 97  KYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 142



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 106 DVADALSLSETQVKTWYQNRRTKWK 130


>gi|432903179|ref|XP_004077122.1| PREDICTED: homeobox protein HMX3-A-like [Oryzias latipes]
          Length = 303

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 198 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 241



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 208 LAASLHLTETQVKIWFQNRRNKWK 231


>gi|57527993|ref|NP_001009577.1| homeobox transcription factor Nk1 [Strongylocentrotus purpuratus]
 gi|42795449|gb|AAS46234.1| homeobox transcription factor Nk1 [Strongylocentrotus purpuratus]
          Length = 432

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 317 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 352



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 325 LNLALSLSLTETQVKIWFQNRRTKWK 350


>gi|332030754|gb|EGI70430.1| BarH-like 2 homeobox protein [Acromyrmex echinatior]
          Length = 196

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 36/48 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
             KYLSV+ R +++  L+L+E Q+KTW+QNRRTKWK+Q   +L+ + H
Sbjct: 76  CQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQLRLEQLRH 123



 Score = 41.6 bits (96), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +++  L+L+E Q+KTW+QNRRTKWK
Sbjct: 87  DVADALSLSETQVKTWYQNRRTKWK 111


>gi|577787|emb|CAA58044.1| transcription factor [Notophthalmus viridescens]
          Length = 113

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 7/79 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR--PT-GFYF 83
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A     PT G  F
Sbjct: 11  QYLSIAERAEFSGSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMMPPTFGLSF 70

Query: 84  PGGGPLIFGAQHGSPTAPY 102
           P G P+   + +G P+AP+
Sbjct: 71  PLGSPVHAASLYG-PSAPF 88


>gi|402881755|ref|XP_003904430.1| PREDICTED: NK1 transcription factor-related protein 2 [Papio
           anubis]
          Length = 309

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|355562849|gb|EHH19443.1| hypothetical protein EGK_20147, partial [Macaca mulatta]
          Length = 277

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 170 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 213



 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 180 LAASLHLTETQVKIWFQNRRNKWK 203


>gi|319429388|gb|ADV56969.1| homeodomain protein HoxD3a [Opsariichthys bidens]
          Length = 287

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 164 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 219

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 220 SPPLSGSNH 228



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 175 VEMANLLNLTERQIKIWFQNRRMKYK 200


>gi|297687559|ref|XP_002821279.1| PREDICTED: homeobox protein HMX3 [Pongo abelii]
          Length = 357

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|296221408|ref|XP_002756719.1| PREDICTED: homeobox protein HMX3 [Callithrix jacchus]
          Length = 360

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 253 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 296



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 263 LAASLHLTETQVKIWFQNRRNKWK 286


>gi|319429384|gb|ADV56967.1| homeodomain protein HoxD3a [Hypophthalmichthys nobilis]
          Length = 284

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 161 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 216

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 217 SPPLSGSNH 225



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 172 VEMANLLNLTERQIKIWFQNRRMKYK 197


>gi|195391550|ref|XP_002054423.1| GJ24446 [Drosophila virilis]
 gi|194152509|gb|EDW67943.1| GJ24446 [Drosophila virilis]
          Length = 699

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 608 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 643



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V
Sbjct: 616 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 649


>gi|405966867|gb|EKC32099.1| Homeobox protein slou [Crassostrea gigas]
          Length = 297

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 192 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 227



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 200 LNLALSLNLTETQVKIWFQNRRTKWK 225


>gi|332212002|ref|XP_003255107.1| PREDICTED: homeobox protein HMX3 [Nomascus leucogenys]
          Length = 357

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|390474322|ref|XP_002757665.2| PREDICTED: uncharacterized protein LOC100386232 [Callithrix
           jacchus]
          Length = 577

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 473 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 518



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 483 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 524


>gi|348588233|ref|XP_003479871.1| PREDICTED: homeobox protein HMX3-like [Cavia porcellus]
          Length = 357

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283


>gi|148229848|ref|NP_001079226.1| homeobox protein HMX3 [Xenopus laevis]
 gi|82243609|sp|Q8JJ64.1|HMX3_XENLA RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1; Short=X-nkx-5.1
 gi|20385194|gb|AAM21210.1|AF368235_1 Nkx-5.1 [Xenopus laevis]
 gi|213624988|gb|AAI69574.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
 gi|213627760|gb|AAI69576.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
          Length = 306

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 201 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 244



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 211 LAASLHLTETQVKIWFQNRRNKWK 234


>gi|311267488|ref|XP_003131594.1| PREDICTED: homeobox protein Hox-B2-like [Sus scrofa]
          Length = 353

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 48/104 (46%), Gaps = 22/104 (21%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q         H  P     P G
Sbjct: 161 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ-------TQHREP-----PDG 208

Query: 87  GPLIFGAQH----------GSPTAPYFFSASMLDDSQSPRDAPG 120
           GP   GA             SP  P    A+     Q P  APG
Sbjct: 209 GPACPGAPKKAGEASEEPLASPGRPSVSRAAREVCCQPPEVAPG 252



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 172 VEIAALLDLTERQVKVWFQNRRMKHK 197


>gi|301621867|ref|XP_002940264.1| PREDICTED: homeobox protein HMX1-like [Xenopus (Silurana)
           tropicalis]
          Length = 278

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ L+  
Sbjct: 170 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAA 213



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 180 LAASLHLTETQVKIWFQNRRNKWK 203


>gi|241756294|ref|XP_002406399.1| fushi tarazu, putative [Ixodes scapularis]
 gi|215506136|gb|EEC15630.1| fushi tarazu, putative [Ixodes scapularis]
          Length = 96

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 3/65 (4%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK---MVAHNRPTGFYF 83
          + ++YL+  +R+E++  L LTE QIK WFQNRR KWKK+  +KL+    + H  P   + 
Sbjct: 31 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKAKLEAGLALGHGPPELSHH 90

Query: 84 PGGGP 88
          P  GP
Sbjct: 91 PDHGP 95



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
          +E++  L LTE QIK WFQNRR KWK  +K
Sbjct: 42 IEIAHALCLTERQIKIWFQNRRMKWKKENK 71


>gi|319429378|gb|ADV56964.1| homeodomain protein HoxD3a [Mylopharyngodon piceus]
          Length = 289

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 166 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 221

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 222 SPPLSGSNH 230



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 177 VEMANLLNLTERQIKIWFQNRRMKYK 202


>gi|242009657|ref|XP_002425599.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
 gi|212509492|gb|EEB12861.1| Homeobox protein ceh-19, putative [Pediculus humanus corporis]
          Length = 239

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 36/44 (81%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           KYLSV+ R ++++ LNL+E Q+KTW+QNRRTKWK+Q   +L+ +
Sbjct: 113 KYLSVADRSDVAEALNLSETQVKTWYQNRRTKWKRQNQLRLEQL 156



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 23/25 (92%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++ LNL+E Q+KTW+QNRRTKWK
Sbjct: 122 DVAEALNLSETQVKTWYQNRRTKWK 146


>gi|126290884|ref|XP_001370688.1| PREDICTED: homeobox protein MSX-2-like [Monodelphis domestica]
          Length = 268

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 166 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 225

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 226 PINSPLQAASLYGT 239



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 175 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 203


>gi|156546102|ref|XP_001601511.1| PREDICTED: hypothetical protein LOC100117203 [Nasonia vitripennis]
          Length = 577

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 421 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 456



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 429 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 463


>gi|322366526|gb|ADW95337.1| NK1 [Paracentrotus lividus]
          Length = 433

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 318 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 353



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 326 LNLALSLSLTETQVKIWFQNRRTKWK 351


>gi|149061300|gb|EDM11723.1| rCG47496, isoform CRA_b [Rattus norvegicus]
          Length = 284

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 158 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 193



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 166 LNLALSLSLTETQVKIWFQNRRTKWK 191


>gi|126273319|ref|XP_001376242.1| PREDICTED: homeobox protein HMX3-like [Monodelphis domestica]
          Length = 358

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 253 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 296



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 263 LAASLHLTETQVKIWFQNRRNKWK 286


>gi|47086377|ref|NP_997995.1| NK1 transcription factor-related protein 2 [Danio rerio]
 gi|27530695|dbj|BAC54032.1| homeobox protein Sax1 [Danio rerio]
          Length = 258

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 16/88 (18%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ---LASKLKMVAHNRP-------- 78
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ   + S L+   ++ P        
Sbjct: 164 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGVESSLQAGTNSLPNISPSCGS 223

Query: 79  -TGFYFP-GGGPLIFGAQHGSPTAPYFF 104
            +G + P   G +IF   H  P A   F
Sbjct: 224 ASGLHPPFSTGNMIF---HSGPGASGIF 248



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLT 47
           + L+  L+LTE Q+K WFQNRRTKWK  +  +  S +   + L N++
Sbjct: 172 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGVESSLQAGTNSLPNIS 218


>gi|319429392|gb|ADV56971.1| homeodomain protein HoxD3a [Luciobrama macrocephalus]
          Length = 286

 Score = 57.8 bits (138), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 163 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 218

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 219 SPPLSGSNH 227



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 174 VEMANLLNLTERQIKIWFQNRRMKYK 199


>gi|351711623|gb|EHB14542.1| NK1 transcription factor-related protein 2 [Heterocephalus glaber]
          Length = 312

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|332835312|ref|XP_521630.3| PREDICTED: NK1 transcription factor-related protein 2 [Pan
           troglodytes]
          Length = 310

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|113204951|gb|ABI34209.1| RT01040p [Drosophila melanogaster]
 gi|113205015|gb|ABI34241.1| RT01140p [Drosophila melanogaster]
          Length = 263

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 160 LKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 203



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 172 LAASLRLTETQVKIWFQNRRNKWK 195


>gi|319740948|gb|ADV68994.1| Nk1 homeobox [Patiria miniata]
          Length = 108

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 12/89 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP-------TGFY 82
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ          N P        G +
Sbjct: 2   RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDPNAPTNNPQSPPPHHVGLH 61

Query: 83  FPGGGPLIFGAQ----HGSPTA-PYFFSA 106
                 L++G+Q    HG+  A PY  S+
Sbjct: 62  TTYNSGLMYGSQLPYLHGAAGAMPYLVSS 90



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 10 LNLALSLSLTETQVKIWFQNRRTKWK 35


>gi|308220068|gb|ADO22606.1| ANTP class homeobox transcription factor ANTP71 [Mnemiopsis leidyi]
          Length = 225

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 6/52 (11%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGF 81
           KYLSV +R++++  L L+E Q+KTWFQNRR KWKKQ+      +   RPTG 
Sbjct: 126 KYLSVPERLDIATGLGLSETQVKTWFQNRRMKWKKQV------LEEERPTGL 171



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++++  L L+E Q+KTWFQNRR KWK
Sbjct: 134 LDIATGLGLSETQVKTWFQNRRMKWK 159


>gi|319429380|gb|ADV56965.1| homeodomain protein HoxD3a [Ctenopharyngodon idella]
          Length = 288

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 165 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 220

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 221 SPPLSGSNH 229



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 176 VEMANLLNLTERQIKIWFQNRRMKYK 201


>gi|297687579|ref|XP_002821289.1| PREDICTED: NK1 transcription factor-related protein 2 [Pongo
           abelii]
          Length = 310

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|225543572|ref|NP_571200.1| homeobox protein Hox-D3a [Danio rerio]
 gi|223590219|sp|O42370.2|HXD3A_DANRE RecName: Full=Homeobox protein Hox-D3a; Short=Hox-D3
          Length = 396

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M   + P G + P  
Sbjct: 181 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 236

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 237 SPPLSGSNH 245



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 192 VEMANLLNLTERQIKIWFQNRRMKYK 217


>gi|109090873|ref|XP_001083181.1| PREDICTED: NK1 transcription factor-related protein 2 [Macaca
           mulatta]
          Length = 309

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|410901024|ref|XP_003963996.1| PREDICTED: homeobox protein HMX3-A-like [Takifugu rubripes]
          Length = 301

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 196 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 239



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 206 LAASLHLTETQVKIWFQNRRNKWK 229


>gi|269931713|gb|ACZ54376.1| homeobox D3 [Monodelphis domestica]
          Length = 157

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 64  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PVG-QSPER 119

Query: 87  GPLIFGAQH 95
            P + GA H
Sbjct: 120 SPPLSGANH 128



 Score = 43.1 bits (100), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 75  VEMANLLNLTERQIKIWFQNRRMKYK 100


>gi|195055979|ref|XP_001994890.1| GH13609 [Drosophila grimshawi]
 gi|193892653|gb|EDV91519.1| GH13609 [Drosophila grimshawi]
          Length = 719

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 629 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 664



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 637 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 671


>gi|118403499|ref|NP_001072829.1| homeobox protein HMX3 [Xenopus (Silurana) tropicalis]
 gi|123908806|sp|Q0P4W6.1|HMX3_XENTR RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|112418486|gb|AAI21875.1| H6 family homeobox 3 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 201 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 244



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 211 LAASLHLTETQVKIWFQNRRNKWK 234


>gi|449273536|gb|EMC83030.1| Homeobox protein MSX-1, partial [Columba livia]
          Length = 168

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 11/81 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P       G
Sbjct: 74  QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 131

Query: 81  FYFPGGGPLIFGAQHGSPTAP 101
             FP GGP + G       AP
Sbjct: 132 ISFPLGGPAVAGGSLYGAVAP 152


>gi|123309|sp|P23410.1|MSX2_COTJA RecName: Full=Homeobox protein MSX-2; AltName: Full=MSX-1; AltName:
           Full=QUOX-7
 gi|213620|gb|AAA63459.1| homeobox protein [Coturnix coturnix]
          Length = 259

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A+   P+GF   F
Sbjct: 157 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAANAMLPSGFSLPF 216

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +G+
Sbjct: 217 PINSPIQAASLYGT 230



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL       + + F
Sbjct: 166 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAANAMLPSGF 212


>gi|403259322|ref|XP_003922166.1| PREDICTED: NK1 transcription factor-related protein 2 [Saimiri
           boliviensis boliviensis]
          Length = 309

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 185 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 220



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 193 LNLALSLSLTETQVKIWFQNRRTKWK 218


>gi|194745256|ref|XP_001955104.1| GF16414 [Drosophila ananassae]
 gi|190628141|gb|EDV43665.1| GF16414 [Drosophila ananassae]
          Length = 667

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS-KLKMVAHNRPTGFYFPGGGP 88
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ     +       PTG  F   GP
Sbjct: 576 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTIPPPTGGSF---GP 632

Query: 89  LIFGAQ----HGSPTAPY 102
             + +     H  P  PY
Sbjct: 633 GAYASSLLYPHAVPYPPY 650



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 584 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 618


>gi|410976267|ref|XP_003994544.1| PREDICTED: homeobox protein HMX3 [Felis catus]
          Length = 242

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 135 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 178



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 145 LAASLHLTETQVKIWFQNRRNKWK 168


>gi|339238113|ref|XP_003380611.1| homeobox protein ceh-30 [Trichinella spiralis]
 gi|316976460|gb|EFV59753.1| homeobox protein ceh-30 [Trichinella spiralis]
          Length = 220

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 36/46 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYLSV  R++L+K L L++ Q+KTW+QNRRTKWK+Q +  L +++ 
Sbjct: 87  KYLSVQDRLDLAKQLKLSDTQVKTWYQNRRTKWKRQSSVGLDLLSE 132



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 35/50 (70%), Gaps = 4/50 (8%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50
           ++L+K L L++ Q+KTW+QNRRTKWK   +  SV   + LS++ N+  VQ
Sbjct: 95  LDLAKQLKLSDTQVKTWYQNRRTKWK---RQSSVGLDL-LSEIDNMAAVQ 140


>gi|226437602|ref|NP_001139812.1| NK1 transcription factor-related protein 2 [Homo sapiens]
 gi|338817978|sp|Q9UD57.3|NKX12_HUMAN RecName: Full=NK1 transcription factor-related protein 2; AltName:
           Full=Homeobox protein SAX-1; AltName: Full=NKX-1.1
 gi|119569655|gb|EAW49270.1| hCG1647663 [Homo sapiens]
          Length = 310

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.7 bits (99), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|357603885|gb|EHJ63961.1| nk homeobox protein [Danaus plexippus]
          Length = 165

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 14/86 (16%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS-KLKMVAHNRPTGFYFPGG-- 86
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ     +       P    FP G  
Sbjct: 63  RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTVPPPPAGAFPSGAY 122

Query: 87  -GPLIFGAQHG--------SPTAPYF 103
            G L++   HG         P APYF
Sbjct: 123 PGGLLY--SHGVPYPFTGPGPYAPYF 146



 Score = 42.0 bits (97), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 71  LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 105


>gi|363735406|ref|XP_003641551.1| PREDICTED: homeobox protein SAX-1-like [Gallus gallus]
          Length = 169

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 56 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 93



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 66 LNLALSLSLTETQVKIWFQNRRTKWK 91


>gi|291242516|ref|XP_002741152.1| PREDICTED: transcription factor Lox2-like [Saccoglossus
           kowalevskii]
          Length = 321

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR K+KK+
Sbjct: 156 ENKRTRTAYTRSQLLELEKEFHFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKYKKE 215

Query: 66  LASKLKMVAHNRPTG 80
            A +        PTG
Sbjct: 216 EAKRKPSSGSESPTG 230



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR K+K
Sbjct: 188 IELAAMLNLTERHIKIWFQNRRMKYK 213


>gi|18858815|ref|NP_571709.1| homeobox protein HMX3 [Danio rerio]
 gi|10444257|gb|AAG17822.1|AF288211_1 Nkx5-1 [Danio rerio]
          Length = 297

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 193 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 236



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 203 LAASLHLTETQVKIWFQNRRNKWK 226


>gi|426238974|ref|XP_004013411.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-B3 [Ovis
           aries]
          Length = 327

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 21/94 (22%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP-- 84
           + ++YL   +R+E++ LLNL+E QIK WFQNRR KWKK   SK+K +   R TG   P  
Sbjct: 210 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKWKKD--SKMKNILGAR-TGAGAPVP 266

Query: 85  ----------------GGGPLIFGAQHGSPTAPY 102
                            G P +  +QH  P  P+
Sbjct: 267 HLRQKLFPPSSGNLDYNGAPPMAPSQHHGPCDPH 300



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           +E++ LLNL+E QIK WFQNRR KWK   K  ++
Sbjct: 221 VEMANLLNLSERQIKIWFQNRRMKWKKDSKMKNI 254


>gi|6677853|ref|NP_033149.1| NK1 transcription factor-related protein 2 [Mus musculus]
 gi|1170291|sp|P42580.1|NKX12_MOUSE RecName: Full=NK1 transcription factor-related protein 2; AltName:
           Full=Homeobox protein SAX-1; AltName: Full=NKX-1.1
 gi|7248794|gb|AAF43671.1|AF222444_1 homeodomain protein [Mus musculus]
 gi|453172|emb|CAA53153.1| Sax-1 [Mus musculus]
 gi|7248791|gb|AAF43669.1| homeobox protein [Mus musculus]
 gi|141796983|gb|AAI39758.1| NK1 transcription factor related, locus 2 (Drosophila) [Mus
           musculus]
 gi|148685786|gb|EDL17733.1| NK1 transcription factor related, locus 2 (Drosophila), isoform
           CRA_b [Mus musculus]
          Length = 305

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212


>gi|403260089|ref|XP_003922520.1| PREDICTED: homeobox protein HMX3, partial [Saimiri boliviensis
           boliviensis]
          Length = 265

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 159 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 202



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 169 LAASLHLTETQVKIWFQNRRNKWK 192


>gi|391345554|ref|XP_003747050.1| PREDICTED: homeobox protein Nkx-6.3-like [Metaseiulus occidentalis]
          Length = 195

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 7/70 (10%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV-AHNRPTGFYFPGGGP 88
           KYL+  +R +L+  L ++E Q+K WFQNRRTKW+K+ A+++  V  H+RPT    PG   
Sbjct: 99  KYLAGPERAKLAYALGMSESQVKVWFQNRRTKWRKKHAAEMATVKQHSRPT----PGSAT 154

Query: 89  LIFGAQ--HG 96
            + GA   HG
Sbjct: 155 PVTGASNAHG 164



 Score = 38.1 bits (87), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           +L+  L ++E Q+K WFQNRRTKW+
Sbjct: 108 KLAYALGMSESQVKVWFQNRRTKWR 132


>gi|195497398|ref|XP_002096082.1| GE25478 [Drosophila yakuba]
 gi|194182183|gb|EDW95794.1| GE25478 [Drosophila yakuba]
          Length = 262

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 159 LKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 202



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 171 LAASLRLTETQVKIWFQNRRNKWK 194


>gi|344296031|ref|XP_003419713.1| PREDICTED: homeobox protein HMX3-like [Loxodonta africana]
          Length = 282

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 175 MKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 218



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 187 LAASLHLTETQVKIWFQNRRNKWK 210


>gi|3005960|emb|CAA76300.1| NK [Lineus sanguineus]
          Length = 106

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 37 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 72



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
          + L+  LNLTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 45 LNLALSLNLTETQVKIWFQNRRTKWKKQNPGLDVN 79


>gi|82228888|sp|Q504H8.1|HMX3_DANRE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|63102121|gb|AAH95015.1| Homeo box (H6 family) 3 [Danio rerio]
 gi|182891290|gb|AAI64241.1| Hmx3 protein [Danio rerio]
          Length = 297

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 193 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 236



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 203 LAASLHLTETQVKIWFQNRRNKWK 226


>gi|431908252|gb|ELK11852.1| Homeobox protein HMX3 [Pteropus alecto]
          Length = 301

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 194 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 237



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 204 LAASLHLTETQVKIWFQNRRNKWK 227


>gi|348501548|ref|XP_003438331.1| PREDICTED: homeobox protein HMX3-A-like [Oreochromis niloticus]
          Length = 303

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 198 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 241



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 208 LAASLHLTETQVKIWFQNRRNKWK 231


>gi|157987313|gb|ABW07818.1| homeobox transcription factor [Danio rerio]
          Length = 297

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 193 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 236



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 203 LAASLHLTETQVKIWFQNRRNKWK 226


>gi|393905278|gb|EJD73918.1| hypothetical protein LOAG_18696 [Loa loa]
          Length = 223

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
          KYLSV  RM+L++ + L++ Q+KTW+QNRRTKWK+Q A  + ++
Sbjct: 34 KYLSVQDRMDLAQRMGLSDTQVKTWYQNRRTKWKRQAAVGMDLL 77



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 15/26 (57%), Positives = 23/26 (88%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          M+L++ + L++ Q+KTW+QNRRTKWK
Sbjct: 42 MDLAQRMGLSDTQVKTWYQNRRTKWK 67


>gi|347963914|ref|XP_310608.5| AGAP000484-PA [Anopheles gambiae str. PEST]
 gi|333466976|gb|EAA06450.5| AGAP000484-PA [Anopheles gambiae str. PEST]
          Length = 688

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ---LASKLKMVAHNRPTGFYFPGG 86
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ   +      V      G + PG 
Sbjct: 596 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVNSPTVPPPNSGGSFGPGS 655

Query: 87  GPLIFGAQHGSPTAPY 102
                   H  P  PY
Sbjct: 656 YASSLLYPHAMPYPPY 671



 Score = 42.4 bits (98), Expect = 0.040,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 604 LNLALSLSLTETQVKIWFQNRRTKWK 629


>gi|301614677|ref|XP_002936812.1| PREDICTED: hypothetical protein LOC100493120 [Xenopus (Silurana)
           tropicalis]
          Length = 408

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 280 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 315



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 288 LNLALSLSLTETQVKIWFQNRRTKWK 313


>gi|195453296|ref|XP_002073726.1| GK14259 [Drosophila willistoni]
 gi|194169811|gb|EDW84712.1| GK14259 [Drosophila willistoni]
          Length = 686

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 595 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 630



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 603 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 637


>gi|82245462|sp|Q90XP0.1|HMX3A_ORYLA RecName: Full=Homeobox protein HMX3-A; AltName: Full=Homeobox
           protein H6 family member 3-A; AltName: Full=Homeobox
           protein Nkx-5.1.1; AltName: Full=OlNkx-5.1.1
 gi|15637259|gb|AAL04484.1|AF365970_1 transcription factor Nkx5-1.1 [Oryzias latipes]
          Length = 303

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 198 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 241



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 208 LAASLHLTETQVKIWFQNRRNKWK 231


>gi|301616795|ref|XP_002937845.1| PREDICTED: retinal homeobox protein Rx-like [Xenopus (Silurana)
           tropicalis]
          Length = 246

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 122 SRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQ 158



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 45/118 (38%), Gaps = 21/118 (17%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
           + L+  L+LTE Q+K WFQNRRTKWK      S+  R                  QN  T
Sbjct: 131 LSLALTLHLTETQVKIWFQNRRTKWKKQQPIGSLEGR--------------GCSIQNCPT 176

Query: 61  KWKKQLASKLKMVAHNRPTGFYFPGGGPLIFGAQHGSPTAPYFFSASMLDDSQSPRDA 118
               +    L     N P   + P  G    GA H SP    FFS        SP  A
Sbjct: 177 IPGPRFTPPLP----NYPCATHIPHIG---AGANHLSPFPGIFFSPPSTSFGLSPTGA 227


>gi|118601824|ref|NP_001073082.1| homeobox protein MSX-2 [Bos taurus]
 gi|122145323|sp|Q0P5C3.1|MSX2_BOVIN RecName: Full=Homeobox protein MSX-2
 gi|112362120|gb|AAI20249.1| Msh homeobox 2 [Bos taurus]
 gi|296475929|tpg|DAA18044.1| TPA: homeobox protein MSX-2 [Bos taurus]
 gi|440902722|gb|ELR53477.1| Homeobox protein MSX-2 [Bos grunniens mutus]
          Length = 267

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 225 PINSPLQAASLYGA 238



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|348533708|ref|XP_003454347.1| PREDICTED: hypothetical protein LOC100692103 [Oreochromis
           niloticus]
          Length = 422

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 293 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 328



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 301 LNLALSLSLTETQVKIWFQNRRTKWK 326


>gi|157103664|ref|XP_001648076.1| nk homeobox protein [Aedes aegypti]
 gi|108869377|gb|EAT33602.1| AAEL014125-PA [Aedes aegypti]
          Length = 303

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 200 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 241



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 210 LAASLRLTETQVKIWFQNRRNKWK 233


>gi|444706676|gb|ELW48002.1| Homeobox protein MSX-2 [Tupaia chinensis]
          Length = 267

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPLLPSGFSLPF 224

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 225 PINSPLQAASLYGA 238



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|344265289|ref|XP_003404717.1| PREDICTED: homeobox protein MSX-2-like [Loxodonta africana]
          Length = 267

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 225 PINSPLQAASLYGA 238



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|348519657|ref|XP_003447346.1| PREDICTED: homeobox protein Hox-D3 [Oreochromis niloticus]
          Length = 399

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 184 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 239

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 240 SPPLSGPNH 248



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 195 VEMANLLNLTERQIKIWFQNRRMKYK 220


>gi|444729278|gb|ELW69703.1| Homeobox protein HMX3 [Tupaia chinensis]
          Length = 333

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 226 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 269



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLHLTETQVKIWFQNRRNKWK 259


>gi|405971668|gb|EKC36493.1| Homeobox protein HMX3-B [Crassostrea gigas]
          Length = 316

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 212 RYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAA 255



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 222 LAASLQLTETQVKIWFQNRRNKWK 245


>gi|348574983|ref|XP_003473269.1| PREDICTED: homeobox protein MSX-2-like [Cavia porcellus]
          Length = 267

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224

Query: 84  PGGGPLIFGAQHGS 97
           P   PL   + +G+
Sbjct: 225 PINSPLQAASIYGT 238



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|5081328|gb|AAD39348.1| hox6 protein [Nematostella vectensis]
          Length = 269

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPT 79
           +  KYL+ ++R+E++  L LTE+QIK WFQNRR KWK +    L+  A+  PT
Sbjct: 178 HFSKYLTRTRRIEIATTLKLTEMQIKIWFQNRRMKWKGEFKDSLQKPANGEPT 230



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++  L LTE+QIK WFQNRR KWK
Sbjct: 189 IEIATTLKLTEMQIKIWFQNRRMKWK 214


>gi|77627746|ref|NP_999815.2| homeobox protein Splox [Strongylocentrotus purpuratus]
 gi|77543296|gb|AAN17337.2| homeobox protein Splox [Strongylocentrotus purpuratus]
          Length = 390

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 13/64 (20%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 214 ENKRTRTAYTRGQLLELEKEFHFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKE 273

Query: 66  LASK 69
            A +
Sbjct: 274 EAKR 277



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 246 IELAAMLNLTERHIKIWFQNRRMKWK 271


>gi|383860050|ref|XP_003705504.1| PREDICTED: uncharacterized protein LOC100880612 [Megachile
           rotundata]
          Length = 563

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 411 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 446



 Score = 43.1 bits (100), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 419 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 453


>gi|348552206|ref|XP_003461919.1| PREDICTED: homeobox protein HMX1-like [Cavia porcellus]
          Length = 372

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 249 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 299



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 261 LAASLQLTETQVKIWFQNRRNKWK 284


>gi|3150080|emb|CAA06645.1| hox3 [Cupiennius salei]
          Length = 576

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 51/94 (54%), Gaps = 11/94 (11%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR-----PTGF 81
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK+  SK   +  +      P G 
Sbjct: 230 HFNRYLCRPRRIEMANLLNLSERQIKIWFQNRRMKYKKEQKSKGLYIQQSEKELSSPVGS 289

Query: 82  YFPGGGPLIFGAQHGSPTAPYFFSASMLDDSQSP 115
              G  PL       SPT+P   S+  +  S +P
Sbjct: 290 -MAGSSPLA-----SSPTSPTITSSCNMASSGAP 317



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 241 IEMANLLNLSERQIKIWFQNRRMKYK 266


>gi|330864806|ref|NP_001179087.1| T-cell leukemia homeobox protein 2 [Bos taurus]
 gi|296482771|tpg|DAA24886.1| TPA: T-cell leukemia homeobox 2-like [Bos taurus]
 gi|440896446|gb|ELR48365.1| T-cell leukemia homeobox protein 2 [Bos grunniens mutus]
          Length = 284

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|223635191|sp|A8DT10.1|HXD3_HAPBU RecName: Full=Homeobox protein Hox-D3
 gi|154183858|gb|ABS70796.1| Hoxd3a [Haplochromis burtoni]
          Length = 404

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 189 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 244

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 245 SPPLSGPNH 253



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 200 VEMANLLNLTERQIKIWFQNRRMKYK 225


>gi|147899416|ref|NP_001083795.1| NK1 homeobox 2 [Xenopus laevis]
 gi|30962578|dbj|BAC76752.1| NK-1 related homeobox protein Nbx [Xenopus laevis]
          Length = 255

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 132 RYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQ 167



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 140 LSLALTLHLTETQVKIWFQNRRTKWK 165


>gi|431920376|gb|ELK18408.1| T-cell leukemia homeobox protein 2 [Pteropus alecto]
          Length = 284

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|7248802|gb|AAF43675.1|AF223363_1 homeodomain protein Nkx-1.2T5.1 [Mus musculus]
          Length = 179

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
             +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 142 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 179



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 152 LNLALSLSLTETQVKIWFQNRRTKWK 177


>gi|426223981|ref|XP_004006152.1| PREDICTED: T-cell leukemia homeobox protein 2 [Ovis aries]
          Length = 284

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|322790723|gb|EFZ15467.1| hypothetical protein SINV_04888 [Solenopsis invicta]
          Length = 410

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 234 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 275



 Score = 39.7 bits (91), Expect = 0.21,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 244 LAASLRLTETQVKIWFQNRRNKWK 267


>gi|311252341|ref|XP_003125043.1| PREDICTED: T-cell leukemia homeobox protein 2-like [Sus scrofa]
          Length = 284

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|291411843|ref|XP_002722191.1| PREDICTED: NK1 homeobox 2-like [Oryctolagus cuniculus]
          Length = 304

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212


>gi|62958699|gb|AAY23665.1| Hox protein [Oreochromis niloticus]
          Length = 247

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
          + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 32 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 87

Query: 87 GPLIFGAQH 95
           P + G  H
Sbjct: 88 SPPLSGPNH 96



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 43 VEMANLLNLTERQIKIWFQNRRMKYK 68


>gi|301612427|ref|XP_002935734.1| PREDICTED: homeobox protein Hox-D3 [Xenopus (Silurana) tropicalis]
          Length = 415

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 200 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PAG-QSPDR 255

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 256 SPTLSGSNH 264



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 211 VEMANLLNLTERQIKIWFQNRRMKYK 236


>gi|213623530|gb|AAI69870.1| NK-1 related homeobox protein Nbx [Xenopus laevis]
          Length = 255

 Score = 57.4 bits (137), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 131 SRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQ 167



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 140 LSLALTLHLTETQVKIWFQNRRTKWK 165


>gi|1170310|sp|P19601.2|SAX1_CHICK RecName: Full=Homeobox protein SAX-1; AltName: Full=CHOX-3
          Length = 232

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
             +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 86  ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 123



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 96  LNLALSLSLTETQVKIWFQNRRTKWK 121


>gi|410896780|ref|XP_003961877.1| PREDICTED: homeobox protein Hox-D3a-like [Takifugu rubripes]
          Length = 393

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 180 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 235

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 236 SPPLSGPNH 244



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 191 VEMANLLNLTERQIKIWFQNRRMKYK 216


>gi|8650523|gb|AAF78248.1|AF275310_1 Hox5 [Haliotis rufescens]
          Length = 281

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           + +KYL+  +R+E++  LNLTE QIK WFQNRR KWKK+   KL  +A N
Sbjct: 216 HYNKYLTRRRRIEIAHALNLTERQIKIWFQNRRMKWKKE--HKLSHIAKN 263



 Score = 50.8 bits (120), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           +E++  LNLTE QIK WFQNRR KWK   K   ++K M L+  L
Sbjct: 227 IEIAHALNLTERQIKIWFQNRRMKWKKEHKLSHIAKNMNLANAL 270


>gi|6678367|ref|NP_033418.1| T-cell leukemia homeobox protein 2 [Mus musculus]
 gi|6016286|sp|Q61663.1|TLX2_MOUSE RecName: Full=T-cell leukemia homeobox protein 2; AltName:
           Full=Enteric neuron homeobox protein; AltName:
           Full=Homeobox TLX-2; AltName: Full=Homeobox protein
           Hox-11L1; AltName: Full=Hox11L.1; AltName: Full=PMUR10F
 gi|193844|gb|AAA37805.1| homeobox protein [Mus musculus]
 gi|148666639|gb|EDK99055.1| T-cell leukemia, homeobox 2, isoform CRA_b [Mus musculus]
 gi|187950979|gb|AAI38242.1| T-cell leukemia, homeobox 2 [Mus musculus]
 gi|187951899|gb|AAI38241.1| T-cell leukemia, homeobox 2 [Mus musculus]
          Length = 284

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|397490725|ref|XP_003816344.1| PREDICTED: LOW QUALITY PROTEIN: NK1 transcription factor-related
           protein 2 [Pan paniscus]
          Length = 311

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 187 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 222



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 195 LNLALSLSLTETQVKIWFQNRRTKWK 220


>gi|341882187|gb|EGT38122.1| hypothetical protein CAEBREN_20043 [Caenorhabditis brenneri]
          Length = 159

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           KYLS S R EL+  L++TE Q+K WFQNRRTKWKK  + K +M   + P
Sbjct: 103 KYLSSSDRSELANRLDVTETQVKIWFQNRRTKWKKIESEKERMELEDIP 151



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL 43
           EL+  L++TE Q+K WFQNRRTKWK ++   S  +RMEL  +
Sbjct: 112 ELANRLDVTETQVKIWFQNRRTKWKKIE---SEKERMELEDI 150


>gi|432933123|ref|XP_004081816.1| PREDICTED: homeobox protein Hox-D3-like [Oryzias latipes]
          Length = 399

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 184 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 239

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 240 SPPLSGPNH 248



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 195 VEMANLLNLTERQIKIWFQNRRMKYK 220


>gi|283464199|gb|ADB22683.1| msh homeobox 2 [Capra hircus]
          Length = 99

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
          +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 4  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 63

Query: 84 PGGGPLIFGAQHGS 97
          P   PL   + +G+
Sbjct: 64 PINSPLQAASLYGA 77



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
          E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 13 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 41


>gi|194899444|ref|XP_001979269.1| GG14462 [Drosophila erecta]
 gi|190650972|gb|EDV48227.1| GG14462 [Drosophila erecta]
          Length = 663

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 572 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 607



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V
Sbjct: 580 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 613


>gi|395543194|ref|XP_003773505.1| PREDICTED: T-cell leukemia homeobox protein 2 [Sarcophilus
           harrisii]
          Length = 286

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 182 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 227



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 192 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 233


>gi|341880614|gb|EGT36549.1| CBN-CEH-9 protein [Caenorhabditis brenneri]
          Length = 155

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           KYLS S R EL+  L++TE Q+K WFQNRRTKWKK  + K +M   + P
Sbjct: 99  KYLSSSDRSELANRLDVTETQVKIWFQNRRTKWKKIESEKERMELEDIP 147



 Score = 47.8 bits (112), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL 43
           EL+  L++TE Q+K WFQNRRTKWK ++   S  +RMEL  +
Sbjct: 108 ELANRLDVTETQVKIWFQNRRTKWKKIE---SEKERMELEDI 146


>gi|195498556|ref|XP_002096574.1| GE24972 [Drosophila yakuba]
 gi|194182675|gb|EDW96286.1| GE24972 [Drosophila yakuba]
          Length = 667

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 576 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 611



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV 34
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V
Sbjct: 584 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDV 617


>gi|565628|emb|CAA57791.1| Msx-1 [Notophthalmus viridescens]
 gi|1095176|prf||2107332A Msx-1 gene
          Length = 280

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 7/83 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN--RPT-GFYF 83
           +YLS+++R E S  L+ TE Q+K WFQNRR K K+ Q A   KLKM A     PT G  F
Sbjct: 178 QYLSIAERAEFSGSLSFTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMMPPTFGLSF 237

Query: 84  PGGGPLIFGAQHGSPTAPYFFSA 106
           P G P+   + +G P+AP+  S+
Sbjct: 238 PLGSPVHAASLYG-PSAPFHRSS 259


>gi|123917996|sp|Q3V5Z9.1|HXD3_ORYLA RecName: Full=Homeobox protein Hox-D3
 gi|74267577|dbj|BAE44287.1| hoxD3a [Oryzias latipes]
 gi|83016980|dbj|BAE53501.1| hoxD3a [Oryzias latipes]
          Length = 395

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 180 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 235

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 236 SPPLSGPNH 244



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 191 VEMANLLNLTERQIKIWFQNRRMKYK 216


>gi|363733632|ref|XP_001234892.2| PREDICTED: uncharacterized protein LOC771636 [Gallus gallus]
          Length = 368

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 237 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 272



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 245 LNLALSLSLTETQVKIWFQNRRTKWK 270


>gi|29468144|gb|AAO85417.1|AF439973_1 homeodomain transcription factor Xlox [Archaster typicus]
          Length = 228

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 20/75 (26%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 86  ENKRTRTAYTRGQLLELEKEFHFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKE 145

Query: 66  LASKLKMVAHNRPTG 80
            A +       RP+G
Sbjct: 146 EAKR-------RPSG 153



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 118 IELAAMLNLTERHIKIWFQNRRMKWK 143


>gi|297491062|ref|XP_002707835.1| PREDICTED: LOW QUALITY PROTEIN: NK1 transcription factor-related
           protein 2 [Bos taurus]
 gi|296472559|tpg|DAA14674.1| TPA: NK1 homeobox 2-like [Bos taurus]
          Length = 301

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 181 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 216



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 189 LNLALSLSLTETQVKIWFQNRRTKWK 214


>gi|195453290|ref|XP_002073723.1| GK18982 [Drosophila willistoni]
 gi|194169808|gb|EDW84709.1| GK18982 [Drosophila willistoni]
          Length = 233

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 33/42 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 130 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 171



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 140 LAASLRLTETQVKIWFQNRRNKWK 163


>gi|353231831|emb|CCD79186.1| putative nk homeobox protein [Schistosoma mansoni]
          Length = 514

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 195 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 230



 Score = 42.4 bits (98), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 203 LNLALSLNLTETQVKIWFQNRRTKWK 228


>gi|344293078|ref|XP_003418251.1| PREDICTED: brain-specific homeobox protein homolog [Loxodonta
           africana]
          Length = 232

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 3/81 (3%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL-ASKLKMVAHNRPTGFYFPGG 86
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL  S+ +  A +RP        
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDRPESPESSPR 190

Query: 87  GPLIFGAQH--GSPTAPYFFS 105
           GP    A+   G P  P+  +
Sbjct: 191 GPEAASAEARPGLPAGPFMLT 211



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|256075804|ref|XP_002574206.1| nk homeobox protein [Schistosoma mansoni]
          Length = 514

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 195 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 230



 Score = 42.4 bits (98), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 203 LNLALSLNLTETQVKIWFQNRRTKWK 228


>gi|126332298|ref|XP_001376731.1| PREDICTED: t-cell leukemia homeobox protein 2-like [Monodelphis
           domestica]
          Length = 286

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 182 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 227



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 192 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 233


>gi|126326353|ref|XP_001368627.1| PREDICTED: homeobox protein Hox-D3 [Monodelphis domestica]
          Length = 431

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 216 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PVG-QSPER 271

Query: 87  GPLIFGAQH 95
            P + GA H
Sbjct: 272 SPPLSGANH 280



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 227 VEMANLLNLTERQIKIWFQNRRMKYK 252


>gi|119370798|sp|Q1KKS7.1|HXD3A_FUGRU RecName: Full=Homeobox protein Hox-D3a
 gi|94482852|gb|ABF22467.1| homeobox protein HoxD3a [Takifugu rubripes]
          Length = 408

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K +AH+ P G + P  
Sbjct: 195 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 250

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 251 SPPLSGPNH 259



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 206 VEMANLLNLTERQIKIWFQNRRMKYK 231


>gi|350427063|ref|XP_003494640.1| PREDICTED: hypothetical protein LOC100744713 [Bombus impatiens]
          Length = 576

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 424 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 459



 Score = 43.1 bits (100), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 432 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 466


>gi|358419257|ref|XP_875408.4| PREDICTED: NK1 transcription factor-related protein 2 [Bos taurus]
          Length = 301

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 181 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 216



 Score = 42.4 bits (98), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 189 LNLALSLSLTETQVKIWFQNRRTKWK 214


>gi|395519809|ref|XP_003764034.1| PREDICTED: homeobox protein Hox-D3 [Sarcophilus harrisii]
          Length = 430

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 215 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PVG-QSPER 270

Query: 87  GPLIFGAQH 95
            P + GA H
Sbjct: 271 SPPLSGANH 279



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 226 VEMANLLNLTERQIKIWFQNRRMKYK 251


>gi|386783933|gb|AFJ24861.1| hmx-1 [Schmidtea mediterranea]
          Length = 262

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QL+++L++ 
Sbjct: 123 RYLSSSERSSLAHALQLTETQVKIWFQNRRNKWKRQLSAELEVA 166



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           L+  L LTE Q+K WFQNRR KWK       +S  +E++ + ++    I+  F
Sbjct: 133 LAHALQLTETQVKIWFQNRRNKWKR-----QLSAELEVANISSMNSSGIQAQF 180


>gi|213511470|ref|NP_001135142.1| homeobox protein HoxD3ab [Salmo salar]
 gi|157816031|gb|ABV82034.1| homeobox protein HoxD3ab [Salmo salar]
          Length = 399

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G + P  
Sbjct: 187 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PIG-HSPDR 242

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 243 SPPLSGPNH 251



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 198 VEMANLLNLTERQIKIWFQNRRMKYK 223


>gi|213513003|ref|NP_001133026.1| homeobox protein HoxD3aa [Salmo salar]
 gi|157816017|gb|ABV82027.1| homeobox protein HoxD3aa [Salmo salar]
 gi|158702369|gb|ABW77556.1| homeobox protein HoxD3aa [Salmo salar]
          Length = 397

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G + P  
Sbjct: 185 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PIG-HSPDR 240

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 241 SPPLSGPNH 249



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 196 VEMANLLNLTERQIKIWFQNRRMKYK 221


>gi|343168815|gb|AEL96784.1| RT11964p1 [Drosophila melanogaster]
          Length = 659

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 568 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 603



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 576 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 610


>gi|359754117|gb|AEV59537.1| HOXD3 [Macropus eugenii]
          Length = 429

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PVG-QSPER 269

Query: 87  GPLIFGAQH 95
            P + GA H
Sbjct: 270 SPPLSGANH 278



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|195569139|ref|XP_002102568.1| GD19974 [Drosophila simulans]
 gi|194198495|gb|EDX12071.1| GD19974 [Drosophila simulans]
          Length = 658

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 567 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 602



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 575 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 609


>gi|33641772|gb|AAQ24371.1| BarX/Bsh [Halichondria bowerbanki]
          Length = 253

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%)

Query: 13  QIKTWFQNRRT---KWKYVDK-YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +++T F  ++    + K+ DK YLSV  RMEL+  L L+E Q+KTWFQNRR K KKQ
Sbjct: 149 KLRTVFTEKQLDGLESKFADKKYLSVPDRMELANRLELSETQVKTWFQNRRMKCKKQ 205



 Score = 41.2 bits (95), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L+E Q+KTWFQNRR K K
Sbjct: 178 MELANRLELSETQVKTWFQNRRMKCK 203


>gi|17136362|ref|NP_476657.1| slouch, isoform A [Drosophila melanogaster]
 gi|123395|sp|P22807.1|SLOU_DROME RecName: Full=Homeobox protein slou; AltName: Full=Homeobox protein
           NK-1; AltName: Full=Protein slouch; AltName: Full=S59/2
 gi|8531|emb|CAA39067.1| S59 protein [Drosophila melanogaster]
 gi|23171898|gb|AAF55901.3| slouch, isoform A [Drosophila melanogaster]
 gi|227464|prf||1704199A S59 homeobox gene
          Length = 659

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 568 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 603



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 576 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 610


>gi|710352|gb|AAC46957.1| homeobox protein ceh-19 homolog; similar to Caenorhabditis
          elegans ceh-19 homeobox protein, Swiss-Prot Accession
          Number P26797, partial [Heliocidaris erythrogramma]
 gi|1585183|prf||2124326A HeHB19 gene
          Length = 66

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/32 (84%), Positives = 28/32 (87%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
           DKYLSVSKR+ELS  LNLTE QIKTWFQNRR
Sbjct: 35 ADKYLSVSKRLELSMSLNLTETQIKTWFQNRR 66



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 19/22 (86%)

Query: 1  MELSKLLNLTEVQIKTWFQNRR 22
          +ELS  LNLTE QIKTWFQNRR
Sbjct: 45 LELSMSLNLTETQIKTWFQNRR 66


>gi|46484687|gb|AAS98253.1| homeobox protein MSX2 [Eleutherodactylus coqui]
          Length = 258

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P GF   F
Sbjct: 156 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPILPPGFSLPF 215

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +GS
Sbjct: 216 PINSPIPAASLYGS 229



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 165 EFSSSLNLTETQVKIWFQNRRAKAK 189


>gi|385654496|gb|AFI61994.1| Hox-B3b [Anguilla japonica]
          Length = 411

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 14/84 (16%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK    KLK        G   P G
Sbjct: 193 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKD--QKLK--------GMGSPSG 242

Query: 87  GPLIFGAQHGSPTAPYFFSASMLD 110
           GP    +  GSP  P   SA  ++
Sbjct: 243 GP----SPTGSPPLPMQSSAGFMN 262



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLSERQIKIWFQNRRMKYK 229


>gi|355750648|gb|EHH54975.1| hypothetical protein EGM_04093 [Macaca fascicularis]
          Length = 422

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK--LKMVAHNRPTGFYFP 84
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   +K  L   A   P      
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPAGQSPERSPPL 273

Query: 85  GGGPLIFGAQHGSPTAPYF 103
           GG   + G  + +P+ P F
Sbjct: 274 GGAAPVPGLAYDAPSPPAF 292



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|340726028|ref|XP_003401365.1| PREDICTED: hypothetical protein LOC100649071 [Bombus terrestris]
          Length = 550

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 398 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 433



 Score = 43.1 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 406 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 440


>gi|332692501|gb|AEE90180.1| Homeobox B3b [Anguilla anguilla]
          Length = 411

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 14/84 (16%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK    KLK        G   P G
Sbjct: 193 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKD--QKLK--------GMGSPSG 242

Query: 87  GPLIFGAQHGSPTAPYFFSASMLD 110
           GP    +  GSP  P   SA  ++
Sbjct: 243 GP----SPTGSPPLPMQSSAGFMN 262



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLSERQIKIWFQNRRMKYK 229


>gi|297712744|ref|XP_002832897.1| PREDICTED: homeobox protein HMX1-like [Pongo abelii]
          Length = 377

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+  + + P
Sbjct: 253 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 303



 Score = 39.7 bits (91), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 265 LAASLQLTETQVKIWFQNRRNKWK 288


>gi|158702379|gb|ABW77565.1| homeobox protein HoxD3ab [Salmo salar]
          Length = 399

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G + P  
Sbjct: 187 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PIG-HSPDR 242

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 243 SPPLSGPNH 251



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 198 VEMANLLNLTERQIKIWFQNRRMKYK 223


>gi|395842721|ref|XP_003794162.1| PREDICTED: uncharacterized protein LOC100965638 [Otolemur
           garnettii]
          Length = 490

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212


>gi|395501931|ref|XP_003755340.1| PREDICTED: homeobox protein HMX3 [Sarcophilus harrisii]
          Length = 282

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+  
Sbjct: 177 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 220



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 187 LAASLHLTETQVKIWFQNRRNKWK 210


>gi|380024497|ref|XP_003696032.1| PREDICTED: uncharacterized protein LOC100868929 [Apis florea]
          Length = 575

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 422 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 457



 Score = 43.1 bits (100), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 430 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 464


>gi|15787868|dbj|BAB68535.1| LjMsxA [Lethenteron camtschaticum]
          Length = 111

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 45/76 (59%), Gaps = 12/76 (15%)

Query: 26 KYVDK-YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR---- 77
          KY  K YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +    
Sbjct: 3  KYRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAAAKPLLT 62

Query: 78 PTGFYFPGGGPLIFGA 93
          P GF    G P  FGA
Sbjct: 63 PAGF----GLPFQFGA 74



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          E S  LNLTE Q+K WFQNRR K K
Sbjct: 17 EFSNSLNLTETQVKIWFQNRRAKAK 41


>gi|291386484|ref|XP_002709761.1| PREDICTED: T-cell leukemia, homeobox 2-like [Oryctolagus cuniculus]
          Length = 284

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|432880471|ref|XP_004073714.1| PREDICTED: NK1 transcription factor-related protein 2-like, partial
           [Oryzias latipes]
          Length = 325

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 276 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 311



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 284 LNLALSLSLTETQVKIWFQNRRTKWK 309


>gi|345792568|ref|XP_544059.3| PREDICTED: NK1 transcription factor-related protein 2 [Canis lupus
           familiaris]
          Length = 315

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219


>gi|194041627|ref|XP_001927147.1| PREDICTED: NK1 transcription factor-related protein 2-like [Sus
           scrofa]
          Length = 320

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 187 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 222



 Score = 42.0 bits (97), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 195 LNLALSLSLTETQVKIWFQNRRTKWK 220


>gi|287324942|ref|NP_001165596.1| T-cell leukemia, homeobox 2 [Rattus norvegicus]
          Length = 284

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|312384373|gb|EFR29114.1| hypothetical protein AND_02195 [Anopheles darlingi]
          Length = 462

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1   MELSKLLNLTEVQIKTWFQNRR----TKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQ 56
           M +S L +    + +T F + +     K     +YLS  +R+EL+  L L+E Q+KTWFQ
Sbjct: 106 MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELATALGLSETQVKTWFQ 165

Query: 57  NRRTKWKKQL 66
           NRR K KKQL
Sbjct: 166 NRRMKHKKQL 175


>gi|260826732|ref|XP_002608319.1| nk homeobox 1a [Branchiostoma floridae]
 gi|229293670|gb|EEN64329.1| nk homeobox 1a [Branchiostoma floridae]
          Length = 341

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 237 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 272



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 245 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 279


>gi|62002543|gb|AAX58756.1| homeodomain protein Msx [Podocoryna carnea]
          Length = 201

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 8/74 (10%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           +YLS+++R ELS+ LNLTE QIK WFQNRR K K     +L+     + +   FPG    
Sbjct: 124 QYLSINERAELSEQLNLTETQIKIWFQNRRAKEK-----RLREAEFEKSSRTIFPGSN-- 176

Query: 90  IFGAQHGSPTAPYF 103
            F + + SPT   +
Sbjct: 177 -FRSCYCSPTREIY 189



 Score = 41.2 bits (95), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 20/25 (80%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           ELS+ LNLTE QIK WFQNRR K K
Sbjct: 133 ELSEQLNLTETQIKIWFQNRRAKEK 157


>gi|547691|sp|P35993.1|HOX7P_XENLA RecName: Full=Homeobox protein XHOX-7.1'
 gi|64785|emb|CAA41573.1| homeobox containing peptide Hhox7.1' [Xenopus laevis]
          Length = 291

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P GF   F
Sbjct: 183 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAKPILPPGFSIPF 242

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +GS
Sbjct: 243 PINSPIQAASLYGS 256



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 192 EFSSSLNLTETQVKIWFQNRRAKAK 216


>gi|213983079|ref|NP_001135456.1| pancreas/duodenum homeobox protein 1 [Sus scrofa]
 gi|209401974|gb|ACI45754.1| pancreatic and duodenal homeobox 1 [Sus scrofa]
          Length = 282

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 20/82 (24%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203

Query: 66  LASKLKMVAHNRPTGFYFPGGG 87
              K       R  G    GGG
Sbjct: 204 EDKK-------RSCGTVAAGGG 218



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|195344400|ref|XP_002038775.1| GM11004 [Drosophila sechellia]
 gi|194133796|gb|EDW55312.1| GM11004 [Drosophila sechellia]
          Length = 660

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 569 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 604



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 577 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 611


>gi|156374167|ref|XP_001629680.1| predicted protein [Nematostella vectensis]
 gi|156216685|gb|EDO37617.1| predicted protein [Nematostella vectensis]
          Length = 63

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
          +KYL+ SKR ELSK L +TE Q+KTWFQNRRTKW+K
Sbjct: 28 EKYLTESKRAELSKDLGMTETQVKTWFQNRRTKWRK 63



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          ELSK L +TE Q+KTWFQNRRTKW+
Sbjct: 38 ELSKDLGMTETQVKTWFQNRRTKWR 62


>gi|2765012|emb|CAA70835.1| A2 [Helobdella triserialis]
          Length = 213

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 34/54 (62%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
          + DKY+S  +R+EL+  LNLTE  IK WFQNRR KWKK  A K+     N   G
Sbjct: 27 HFDKYISRPRRVELASSLNLTERHIKIWFQNRRMKWKKMEAGKITSTTANNFEG 80



 Score = 40.8 bits (94), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
          +EL+  LNLTE  IK WFQNRR KWK ++
Sbjct: 38 VELASSLNLTERHIKIWFQNRRMKWKKME 66


>gi|410901064|ref|XP_003964016.1| PREDICTED: NK1 transcription factor-related protein 2-like
           [Takifugu rubripes]
          Length = 264

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 150 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 185



 Score = 42.0 bits (97), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 158 LNLALSLSLTETQVKIWFQNRRTKWK 183


>gi|332692534|gb|AEE90209.1| Homeobox D3a [Anguilla anguilla]
 gi|385654531|gb|AFI62025.1| Hox-D3a [Anguilla japonica]
          Length = 396

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G + P  
Sbjct: 181 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PIG-HSPDR 236

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 237 SPPLSGPNH 245



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 192 VEMANLLNLTERQIKIWFQNRRMKYK 217


>gi|326928396|ref|XP_003210366.1| PREDICTED: homeobox protein MSX-2-like [Meleagris gallopavo]
          Length = 295

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFYFP 84
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF  P
Sbjct: 193 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLP 251



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
           E S  LNLTE Q+K WFQNRR K K +       +  EL KL    +  + + F
Sbjct: 202 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAAKPMLPSGF 248


>gi|391339305|ref|XP_003743992.1| PREDICTED: homeobox protein BarH-like 1-like [Metaseiulus
           occidentalis]
          Length = 191

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 34/51 (66%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           KYLS   R EL++ L LT++Q+KTW+QNRR KWKKQ+      +   RP G
Sbjct: 101 KYLSTPDRAELARALGLTQLQVKTWYQNRRMKWKKQVMQGGCPIPPTRPKG 151



 Score = 42.0 bits (97), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL++ L LT++Q+KTW+QNRR KWK
Sbjct: 110 ELARALGLTQLQVKTWYQNRRMKWK 134


>gi|39850042|gb|AAH64202.1| msx2 protein [Xenopus (Silurana) tropicalis]
          Length = 283

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P GF   F
Sbjct: 181 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAKPILPPGFSIPF 240

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +GS
Sbjct: 241 PINSPIQAASLYGS 254



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 190 EFSSSLNLTETQVKIWFQNRRAKAK 214


>gi|47087215|ref|NP_998713.1| NK1 transcription factor related 2-like,b [Danio rerio]
 gi|46250713|dbj|BAD15087.1| homeodomain protein Sax2 [Danio rerio]
 gi|120538603|gb|AAI29150.1| NK1 transcription factor related 2-like,b [Danio rerio]
          Length = 373

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 250 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 285



 Score = 42.0 bits (97), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 258 LNLALSLSLTETQVKIWFQNRRTKWK 283


>gi|449506143|ref|XP_002189595.2| PREDICTED: homeobox protein HMX3, partial [Taeniopygia guttata]
          Length = 121

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 15 MKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 58



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L+LTE Q+K WFQNRR KWK
Sbjct: 27 LAASLHLTETQVKIWFQNRRNKWK 50


>gi|158936920|dbj|BAF91575.1| MsxB protein [Pandinus imperator]
          Length = 116

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL-KMVAHNRPT----GFYFP 84
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+   ++L K+    RP     GF   
Sbjct: 16  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKLRMSARPLLPSFGFTLA 75

Query: 85  GGGPLIFGAQH-GSPTAPYF 103
           G GP +    H GS   P+ 
Sbjct: 76  GPGPFLPPPAHFGSNARPFL 95



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 24/43 (55%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
          E S  LNLTE Q+K WFQNRR K K + +      RM    LL
Sbjct: 25 EFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKLRMSARPLL 67


>gi|444729270|gb|ELW69695.1| NK1 transcription factor-related protein 2 [Tupaia chinensis]
          Length = 190

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 40/74 (54%), Gaps = 13/74 (17%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ        A        FP     
Sbjct: 117 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGXXXXXAS-------FP----- 164

Query: 90  IFGAQHGSPTAPYF 103
              A  GSP AP+ 
Sbjct: 165 -LTAAAGSPFAPFL 177



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 125 LNLALSLSLTETQVKIWFQNRRTKWK 150


>gi|395841170|ref|XP_003793419.1| PREDICTED: T-cell leukemia homeobox protein 2 [Otolemur garnettii]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|348566461|ref|XP_003469020.1| PREDICTED: T-cell leukemia homeobox protein 2-like [Cavia
           porcellus]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|348501770|ref|XP_003438442.1| PREDICTED: NK1 transcription factor-related protein 2-like
           [Oreochromis niloticus]
          Length = 266

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 152 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 187



 Score = 41.6 bits (96), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 160 LNLALSLSLTETQVKIWFQNRRTKWK 185


>gi|119220590|ref|NP_037114.2| homeobox protein MSX-2 [Rattus norvegicus]
 gi|149039956|gb|EDL94072.1| rCG24176 [Rattus norvegicus]
          Length = 267

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFYFP 84
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF  P
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLP 223



 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAK 198


>gi|405956899|gb|EKC23142.1| Transmembrane protein 2 [Crassostrea gigas]
          Length = 1044

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK  A +
Sbjct: 308 HFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKDEAKR 350



 Score = 44.3 bits (103), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 319 IELAAMLNLTERHIKIWFQNRRMKWK 344


>gi|391348309|ref|XP_003748390.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Metaseiulus
           occidentalis]
          Length = 354

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 34/43 (79%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R +L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 211 HKQKYLASAERAQLAKQLKMTDAQVKTWFQNRRTKWRRQTAEE 253



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51
           +L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+   + ++
Sbjct: 223 QLAKQLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMMSLQAEV 272


>gi|301614558|ref|XP_002936749.1| PREDICTED: homeobox protein XHOX-7.1' [Xenopus (Silurana)
           tropicalis]
          Length = 256

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P GF   F
Sbjct: 154 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAKPILPPGFSIPF 213

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +GS
Sbjct: 214 PINSPIQAASLYGS 227



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 163 EFSSSLNLTETQVKIWFQNRRAKAK 187


>gi|170070126|ref|XP_001869473.1| nk homeobox protein [Culex quinquefasciatus]
 gi|167866042|gb|EDS29425.1| nk homeobox protein [Culex quinquefasciatus]
          Length = 209

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 117 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 152



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 125 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 159


>gi|327267728|ref|XP_003218651.1| PREDICTED: NK1 transcription factor-related protein 2-like [Anolis
           carolinensis]
          Length = 286

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 168 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 203



 Score = 42.0 bits (97), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 176 LNLALSLSLTETQVKIWFQNRRTKWK 201


>gi|442620320|ref|NP_001262808.1| slouch, isoform B [Drosophila melanogaster]
 gi|440217717|gb|AGB96188.1| slouch, isoform B [Drosophila melanogaster]
          Length = 698

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 568 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 603



 Score = 42.4 bits (98), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 576 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 610


>gi|344283746|ref|XP_003413632.1| PREDICTED: T-cell leukemia homeobox protein 2-like [Loxodonta
           africana]
          Length = 355

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|307177145|gb|EFN66378.1| Brain-specific homeobox protein [Camponotus floridanus]
          Length = 318

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++ V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 104 ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 163

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 164 RRMKHKKQL 172



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 144 VELAAALHLSETQVKTWFQNRRMKHK 169


>gi|156378043|ref|XP_001630954.1| predicted protein [Nematostella vectensis]
 gi|156217985|gb|EDO38891.1| predicted protein [Nematostella vectensis]
          Length = 71

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 35/42 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          KYL++S+R  L+K ++LT  Q+KTWFQNRRTKWKKQ++  L+
Sbjct: 24 KYLTISERNSLAKSMHLTNTQVKTWFQNRRTKWKKQMSPDLE 65



 Score = 41.6 bits (96), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 21/24 (87%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+K ++LT  Q+KTWFQNRRTKWK
Sbjct: 34 LAKSMHLTNTQVKTWFQNRRTKWK 57


>gi|45383057|ref|NP_989890.1| homeobox protein MSX-2 [Gallus gallus]
 gi|1170325|sp|P28362.2|MSX2_CHICK RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8; Short=CHOX-8; Short=GHox-8
 gi|236952|gb|AAB20018.1| homeobox-containing Hox-8 [Gallus gallus]
          Length = 259

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 157 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 216

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +G+
Sbjct: 217 PINSPIQAASLYGT 230



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 166 EFSSSLNLTETQVKIWFQNRRAKAK 190


>gi|63616|emb|CAA44007.1| homeodomain protein [Gallus gallus]
          Length = 259

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 157 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 216

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +G+
Sbjct: 217 PINSPIQAASLYGT 230



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 166 EFSSSLNLTETQVKIWFQNRRAKAK 190


>gi|7248798|gb|AAF43673.1|AF223361_1 homeodomain protein Nkx-1.2E4.29 [Mus musculus]
          Length = 216

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214



 Score = 41.6 bits (96), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212


>gi|351698791|gb|EHB01710.1| T-cell leukemia homeobox protein 2 [Heterocephalus glaber]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|449474490|ref|XP_004175886.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-2 [Taeniopygia
           guttata]
          Length = 258

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFYFP 84
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF  P
Sbjct: 156 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLP 214



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E S  LNLTE Q+K WFQNRR K K
Sbjct: 165 EFSSSLNLTETQVKIWFQNRRAKAK 189


>gi|47199053|emb|CAF88397.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 71

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 35/44 (79%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 23 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 66



 Score = 38.9 bits (89), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L+LTE Q+K WFQNRR KWK
Sbjct: 35 LAASLHLTETQVKIWFQNRRNKWK 58


>gi|328780349|ref|XP_001121341.2| PREDICTED: hypothetical protein LOC725504 [Apis mellifera]
          Length = 583

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 431 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 466



 Score = 42.7 bits (99), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 439 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGLDVN 473


>gi|332239110|ref|XP_003268748.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 1 [Nomascus
           leucogenys]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|157135796|ref|XP_001663597.1| nk homeobox protein [Aedes aegypti]
 gi|108870112|gb|EAT34337.1| AAEL013405-PA [Aedes aegypti]
          Length = 184

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 93  RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 128



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 101 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 135


>gi|432904534|ref|XP_004077379.1| PREDICTED: NK1 transcription factor-related protein 2-like [Oryzias
           latipes]
          Length = 267

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 153 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 188



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 161 LNLALSLSLTETQVKIWFQNRRTKWK 186


>gi|332239112|ref|XP_003268749.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 2 [Nomascus
           leucogenys]
          Length = 272

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 168 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 213



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 178 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 219


>gi|301772194|ref|XP_002921514.1| PREDICTED: t-cell leukemia homeobox protein 2-like [Ailuropoda
           melanoleuca]
 gi|281343056|gb|EFB18640.1| hypothetical protein PANDA_010409 [Ailuropoda melanoleuca]
          Length = 284

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|292619817|ref|XP_002664095.1| PREDICTED: homeobox protein HMX3-like [Danio rerio]
          Length = 145

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 34/42 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+Q+A++L+
Sbjct: 72  RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQIAAELE 113



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 82  LAASLHLTETQVKIWFQNRRNKWK 105


>gi|260826734|ref|XP_002608320.1| nk homeobox 1b [Branchiostoma floridae]
 gi|229293671|gb|EEN64330.1| nk homeobox 1b [Branchiostoma floridae]
          Length = 344

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 235 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 270



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + ++
Sbjct: 243 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDIN 277


>gi|118093551|ref|XP_428765.2| PREDICTED: homeobox protein Hox-D3 [Gallus gallus]
          Length = 413

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 198 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PAG-QSPER 253

Query: 87  GPLIFGAQH 95
            P + GA H
Sbjct: 254 SPPLSGAAH 262



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 209 VEMANLLNLTERQIKIWFQNRRMKYK 234


>gi|319429386|gb|ADV56968.1| homeodomain protein HoxD3a [Culter alburnus]
          Length = 301

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR ++KK   SK  M   + P G + P  
Sbjct: 182 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMEYKKDQKSKGIM---HSPLG-HSPDR 237

Query: 87  GPLIFGAQH 95
            P + G+ H
Sbjct: 238 SPPLSGSNH 246



 Score = 42.4 bits (98), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR ++K
Sbjct: 193 VEMANLLNLTERQIKIWFQNRRMEYK 218


>gi|383858977|ref|XP_003704975.1| PREDICTED: brain-specific homeobox protein homolog [Megachile
           rotundata]
          Length = 280

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++ V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 99  ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 158

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 159 RRMKHKKQL 167



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +EL+  L+L+E Q+KTWFQNRR K K   + L+ S
Sbjct: 139 VELAAALHLSETQVKTWFQNRRMKHKKQLRKLTTS 173


>gi|29372469|emb|CAD83854.1| homeobox protein AmphiNK1b [Branchiostoma floridae]
          Length = 332

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 223 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 258



 Score = 42.0 bits (97), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + ++
Sbjct: 231 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDIN 265


>gi|395543115|ref|XP_003775399.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX1-like
           [Sarcophilus harrisii]
          Length = 371

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA+ L+
Sbjct: 241 VKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAADLE 284



 Score = 39.7 bits (91), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 253 LAASLQLTETQVKIWFQNRRNKWK 276


>gi|340375568|ref|XP_003386306.1| PREDICTED: hypothetical protein LOC100632286 [Amphimedon
           queenslandica]
 gi|167859577|gb|ACA04743.1| Bsh-like [Amphimedon queenslandica]
          Length = 403

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 28/36 (77%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYLSV  RMEL+  L L+E Q+KTWFQNRR K KKQ
Sbjct: 293 KYLSVPDRMELANRLELSETQVKTWFQNRRMKCKKQ 328



 Score = 42.0 bits (97), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L L+E Q+KTWFQNRR K K
Sbjct: 301 MELANRLELSETQVKTWFQNRRMKCK 326


>gi|49903181|gb|AAH76418.1| Nkx1.2la protein [Danio rerio]
          Length = 152

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 46 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 81



 Score = 42.4 bits (98), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 20/47 (42%), Positives = 30/47 (63%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLT 47
           + L+  L+LTE Q+K WFQNRRTKWK  +  +  S +   + L N++
Sbjct: 54  LNLALSLSLTETQVKIWFQNRRTKWKKQNPGVESSLQAGTNSLPNIS 100


>gi|198431203|ref|XP_002121155.1| PREDICTED: similar to transcription factor protein [Ciona
           intestinalis]
          Length = 402

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYLS   RMEL++ L LT++Q+KTW+QNRR KWKKQ
Sbjct: 310 KYLSTPDRMELAETLGLTQLQVKTWYQNRRMKWKKQ 345



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL++ L LT++Q+KTW+QNRR KWK
Sbjct: 318 MELAETLGLTQLQVKTWYQNRRMKWK 343


>gi|403260327|ref|XP_003922627.1| PREDICTED: T-cell leukemia homeobox protein 2 [Saimiri boliviensis
           boliviensis]
          Length = 280

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|357617652|gb|EHJ70910.1| hypothetical protein KGM_06135 [Danaus plexippus]
          Length = 301

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 36/47 (76%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           ++YLSV+ R  L++ L LTE QIK WFQNRRTKWK++  + ++++A 
Sbjct: 109 NRYLSVAARGRLARQLRLTETQIKIWFQNRRTKWKRKYTNDVEILAQ 155



 Score = 42.4 bits (98), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L++ L LTE QIK WFQNRRTKWK
Sbjct: 120 LARQLRLTETQIKIWFQNRRTKWK 143


>gi|242017965|ref|XP_002429454.1| Homeobox protein MSX-2, putative [Pediculus humanus corporis]
 gi|212514386|gb|EEB16716.1| Homeobox protein MSX-2, putative [Pediculus humanus corporis]
          Length = 213

 Score = 56.6 bits (135), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 105 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 140



 Score = 41.6 bits (96), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 113 LNLALSLSLTETQVKIWFQNRRTKWK 138


>gi|312378783|gb|EFR25258.1| hypothetical protein AND_09570 [Anopheles darlingi]
          Length = 223

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 131 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 166



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 139 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 173


>gi|300798354|ref|NP_001179065.1| pancreas/duodenum homeobox protein 1 [Bos taurus]
 gi|296481754|tpg|DAA23869.1| TPA: pancreatic and duodenal homeobox 1-like [Bos taurus]
          Length = 285

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 147 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 206



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 179 VELAVMLNLTERHIKIWFQNRRMKWK 204


>gi|397478070|ref|XP_003810381.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein 2
           [Pan paniscus]
          Length = 284

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|321475733|gb|EFX86695.1| hypothetical protein DAPPUDRAFT_25746 [Daphnia pulex]
          Length = 136

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          +  KYL+ ++R  L+KLL +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 43 HKQKYLASAERAALAKLLKMTDAQVKTWFQNRRTKWRRQTAEE 85



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
          L+KLL +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 56 LAKLLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 97


>gi|299473903|gb|ADJ18234.1| Hox5 protein [Gibbula varia]
          Length = 267

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           + +KYL+  +R+E++  LNLTE QIK WFQNRR KWKK    KL  +A N
Sbjct: 201 HYNKYLTRRRRIEIAHALNLTERQIKIWFQNRRMKWKKD--HKLSHIAKN 248



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           +E++  LNLTE QIK WFQNRR KWK   K   ++K M L+  L
Sbjct: 212 IEIAHALNLTERQIKIWFQNRRMKWKKDHKLSHIAKNMNLANAL 255


>gi|242002026|ref|XP_002435656.1| homeobox protein MSX-2, putative [Ixodes scapularis]
 gi|215498992|gb|EEC08486.1| homeobox protein MSX-2, putative [Ixodes scapularis]
          Length = 149

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 4/82 (4%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL-KMVAHNRPTGFYFPGG 86
           + +YLS+++R E S  LNLTE Q+K WFQNRR K K+   ++L K+    RP     PG 
Sbjct: 36  IKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKLRMAMRP---LLPGA 92

Query: 87  GPLIFGAQHGSPTAPYFFSASM 108
             L      G+P+ P   +A M
Sbjct: 93  FGLNLSNPFGAPSVPGSVAAYM 114



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 25/43 (58%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
          E S  LNLTE Q+K WFQNRR K K + +      RM +  LL
Sbjct: 47 EFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKLRMAMRPLL 89


>gi|195118878|ref|XP_002003959.1| GI18190 [Drosophila mojavensis]
 gi|193914534|gb|EDW13401.1| GI18190 [Drosophila mojavensis]
          Length = 397

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 7/74 (9%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
             +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQL  +      N P  F     G
Sbjct: 269 AQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDTA---NEPVDFSRTESG 325

Query: 88  PLIFGAQHGSPTAP 101
               G Q G P +P
Sbjct: 326 ----GKQQGEPHSP 335



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 279 VELATALGLSETQVKTWFQNRRMKHK 304


>gi|114578297|ref|XP_001161223.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 2 [Pan
           troglodytes]
 gi|426336060|ref|XP_004029522.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 1 [Gorilla
           gorilla gorilla]
 gi|410299596|gb|JAA28398.1| T-cell leukemia homeobox 2 [Pan troglodytes]
 gi|410337301|gb|JAA37597.1| T-cell leukemia homeobox 2 [Pan troglodytes]
          Length = 284

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|91090025|ref|XP_967532.1| PREDICTED: similar to AGAP000484-PA [Tribolium castaneum]
 gi|270013697|gb|EFA10145.1| hypothetical protein TcasGA2_TC012332 [Tribolium castaneum]
          Length = 353

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 247 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 282



 Score = 41.6 bits (96), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 255 LNLALSLSLTETQVKIWFQNRRTKWK 280


>gi|410947228|ref|XP_003980354.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Felis catus]
          Length = 264

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|7706621|ref|NP_057254.1| T-cell leukemia homeobox protein 2 [Homo sapiens]
 gi|20532396|sp|O43763.2|TLX2_HUMAN RecName: Full=T-cell leukemia homeobox protein 2; AltName:
           Full=Homeobox protein Hox-11L1; AltName: Full=Neural
           crest homeobox protein
 gi|5748490|dbj|BAA83463.1| NCX [Homo sapiens]
 gi|13623503|gb|AAH06356.1| T-cell leukemia homeobox 2 [Homo sapiens]
 gi|119620036|gb|EAW99630.1| hCG41062, isoform CRA_b [Homo sapiens]
 gi|167773147|gb|ABZ92008.1| T-cell leukemia homeobox 2 [synthetic construct]
          Length = 284

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|444722037|gb|ELW62741.1| NK1 transcription factor-related protein 1 [Tupaia chinensis]
          Length = 225

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 96  RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 131



 Score = 41.6 bits (96), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 104 LNLALSLSLTETQVKIWFQNRRTKWK 129


>gi|431920976|gb|ELK18745.1| Pancreas/duodenum homeobox protein 1 [Pteropus alecto]
          Length = 317

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|6671|emb|CAA77837.1| ceh16-1 protein [Caenorhabditis elegans]
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
           DKYLSV+KR++LS+ LNLTE QIKTWFQNRR
Sbjct: 35 TDKYLSVNKRIQLSQTLNLTETQIKTWFQNRR 66



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 20/22 (90%)

Query: 1  MELSKLLNLTEVQIKTWFQNRR 22
          ++LS+ LNLTE QIKTWFQNRR
Sbjct: 45 IQLSQTLNLTETQIKTWFQNRR 66


>gi|395540364|ref|XP_003772125.1| PREDICTED: homeobox protein Hox-A3 [Sarcophilus harrisii]
          Length = 443

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +    +G   P  
Sbjct: 222 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS----SGGQSPSR 277

Query: 87  GPLIFGA 93
            P+  GA
Sbjct: 278 SPVPSGA 284



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 233 VEMANLLNLTERQIKIWFQNRRMKYK 258


>gi|350423720|ref|XP_003493570.1| PREDICTED: brain-specific homeobox protein homolog [Bombus
           impatiens]
          Length = 280

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++ V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 99  ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 158

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 159 RRMKHKKQL 167



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +EL+  L+L+E Q+KTWFQNRR K K   + L+ S
Sbjct: 139 VELAAALHLSETQVKTWFQNRRMKHKKQLRKLNTS 173


>gi|443683337|gb|ELT87636.1| hypothetical protein CAPTEDRAFT_30886, partial [Capitella teleta]
          Length = 65

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 22 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 57



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 30 LNLALSLNLTETQVKIWFQNRRTKWK 55


>gi|211935|gb|AAA48821.1| Hox 3, partial [Gallus gallus]
          Length = 168

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 22 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 59



 Score = 41.6 bits (96), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 32 LNLALSLSLTETQVKIWFQNRRTKWK 57


>gi|344279231|ref|XP_003411393.1| PREDICTED: hypothetical protein LOC100675193 [Loxodonta africana]
          Length = 635

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 506 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 541



 Score = 42.0 bits (97), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 514 LNLALSLSLTETQVKIWFQNRRTKWK 539


>gi|161612278|gb|AAI55954.1| Unknown (protein for IMAGE:7974039) [Xenopus laevis]
          Length = 160

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 55 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 96



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L+LTE Q+K WFQNRR KWK
Sbjct: 65 LAASLHLTETQVKIWFQNRRNKWK 88


>gi|328713518|ref|XP_003245101.1| PREDICTED: hypothetical protein LOC100575169 [Acyrthosiphon pisum]
          Length = 516

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+Q+A++++
Sbjct: 339 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQVAAEIE 382



 Score = 40.0 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 351 LAASLHLTETQVKIWFQNRRNKWK 374


>gi|340723006|ref|XP_003399890.1| PREDICTED: brain-specific homeobox protein homolog [Bombus
           terrestris]
          Length = 280

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++ V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 99  ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 158

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 159 RRMKHKKQL 167



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +EL+  L+L+E Q+KTWFQNRR K K   + L+ S
Sbjct: 139 VELAAALHLSETQVKTWFQNRRMKHKKQLRKLNTS 173


>gi|410901431|ref|XP_003964199.1| PREDICTED: homeobox protein MSH-C-like [Takifugu rubripes]
          Length = 253

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 9/76 (11%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK---------QLASKLKMVAHNRPTG 80
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+         +LA+K  + A   P  
Sbjct: 157 QYLSIAERAEFSNSLSLTETQVKIWFQNRRAKAKRLQEAEMEKLKLAAKPLLPAFAFPFP 216

Query: 81  FYFPGGGPLIFGAQHG 96
              P   P+++GA +G
Sbjct: 217 LNAPMAAPVLYGALNG 232


>gi|126332119|ref|XP_001372961.1| PREDICTED: homeobox protein HMX1-like [Monodelphis domestica]
          Length = 371

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA+ L+
Sbjct: 250 VKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAADLE 293



 Score = 39.7 bits (91), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 262 LAASLQLTETQVKIWFQNRRNKWK 285


>gi|114578299|ref|XP_001161183.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 1 [Pan
           troglodytes]
 gi|426336062|ref|XP_004029523.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 2 [Gorilla
           gorilla gorilla]
          Length = 272

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 168 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 213



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 178 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 219


>gi|4261869|gb|AAD14169.1|S75308_1 Msx-2 homolog [Homo sapiens]
 gi|834012|gb|AAB33867.1| homeobox protein [Homo sapiens]
 gi|1321638|dbj|BAA06549.1| MSX-2 [Homo sapiens]
 gi|1722694|dbj|BAA13949.1| MSX-2 [Homo sapiens]
 gi|1758335|gb|AAB42178.1| homeobox at bp 393..572 [Homo sapiens]
 gi|15930143|gb|AAH15509.1| Msh homeobox 2 [Homo sapiens]
 gi|32879971|gb|AAP88816.1| msh homeo box homolog 2 (Drosophila) [Homo sapiens]
 gi|61360081|gb|AAX41808.1| msh homeobox-like 2 [synthetic construct]
 gi|61360089|gb|AAX41809.1| msh homeobox-like 2 [synthetic construct]
 gi|61360096|gb|AAX41810.1| msh homeobox-like 2 [synthetic construct]
 gi|61360103|gb|AAX41811.1| msh homeobox-like 2 [synthetic construct]
 gi|119581785|gb|EAW61381.1| msh homeobox homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
 gi|119581786|gb|EAW61382.1| msh homeobox homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
 gi|123981394|gb|ABM82526.1| msh homeobox homolog 2 (Drosophila) [synthetic construct]
 gi|123996239|gb|ABM85721.1| msh homeobox homolog 2 (Drosophila) [synthetic construct]
 gi|307684722|dbj|BAJ20401.1| msh homeobox 2 [synthetic construct]
          Length = 267

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|110761706|ref|XP_001120703.1| PREDICTED: brain-specific homeobox protein homolog [Apis mellifera]
          Length = 282

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++ V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 99  ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 158

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 159 RRMKHKKQL 167



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +EL+  L+L+E Q+KTWFQNRR K K   + L+ S
Sbjct: 139 VELAAALHLSETQVKTWFQNRRMKHKKQLRKLNTS 173


>gi|410252254|gb|JAA14094.1| msh homeobox 2 [Pan troglodytes]
 gi|410341133|gb|JAA39513.1| msh homeobox 2 [Pan troglodytes]
          Length = 267

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.0 bits (92), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|322790744|gb|EFZ15488.1| hypothetical protein SINV_11468 [Solenopsis invicta]
          Length = 613

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L LTE Q+K WFQNRRTKWKKQ
Sbjct: 460 RYLSVCERLNLALELQLTETQVKIWFQNRRTKWKKQ 495



 Score = 42.4 bits (98), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 24/35 (68%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L LTE Q+K WFQNRRTKWK  +  L V+
Sbjct: 468 LNLALELQLTETQVKIWFQNRRTKWKKQNPGLDVN 502


>gi|156541886|ref|XP_001600701.1| PREDICTED: hypothetical protein LOC100116154 [Nasonia vitripennis]
          Length = 424

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 292 HKQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 334



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 305 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 346


>gi|308220066|gb|ADO22605.1| ANTP class homeobox transcription factor ANTP68 [Mnemiopsis
          leidyi]
          Length = 60

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/37 (70%), Positives = 31/37 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
          KYLSV +RMEL+  L L+E Q+KTWFQNRR KWKKQ+
Sbjct: 24 KYLSVPERMELAVSLRLSETQVKTWFQNRRMKWKKQV 60



 Score = 41.6 bits (96), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          MEL+  L L+E Q+KTWFQNRR KWK
Sbjct: 32 MELAVSLRLSETQVKTWFQNRRMKWK 57


>gi|334313843|ref|XP_003339952.1| PREDICTED: hypothetical protein LOC100019800 [Monodelphis
           domestica]
          Length = 484

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 362 RYLSVCERLNLALALSLTETQVKIWFQNRRTKWKKQ 397



 Score = 42.0 bits (97), Expect = 0.041,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 370 LNLALALSLTETQVKIWFQNRRTKWK 395


>gi|242018170|ref|XP_002429553.1| T-cell leukemia homeobox protein, putative [Pediculus humanus
           corporis]
 gi|212514507|gb|EEB16815.1| T-cell leukemia homeobox protein, putative [Pediculus humanus
           corporis]
          Length = 476

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 353 KYLASAERASLAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 392



 Score = 44.3 bits (103), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 363 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 404


>gi|388490070|ref|NP_001253421.1| msh homeobox 2 [Macaca mulatta]
 gi|384941540|gb|AFI34375.1| homeobox protein MSX-2 [Macaca mulatta]
          Length = 267

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|321458728|gb|EFX69791.1| hypothetical protein DAPPUDRAFT_17940 [Daphnia pulex]
          Length = 74

 Score = 56.2 bits (134), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 31/35 (88%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
          KYLSV+ R  +++LLNLTE Q+KTW+QNRRTKWK+
Sbjct: 25 KYLSVADRGNVAELLNLTETQVKTWYQNRRTKWKR 59



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 23/24 (95%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          +++LLNLTE Q+KTW+QNRRTKWK
Sbjct: 35 VAELLNLTETQVKTWYQNRRTKWK 58


>gi|380023634|ref|XP_003695621.1| PREDICTED: uncharacterized protein LOC100863936 [Apis florea]
          Length = 407

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 296 KYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 335



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 306 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 347


>gi|27886557|ref|NP_002440.2| homeobox protein MSX-2 [Homo sapiens]
 gi|328927072|ref|NP_001129097.2| homeobox protein MSX-2 [Pan troglodytes]
 gi|397485868|ref|XP_003814060.1| PREDICTED: homeobox protein MSX-2-like [Pan paniscus]
 gi|426351068|ref|XP_004043080.1| PREDICTED: homeobox protein MSX-2 [Gorilla gorilla gorilla]
 gi|146325000|sp|A1YF16.1|MSX2_GORGO RecName: Full=Homeobox protein MSX-2
 gi|146325001|sp|A1YG93.1|MSX2_PANPA RecName: Full=Homeobox protein MSX-2
 gi|311033429|sp|P35548.3|MSX2_HUMAN RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8
 gi|120974784|gb|ABM46734.1| MSX2 [Gorilla gorilla]
 gi|121484000|gb|ABM54318.1| MSX2 [Pan paniscus]
          Length = 267

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|410972185|ref|XP_003992541.1| PREDICTED: brain-specific homeobox protein homolog [Felis catus]
          Length = 399

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGG 87
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL  +        P G   P G 
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL--RKSQDEPKAPDGLESPEGS 188

Query: 88  P 88
           P
Sbjct: 189 P 189



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|109103483|ref|XP_001110250.1| PREDICTED: t-cell leukemia homeobox protein 2 isoform 2 [Macaca
           mulatta]
 gi|297667279|ref|XP_002811927.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 1 [Pongo
           abelii]
 gi|402891321|ref|XP_003908898.1| PREDICTED: T-cell leukemia homeobox protein 2 [Papio anubis]
          Length = 284

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231


>gi|63500|emb|CAA44425.1| Hox-8 [Gallus gallus]
 gi|228516|prf||1805245B Hox8 gene
          Length = 140

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 38  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 97

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +G+
Sbjct: 98  PINSPIQAASLYGT 111



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
          E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 47 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 75


>gi|149730055|ref|XP_001492117.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Equus
           caballus]
          Length = 282

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|146325002|sp|A2T764.1|MSX2_PANTR RecName: Full=Homeobox protein MSX-2
 gi|124111252|gb|ABM92019.1| MSX2 [Pan troglodytes]
          Length = 267

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|48958355|dbj|BAD23951.1| homeobox-containing Msx2 [Pelodiscus sinensis]
          Length = 210

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 108 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 167

Query: 84  PGGGPLIFGAQHGS 97
           P   P+   + +G+
Sbjct: 168 PINSPIQAASLYGT 181



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 117 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 145


>gi|402873463|ref|XP_003900594.1| PREDICTED: homeobox protein MSX-2 isoform 1 [Papio anubis]
 gi|402873465|ref|XP_003900595.1| PREDICTED: homeobox protein MSX-2 isoform 2 [Papio anubis]
          Length = 267

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|345790278|ref|XP_543155.3| PREDICTED: pancreas/duodenum homeobox protein 1 [Canis lupus
           familiaris]
 gi|318101584|gb|ADV40927.1| pancreatic and duodenum homeobox 1 [Canis lupus familiaris]
          Length = 282

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|148225480|ref|NP_001091156.1| homeobox protein Hox-D3 [Xenopus laevis]
 gi|223635192|sp|A1L2P5.1|HXD3_XENLA RecName: Full=Homeobox protein Hox-D3
 gi|120537996|gb|AAI29641.1| LOC100036911 protein [Xenopus laevis]
          Length = 413

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ PTG
Sbjct: 198 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PTG 248



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 209 VEMANLLNLTERQIKIWFQNRRMKYK 234


>gi|297687228|ref|XP_002821122.1| PREDICTED: T-cell leukemia homeobox protein 1 [Pongo abelii]
          Length = 336

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 35/49 (71%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 227 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERH 275



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++  L E+Q + + +N
Sbjct: 240 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERHQANRI--LLELQQEAFQKN 292


>gi|395731650|ref|XP_003775940.1| PREDICTED: T-cell leukemia homeobox protein 2 isoform 2 [Pongo
           abelii]
          Length = 272

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 168 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 213



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 178 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 219


>gi|82621533|gb|ABB86438.1| NVHD056-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339125|gb|ABG67826.1| NK-like 18, partial [Nematostella vectensis]
          Length = 60

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 33/37 (89%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
          KYL++S+R EL+K + L++ Q+KTWFQNRRTKWKKQ+
Sbjct: 24 KYLTISERNELAKSMYLSDTQVKTWFQNRRTKWKKQM 60



 Score = 41.6 bits (96), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          EL+K + L++ Q+KTWFQNRRTKWK
Sbjct: 33 ELAKSMYLSDTQVKTWFQNRRTKWK 57


>gi|403290249|ref|XP_003936239.1| PREDICTED: homeobox protein MSX-2, partial [Saimiri boliviensis
           boliviensis]
          Length = 246

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 144 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 203

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 204 PISSPLQAASIYGASY 219



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 153 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 181


>gi|402901654|ref|XP_003913760.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Papio anubis]
          Length = 281

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|449267060|gb|EMC78026.1| Homeobox protein MSX-2, partial [Columba livia]
          Length = 112

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
          +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 10 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 69

Query: 84 PGGGPLIFGAQHGS 97
          P   P+   + +G+
Sbjct: 70 PINSPIQAASLYGT 83



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 18/25 (72%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          E S  LNLTE Q+K WFQNRR K K
Sbjct: 19 EFSSSLNLTETQVKIWFQNRRAKAK 43


>gi|340709254|ref|XP_003393226.1| PREDICTED: hypothetical protein LOC100648311 [Bombus terrestris]
          Length = 407

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 296 KYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 335



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 306 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 347


>gi|198425503|ref|XP_002122743.1| PREDICTED: transcription factor protein [Ciona intestinalis]
          Length = 302

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           KYLS   RMEL+  L LT++Q+KTW+QNRR KWKKQ+
Sbjct: 190 KYLSTPDRMELADALGLTQLQVKTWYQNRRMKWKKQV 226



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           MEL+  L LT++Q+KTW+QNRR KWK
Sbjct: 198 MELADALGLTQLQVKTWYQNRRMKWK 223


>gi|332248293|ref|XP_003273299.1| PREDICTED: homeobox protein MSX-2 isoform 1 [Nomascus leucogenys]
          Length = 267

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202


>gi|126341821|ref|XP_001362823.1| PREDICTED: homeobox protein Hox-A3 isoform 1 [Monodelphis
           domestica]
          Length = 455

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +    +G   P  
Sbjct: 234 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS----SGGQSPSR 289

Query: 87  GPLIFGA 93
            P+  GA
Sbjct: 290 SPVPPGA 296



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 245 VEMANLLNLTERQIKIWFQNRRMKYK 270


>gi|51895955|gb|AAH81101.1| MSX1 protein, partial [Xenopus laevis]
          Length = 296

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 194 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 251

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 252 SFPLGTPVPTASLYGT 267



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 203 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 231


>gi|547690|sp|Q04281.1|HOX71_XENLA RecName: Full=Homeobox protein XHOX-7.1
 gi|64783|emb|CAA41574.1| homeobox containing peptide Xhox 7.1 [Xenopus laevis]
          Length = 295

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 193 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 250

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 251 SFPLGTPVPTASLYGT 266



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 202 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 230


>gi|11967767|emb|CAC19387.1| NK7 subclass protein [Discocelis tigrina]
          Length = 132

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          KYLS  +R E++  LN+TE Q+K WFQNRRTKWKKQ
Sbjct: 60 KYLSSGERAEMANQLNVTETQVKIWFQNRRTKWKKQ 95



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          E++  LN+TE Q+K WFQNRRTKWK
Sbjct: 69 EMANQLNVTETQVKIWFQNRRTKWK 93


>gi|359754084|gb|AEV59507.1| HOXA3 [Macropus eugenii]
          Length = 438

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +    +G   P  
Sbjct: 217 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS----SGGQSPSR 272

Query: 87  GPLIFGA 93
            P+  GA
Sbjct: 273 SPVPPGA 279



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 228 VEMANLLNLTERQIKIWFQNRRMKYK 253


>gi|95104784|gb|ABF51665.1| pancreatic and duodenal homeobox [Amia calva]
          Length = 258

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 15/73 (20%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 139 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 198

Query: 66  LASKLKMVAHNRP 78
                K V H  P
Sbjct: 199 --EDKKRVRHGDP 209



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 171 VELAVMLNLTERHIKIWFQNRRMKWK 196


>gi|234375|gb|AAB19630.1| Xhox-7.1 [Xenopus laevis, Peptide, 294 aa]
          Length = 294

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 192 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 249

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 250 SFPLGTPVPTASLYGT 265



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 201 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 229


>gi|429510500|gb|AFZ94988.1| transcription factor Hox 3 [Petromyzon marinus]
          Length = 498

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK
Sbjct: 256 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDHKSK 298



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 267 VEMANLLNLTERQIKIWFQNRRMKYK 292


>gi|315419577|gb|ADU15764.1| homeobox protein Hox-D3 [Anas platyrhynchos]
          Length = 125

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P  
Sbjct: 57  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGIMHS-PVG-QSPDR 112

Query: 87  GPLIFGAQH 95
            P + G  H
Sbjct: 113 SPPLSGPNH 121



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 68 VEMANLLNLTERQIKIWFQNRRMKYK 93


>gi|268370021|ref|NP_001084367.1| homeobox protein XHOX-7.1 [Xenopus laevis]
          Length = 275

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 173 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 230

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 231 SFPLGTPVPTASLYGT 246



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 182 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 210


>gi|6252807|dbj|BAA86235.1| HOXD3A [Oryzias latipes]
          Length = 216

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK
Sbjct: 1  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSK 43



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 12 VEMANLLNLTERQIKIWFQNRRMKYK 37


>gi|170035855|ref|XP_001845782.1| t-cell leukemia homeobox protein [Culex quinquefasciatus]
 gi|167878306|gb|EDS41689.1| t-cell leukemia homeobox protein [Culex quinquefasciatus]
          Length = 319

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 18/84 (21%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK------------LKMVAHNR 77
           KYL+ ++R  L++ L +T+ Q+KTWFQNRRTKW++Q A +            L + A   
Sbjct: 221 KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAL 280

Query: 78  PTGFYFPGGGPLIFGAQHGSPTAP 101
             GF    GGP    AQ  S TAP
Sbjct: 281 SKGF----GGPPPSAAQ--SATAP 298



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L++ L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 231 LARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 272


>gi|410933001|ref|XP_003979881.1| PREDICTED: homeobox protein MSH-C-like, partial [Takifugu rubripes]
          Length = 228

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLASKLKMVAHNRPTGFYFPGGGP 88
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   K+   ++P    F    P
Sbjct: 130 QYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKLASKPVLPAF--TLP 187

Query: 89  LIFGAQHGSPT 99
              GA  GSPT
Sbjct: 188 FPLGAHMGSPT 198



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 139 EFSNSLNLTETQVKIWFQNRRAKAKRLQE 167


>gi|390333402|ref|XP_003723701.1| PREDICTED: homeobox protein BarH-like 2-like [Strongylocentrotus
           purpuratus]
          Length = 280

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
             KYLSV++R  L+  L L E QIKTW+QNRRTKWK+Q     +M
Sbjct: 161 CQKYLSVAERGMLADRLGLNETQIKTWYQNRRTKWKRQTGPSERM 205



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 3/41 (7%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL 43
           L+  L L E QIKTW+QNRRTKWK   +    S+RME  +L
Sbjct: 173 LADRLGLNETQIKTWYQNRRTKWK---RQTGPSERMEELRL 210


>gi|195055983|ref|XP_001994892.1| GH13586 [Drosophila grimshawi]
 gi|193892655|gb|EDV91521.1| GH13586 [Drosophila grimshawi]
          Length = 106

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          + +YLS S+R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 1  MKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 44



 Score = 38.9 bits (89), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L LTE Q+K WFQNRR KWK
Sbjct: 13 LAASLRLTETQVKIWFQNRRNKWK 36


>gi|1708542|sp|P52947.1|PDX1_RAT RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Insulin promoter factor 1; Short=IPF-1; AltName:
           Full=Islet/duodenum homeobox 1; Short=IDX-1; AltName:
           Full=Somatostatin-transactivating factor 1; Short=STF-1
 gi|456962|gb|AAB29317.1| somatostatin transactivating factor-1 [Rattus sp.]
 gi|149034845|gb|EDL89565.1| pancreatic and duodenal homeobox gene 1 [Rattus norvegicus]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|410917085|ref|XP_003972017.1| PREDICTED: homeobox protein MSH-C-like [Takifugu rubripes]
          Length = 270

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLASKLKMVAHNRPTGFYFPGGGP 88
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   K+   ++P    F    P
Sbjct: 172 QYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKLASKPVLPAF--TLP 229

Query: 89  LIFGAQHGSPT 99
              GA  GSPT
Sbjct: 230 FPLGAHMGSPT 240



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 181 EFSNSLNLTETQVKIWFQNRRAKAKRLQE 209


>gi|443683336|gb|ELT87635.1| hypothetical protein CAPTEDRAFT_78648, partial [Capitella teleta]
          Length = 63

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  LNLTE Q+K WFQNRRTKWKKQ
Sbjct: 25 RYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKKQ 60



 Score = 41.6 bits (96), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  LNLTE Q+K WFQNRRTKWK
Sbjct: 33 LNLALSLNLTETQVKIWFQNRRTKWK 58


>gi|432936055|ref|XP_004082098.1| PREDICTED: uncharacterized protein LOC101175206 [Oryzias latipes]
          Length = 303

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 35/53 (66%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           V+KYLS  KR E++  L LTE Q+K WFQNRR KWK+   SK  + + +  TG
Sbjct: 175 VNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRKSKEHLASTHPDTG 227



 Score = 39.3 bits (90), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E++  L LTE Q+K WFQNRR KWK
Sbjct: 186 EVATSLMLTETQVKIWFQNRRMKWK 210


>gi|77748111|gb|AAI06247.1| MSX1 protein, partial [Xenopus laevis]
          Length = 298

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 196 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 253

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 254 SFPLGTPVPTASLYGT 269



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 205 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 233


>gi|82524647|ref|NP_001032329.1| msh homeobox 1 [Xenopus (Silurana) tropicalis]
 gi|89267424|emb|CAJ81598.1| msh homeo box homolog 1 (Drosophila) [Xenopus (Silurana)
           tropicalis]
 gi|213627003|gb|AAI70570.1| msh homeobox 1 [Xenopus (Silurana) tropicalis]
          Length = 275

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 173 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 230

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 231 SFPLGTPVPTASLYGT 246



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 182 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 210


>gi|297282735|ref|XP_001082431.2| PREDICTED: NK1 transcription factor-related protein 1-like [Macaca
           mulatta]
          Length = 411

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 282 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 317



 Score = 42.0 bits (97), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 290 LNLALSLSLTETQVKIWFQNRRTKWK 315


>gi|383209610|emb|CCE45703.1| antennapedia [Parasteatoda tepidariorum]
          Length = 327

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 7/65 (10%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL+  +R+E++  L LTE QIK WFQNRR KWKK+  SK++        G     G
Sbjct: 258 HFNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKSKME-------AGLVMGPG 310

Query: 87  GPLIF 91
           GP + 
Sbjct: 311 GPELV 315



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           +E++  L LTE QIK WFQNRR KWK  +K
Sbjct: 269 IEIAHTLCLTERQIKIWFQNRRMKWKKENK 298


>gi|351697541|gb|EHB00460.1| Pancreas/duodenum homeobox protein 1 [Heterocephalus glaber]
          Length = 286

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|158300107|ref|XP_320094.4| AGAP009302-PA [Anopheles gambiae str. PEST]
 gi|157013842|gb|EAA15156.4| AGAP009302-PA [Anopheles gambiae str. PEST]
          Length = 334

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1   MELSKLLNLTEVQIKTWFQNRR----TKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQ 56
           M +S L +    + +T F + +     K     +YLS  +R+EL+  L L+E Q+KTWFQ
Sbjct: 255 MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQ 314

Query: 57  NRRTKWKKQL 66
           NRR K KKQL
Sbjct: 315 NRRMKHKKQL 324


>gi|87042256|gb|ABD16192.1| Xlox, partial [Euprymna scolopes]
          Length = 233

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK  A +
Sbjct: 97  HFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKDEAKR 139



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 108 IELAAMLNLTERHIKIWFQNRRMKWK 133


>gi|38382942|gb|AAH62514.1| msx1 protein [Xenopus (Silurana) tropicalis]
          Length = 296

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 194 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAFGI 251

Query: 82  YFPGGGPLIFGAQHGS 97
            FP G P+   + +G+
Sbjct: 252 SFPLGTPVPTASLYGT 267



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 203 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 231


>gi|395857572|ref|XP_003801165.1| PREDICTED: NK1 transcription factor-related protein 1-like
           [Otolemur garnettii]
          Length = 405

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 276 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 311



 Score = 41.6 bits (96), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 284 LNLALSLSLTETQVKIWFQNRRTKWK 309


>gi|402881254|ref|XP_003904190.1| PREDICTED: T-cell leukemia homeobox protein 1 [Papio anubis]
          Length = 412

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 303 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 345



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 316 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 357


>gi|240065085|gb|ACS44656.1| pancreas duodenal homeobox-1 [Acomys cahirinus]
          Length = 286

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|46048820|ref|NP_990345.1| T-cell leukemia homeobox protein 3 [Gallus gallus]
 gi|6016287|sp|O93367.1|TLX3_CHICK RecName: Full=T-cell leukemia homeobox protein 3; AltName:
           Full=Homeobox TLX-3; AltName: Full=Homeobox protein
           Hox-11L2
 gi|3243073|gb|AAC23901.1| homeodomain protein [Gallus gallus]
          Length = 297

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 192 HRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 234



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 205 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 246


>gi|220898179|gb|ACL81435.1| HoxA3 [Latimeria menadoensis]
          Length = 411

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 4/63 (6%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M     P+G   P  
Sbjct: 189 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMT----PSGGQSPSR 244

Query: 87  GPL 89
            P+
Sbjct: 245 SPI 247



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 200 VEMANLLNLTERQIKIWFQNRRMKYK 225


>gi|242023322|ref|XP_002432083.1| brain-specific homeobox protein, putative [Pediculus humanus
           corporis]
 gi|212517457|gb|EEB19345.1| brain-specific homeobox protein, putative [Pediculus humanus
           corporis]
          Length = 342

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 31/37 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS  +R+EL+  LNL+E Q+KTWFQNRR K+KKQL
Sbjct: 120 RYLSTPERVELANALNLSETQVKTWFQNRRMKYKKQL 156



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  LNL+E Q+KTWFQNRR K+K
Sbjct: 128 VELANALNLSETQVKTWFQNRRMKYK 153


>gi|2935557|gb|AAC05157.1| insulin upstream factor 1 [Homo sapiens]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|2495288|sp|P70118.1|PDX1_MESAU RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Homeodomain protein PDX1; AltName: Full=Insulin
           promoter factor 1; Short=IPF-1
 gi|1658066|gb|AAB18252.1| homeodomain protein PDX1 [Mesocricetus auratus]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|431838890|gb|ELK00819.1| T-cell leukemia homeobox protein 1 [Pteropus alecto]
          Length = 278

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 169 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 211



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 182 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 223


>gi|73954990|ref|XP_546472.2| PREDICTED: brain-specific homeobox protein homolog [Canis lupus
           familiaris]
          Length = 232

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|170054312|ref|XP_001863070.1| brain-specific homeobox protein [Culex quinquefasciatus]
 gi|167874590|gb|EDS37973.1| brain-specific homeobox protein [Culex quinquefasciatus]
          Length = 370

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 1   MELSKLLNLTEVQIKTWFQNRR----TKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQ 56
           M +S L +    + +T F + +     K     +YLS  +R+EL+  L L+E Q+KTWFQ
Sbjct: 168 MGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQRYLSTPERVELASALGLSETQVKTWFQ 227

Query: 57  NRRTKWKKQL 66
           NRR K KKQL
Sbjct: 228 NRRMKHKKQL 237


>gi|4557673|ref|NP_000200.1| pancreas/duodenum homeobox protein 1 [Homo sapiens]
 gi|1708540|sp|P52945.1|PDX1_HUMAN RecName: Full=Pancreas/duodenum homeobox protein 1; Short=PDX-1;
           AltName: Full=Glucose-sensitive factor; Short=GSF;
           AltName: Full=Insulin promoter factor 1; Short=IPF-1;
           AltName: Full=Insulin upstream factor 1; Short=IUF-1;
           AltName: Full=Islet/duodenum homeobox-1; Short=IDX-1;
           AltName: Full=Somatostatin-transactivating factor 1;
           Short=STF-1
 gi|929923|gb|AAA74012.1| insulin promoter factor 1 [Homo sapiens]
 gi|1197838|gb|AAA88820.1| insulin promoter factor 1 [Homo sapiens]
 gi|1486365|emb|CAA68169.1| insulin promoter factor 1 (IPF-1) [Homo sapiens]
 gi|1839457|gb|AAB47101.1| insulin promoter factor 1 [Homo sapiens]
 gi|2665701|gb|AAB88463.1| insulin promoter factor 1 [Homo sapiens]
 gi|94963115|gb|AAI11593.1| PDX1 protein [synthetic construct]
 gi|119628825|gb|EAX08420.1| insulin promoter factor 1, homeodomain transcription factor [Homo
           sapiens]
 gi|208968645|dbj|BAG74161.1| pancreatic and duodenal homeobox 1 [synthetic construct]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|189241291|ref|XP_974983.2| PREDICTED: similar to t-cell leukemia homeobox protein [Tribolium
           castaneum]
          Length = 381

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 274 HKQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 316



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 287 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 328


>gi|146325045|sp|A1YF08.1|PDX1_GORGO RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Homeodomain protein PDX1; AltName: Full=Insulin
           promoter factor 1; Short=IPF-1
 gi|120974741|gb|ABM46726.1| IPF1 [Gorilla gorilla]
          Length = 284

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|50838802|ref|NP_074043.3| pancreas/duodenum homeobox protein 1 [Rattus norvegicus]
 gi|454392|gb|AAA18355.1| islet/duodenum homeobox-1 [Rattus norvegicus]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|2924331|emb|CAA05636.1| HOX11L1 [Homo sapiens]
          Length = 275

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 172 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAER 211



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 182 LAKALRMTDAQVKTWFQNRRTKWR 205


>gi|327281669|ref|XP_003225569.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Anolis
           carolinensis]
          Length = 279

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ LLNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELALLLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ LLNLTE  IK WFQNRR KWK
Sbjct: 178 VELALLLNLTERHIKIWFQNRRMKWK 203


>gi|125490325|ref|NP_001074947.1| pancreas/duodenum homeobox protein 1 [Pan troglodytes]
 gi|146325047|sp|A2T756.1|PDX1_PANTR RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Homeodomain protein PDX1; AltName: Full=Insulin
           promoter factor 1; Short=IPF-1
 gi|124111238|gb|ABM92011.1| IPF1 [Pan troglodytes]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|25092685|ref|NP_739572.1| T-cell leukemia homeobox protein 3 [Danio rerio]
 gi|22086281|gb|AAM90624.1|AF398519_1 T-cell leukemia associated homeodomain protein Tlx3b [Danio rerio]
 gi|190336867|gb|AAI62310.1| T-cell leukemia, homeobox 3b [Danio rerio]
 gi|190339422|gb|AAI62334.1| T-cell leukemia, homeobox 3b [Danio rerio]
          Length = 300

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 194 HRQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 236



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 207 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 248


>gi|7130|emb|CAA45912.1| msh [Hydra viridissima]
          Length = 128

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 35/48 (72%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR 77
          +YLS+S+R ELS+LL LTE QIK WFQNRR K K+   ++++    NR
Sbjct: 40 QYLSISERAELSELLRLTETQIKIWFQNRRAKQKRSKEAEIEESVRNR 87



 Score = 41.2 bits (95), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 20/25 (80%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          ELS+LL LTE QIK WFQNRR K K
Sbjct: 49 ELSELLRLTETQIKIWFQNRRAKQK 73


>gi|351694610|gb|EHA97528.1| Homeobox protein HMX3 [Heterocephalus glaber]
          Length = 384

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 34/42 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 277 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELE 318



 Score = 38.9 bits (89), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 287 LAASLHLTETQVKIWFQNRRNKWK 310


>gi|332838046|ref|XP_522208.3| PREDICTED: brain-specific homeobox protein homolog [Pan
           troglodytes]
          Length = 233

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|296203615|ref|XP_002748960.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Callithrix
           jacchus]
          Length = 282

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|119620035|gb|EAW99629.1| hCG41062, isoform CRA_a [Homo sapiens]
 gi|119620037|gb|EAW99631.1| hCG41062, isoform CRA_a [Homo sapiens]
          Length = 216

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A + +   H
Sbjct: 112 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 157



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +LL
Sbjct: 122 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 163


>gi|109120277|ref|XP_001096758.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Macaca
           mulatta]
          Length = 281

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|440900645|gb|ELR51727.1| Pancreas/duodenum homeobox protein 1, partial [Bos grunniens mutus]
          Length = 184

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 43/82 (52%), Gaps = 20/82 (24%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 94  ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 153

Query: 66  LASKLKMVAHNRPTGFYFPGGG 87
              K       R  G    GGG
Sbjct: 154 EDKK-------RSCGPPAAGGG 168



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 126 VELAVMLNLTERHIKIWFQNRRMKWK 151


>gi|431842059|gb|ELK01408.1| Brain-specific homeobox protein like protein [Pteropus alecto]
          Length = 232

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|397498490|ref|XP_003820015.1| PREDICTED: brain-specific homeobox protein homolog [Pan paniscus]
          Length = 233

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|147901462|ref|NP_001091639.1| brain-specific homeobox protein homolog [Homo sapiens]
 gi|156630463|sp|Q3C1V8.2|BSH_HUMAN RecName: Full=Brain-specific homeobox protein homolog
          Length = 233

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|300796488|ref|NP_001179998.1| brain-specific homeobox protein homolog [Bos taurus]
 gi|296480162|tpg|DAA22277.1| TPA: brain specific homeobox-like [Bos taurus]
          Length = 232

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|82621609|gb|ABB86476.1| NVHD033-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339127|gb|ABG67827.1| NK-like 19, partial [Nematostella vectensis]
          Length = 60

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
          KYL++S+R  L+K ++LT  Q+KTWFQNRRTKWKKQ+
Sbjct: 24 KYLTISERNSLAKSMHLTNTQVKTWFQNRRTKWKKQM 60



 Score = 41.2 bits (95), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 17/24 (70%), Positives = 21/24 (87%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+K ++LT  Q+KTWFQNRRTKWK
Sbjct: 34 LAKSMHLTNTQVKTWFQNRRTKWK 57


>gi|426375026|ref|XP_004054352.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Gorilla gorilla
           gorilla]
          Length = 284

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|297693748|ref|XP_002824168.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Pongo abelii]
          Length = 283

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|426370818|ref|XP_004052355.1| PREDICTED: brain-specific homeobox protein homolog [Gorilla gorilla
           gorilla]
          Length = 232

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|300795458|ref|NP_001178924.1| brain-specific homeobox protein homolog [Rattus norvegicus]
          Length = 232

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|332021342|gb|EGI61716.1| Brain-specific homeobox protein [Acromyrmex echinatior]
          Length = 336

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           V +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 132 VQRYLSTPERVELAAALHLSETQVKTWFQNRRMKHKKQL 170



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 142 VELAAALHLSETQVKTWFQNRRMKHK 167


>gi|308485670|ref|XP_003105033.1| CRE-CEH-9 protein [Caenorhabditis remanei]
 gi|308256978|gb|EFP00931.1| CRE-CEH-9 protein [Caenorhabditis remanei]
          Length = 156

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           KYLS S R EL++ L++TE Q+K WFQNRRTKWKK  + K ++ +   P
Sbjct: 98  KYLSSSDRSELARRLDVTETQVKIWFQNRRTKWKKIESEKERIASEVIP 146



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           EL++ L++TE Q+K WFQNRRTKWK ++
Sbjct: 107 ELARRLDVTETQVKIWFQNRRTKWKKIE 134


>gi|285931|dbj|BAA03611.1| HOX-8 protein [Homo sapiens]
          Length = 172

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 70  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 129

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 130 PISSPLQAASIYGASY 145



 Score = 39.3 bits (90), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 79  EFSSSLNLTETQVKIWFQNRRAKAKRLQE 107


>gi|358419224|ref|XP_003584166.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
          Length = 359

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
           +YLS S+R  L+  L+LTE Q+K W QNRR KWK+QLA++L+  
Sbjct: 252 RYLSSSERAGLAASLHLTETQVKIWLQNRRNKWKRQLAAELEAA 295



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K W QNRR KWK
Sbjct: 262 LAASLHLTETQVKIWLQNRRNKWK 285


>gi|350588576|ref|XP_003482678.1| PREDICTED: brain-specific homeobox protein homolog [Sus scrofa]
          Length = 232

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|270014244|gb|EFA10692.1| hypothetical protein TcasGA2_TC011749 [Tribolium castaneum]
          Length = 295

 Score = 55.8 bits (133), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 188 HKQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 230



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 201 LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 242


>gi|440905846|gb|ELR56169.1| Brain-specific homeobox protein-like protein [Bos grunniens mutus]
          Length = 228

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 127 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 165



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 137 VELATALSLSETQVKTWFQNRRMKHK 162


>gi|126326512|ref|XP_001370233.1| PREDICTED: brain-specific homeobox protein homolog [Monodelphis
           domestica]
          Length = 233

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|30142687|ref|NP_839976.1| brain-specific homeobox protein homolog [Mus musculus]
 gi|51701282|sp|Q810B3.1|BSH_MOUSE RecName: Full=Brain-specific homeobox protein homolog
 gi|29569149|gb|AAO84023.1| brain-specific homeodomain protein [Mus musculus]
 gi|74355059|gb|AAI04387.1| Brain specific homeobox [Mus musculus]
 gi|74355499|gb|AAI04388.1| Brain specific homeobox [Mus musculus]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|351709143|gb|EHB12062.1| Brain-specific homeobox protein-like protein [Heterocephalus
           glaber]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|312073297|ref|XP_003139457.1| homeobox protein ceh-9 [Loa loa]
 gi|307765381|gb|EFO24615.1| homeobox protein ceh-9 [Loa loa]
          Length = 144

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 30/35 (85%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           KYLS S+R EL+KLL +TE Q+K WFQNRRTKWK+
Sbjct: 90  KYLSSSERGELAKLLCVTETQVKIWFQNRRTKWKR 124



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           EL+KLL +TE Q+K WFQNRRTKWK
Sbjct: 99  ELAKLLCVTETQVKIWFQNRRTKWK 123


>gi|1709146|sp|P52953.1|MSX2_RAT RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8-1
 gi|529694|gb|AAA20669.1| MSX-2 [Rattus norvegicus]
          Length = 139

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 6/66 (9%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 37  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 96

Query: 84  PGGGPL 89
           P   PL
Sbjct: 97  PINSPL 102



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
          E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 46 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 74


>gi|348573811|ref|XP_003472684.1| PREDICTED: brain-specific homeobox protein homolog [Cavia
           porcellus]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|45383147|ref|NP_989843.1| brain-specific homeobox protein homolog [Gallus gallus]
 gi|51701277|sp|Q6RFL5.1|BSH_CHICK RecName: Full=Brain-specific homeobox protein homolog
 gi|40737191|gb|AAR89086.1| brain-specific homeodomain protein [Gallus gallus]
          Length = 233

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 133 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 171



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 143 VELATALSLSETQVKTWFQNRRMKHK 168


>gi|334311449|ref|XP_003339620.1| PREDICTED: LOW QUALITY PROTEIN: t-cell leukemia homeobox protein
           3-like [Monodelphis domestica]
          Length = 290

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 188 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 227



 Score = 46.2 bits (108), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 198 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 239


>gi|146325046|sp|A1YG85.1|PDX1_PANPA RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Homeodomain protein PDX1; AltName: Full=Insulin
           promoter factor 1; Short=IPF-1
 gi|121483986|gb|ABM54310.1| IPF1 [Pan paniscus]
          Length = 283

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|355567153|gb|EHH23532.1| hypothetical protein EGK_07010 [Macaca mulatta]
 gi|355752729|gb|EHH56849.1| hypothetical protein EGM_06334 [Macaca fascicularis]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|348578607|ref|XP_003475074.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein
           1-like [Cavia porcellus]
          Length = 335

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 229 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 268



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 239 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 288

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 289 QKSLAQPLPADPLCVHN 305


>gi|332242176|ref|XP_003270260.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Nomascus
           leucogenys]
          Length = 283

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|327283055|ref|XP_003226257.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-D3-like
           [Anolis carolinensis]
          Length = 445

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G   P
Sbjct: 226 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAGGQSP 280



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 237 VEMANLLNLTERQIKIWFQNRRMKYK 262


>gi|355700893|gb|EHH28914.1| Pancreas/duodenum homeobox protein 1, partial [Macaca mulatta]
          Length = 238

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 136 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 195



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 168 VELAVMLNLTERHIKIWFQNRRMKWK 193


>gi|332208512|ref|XP_003253349.1| PREDICTED: brain-specific homeobox protein homolog [Nomascus
           leucogenys]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|301782105|ref|XP_002926465.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Ailuropoda
           melanoleuca]
 gi|281346983|gb|EFB22567.1| hypothetical protein PANDA_016115 [Ailuropoda melanoleuca]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|156353243|ref|XP_001622982.1| predicted protein [Nematostella vectensis]
 gi|82621537|gb|ABB86440.1| NK7-ANTP class homeobox protein, partial [Nematostella vectensis]
 gi|110339129|gb|ABG67828.1| NK-like 20, partial [Nematostella vectensis]
 gi|156209623|gb|EDO30882.1| predicted protein [Nematostella vectensis]
          Length = 60

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 31/36 (86%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          KYL+ ++R +++ LLN+TE Q+K WFQNRRTKWKKQ
Sbjct: 24 KYLTATERSDMASLLNVTETQVKIWFQNRRTKWKKQ 59



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          +++ LLN+TE Q+K WFQNRRTKWK
Sbjct: 33 DMASLLNVTETQVKIWFQNRRTKWK 57


>gi|73998274|ref|XP_850598.1| PREDICTED: T-cell leukemia homeobox protein 1 isoform 2 [Canis
           lupus familiaris]
          Length = 337

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 231 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 270



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 241 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 290

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 291 QKSLAQPLPADPLCVHN 307


>gi|403262508|ref|XP_003923628.1| PREDICTED: brain-specific homeobox protein homolog [Saimiri
           boliviensis boliviensis]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|327279085|ref|XP_003224289.1| PREDICTED: t-cell leukemia homeobox protein 1-like [Anolis
           carolinensis]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 205 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 256


>gi|269931711|gb|ACZ54375.1| homeobox A3 [Monodelphis domestica]
          Length = 150

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
          + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +    +G   P  
Sbjct: 24 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS----SGGQSPSR 79

Query: 87 GPLIFGA 93
           P+  GA
Sbjct: 80 SPVPPGA 86



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 35 VEMANLLNLTERQIKIWFQNRRMKYK 60


>gi|319429929|gb|ADV57238.1| homeodomain protein HoxB3a [Elopichthys bambusa]
          Length = 229

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK
Sbjct: 16 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSK 58



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 27 VEMANLLNLTERQIKIWFQNRRMKYK 52


>gi|301756570|ref|XP_002914127.1| PREDICTED: LOW QUALITY PROTEIN: brain-specific homeobox protein
           homolog [Ailuropoda melanoleuca]
          Length = 233

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|149717011|ref|XP_001503420.1| PREDICTED: brain-specific homeobox protein homolog [Equus caballus]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|1170433|sp|P43345.1|TLX1_MOUSE RecName: Full=T-cell leukemia homeobox protein 1; AltName:
           Full=Homeobox TLX-1; AltName: Full=Homeobox protein
           Hox-11
 gi|2143478|pir||I57032 gene Tlx-1 protein - mouse
 gi|546380|gb|AAB30542.1| homeobox gene HOX11 homolog [Mus sp.]
          Length = 332

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 226 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 265



 Score = 42.7 bits (99), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 236 LAKALKMTDAQVKTWFQNRRTKWR 259


>gi|146217159|gb|ABQ10643.1| homeodomain protein Tlx [Platynereis dumerilii]
          Length = 325

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 213 KYLASAERSALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 252



 Score = 43.5 bits (101), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   S+ +
Sbjct: 223 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAASRFM 264


>gi|354503729|ref|XP_003513933.1| PREDICTED: brain-specific homeobox protein homolog [Cricetulus
           griseus]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|296216447|ref|XP_002754567.1| PREDICTED: brain-specific homeobox protein homolog [Callithrix
           jacchus]
          Length = 232

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|444722073|gb|ELW62777.1| Homeobox protein HMX1 [Tupaia chinensis]
          Length = 535

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 34/44 (77%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           + +YLS ++R  L+  L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 383 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELE 426



 Score = 39.3 bits (90), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 395 LAASLQLTETQVKIWFQNRRNKWK 418


>gi|403254000|ref|XP_003919771.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Saimiri
           boliviensis boliviensis]
          Length = 282

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 144 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 203



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 176 VELAVMLNLTERHIKIWFQNRRMKWK 201


>gi|345316130|ref|XP_001514461.2| PREDICTED: hypothetical protein LOC100083906, partial
           [Ornithorhynchus anatinus]
          Length = 420

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
           +YLSV +R+ L+  L+LTE Q+K W QNRRTKWKKQ        AH
Sbjct: 368 RYLSVCERLNLALSLSLTETQVKIWVQNRRTKWKKQNPGADTSRAH 413



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSK 36
           + L+  L+LTE Q+K W QNRRTKWK  +     S+
Sbjct: 376 LNLALSLSLTETQVKIWVQNRRTKWKKQNPGADTSR 411


>gi|91091014|ref|XP_975059.1| PREDICTED: similar to Drop CG1897-PA [Tribolium castaneum]
 gi|270013175|gb|EFA09623.1| hypothetical protein TcasGA2_TC011744 [Tribolium castaneum]
          Length = 292

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 49/85 (57%), Gaps = 16/85 (18%)

Query: 26  KYVDK-YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVA---HNRP 78
           K+ DK YLS+++R E S  L LTE Q+K WFQNRR K K+ Q A   KLKM +   H  P
Sbjct: 177 KFRDKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAELEKLKMASLSRHPHP 236

Query: 79  -------TGFYFPGGGPL--IFGAQ 94
                   G++ PG  PL  + GA+
Sbjct: 237 LYPHPALQGYFPPGAHPLASLLGAR 261



 Score = 37.4 bits (85), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL 43
           E S  L LTE Q+K WFQNRR K K +       +  EL KL
Sbjct: 191 EFSSSLRLTETQVKIWFQNRRAKAKRL-------QEAELEKL 225


>gi|395520088|ref|XP_003764170.1| PREDICTED: brain-specific homeobox protein homolog [Sarcophilus
           harrisii]
          Length = 233

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|344274831|ref|XP_003409218.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Loxodonta
           africana]
          Length = 330

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 224 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 263



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 283

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 284 QKSLAQPLPADPLCVHN 300


>gi|326923800|ref|XP_003208122.1| PREDICTED: t-cell leukemia homeobox protein 1-like [Meleagris
           gallopavo]
          Length = 297

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 191 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 230



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 201 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 242


>gi|256073030|ref|XP_002572836.1| nk homeobox protein [Schistosoma mansoni]
 gi|360042953|emb|CCD78363.1| putative nk homeobox protein [Schistosoma mansoni]
          Length = 542

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 8/65 (12%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--------VAHNRPT 79
           + +YLS S+R+ L++ L LTE Q+K WFQNRR KWK+Q+    K         +  +R T
Sbjct: 218 LKRYLSSSERVGLARTLQLTETQVKIWFQNRRNKWKRQVNVDYKSTNDSNSDDIISSRST 277

Query: 80  GFYFP 84
           G   P
Sbjct: 278 GIILP 282



 Score = 42.0 bits (97), Expect = 0.050,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L++ L LTE Q+K WFQNRR KWK
Sbjct: 230 LARTLQLTETQVKIWFQNRRNKWK 253


>gi|149730755|ref|XP_001500109.1| PREDICTED: homeobox protein Hox-D3 isoform 1 [Equus caballus]
          Length = 432

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|293341807|ref|XP_001065657.2| PREDICTED: NK1 transcription factor-related protein 1-like [Rattus
           norvegicus]
 gi|293353241|ref|XP_234082.5| PREDICTED: NK1 transcription factor-related protein 1-like [Rattus
           norvegicus]
          Length = 403

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 274 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 309



 Score = 41.6 bits (96), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 282 LNLALSLSLTETQVKIWFQNRRTKWK 307


>gi|300796715|ref|NP_001178986.1| T-cell leukemia homeobox protein 1 [Bos taurus]
 gi|296472778|tpg|DAA14893.1| TPA: T-cell leukemia, homeobox 1-like [Bos taurus]
          Length = 335

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 229 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 268



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 239 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 288

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 289 QKSLAQPLPADPLCVHN 305


>gi|46048823|ref|NP_990346.1| T-cell leukemia homeobox protein 1 [Gallus gallus]
 gi|6016284|sp|O93366.1|TLX1_CHICK RecName: Full=T-cell leukemia homeobox protein 1; AltName:
           Full=Homeobox TLX-1; AltName: Full=Homeobox protein
           Hox-11
 gi|3243071|gb|AAC23900.1| homeodomain protein [Gallus gallus]
          Length = 297

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 191 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 230



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 201 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 242


>gi|110750137|ref|XP_001119904.1| PREDICTED: t-cell leukemia homeobox protein 3-like [Apis
          mellifera]
          Length = 164

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 50 HKQKYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 92



 Score = 43.9 bits (102), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 63  LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 104


>gi|444518034|gb|ELV11921.1| Pancreas/duodenum homeobox protein 1 [Tupaia chinensis]
          Length = 263

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|71995852|ref|NP_001021797.1| Protein CEH-9 [Caenorhabditis elegans]
 gi|51338785|sp|P56407.2|HM09_CAEEL RecName: Full=Homeobox protein ceh-9
 gi|351063713|emb|CCD71938.1| Protein CEH-9 [Caenorhabditis elegans]
          Length = 147

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           KYLS S R EL+K L++TE Q+K WFQNRRTKWKK
Sbjct: 93  KYLSSSDRSELAKRLDVTETQVKIWFQNRRTKWKK 127



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 24/28 (85%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
           EL+K L++TE Q+K WFQNRRTKWK ++
Sbjct: 102 ELAKRLDVTETQVKIWFQNRRTKWKKIE 129


>gi|291383781|ref|XP_002708383.1| PREDICTED: brain specific homeobox [Oryctolagus cuniculus]
          Length = 235

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|224052711|ref|XP_002196228.1| PREDICTED: T-cell leukemia homeobox protein 1 [Taeniopygia guttata]
          Length = 297

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 191 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 230



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 201 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 242


>gi|126273248|ref|XP_001369881.1| PREDICTED: t-cell leukemia homeobox protein 1-like [Monodelphis
           domestica]
          Length = 327

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 221 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 260



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 231 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------MQLQQEAF 280

Query: 63  KKQLASKLK---MVAHN 76
           +K LA  L+   +  HN
Sbjct: 281 QKSLAQPLQADPLCVHN 297


>gi|161353498|ref|NP_705937.2| T-cell leukemia homeobox protein 2 [Danio rerio]
 gi|118763878|gb|AAI28815.1| Tlx3a protein [Danio rerio]
          Length = 301

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 202 HRQKYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 256


>gi|15809627|gb|AAK98790.1| T-cell leukemia associated homeodomain protein [Danio rerio]
          Length = 301

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 202 HRQKYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 256


>gi|232583|gb|AAB19293.1| HOX11 homeodomain [Homo sapiens]
          Length = 330

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 221 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 263



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 275


>gi|402852497|ref|XP_003890957.1| PREDICTED: LOW QUALITY PROTEIN: NK1 transcription factor-related
           protein 1-like [Papio anubis]
          Length = 411

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 282 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 317



 Score = 41.6 bits (96), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 290 LNLALSLSLTETQVKIWFQNRRTKWK 315


>gi|326486605|gb|ADZ76360.1| homeodomain protein HoxA2b [Mylopharyngodon piceus]
          Length = 272

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 121 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 180



 Score = 39.7 bits (91), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 132 VEIAALLDLTERQVKVWFQNRRMKHK 157


>gi|297465046|ref|XP_002703632.1| PREDICTED: homeobox protein Hox-D3 [Bos taurus]
 gi|297471594|ref|XP_002685351.1| PREDICTED: homeobox protein Hox-D3 [Bos taurus]
 gi|296490672|tpg|DAA32785.1| TPA: homeobox D3-like [Bos taurus]
          Length = 434

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 216 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 266



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 227 VEMANLLNLTERQIKIWFQNRRMKYK 252


>gi|11276073|ref|NP_068701.1| T-cell leukemia homeobox protein 1 [Mus musculus]
 gi|6580606|emb|CAB63267.1| transcription factor [Mus musculus]
 gi|17390572|gb|AAH18246.1| T-cell leukemia, homeobox 1 [Mus musculus]
 gi|148710003|gb|EDL41949.1| T-cell leukemia, homeobox 1 [Mus musculus]
          Length = 333

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 227 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 266



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 237 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 286

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 287 QKSLAQPLPADPLCVHN 303


>gi|403258696|ref|XP_003921887.1| PREDICTED: homeobox protein Hox-D3 [Saimiri boliviensis
           boliviensis]
          Length = 432

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|441600293|ref|XP_004087599.1| PREDICTED: T-cell leukemia homeobox protein 1 [Nomascus leucogenys]
          Length = 328

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 219 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 261



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 232 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 281

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 282 QKSLAQPLPADPLCVHN 298


>gi|188528951|ref|NP_001120901.1| homeobox A3 [Xenopus (Silurana) tropicalis]
 gi|183985812|gb|AAI66398.1| hoxa3 protein [Xenopus (Silurana) tropicalis]
          Length = 406

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 184 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKSMMTS 231



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 195 VEMANLLNLTERQIKIWFQNRRMKYK 220


>gi|395848409|ref|XP_003796843.1| PREDICTED: brain-specific homeobox protein homolog [Otolemur
           garnettii]
          Length = 233

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 131 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 169



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 141 VELATALSLSETQVKTWFQNRRMKHK 166


>gi|326921891|ref|XP_003207187.1| PREDICTED: homeobox protein Hox-A3-like [Meleagris gallopavo]
          Length = 413

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 193 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 240



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLTERQIKIWFQNRRMKYK 229


>gi|410975944|ref|XP_003994387.1| PREDICTED: T-cell leukemia homeobox protein 1 [Felis catus]
          Length = 311

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 202 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 264

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 265 QKSLAQPLPADPLCVHN 281


>gi|395850161|ref|XP_003797666.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Otolemur
           garnettii]
          Length = 282

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 43.1 bits (100), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|326486617|gb|ADZ76366.1| homeodomain protein HoxA2b [Culter alburnus]
          Length = 278

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 127 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 186



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 138 VEIAALLDLTERQVKVWFQNRRMKHK 163


>gi|339240667|ref|XP_003376259.1| homeobox protein HMX1 [Trichinella spiralis]
 gi|316975037|gb|EFV58496.1| homeobox protein HMX1 [Trichinella spiralis]
          Length = 327

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 8/60 (13%)

Query: 13  QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
           Q++T F  +R        YLS ++R  L+  L LTE Q+K WFQNRR KWK+Q+ + L++
Sbjct: 196 QLETTFDAKR--------YLSSAERANLANSLRLTETQVKIWFQNRRNKWKRQMVADLEV 247



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK---YVDKYLSVSKRMELSKLLNLTEVQ---IKTWFQ 56
           L+  L LTE Q+K WFQNRR KWK     D  +S   +M  +   N T V     +  F 
Sbjct: 215 LANSLRLTETQVKIWFQNRRNKWKRQMVADLEVSSLAKMNPNFGNNSTPVSSSVSRIIFD 274

Query: 57  NRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
            +RT   +   S+ K+     P   Y PGG  L
Sbjct: 275 EQRTGCTEGRKSQSKIPLS--PFSLYCPGGSNL 305


>gi|22086278|gb|AAM90623.1|AF398518_1 T-cell leukemia associated homeodomain protein Tlx3a [Danio rerio]
          Length = 301

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 202 HRQKYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 256


>gi|6679269|ref|NP_032840.1| pancreas/duodenum homeobox protein 1 [Mus musculus]
 gi|1708541|sp|P52946.1|PDX1_MOUSE RecName: Full=Pancreas/duodenum homeobox protein 1; AltName:
           Full=Insulin promoter factor 1; Short=IPF-1; AltName:
           Full=Islet/duodenum homeobox 1; Short=IDX-1; AltName:
           Full=Somatostatin-transactivating factor 1; Short=STF-1
 gi|414679|emb|CAA52389.1| IPF1 [Mus musculus]
 gi|12860791|dbj|BAB32045.1| unnamed protein product [Mus musculus]
 gi|73695366|gb|AAI03583.1| Pancreatic and duodenal homeobox 1 [Mus musculus]
 gi|73695390|gb|AAI03582.1| Pancreatic and duodenal homeobox 1 [Mus musculus]
 gi|73695436|gb|AAI03573.1| Pancreatic and duodenal homeobox 1 [Mus musculus]
 gi|111494175|gb|AAI05643.1| Pancreatic and duodenal homeobox 1 [Mus musculus]
 gi|148673882|gb|EDL05829.1| insulin promoter factor 1, homeodomain transcription factor [Mus
           musculus]
          Length = 284

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 146 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 205



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 178 VELAVMLNLTERHIKIWFQNRRMKWK 203


>gi|426245666|ref|XP_004016627.1| PREDICTED: brain-specific homeobox protein homolog [Ovis aries]
          Length = 255

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 128 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 166



 Score = 39.7 bits (91), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 138 VELATALSLSETQVKTWFQNRRMKHK 163


>gi|296221042|ref|XP_002756582.1| PREDICTED: T-cell leukemia homeobox protein 1 [Callithrix jacchus]
          Length = 331

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 225 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 264



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 235 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 284

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 285 QKSLAQPLPADPLCVHN 301


>gi|291404677|ref|XP_002718710.1| PREDICTED: T-cell leukemia homeobox 1 [Oryctolagus cuniculus]
          Length = 335

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 229 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 268



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 239 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 288

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 289 QKSLAQPLPADPLCVHN 305


>gi|301787251|ref|XP_002929041.1| PREDICTED: homeobox protein Hox-D3-like [Ailuropoda melanoleuca]
 gi|281349083|gb|EFB24667.1| hypothetical protein PANDA_019124 [Ailuropoda melanoleuca]
          Length = 432

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|157821251|ref|NP_001102636.1| T-cell leukemia homeobox protein 1 [Rattus norvegicus]
 gi|149040265|gb|EDL94303.1| similar to transcription factor (predicted) [Rattus norvegicus]
          Length = 333

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 227 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 266



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 237 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 286

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 287 QKSLAQPLPADPLCVHN 303


>gi|426337803|ref|XP_004032886.1| PREDICTED: homeobox protein Hox-D3 [Gorilla gorilla gorilla]
          Length = 432

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|74004892|ref|XP_545539.2| PREDICTED: homeobox protein Hox-D3 [Canis lupus familiaris]
          Length = 431

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 213 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 263



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 224 VEMANLLNLTERQIKIWFQNRRMKYK 249


>gi|380023730|ref|XP_003695665.1| PREDICTED: brain-specific homeobox protein homolog [Apis florea]
          Length = 306

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKY----VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++         V +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 99  ELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTPERVELAAALHLSETQVKTWFQN 158

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 159 RRMKHKKQL 167



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 139 VELAAALHLSETQVKTWFQNRRMKHK 164


>gi|426365940|ref|XP_004050024.1| PREDICTED: T-cell leukemia homeobox protein 1 isoform 1 [Gorilla
           gorilla gorilla]
          Length = 335

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 226 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 268



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 239 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 288

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 289 QKSLAQPLPADPLCVHN 305


>gi|5031757|ref|NP_005512.1| T-cell leukemia homeobox protein 1 isoform 1 [Homo sapiens]
 gi|399982|sp|P31314.1|TLX1_HUMAN RecName: Full=T-cell leukemia homeobox protein 1; AltName:
           Full=Homeobox protein Hox-11; AltName:
           Full=Proto-oncogene TCL-3; AltName: Full=T-cell
           leukemia/lymphoma protein 3
 gi|184287|gb|AAA58662.1| homeobox protein [Homo sapiens]
 gi|387683|gb|AAA36719.1| homeobox protein [Homo sapiens]
 gi|119570163|gb|EAW49778.1| T-cell leukemia homeobox 1 [Homo sapiens]
 gi|208967927|dbj|BAG73802.1| T-cell leukemia homeobox 1 [synthetic construct]
          Length = 330

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 221 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 263



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 283

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 284 QKSLAQPLPADPLCVHN 300


>gi|397510296|ref|XP_003825535.1| PREDICTED: T-cell leukemia homeobox protein 1 [Pan paniscus]
          Length = 330

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 221 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 263



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 283

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 284 QKSLAQPLPADPLCVHN 300


>gi|348538511|ref|XP_003456734.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Oreochromis
           niloticus]
          Length = 299

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 194 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 236



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 207 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 248


>gi|402888723|ref|XP_003907701.1| PREDICTED: homeobox protein Hox-D3 [Papio anubis]
 gi|355564998|gb|EHH21487.1| hypothetical protein EGK_04567 [Macaca mulatta]
          Length = 432

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|148695231|gb|EDL27178.1| homeobox D3, isoform CRA_a [Mus musculus]
          Length = 273

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 55  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 105



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 66 VEMANLLNLTERQIKIWFQNRRMKYK 91


>gi|109090313|ref|XP_001109904.1| PREDICTED: t-cell leukemia homeobox protein 1-like isoform 1
           [Macaca mulatta]
          Length = 336

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 227 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 269



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 240 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 289

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 290 QKSLAQPLPADPLCVHN 306


>gi|45383083|ref|NP_989879.1| homeobox protein Hox-A3 [Gallus gallus]
 gi|363730026|ref|XP_003640749.1| PREDICTED: homeobox protein Hox-A3-like [Gallus gallus]
 gi|3201973|gb|AAC19377.1| homeodomain protein HOXD-3 [Gallus gallus]
          Length = 413

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 193 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 240



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLTERQIKIWFQNRRMKYK 229


>gi|3392912|emb|CAA08834.1| HOX11 protein [Homo sapiens]
          Length = 330

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 221 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 263



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 13/77 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L           Q ++  +
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL----------LQLQQEAF 283

Query: 63  KKQLASKL---KMVAHN 76
           +K LA  L    +  HN
Sbjct: 284 QKSLAQPLPADPLCVHN 300


>gi|6016289|sp|O55144.1|TLX3_MOUSE RecName: Full=T-cell leukemia homeobox protein 3; AltName:
           Full=Homeobox TLX-3; AltName: Full=Homeobox protein
           Hox-11L2; AltName: Full=Respiratory neuron homeobox
           protein
 gi|2959932|emb|CAA11551.1| HOX11L2 [Mus musculus]
          Length = 291

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWR 222


>gi|2959928|emb|CAA11550.1| HOX11L2 [Homo sapiens]
          Length = 291

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 42.7 bits (99), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWR 222


>gi|410900384|ref|XP_003963676.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Takifugu
           rubripes]
          Length = 298

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 196 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 235



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 206 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 247


>gi|397489126|ref|XP_003815586.1| PREDICTED: homeobox protein Hox-D3 [Pan paniscus]
          Length = 432

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|395732502|ref|XP_003776074.1| PREDICTED: homeobox protein Hox-D3 [Pongo abelii]
          Length = 432

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|351709859|gb|EHB12778.1| Homeobox protein Hox-D3 [Heterocephalus glaber]
          Length = 432

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|350425166|ref|XP_003494033.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Bombus
           impatiens]
          Length = 197

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 86  KYLASAERAALAKTLKMTDAQVKTWFQNRRTKWRRQTAEE 125



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 96  LAKTLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 137


>gi|348558571|ref|XP_003465091.1| PREDICTED: NK1 transcription factor-related protein 1-like [Cavia
           porcellus]
          Length = 388

 Score = 55.5 bits (132), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 261 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 296



 Score = 41.2 bits (95), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 269 LNLALSLSLTETQVKIWFQNRRTKWK 294


>gi|449268330|gb|EMC79199.1| Homeobox protein Hox-A3 [Columba livia]
          Length = 413

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 193 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 240



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLTERQIKIWFQNRRMKYK 229


>gi|158939061|sp|O93353.2|HXA3_CHICK RecName: Full=Homeobox protein Hox-A3; AltName: Full=Homeobox
           protein Hox-D3
 gi|31339376|dbj|BAC77105.1| homeobox protein Hoxa3 [Gallus gallus]
          Length = 413

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 193 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 240



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLTERQIKIWFQNRRMKYK 229


>gi|348585687|ref|XP_003478602.1| PREDICTED: homeobox protein Hox-D3-like [Cavia porcellus]
          Length = 432

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|326486609|gb|ADZ76362.1| homeodomain protein HoxA2b [Hypophthalmichthys molitrix]
          Length = 268

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 121 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 180



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 132 VEIAALLDLTERQVKVWFQNRRMKHK 157


>gi|321475842|gb|EFX86804.1| putative homeotic Antennapedia protein [Daphnia pulex]
          Length = 657

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 13  QIKTWFQNRRTKWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
           Q  T FQ    + ++  ++YL+  +R+E++  L LTE QIK WFQNRR KWKK+  +KL
Sbjct: 581 QTYTRFQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKENKAKL 639



 Score = 42.0 bits (97), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           +E++  L LTE QIK WFQNRR KWK  +K
Sbjct: 607 IEIAHALCLTERQIKIWFQNRRMKWKKENK 636


>gi|348514409|ref|XP_003444733.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Oreochromis
           niloticus]
          Length = 282

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 186 HRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLI 240


>gi|327261022|ref|XP_003215331.1| PREDICTED: t-cell leukemia homeobox protein 3-like [Anolis
           carolinensis]
          Length = 306

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 204 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 243



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 214 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 255


>gi|219880|dbj|BAA01891.1| homeodomain protein [Homo sapiens]
          Length = 416

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+
Sbjct: 198 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS 245



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 209 VEMANLLNLTERQIKIWFQNRRMKYK 234


>gi|344268818|ref|XP_003406253.1| PREDICTED: homeobox protein Hox-D3 [Loxodonta africana]
          Length = 430

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 212 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 262



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 223 VEMANLLNLTERQIKIWFQNRRMKYK 248


>gi|301614690|ref|XP_002936815.1| PREDICTED: t-cell leukemia homeobox protein 1-like isoform 2
           [Xenopus (Silurana) tropicalis]
          Length = 299

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 193 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 232



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 203 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 244


>gi|224045296|ref|XP_002194899.1| PREDICTED: homeobox protein Hox-A3 isoform 1 [Taeniopygia guttata]
          Length = 413

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 193 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 240



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 204 VEMANLLNLTERQIKIWFQNRRMKYK 229


>gi|18026212|gb|AAL25807.1| sec-combs reduced protein [Euprymna scolopes]
          Length = 100

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 2/50 (4%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
          + +KYL+  +R+E++  LNLTE QIK WFQNRR KWKK+   KL  +A N
Sbjct: 40 HYNKYLTRRRRIEIAHALNLTERQIKIWFQNRRMKWKKE--HKLSHIAKN 87



 Score = 46.2 bits (108), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
          +E++  LNLTE QIK WFQNRR KWK   K   ++K M +   L+
Sbjct: 51 IEIAHALNLTERQIKIWFQNRRMKWKKEHKLSHIAKNMNVCAPLD 95


>gi|397479335|ref|XP_003810979.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein 3
           [Pan paniscus]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|395837221|ref|XP_003791539.1| PREDICTED: homeobox protein Hox-D3 [Otolemur garnettii]
          Length = 432

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|380797987|gb|AFE70869.1| homeobox protein MSX-2, partial [Macaca mulatta]
          Length = 197

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  LNLTE Q+K WFQNRR K K+ Q A   KLKM A    P+ F   F
Sbjct: 95  QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 154

Query: 84  PGGGPL----IFGAQH 95
           P   PL    I+GA +
Sbjct: 155 PISSPLQAASIYGASY 170



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 104 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 132


>gi|344265259|ref|XP_003404702.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Loxodonta
           africana]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|335304101|ref|XP_003134109.2| PREDICTED: T-cell leukemia homeobox protein 3-like [Sus scrofa]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|301128903|emb|CBL59365.1| HoxD3 [Scyliorhinus canicula]
          Length = 394

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M
Sbjct: 179 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM 224



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 190 VEMANLLNLTERQIKIWFQNRRMKYK 215


>gi|254826778|ref|NP_064300.2| T-cell leukemia homeobox protein 3 [Mus musculus]
 gi|293339992|ref|XP_001064411.2| PREDICTED: T-cell leukemia homeobox protein 3 [Rattus norvegicus]
 gi|293351408|ref|XP_573065.2| PREDICTED: T-cell leukemia homeobox protein 3 [Rattus norvegicus]
 gi|348574959|ref|XP_003473257.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Cavia
           porcellus]
 gi|74202606|dbj|BAE24864.1| unnamed protein product [Mus musculus]
 gi|148691796|gb|EDL23743.1| T-cell leukemia, homeobox 3 [Mus musculus]
 gi|149052252|gb|EDM04069.1| similar to HOX11L2 (predicted), isoform CRA_a [Rattus norvegicus]
 gi|219518746|gb|AAI45632.1| T-cell leukemia, homeobox 3 [Mus musculus]
 gi|223461240|gb|AAI41309.1| Tlx3 protein [Mus musculus]
 gi|431918137|gb|ELK17365.1| T-cell leukemia homeobox protein 3 [Pteropus alecto]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|50355978|ref|NP_066305.2| T-cell leukemia homeobox protein 3 [Homo sapiens]
 gi|109079745|ref|XP_001095250.1| PREDICTED: t-cell leukemia homeobox protein 3 [Macaca mulatta]
 gi|291387812|ref|XP_002710422.1| PREDICTED: T-cell leukemia homeobox 3 [Oryctolagus cuniculus]
 gi|297676637|ref|XP_002816233.1| PREDICTED: T-cell leukemia homeobox protein 3 [Pongo abelii]
 gi|402873390|ref|XP_003900560.1| PREDICTED: T-cell leukemia homeobox protein 3 [Papio anubis]
 gi|115502468|sp|O43711.3|TLX3_HUMAN RecName: Full=T-cell leukemia homeobox protein 3; AltName:
           Full=Homeobox protein Hox-11L2
 gi|16878171|gb|AAH17291.1| T-cell leukemia homeobox 3 [Homo sapiens]
 gi|119581856|gb|EAW61452.1| T-cell leukemia homeobox 3 [Homo sapiens]
 gi|123984469|gb|ABM83580.1| T-cell leukemia homeobox 3 [synthetic construct]
 gi|123998435|gb|ABM86819.1| T-cell leukemia homeobox 3 [synthetic construct]
 gi|123998992|gb|ABM87084.1| T-cell leukemia homeobox 3 [synthetic construct]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|332822630|ref|XP_003311019.1| PREDICTED: T-cell leukemia homeobox protein 3 [Pan troglodytes]
          Length = 180

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 78  KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 117



 Score = 45.8 bits (107), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 88  LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 129


>gi|301614688|ref|XP_002936814.1| PREDICTED: t-cell leukemia homeobox protein 1-like isoform 1
           [Xenopus (Silurana) tropicalis]
          Length = 311

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 205 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 244



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 215 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 256


>gi|222478310|gb|ACM62732.1| homeodomain transcription factor protein HOX1 [Clytia
           hemisphaerica]
          Length = 301

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 39/53 (73%), Gaps = 1/53 (1%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK-LKMVAHNRP 78
           + +KYL+ ++R+E+S+ LNLTE QIK WFQNRR K K+++  K  ++  H+ P
Sbjct: 228 HFNKYLTRARRVEISQSLNLTEAQIKIWFQNRRMKHKREMKGKRFQLRKHDTP 280



 Score = 40.8 bits (94), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E+S+ LNLTE QIK WFQNRR K K
Sbjct: 239 VEISQSLNLTEAQIKIWFQNRRMKHK 264


>gi|426220825|ref|XP_004004612.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein Hox-D3 [Ovis
           aries]
          Length = 421

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 215 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 265



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 226 VEMANLLNLTERQIKIWFQNRRMKYK 251


>gi|42495382|gb|AAS17879.1| Msx1 protein [Ambystoma mexicanum]
          Length = 285

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 11/81 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 183 QYLSIAERAEFSGSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMMPPAFGI 240

Query: 82  YFPGGGPLIFGAQHGSPTAPY 102
            FP G P+   + +G P+ P+
Sbjct: 241 SFPLGSPVHAASLYG-PSGPF 260



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  L+LTE Q+K WFQNRR K K + +
Sbjct: 192 EFSGSLSLTETQVKIWFQNRRAKAKRLQE 220


>gi|345799373|ref|XP_546241.3| PREDICTED: T-cell leukemia homeobox protein 3 [Canis lupus
           familiaris]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|326486607|gb|ADZ76361.1| homeodomain protein HoxA2b [Ctenopharyngodon idella]
          Length = 209

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 58  HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 117



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 69 VEIAALLDLTERQVKVWFQNRRMKHK 94


>gi|262263018|gb|ACY39978.1| HoxD3 [Heterodontus francisci]
          Length = 394

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 33/46 (71%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   SK  M
Sbjct: 179 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM 224



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDK-----YLSVSKRMELSKLLN 45
           +E++ LLNLTE QIK WFQNRR K+K   K     +  V +  + S LLN
Sbjct: 190 VEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIMHSPVGQSPDRSPLLN 239


>gi|196016700|ref|XP_002118201.1| trox-2 homeobox transcription factor [Trichoplax adhaerens]
 gi|190579250|gb|EDV19350.1| trox-2 homeobox transcription factor [Trichoplax adhaerens]
          Length = 215

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           +YLS  +R+E++ +LNL+E Q+K WFQNRR KWKK   +KL    H+       PG  PL
Sbjct: 148 RYLSRLRRIEIANMLNLSEKQVKIWFQNRRVKWKKD--NKLDGQDHDENESKGSPGQYPL 205



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           +E++ +LNL+E Q+K WFQNRR KWK  +K
Sbjct: 156 IEIANMLNLSEKQVKIWFQNRRVKWKKDNK 185


>gi|147900079|ref|NP_001079216.1| T-cell leukemia homeobox 1 [Xenopus laevis]
 gi|10185814|gb|AAG14453.1|AF283694_1 homeobox protein XHox11 [Xenopus laevis]
          Length = 312

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 206 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 245



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 216 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 257


>gi|403290178|ref|XP_003936207.1| PREDICTED: T-cell leukemia homeobox protein 3 [Saimiri boliviensis
           boliviensis]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|396779|emb|CAA52159.1| sex combs reduced homeodomain protein homologue [Schistocerca
           gregaria]
          Length = 106

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 6/77 (7%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL+  +R+E++  L LTE QIK WFQNRR KWKK+     KM + +    +Y   G
Sbjct: 28  HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE----HKMASMSAGGNYYAGPG 83

Query: 87  GPLIFGAQHGSPTAPYF 103
           G L+     G P  P++
Sbjct: 84  GALV--PYPGYPAYPHY 98



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 24/35 (68%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
          +E++  L LTE QIK WFQNRR KWK   K  S+S
Sbjct: 39 IEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMS 73


>gi|440897928|gb|ELR49525.1| T-cell leukemia homeobox protein 3, partial [Bos grunniens mutus]
          Length = 294

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 192 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 231



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 202 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 243


>gi|313240548|emb|CBY32878.1| unnamed protein product [Oikopleura dioica]
          Length = 360

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
           KYLS S R+ L+  L LT++Q+KTW+QNRR KWKKQ  SKL
Sbjct: 243 KYLSTSDRVGLAAELGLTQLQVKTWYQNRRMKWKKQNRSKL 283



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LT++Q+KTW+QNRR KWK
Sbjct: 253 LAAELGLTQLQVKTWYQNRRMKWK 276


>gi|296011775|gb|ADG65542.1| pancreatic and duodenal homeobox 2 [Leucoraja erinacea]
          Length = 244

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/38 (65%), Positives = 30/38 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67
           KY+S  +R+EL+ LLNLTE  IK WFQNRR KWKK+ A
Sbjct: 147 KYISRPRRVELAALLNLTERHIKIWFQNRRMKWKKEEA 184



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 19/26 (73%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ LLNLTE  IK WFQNRR KWK
Sbjct: 155 VELAALLNLTERHIKIWFQNRRMKWK 180


>gi|149253843|ref|XP_001473685.1| PREDICTED: NK1 transcription factor-related protein 1 [Mus
           musculus]
 gi|407261262|ref|XP_003946207.1| PREDICTED: NK1 transcription factor-related protein 1 [Mus
           musculus]
          Length = 402

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 273 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 308



 Score = 41.2 bits (95), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 281 LNLALSLSLTETQVKIWFQNRRTKWK 306


>gi|402478630|ref|NP_001257967.1| homeobox protein Hox-D3 [Rattus norvegicus]
          Length = 432

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|432950908|ref|XP_004084668.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Oryzias
           latipes]
          Length = 323

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 219 KYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 258



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 229 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 270


>gi|433709|gb|AAA17047.1| homeobox protein [Gallus gallus]
          Length = 368

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           V +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+ +A+ L+
Sbjct: 219 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRHVAADLE 262



 Score = 40.0 bits (92), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L+LTE Q+K WFQNRR KWK
Sbjct: 231 LAASLHLTETQVKIWFQNRRNKWK 254


>gi|47215667|emb|CAG04751.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 282

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 187 HRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 229



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 200 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLI 241


>gi|432901808|ref|XP_004076957.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Oryzias
           latipes]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 186 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 199 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 240


>gi|83318945|emb|CAJ38810.1| Msx protein [Platynereis dumerilii]
          Length = 389

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 16/81 (19%)

Query: 10  TEVQIKTWFQNRRTKWKYVDK-------------YLSVSKRMELSKLLNLTEVQIKTWFQ 56
           T VQ++    NR+ +  +  +             YLS+++R E S  LNLTE Q+K WFQ
Sbjct: 251 TTVQLRKHKTNRKPRTPFTTQQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQ 310

Query: 57  NRRTKWKK-QLA--SKLKMVA 74
           NRR K K+ Q A   KLKM A
Sbjct: 311 NRRAKAKRLQEAELEKLKMAA 331



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  LNLTE Q+K WFQNRR K K + +
Sbjct: 293 EFSASLNLTETQVKIWFQNRRAKAKRLQE 321


>gi|410914471|ref|XP_003970711.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Takifugu
           rubripes]
          Length = 320

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 216 KYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 255



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 226 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 267


>gi|326486619|gb|ADZ76367.1| homeodomain protein HoxA2b [Opsariichthys bidens]
          Length = 264

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 122 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 181



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 133 VEIAALLDLTERQVKVWFQNRRMKHK 158


>gi|313230438|emb|CBY18653.1| unnamed protein product [Oikopleura dioica]
          Length = 335

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
           KYLS S R+ L+  L LT++Q+KTW+QNRR KWKKQ  SKL
Sbjct: 218 KYLSTSDRVGLAAELGLTQLQVKTWYQNRRMKWKKQNRSKL 258



 Score = 38.1 bits (87), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LT++Q+KTW+QNRR KWK
Sbjct: 228 LAAELGLTQLQVKTWYQNRRMKWK 251


>gi|487337|gb|AAB60683.1| homeobox containing protein [Mus musculus]
 gi|1398929|gb|AAC52779.1| Hoxd3 [Mus musculus]
 gi|1398931|gb|AAC52780.1| Hoxd3 [Mus musculus]
 gi|74210733|dbj|BAE23694.1| unnamed protein product [Mus musculus]
 gi|1090526|prf||2019256A Hox-D3 protein
          Length = 417

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 199 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 249



 Score = 44.7 bits (104), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 210 VEMANLLNLTERQIKIWFQNRRMKYK 235


>gi|395817065|ref|XP_003781996.1| PREDICTED: T-cell leukemia homeobox protein 3 [Otolemur garnettii]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|395520843|ref|XP_003764532.1| PREDICTED: pancreas/duodenum homeobox protein 1 [Sarcophilus
           harrisii]
          Length = 287

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 142 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 201



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 174 VELAVMLNLTERHIKIWFQNRRMKWK 199


>gi|327280446|ref|XP_003224963.1| PREDICTED: homeobox protein Hox-A3-like [Anolis carolinensis]
          Length = 429

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K  M +
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMMTS 258



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|410913781|ref|XP_003970367.1| PREDICTED: LOW QUALITY PROTEIN: T-cell leukemia homeobox protein
           3-like [Takifugu rubripes]
          Length = 283

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 187 HRQKYLASAERAXLAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 229



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 200 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLI 241


>gi|348511747|ref|XP_003443405.1| PREDICTED: T-cell leukemia homeobox protein 1-like [Oreochromis
           niloticus]
          Length = 315

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 219 KYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 258



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 229 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 270


>gi|119587942|gb|EAW67538.1| hCG1647980 [Homo sapiens]
          Length = 626

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 405 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 443



 Score = 39.7 bits (91), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 415 VELATALSLSETQVKTWFQNRRMKHK 440


>gi|19923391|ref|NP_008829.3| homeobox protein Hox-D3 [Homo sapiens]
 gi|224471887|sp|P31249.3|HXD3_HUMAN RecName: Full=Homeobox protein Hox-D3; AltName: Full=Homeobox
           protein Hox-4A
 gi|1869799|emb|CAA71102.1| HOXD3 [Homo sapiens]
 gi|13477301|gb|AAH05124.1| Homeobox D3 [Homo sapiens]
 gi|14250648|gb|AAH08789.1| Homeobox D3 [Homo sapiens]
 gi|119631490|gb|EAX11085.1| homeobox D3 [Homo sapiens]
 gi|123989966|gb|ABM83900.1| homeobox D3 [synthetic construct]
 gi|123999289|gb|ABM87221.1| homeobox D3 [synthetic construct]
 gi|208966506|dbj|BAG73267.1| homeobox D3 [synthetic construct]
 gi|208968519|dbj|BAG74098.1| homeobox D3 [synthetic construct]
          Length = 432

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHN 76
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS 261



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|25092682|ref|NP_739571.1| T-cell leukemia homeobox protein 1 [Danio rerio]
 gi|22086275|gb|AAM90622.1|AF398517_1 homeobox protein Hox11 [Danio rerio]
 gi|37606033|emb|CAE50907.1| T-cell leukemia, homeobox 1 [Danio rerio]
 gi|37606068|emb|CAE49441.1| T-cell leukemia, homeobox 1 [Danio rerio]
 gi|190336650|gb|AAI62115.1| T-cell leukemia, homeobox 1 [Danio rerio]
 gi|190340177|gb|AAI62486.1| T-cell leukemia, homeobox 1 [Danio rerio]
          Length = 301

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 199 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 238



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 209 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 250


>gi|126517502|ref|NP_034598.2| homeobox protein Hox-D3 [Mus musculus]
 gi|224471899|sp|P09027.4|HXD3_MOUSE RecName: Full=Homeobox protein Hox-D3; AltName: Full=Homeobox
           protein Hox-4.1; AltName: Full=Homeobox protein MH-19
 gi|74227447|dbj|BAE21791.1| unnamed protein product [Mus musculus]
 gi|148695232|gb|EDL27179.1| homeobox D3, isoform CRA_b [Mus musculus]
 gi|187950755|gb|AAI37719.1| Homeo box D3 [Mus musculus]
 gi|223459826|gb|AAI37717.1| Homeo box D3 [Mus musculus]
          Length = 433

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 215 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 265



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 226 VEMANLLNLTERQIKIWFQNRRMKYK 251


>gi|301775013|ref|XP_002922930.1| PREDICTED: t-cell leukemia homeobox protein 3-like [Ailuropoda
           melanoleuca]
          Length = 292

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 190 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 229



 Score = 45.4 bits (106), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 200 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 241


>gi|74096063|ref|NP_001027673.1| transcription factor [Ciona intestinalis]
 gi|12274849|emb|CAC22321.1| transcription factor [Ciona intestinalis]
          Length = 411

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
           +  +Y+S  +R+EL+ +LNLTE  IK WFQNRR KWKK  A+  K
Sbjct: 283 HFSRYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKDQAANSK 327



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 294 IELAAMLNLTERHIKIWFQNRRMKWK 319


>gi|432878320|ref|XP_004073299.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Oryzias
           latipes]
          Length = 282

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLI 240


>gi|354468531|ref|XP_003496706.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Cricetulus
           griseus]
 gi|344237266|gb|EGV93369.1| Pancreas/duodenum homeobox protein 1 [Cricetulus griseus]
          Length = 283

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 42.7 bits (99), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|194219608|ref|XP_001503176.2| PREDICTED: t-cell leukemia homeobox protein 3-like [Equus caballus]
          Length = 287

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 47.8 bits (112), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 14/85 (16%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+           Q +   +
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM----------LQLQHDAF 248

Query: 63  KKQLASKLK----MVAHNRPTGFYF 83
           +K L   ++     +AH+ P  FY 
Sbjct: 249 QKSLIESIQHDPLCLAHSFPLCFYI 273


>gi|156361303|ref|XP_001625457.1| predicted protein [Nematostella vectensis]
 gi|156212292|gb|EDO33357.1| predicted protein [Nematostella vectensis]
          Length = 59

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +KYL+ SKR +LSK L +TE Q+KTWFQNRRTKW+K+
Sbjct: 19 NKYLTESKREQLSKDLGMTETQVKTWFQNRRTKWRKK 55



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          +LSK L +TE Q+KTWFQNRRTKW+
Sbjct: 29 QLSKDLGMTETQVKTWFQNRRTKWR 53


>gi|443716432|gb|ELU07957.1| hypothetical protein CAPTEDRAFT_127720, partial [Capitella
          teleta]
          Length = 91

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 27/31 (87%)

Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
          DKYLSVSKRM+LS  L LTE QIKTWFQNRR
Sbjct: 36 DKYLSVSKRMDLSHSLGLTETQIKTWFQNRR 66



 Score = 38.1 bits (87), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/22 (77%), Positives = 18/22 (81%)

Query: 1  MELSKLLNLTEVQIKTWFQNRR 22
          M+LS  L LTE QIKTWFQNRR
Sbjct: 45 MDLSHSLGLTETQIKTWFQNRR 66


>gi|7248806|gb|AAF43677.1|AF223675_1 homeodomain protein Nkx-1.2T5.17 [Mus musculus]
          Length = 94

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 57 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 92



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          + L+  L+LTE Q+K WFQNRRTKWK
Sbjct: 65 LNLALSLSLTETQVKIWFQNRRTKWK 90


>gi|332209407|ref|XP_003253803.1| PREDICTED: homeobox protein Hox-D3 [Nomascus leucogenys]
          Length = 442

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 224 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 274



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 235 VEMANLLNLTERQIKIWFQNRRMKYK 260


>gi|291387848|ref|XP_002710436.1| PREDICTED: msh homeobox 1-like [Oryctolagus cuniculus]
          Length = 268

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 10/76 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A    P+GF   F
Sbjct: 166 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 225

Query: 84  PGGGPL----IFGAQH 95
           P   PL    ++GA +
Sbjct: 226 PINSPLQATSLYGASY 241



 Score = 38.1 bits (87), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  L+LTE Q+K WFQNRR K K + +
Sbjct: 175 EFSSSLSLTETQVKIWFQNRRAKAKRLQE 203


>gi|300793790|ref|NP_001180120.1| T-cell leukemia homeobox protein 3 [Bos taurus]
 gi|194687059|ref|XP_001789338.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Bos taurus]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|296475890|tpg|DAA18005.1| TPA: T-cell leukemia homeobox 3-like [Bos taurus]
          Length = 291

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 45.4 bits (106), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 240


>gi|255742476|gb|ACU32588.1| homeobox protein HoxD5 [Callorhinchus milii]
          Length = 249

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           + ++YL+  +R+E++  L LTE QIK WFQNRR KWKK   +KLK ++   P G + P
Sbjct: 194 HYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKD--NKLKSISITPPGGGFQP 249



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +E++  L LTE QIK WFQNRR KWK  +K  S+S
Sbjct: 205 IEIAHALCLTERQIKIWFQNRRMKWKKDNKLKSIS 239


>gi|326486615|gb|ADZ76365.1| homeodomain protein HoxA2b [Xenocypris argentea]
          Length = 240

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 127 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 186



 Score = 39.3 bits (90), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 138 VEIAALLDLTERQVKVWFQNRRMKHK 163


>gi|194745252|ref|XP_001955102.1| GF18604 [Drosophila ananassae]
 gi|190628139|gb|EDV43663.1| GF18604 [Drosophila ananassae]
          Length = 341

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 12/83 (14%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK------------LKMVAHNR 77
           KYL+ ++R  L++ L +T+ Q+KTWFQNRRTKW++Q A +            L + A   
Sbjct: 242 KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAI 301

Query: 78  PTGFYFPGGGPLIFGAQHGSPTA 100
             GF  P       G  +G+P A
Sbjct: 302 SKGFAPPSAPLSTQGGVNGAPLA 324



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L++ L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 252 LARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 293


>gi|403288101|ref|XP_003935253.1| PREDICTED: homeobox protein Hox-A3 [Saimiri boliviensis
           boliviensis]
          Length = 416

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 184 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 221



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 195 VEMANLLNLTERQIKIWFQNRRMKYK 220


>gi|82621613|gb|ABB86478.1| HLXg-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339093|gb|ABG67810.1| NK-like 2, partial [Nematostella vectensis]
          Length = 60

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 31/36 (86%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +YL+ +KR ELSK L +TE Q+KTWFQNRRTKW+K+
Sbjct: 24 RYLTETKRAELSKDLEMTETQVKTWFQNRRTKWRKE 59



 Score = 44.3 bits (103), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 19/25 (76%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          ELSK L +TE Q+KTWFQNRRTKW+
Sbjct: 33 ELSKDLEMTETQVKTWFQNRRTKWR 57


>gi|114581897|ref|XP_001153177.1| PREDICTED: homeobox protein Hox-D3 [Pan troglodytes]
          Length = 433

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 215 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 265



 Score = 44.7 bits (104), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 226 VEMANLLNLTERQIKIWFQNRRMKYK 251


>gi|14010239|gb|AAK51912.1|AF361328_1 Hox3 [Folsomia candida]
          Length = 225

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68
          + ++YL   +R+E++ LL+LTE QIK WFQNRR K+KK+L S
Sbjct: 26 HYNRYLCRPRRIEMASLLSLTERQIKIWFQNRRMKYKKELKS 67



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LL+LTE QIK WFQNRR K+K
Sbjct: 37 IEMASLLSLTERQIKIWFQNRRMKYK 62


>gi|444517764|gb|ELV11781.1| Homeobox protein Hox-B3 [Tupaia chinensis]
          Length = 233

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 14/84 (16%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   +K          G     G
Sbjct: 44  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK----------GLASSSG 93

Query: 87  GPLIFGAQHGSPTAPYFFSASMLD 110
           GP    +  GSP  P   +A  ++
Sbjct: 94  GP----SPAGSPPQPMQSTAGFMN 113



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 55 VEMANLLNLTERQIKIWFQNRRMKYK 80


>gi|1174303|gb|AAB35373.1| homeobox protein [Hirudo medicinalis]
          Length = 129

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 32/44 (72%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
          + DKY+S  +R+EL+  LNLTE  IK WFQNRR KWKK  + K+
Sbjct: 30 HYDKYISRPRRLELAASLNLTERHIKIWFQNRRMKWKKLESGKI 73



 Score = 42.4 bits (98), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWKYVD 29
          +EL+  LNLTE  IK WFQNRR KWK ++
Sbjct: 41 LELAASLNLTERHIKIWFQNRRMKWKKLE 69


>gi|14916593|sp|Q9IA21.1|HXA3_HETFR RecName: Full=Homeobox protein Hox-A3
 gi|7271830|gb|AAF44641.1|AF224262_3 HoxA3 [Heterodontus francisci]
          Length = 410

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   +K  + +    +G   P  
Sbjct: 188 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGMLTS----SGGQSPCR 243

Query: 87  GPLIFGAQHGSPTAPYFFSASMLDDSQSP 115
            P+   A  G   + +  + S   D  SP
Sbjct: 244 SPIPPSAAGGYANSMHSLATSAPYDPHSP 272



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 199 VEMANLLNLTERQIKIWFQNRRMKYK 224


>gi|313253|emb|CAA51975.1| homeobox containing protein [Mus musculus]
          Length = 411

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G      
Sbjct: 199 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAGQSPERS 255

Query: 87  GPLIFGAQH 95
            PL   A H
Sbjct: 256 PPLGGAAGH 264



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 210 VEMANLLNLTERQIKIWFQNRRMKYK 235


>gi|432950590|ref|XP_004084516.1| PREDICTED: brain-specific homeobox protein homolog [Oryzias
           latipes]
          Length = 230

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 122 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 160



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 132 VELATALSLSETQVKTWFQNRRMKHK 157


>gi|62859509|ref|NP_001015902.1| T-cell leukemia homeobox 3 [Xenopus (Silurana) tropicalis]
 gi|89268076|emb|CAJ83135.1| T-cell leukemia, homeobox 3 [Xenopus (Silurana) tropicalis]
          Length = 292

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 190 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 229



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 200 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 241


>gi|307212579|gb|EFN88294.1| T-cell leukemia homeobox protein 3 [Harpegnathos saltator]
          Length = 159

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 42 HKQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 84



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
          L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 55 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 96


>gi|307207018|gb|EFN84841.1| Brain-specific homeobox protein [Harpegnathos saltator]
          Length = 210

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           V +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 133 VQRYLSTPERVELAAALHLSETQVKTWFQNRRMKHKKQL 171



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +EL+  L+L+E Q+KTWFQNRR K K   + L+ S
Sbjct: 143 VELAAALHLSETQVKTWFQNRRMKHKKQLRKLNTS 177


>gi|297264383|ref|XP_001095080.2| PREDICTED: hypothetical protein LOC701064 [Macaca mulatta]
          Length = 3029

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27   YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
            + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 2145 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 2195



 Score = 51.2 bits (121), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           + YL+  +R+E+S  L LTE Q+K WFQNRR KWKK+
Sbjct: 560 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKE 596



 Score = 50.4 bits (119), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 27   YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
            + ++YL+  +R+E++  L L+E QIK WFQNRR KWKK
Sbjct: 1292 HFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 1329



 Score = 47.8 bits (112), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query: 27   YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
            + +KYL+ ++R+E++  L L + Q+K WFQNRR K KK+
Sbjct: 2950 HFNKYLTRARRIEIANCLQLNDTQVKIWFQNRRMKQKKR 2988



 Score = 43.9 bits (102), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1    MELSKLLNLTEVQIKTWFQNRRTKWK 26
            +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 2156 VEMANLLNLTERQIKIWFQNRRMKYK 2181



 Score = 42.0 bits (97), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E+S  L LTE Q+K WFQNRR KWK
Sbjct: 569 IEVSHALALTERQVKIWFQNRRMKWK 594



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 1    MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKR 37
            +E++  L L+E QIK WFQNRR KWK   K  +   R
Sbjct: 1303 IEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR 1339


>gi|260830242|ref|XP_002610070.1| brain specific homeobox protein [Branchiostoma floridae]
 gi|229295433|gb|EEN66080.1| brain specific homeobox protein [Branchiostoma floridae]
          Length = 204

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           KYLS  +RM+L+  LNLTE Q+KTWFQNRR K KK
Sbjct: 124 KYLSTPERMDLAAALNLTETQVKTWFQNRRMKHKK 158



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           M+L+  LNLTE Q+KTWFQNRR K K + +
Sbjct: 132 MDLAAALNLTETQVKTWFQNRRMKHKKLQR 161


>gi|11967765|emb|CAC19386.1| H6 subclass protein [Discocelis tigrina]
          Length = 122

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 33/42 (78%)

Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
          +YLS S+R  L+  L+LTE Q+K WFQNRR KWK+QLA+ ++
Sbjct: 24 RYLSSSERAGLAHALHLTETQVKIWFQNRRNKWKRQLAADIE 65



 Score = 39.7 bits (91), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 19/24 (79%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWK 26
          L+  L+LTE Q+K WFQNRR KWK
Sbjct: 34 LAHALHLTETQVKIWFQNRRNKWK 57


>gi|307172325|gb|EFN63813.1| T-cell leukemia homeobox protein 3 [Camponotus floridanus]
          Length = 167

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 50 HKQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 92



 Score = 43.5 bits (101), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 63  LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 104


>gi|195580267|ref|XP_002079974.1| GD21734 [Drosophila simulans]
 gi|194191983|gb|EDX05559.1| GD21734 [Drosophila simulans]
          Length = 429

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQL
Sbjct: 297 RYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQL 333



 Score = 40.4 bits (93), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 305 VELATALGLSETQVKTWFQNRRMKHK 330


>gi|170031936|ref|XP_001843839.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167871419|gb|EDS34802.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 145

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 17/88 (19%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK------------LKMVA 74
           +  KYL+ ++R  L++ L +T+ Q+KTWFQNRRTKW++Q A +            L + A
Sbjct: 44  HKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQA 103

Query: 75  HNRPTGFYFPGGGPLIFGAQHG-SPTAP 101
                GF    GGP    AQ   +P AP
Sbjct: 104 EALSKGF----GGPPPSAAQSATAPGAP 127



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 28/42 (66%)

Query: 3  LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
          L++ L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 57 LARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 98


>gi|56714079|gb|AAW24010.1| homeodomain protein BarX [Oikopleura dioica]
          Length = 319

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/41 (63%), Positives = 32/41 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
           KYLS S R+ L+  L LT++Q+KTW+QNRR KWKKQ  SKL
Sbjct: 202 KYLSTSDRVGLAAELGLTQLQVKTWYQNRRMKWKKQNRSKL 242



 Score = 38.1 bits (87), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 15/24 (62%), Positives = 20/24 (83%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LT++Q+KTW+QNRR KWK
Sbjct: 212 LAAELGLTQLQVKTWYQNRRMKWK 235


>gi|148233906|ref|NP_001079215.1| T-cell leukemia homeobox 3 [Xenopus laevis]
 gi|10185812|gb|AAG14452.1|AF283693_1 homeobox protein XHox11L2 [Xenopus laevis]
          Length = 292

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 189 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 228



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 199 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 240


>gi|395828483|ref|XP_003787407.1| PREDICTED: T-cell leukemia homeobox protein 1 [Otolemur garnettii]
          Length = 453

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 238 KYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 277



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 248 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 289


>gi|345479724|ref|XP_001601247.2| PREDICTED: barH-like 2 homeobox protein-like [Nasonia vitripennis]
          Length = 328

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRT---KWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57
           EL+ L +    + +T F +++    + ++   +YLS  +R+EL+  L+L+E Q+KTWFQN
Sbjct: 129 ELAALKHCRRRKARTVFSDQQLAGLEARFEAQRYLSTPERVELAAALHLSETQVKTWFQN 188

Query: 58  RRTKWKKQL 66
           RR K KKQL
Sbjct: 189 RRMKHKKQL 197



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 169 VELAAALHLSETQVKTWFQNRRMKHK 194


>gi|82621621|gb|ABB86482.1| HLXf-ANTP class homeobox protein, partial [Nematostella
          vectensis]
 gi|110339095|gb|ABG67811.1| NK-like 3, partial [Nematostella vectensis]
          Length = 60

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
          +KYL+ SKR +LSK L +TE Q+KTWFQNRRTKW+K+
Sbjct: 23 NKYLTESKREQLSKDLGMTETQVKTWFQNRRTKWRKK 59



 Score = 42.7 bits (99), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/25 (72%), Positives = 22/25 (88%)

Query: 2  ELSKLLNLTEVQIKTWFQNRRTKWK 26
          +LSK L +TE Q+KTWFQNRRTKW+
Sbjct: 33 QLSKDLGMTETQVKTWFQNRRTKWR 57


>gi|385654483|gb|AFI61984.1| Hox-B2a [Anguilla japonica]
          Length = 377

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q  +      ++  TG + P  
Sbjct: 169 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ--TTYHKEGNDSDTGGFEP-- 224

Query: 87  GPLIFGAQHGSP--TAPYFFSASMLDDSQS 114
              + GA   SP    P+  S S + +S+S
Sbjct: 225 ---MEGADAASPYSNQPFEASGSAVSESES 251



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKY 31
           +E++ LL+LTE Q+K WFQNRR K K    Y
Sbjct: 180 VEIAALLDLTERQVKVWFQNRRMKHKRQTTY 210


>gi|332692492|gb|AEE90172.1| Homeobox B2a [Anguilla anguilla]
          Length = 377

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 9/90 (10%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q  +      ++  TG + P  
Sbjct: 169 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ--TTYHKEGNDSDTGGFEP-- 224

Query: 87  GPLIFGAQHGSP--TAPYFFSASMLDDSQS 114
              + GA   SP    P+  S S + +S+S
Sbjct: 225 ---MEGADAASPYSNQPFEASGSAVSESES 251



 Score = 40.0 bits (92), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKY 31
           +E++ LL+LTE Q+K WFQNRR K K    Y
Sbjct: 180 VEIAALLDLTERQVKVWFQNRRMKHKRQTTY 210


>gi|254212179|gb|ACT65754.1| Hoxa3 [Leucoraja erinacea]
          Length = 411

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK   +K  + +    +G   P  
Sbjct: 189 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGMLTS----SGGQSPCR 244

Query: 87  GPLIFGAQHGSPTAPYFFSASMLDDSQSP 115
            P+   A  G   + +  + S   D  SP
Sbjct: 245 SPIPPSAAGGYANSMHPLATSAPYDPHSP 273



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 200 VEMANLLNLTERQIKIWFQNRRMKYK 225


>gi|326486613|gb|ADZ76364.1| homeodomain protein HoxA2b [Elopichthys bambusa]
          Length = 239

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 120 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 179



 Score = 39.3 bits (90), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 131 VEIAALLDLTERQVKVWFQNRRMKHK 156


>gi|165873663|gb|ABY67956.1| sex combs reduced hox protein [Capitella teleta]
          Length = 197

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL+  +R+E++  LNLTE QIK WFQNRR KWKK+   KL  +A ++        G
Sbjct: 124 HFNRYLTRRRRIEIAHSLNLTERQIKIWFQNRRMKWKKE--HKLAHLAKSQAQKLDL-HG 180

Query: 87  GPLIFGAQH 95
            P++    H
Sbjct: 181 APILHHHHH 189



 Score = 44.7 bits (104), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSK 36
           +E++  LNLTE QIK WFQNRR KWK   K   ++K
Sbjct: 135 IEIAHSLNLTERQIKIWFQNRRMKWKKEHKLAHLAK 170


>gi|198429109|ref|XP_002120788.1| PREDICTED: transcription factor protein [Ciona intestinalis]
          Length = 405

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 32/37 (86%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS   R+EL++LL L+++Q+KTW+QNRR KWKKQ+
Sbjct: 347 QYLSTPDRVELAELLGLSQLQVKTWYQNRRMKWKKQV 383



 Score = 43.1 bits (100), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 24/26 (92%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL++LL L+++Q+KTW+QNRR KWK
Sbjct: 355 VELAELLGLSQLQVKTWYQNRRMKWK 380


>gi|449484366|ref|XP_002192703.2| PREDICTED: pancreas/duodenum homeobox protein 1 [Taeniopygia
           guttata]
          Length = 217

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 13/84 (15%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 98  ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 157

Query: 66  LASKLKMVAHNRPTGFYFPGGGPL 89
              K      N P        G L
Sbjct: 158 EDKKRGAGNSNDPEQDCVVSSGEL 181



 Score = 42.4 bits (98), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 130 VELAVMLNLTERHIKIWFQNRRMKWK 155


>gi|403260184|ref|XP_003922561.1| PREDICTED: T-cell leukemia homeobox protein 1 [Saimiri boliviensis
           boliviensis]
          Length = 252

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 143 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 185



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 156 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 197


>gi|326486611|gb|ADZ76363.1| homeodomain protein HoxA2b [Squaliobarbus curriculus]
          Length = 219

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + +KYL   +R+E++ LL+LTE Q+K WFQNRR K K+Q   K       +P      GG
Sbjct: 108 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENHNGDGKPPSLEEAGG 167



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE Q+K WFQNRR K K
Sbjct: 119 VEIAALLDLTERQVKVWFQNRRMKHK 144


>gi|195345197|ref|XP_002039159.1| GM16987 [Drosophila sechellia]
 gi|194134289|gb|EDW55805.1| GM16987 [Drosophila sechellia]
          Length = 429

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQL
Sbjct: 297 RYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQL 333



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 305 VELATALGLSETQVKTWFQNRRMKHK 330


>gi|7322065|gb|AAB35375.2| homeobox protein [Hirudo medicinalis]
          Length = 127

 Score = 55.1 bits (131), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 32/44 (72%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL 70
          + DKY+S  +R+EL+  LNLTE  IK WFQNRR KW+K  + K+
Sbjct: 30 HYDKYISRPRRLELAASLNLTECHIKIWFQNRRMKWEKFESGKI 73



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1  MELSKLLNLTEVQIKTWFQNRRTKWK 26
          +EL+  LNLTE  IK WFQNRR KW+
Sbjct: 41 LELAASLNLTECHIKIWFQNRRMKWE 66


>gi|85816279|ref|NP_995728.2| brain-specific homeobox, isoform B [Drosophila melanogaster]
 gi|108935827|sp|Q04787.5|BSH_DROME RecName: Full=Brain-specific homeobox protein
 gi|66571264|gb|AAY51597.1| IP01040p [Drosophila melanogaster]
 gi|84795321|gb|AAS64721.2| brain-specific homeobox, isoform B [Drosophila melanogaster]
 gi|220943308|gb|ACL84197.1| bsh-PA [synthetic construct]
 gi|220953356|gb|ACL89221.1| bsh-PA [synthetic construct]
          Length = 429

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQL
Sbjct: 297 RYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQL 333



 Score = 40.4 bits (93), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 305 VELATALGLSETQVKTWFQNRRMKHK 330


>gi|432851987|ref|XP_004067139.1| PREDICTED: uncharacterized protein LOC101159569 isoform 1 [Oryzias
           latipes]
          Length = 333

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           ++KYLS  KR E++  L LTE Q+K WFQNRR KWK+   +K +  A N+       GG
Sbjct: 172 LNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRKAKEQAAASNQVESERLRGG 230



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E++  L LTE Q+K WFQNRR KWK
Sbjct: 183 EVATSLMLTETQVKIWFQNRRMKWK 207


>gi|281339589|gb|EFB15173.1| hypothetical protein PANDA_011967 [Ailuropoda melanoleuca]
          Length = 278

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 176 KYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 215



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + S+L+
Sbjct: 186 LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQASRLM 227


>gi|301128901|emb|CBL59363.1| HoxD5 [Scyliorhinus canicula]
          Length = 252

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 2/58 (3%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFP 84
           + ++YL+  +R+E++  L LTE QIK WFQNRR KWKK   +KLK +  + P G + P
Sbjct: 197 HYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKD--NKLKSINVSPPAGGFQP 252



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           +E++  L LTE QIK WFQNRR KWK  +K  S++
Sbjct: 208 IEIAHALCLTERQIKIWFQNRRMKWKKDNKLKSIN 242


>gi|270014052|gb|EFA10500.1| hypothetical protein TcasGA2_TC012748 [Tribolium castaneum]
          Length = 232

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 26  KYVDK-YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN--RPT 79
           K+ DK YLS+++R E S  L LTE Q+K WFQNRR K K+ Q A   KL++ A     P+
Sbjct: 133 KFRDKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAELEKLRLSARPLLPPS 192

Query: 80  GFYFPGGGP 88
              FPGG P
Sbjct: 193 FGIFPGGAP 201



 Score = 40.0 bits (92), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61
           E S  L LTE Q+K WFQNRR K K +       +  EL KL       +   F      
Sbjct: 147 EFSSSLRLTETQVKIWFQNRRAKAKRL-------QEAELEKLRLSARPLLPPSFGIFPGG 199

Query: 62  WKKQLASKLKMVAHNRPTGFYFPGG 86
               ++  L  +AH RP  F FPG 
Sbjct: 200 APPLVSPFLAAMAH-RPPHFAFPGA 223


>gi|426355738|ref|XP_004045265.1| PREDICTED: homeobox protein Hox-A3 isoform 1 [Gorilla gorilla
           gorilla]
 gi|426355740|ref|XP_004045266.1| PREDICTED: homeobox protein Hox-A3 isoform 2 [Gorilla gorilla
           gorilla]
          Length = 443

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|338716462|ref|XP_003363458.1| PREDICTED: LOW QUALITY PROTEIN: t-cell leukemia homeobox protein
           1-like [Equus caballus]
          Length = 217

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 108 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 150



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 121 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 162


>gi|194879291|ref|XP_001974211.1| GG21608 [Drosophila erecta]
 gi|190657398|gb|EDV54611.1| GG21608 [Drosophila erecta]
          Length = 429

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQL
Sbjct: 297 RYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQL 333



 Score = 40.4 bits (93), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 305 VELATALGLSETQVKTWFQNRRMKHK 330


>gi|1139527|dbj|BAA11574.1| Msx1 protein [Ambystoma mexicanum]
          Length = 229

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 11/81 (13%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT-----GF 81
           +YLS+++R E S  L+LTE Q+K WFQNRR K K+ Q A   KLKM A  +P      G 
Sbjct: 127 QYLSIAERAEFSGSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMMPPAFGI 184

Query: 82  YFPGGGPLIFGAQHGSPTAPY 102
            FP G P+   + +G P+ P+
Sbjct: 185 SFPLGSPVHAASLYG-PSGPF 204



 Score = 37.7 bits (86), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
           E S  L+LTE Q+K WFQNRR K K + +
Sbjct: 136 EFSGSLSLTETQVKIWFQNRRAKAKRLQE 164


>gi|157018|gb|AAB59219.1| brain-specific homeobox protein [Drosophila melanogaster]
          Length = 226

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 30/38 (78%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67
           +YLS  +R+EL+  L L+E Q+KTWFQNRR K KKQLA
Sbjct: 155 RYLSPPERVELATALGLSETQVKTWFQNRRMKHKKQLA 192



 Score = 40.0 bits (92), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 20/26 (76%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L L+E Q+KTWFQNRR K K
Sbjct: 163 VELATALGLSETQVKTWFQNRRMKHK 188


>gi|118344030|ref|NP_001071839.1| transcription factor protein [Ciona intestinalis]
 gi|70571378|dbj|BAE06734.1| transcription factor protein [Ciona intestinalis]
          Length = 476

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           KYL+ S+R  L+K L +T+ Q+KTWFQNRRTKW++Q
Sbjct: 385 KYLASSERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 420



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
           L+K L +T+ Q+KTWFQNRRTKW+        ++R    +L+N
Sbjct: 395 LAKSLKMTDAQVKTWFQNRRTKWRRQTTEEREAERQAAQRLIN 437


>gi|410952520|ref|XP_003982927.1| PREDICTED: homeobox protein Hox-A3 isoform 1 [Felis catus]
 gi|410952522|ref|XP_003982928.1| PREDICTED: homeobox protein Hox-A3 isoform 2 [Felis catus]
          Length = 441

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|432920094|ref|XP_004079835.1| PREDICTED: homeobox protein HMX1-like [Oryzias latipes]
 gi|15637265|gb|AAL04487.1|AF365973_1 transcription factor Nkx5-3 [Oryzias latipes]
          Length = 255

 Score = 54.7 bits (130), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 13/75 (17%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPL 89
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+Q+ + ++              GG L
Sbjct: 148 RYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQITADME-------------AGGAL 194

Query: 90  IFGAQHGSPTAPYFF 104
           +  A H     P  +
Sbjct: 195 VPFASHRVVRVPVLY 209



 Score = 40.0 bits (92), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 158 LAASLQLTETQVKIWFQNRRNKWK 181


>gi|553929|gb|AAA37846.1| homeobox mh23-related protein, partial [Mus musculus]
          Length = 186

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G      
Sbjct: 64  HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAGQSPERS 120

Query: 87  GPLIFGAQH 95
            PL   A H
Sbjct: 121 PPLGGAAGH 129



 Score = 43.5 bits (101), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 75  VEMANLLNLTERQIKIWFQNRRMKYK 100


>gi|297680786|ref|XP_002818149.1| PREDICTED: homeobox protein Hox-A3 [Pongo abelii]
          Length = 443

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|443688862|gb|ELT91422.1| hypothetical protein CAPTEDRAFT_222072 [Capitella teleta]
          Length = 364

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 220 HRQKYLASAERSALAKGLKMTDAQVKTWFQNRRTKWRRQTAEE 262



 Score = 42.4 bits (98), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 233 LAKGLKMTDAQVKTWFQNRRTKWR 256


>gi|299473915|gb|ADJ18240.1| Xlox protein [Gibbula varia]
          Length = 333

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 13/62 (20%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK 
Sbjct: 181 ENKRTRTAYTRGQLLELEKEFHFNKYISRPRRIELAAMLNLTERHIKIWFQNRRMKWKKD 240

Query: 66  LA 67
            A
Sbjct: 241 EA 242



 Score = 43.5 bits (101), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 213 IELAAMLNLTERHIKIWFQNRRMKWK 238


>gi|259013319|ref|NP_001158453.1| T-cell leukemia homeobox protein [Saccoglossus kowalevskii]
 gi|197320529|gb|ACH68426.1| T-cell leukemia homeobox protein [Saccoglossus kowalevskii]
          Length = 285

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 168 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 210



 Score = 42.4 bits (98), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 21/24 (87%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 181 LAKALKMTDAQVKTWFQNRRTKWR 204


>gi|432851989|ref|XP_004067140.1| PREDICTED: uncharacterized protein LOC101159569 isoform 2 [Oryzias
           latipes]
          Length = 342

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
           ++KYLS  KR E++  L LTE Q+K WFQNRR KWK+   +K +  A N+       GG
Sbjct: 181 LNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRKAKEQAAASNQVESERLRGG 239



 Score = 39.7 bits (91), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWK 26
           E++  L LTE Q+K WFQNRR KWK
Sbjct: 192 EVATSLMLTETQVKIWFQNRRMKWK 216


>gi|30585409|gb|AAP36977.1| Homo sapiens homeo box A3 [synthetic construct]
 gi|61370826|gb|AAX43558.1| homeobox A3 [synthetic construct]
 gi|61370831|gb|AAX43559.1| homeobox A3 [synthetic construct]
          Length = 444

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|348543451|ref|XP_003459197.1| PREDICTED: homeobox protein HMX3-like [Oreochromis niloticus]
          Length = 326

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
           +YLS S+R  L+  L LTE Q+K WFQNRR KWK+Q+ + ++  +   P
Sbjct: 215 RYLSSSERAGLAASLQLTETQVKIWFQNRRNKWKRQITADIEASSATAP 263



 Score = 39.7 bits (91), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWK 26
           L+  L LTE Q+K WFQNRR KWK
Sbjct: 225 LAASLQLTETQVKIWFQNRRNKWK 248


>gi|47227525|emb|CAG04673.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 224

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 120 KYLASAERATLAKALKMTDAQVKTWFQNRRTKWRRQTAEE 159



 Score = 44.3 bits (103), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + ++L+
Sbjct: 130 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRLM 171


>gi|395532696|ref|XP_003768404.1| PREDICTED: homeobox protein Hox-B3 [Sarcophilus harrisii]
          Length = 409

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK   SK
Sbjct: 186 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSK 228



 Score = 43.5 bits (101), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 197 VEMANLLNLSERQIKIWFQNRRMKYK 222


>gi|444723479|gb|ELW64134.1| Homeobox protein Hox-D3 [Tupaia chinensis]
          Length = 282

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 3/54 (5%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK    K K + H+ P G
Sbjct: 214 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKAKGILHS-PAG 264



 Score = 43.9 bits (102), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYK 250


>gi|359754096|gb|AEV59518.1| HOXB3 [Macropus eugenii]
          Length = 429

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK   SK
Sbjct: 206 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSK 248



 Score = 43.1 bits (100), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 217 VEMANLLNLSERQIKIWFQNRRMKYK 242


>gi|332018348|gb|EGI58953.1| T-cell leukemia homeobox protein 3 [Acromyrmex echinatior]
          Length = 163

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
          +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 48 HKQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 90



 Score = 43.1 bits (100), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 61  LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 102


>gi|344270552|ref|XP_003407108.1| PREDICTED: homeobox protein Hox-A3 [Loxodonta africana]
          Length = 441

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|126327595|ref|XP_001376171.1| PREDICTED: pancreas/duodenum homeobox protein 1-like [Monodelphis
           domestica]
          Length = 290

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 13/60 (21%)

Query: 19  QNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +N+RT+  Y              +KY+S  +R+EL+ +LNLTE  IK WFQNRR KWKK+
Sbjct: 145 ENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204



 Score = 42.7 bits (99), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+ +LNLTE  IK WFQNRR KWK
Sbjct: 177 VELAVMLNLTERHIKIWFQNRRMKWK 202


>gi|157634|gb|AAA28616.1| regulatory DNA binding protein, partial [Drosophila melanogaster]
          Length = 129

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/36 (66%), Positives = 30/36 (83%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
           +YLSV +R+ L+  L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 72  RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 107



 Score = 40.4 bits (93), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
           + L+  L+LTE Q+K WFQNRRTKWK  +  + V+
Sbjct: 80  LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 114


>gi|184185534|gb|ACC68935.1| homeobox A3 isoform a (predicted) [Rhinolophus ferrumequinum]
          Length = 443

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 30/38 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
           + ++YL   +R+E++ LLNLTE QIK WFQNRR K+KK
Sbjct: 211 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 248



 Score = 45.1 bits (105), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNLTE QIK WFQNRR K+K
Sbjct: 222 VEMANLLNLTERQIKIWFQNRRMKYK 247


>gi|126308240|ref|XP_001367096.1| PREDICTED: homeobox protein Hox-B3 isoform 1 [Monodelphis
           domestica]
          Length = 430

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK   SK
Sbjct: 207 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSK 249



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 218 VEMANLLNLSERQIKIWFQNRRMKYK 243


>gi|395502287|ref|XP_003755513.1| PREDICTED: T-cell leukemia homeobox protein 1 [Sarcophilus
           harrisii]
          Length = 215

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 33/43 (76%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           +  KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 106 HRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWRRQTAEE 148



 Score = 43.9 bits (102), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R + +++L
Sbjct: 119 LAKALKMTDAQVKTWFQNRRTKWRRQTAEEREAERQQANRIL 160


>gi|334323082|ref|XP_003340340.1| PREDICTED: homeobox protein Hox-B3 isoform 2 [Monodelphis
           domestica]
          Length = 405

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 32/43 (74%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
           + ++YL   +R+E++ LLNL+E QIK WFQNRR K+KK   SK
Sbjct: 182 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSK 224



 Score = 43.1 bits (100), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LLNL+E QIK WFQNRR K+K
Sbjct: 193 VEMANLLNLSERQIKIWFQNRRMKYK 218


>gi|125489402|gb|ABN42910.1| homeodomain transcription factor Hox3 [Folsomia candida]
 gi|125489404|gb|ABN42911.1| homeodomain transcription factor Hox3 [Folsomia candida]
          Length = 534

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68
           + ++YL   +R+E++ LL+LTE QIK WFQNRR K+KK+L S
Sbjct: 185 HYNRYLCRPRRIEMASLLSLTERQIKIWFQNRRMKYKKELKS 226



 Score = 41.6 bits (96), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 22/26 (84%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +E++ LL+LTE QIK WFQNRR K+K
Sbjct: 196 IEMASLLSLTERQIKIWFQNRRMKYK 221


>gi|74054254|gb|AAZ95509.1| Xlox protein [Capitella teleta]
          Length = 278

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 13/75 (17%)

Query: 8   NLTEVQIKTWFQNRRTKWKYV-------------DKYLSVSKRMELSKLLNLTEVQIKTW 54
           N +    +T+ +N+RT+  Y              ++Y++  +R+EL+  LNLTE  IK W
Sbjct: 151 NWSGANFQTFSENKRTRTAYTRAQLLELEKEFHFNRYITRPRRVELAAHLNLTEQHIKIW 210

Query: 55  FQNRRTKWKKQLASK 69
           FQNRR KWKK +  K
Sbjct: 211 FQNRRMKWKKDVDKK 225



 Score = 42.7 bits (99), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWKY-VDK 30
           +EL+  LNLTE  IK WFQNRR KWK  VDK
Sbjct: 194 VELAAHLNLTEQHIKIWFQNRRMKWKKDVDK 224


>gi|390361018|ref|XP_798061.3| PREDICTED: uncharacterized protein LOC593496 [Strongylocentrotus
           purpuratus]
          Length = 324

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%)

Query: 30  KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
           KYLS   R++L++ L L+++Q+KTW+QNRR KWKKQ+    +     +P G
Sbjct: 197 KYLSTPDRLDLAETLGLSQLQVKTWYQNRRMKWKKQVMQGGRQEPPTKPKG 247



 Score = 40.8 bits (94), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 23/26 (88%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           ++L++ L L+++Q+KTW+QNRR KWK
Sbjct: 205 LDLAETLGLSQLQVKTWYQNRRMKWK 230


>gi|383861093|ref|XP_003706021.1| PREDICTED: T-cell leukemia homeobox protein 3-like [Megachile
           rotundata]
          Length = 181

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query: 29  DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
            KYL+ ++R  L+K L +T+ Q+KTWFQNRRTKW++Q A +
Sbjct: 68  QKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEE 108



 Score = 42.7 bits (99), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 28/42 (66%)

Query: 3   LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
           L+K L +T+ Q+KTWFQNRRTKW+        ++R   ++L+
Sbjct: 79  LAKSLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLM 120


>gi|322803222|gb|EFZ23243.1| hypothetical protein SINV_10329 [Solenopsis invicta]
          Length = 250

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           V +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 167 VQRYLSTPERVELAAALHLSETQVKTWFQNRRMKHKKQL 205



 Score = 39.3 bits (90), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 177 VELAAALHLSETQVKTWFQNRRMKHK 202


>gi|443705253|gb|ELU01908.1| hypothetical protein CAPTEDRAFT_151262 [Capitella teleta]
          Length = 272

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 27  YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR 77
           +  KYLS+++R +++  LNL+EVQ+K WFQNRR KWK+  A     V H R
Sbjct: 173 HSKKYLSLTERSQIAHQLNLSEVQVKIWFQNRRAKWKRVKAG----VVHGR 219



 Score = 44.3 bits (103), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 2   ELSKLLNLTEVQIKTWFQNRRTKWKYV 28
           +++  LNL+EVQ+K WFQNRR KWK V
Sbjct: 185 QIAHQLNLSEVQVKIWFQNRRAKWKRV 211


>gi|402895592|ref|XP_003910905.1| PREDICTED: LOW QUALITY PROTEIN: brain-specific homeobox protein
           homolog [Papio anubis]
          Length = 267

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 28  VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
           + +YLS  +R+EL+  L+L+E Q+KTWFQNRR K KKQL
Sbjct: 166 IQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQL 204



 Score = 39.3 bits (90), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 16/26 (61%), Positives = 21/26 (80%)

Query: 1   MELSKLLNLTEVQIKTWFQNRRTKWK 26
           +EL+  L+L+E Q+KTWFQNRR K K
Sbjct: 176 VELATALSLSETQVKTWFQNRRMKHK 201


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.319    0.133    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,930,229,733
Number of Sequences: 23463169
Number of extensions: 73903405
Number of successful extensions: 228047
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 14399
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 198705
Number of HSP's gapped (non-prelim): 29539
length of query: 120
length of database: 8,064,228,071
effective HSP length: 87
effective length of query: 33
effective length of database: 6,022,932,368
effective search space: 198756768144
effective search space used: 198756768144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)