BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4877
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26797|HM19_CAEEL Homeobox protein ceh-19 OS=Caenorhabditis elegans GN=ceh-19 PE=2
SV=2
Length = 199
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 43/53 (81%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
DKYLSV+KR++LS+ LNLTE QIKTWFQNRRTKWKKQL S ++ + + PT
Sbjct: 115 TDKYLSVNKRIQLSQTLNLTETQIKTWFQNRRTKWKKQLTSSIRQMVKDAPTS 167
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 24/26 (92%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
++LS+ LNLTE QIKTWFQNRRTKWK
Sbjct: 125 IQLSQTLNLTETQIKTWFQNRRTKWK 150
>sp|Q9BZE3|BARH1_HUMAN BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1
Length = 327
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYLSV RMEL+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
MEL+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234
>sp|P63156|BARH1_RAT BarH-like 1 homeobox protein OS=Rattus norvegicus GN=Barhl1 PE=2
SV=1
Length = 327
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYLSV RMEL+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
MEL+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234
>sp|P63157|BARH1_MOUSE BarH-like 1 homeobox protein OS=Mus musculus GN=Barhl1 PE=2 SV=1
Length = 327
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 37/46 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYLSV RMEL+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A
Sbjct: 201 KYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE 246
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
MEL+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 209 MELAASLNLTDTQVKTWYQNRRTKWK 234
>sp|Q8VIB5|BARH2_MOUSE BarH-like 2 homeobox protein OS=Mus musculus GN=Barhl2 PE=2 SV=2
Length = 384
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
KYLSV RM+L+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A G Y F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308
Query: 84 PGGGPLIFGAQHGSPTAPYFFSASML 109
P +PYF+ S+L
Sbjct: 309 P---------------SPYFYHPSLL 319
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
M+L+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285
>sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2
SV=1
Length = 384
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
KYLSV RM+L+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A G Y F
Sbjct: 252 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 308
Query: 84 PGGGPLIFGAQHGSPTAPYFFSASML 109
P +PYF+ S+L
Sbjct: 309 P---------------SPYFYHPSLL 319
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
M+L+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 260 MDLAAALNLTDTQVKTWYQNRRTKWK 285
>sp|Q9NY43|BARH2_HUMAN BarH-like 2 homeobox protein OS=Homo sapiens GN=BARHL2 PE=2 SV=2
Length = 387
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 24/86 (27%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFY------F 83
KYLSV RM+L+ LNLT+ Q+KTW+QNRRTKWK+Q A L+++A G Y F
Sbjct: 255 KYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE---AGNYSALQRMF 311
Query: 84 PGGGPLIFGAQHGSPTAPYFFSASML 109
P +PYF+ S+L
Sbjct: 312 P---------------SPYFYHPSLL 322
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
M+L+ LNLT+ Q+KTW+QNRRTKWK
Sbjct: 263 MDLAAALNLTDTQVKTWYQNRRTKWK 288
>sp|Q24256|BARH2_DROME Homeobox protein B-H2 OS=Drosophila melanogaster GN=B-H2 PE=1 SV=3
Length = 645
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 36/45 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
KYLSV RMEL+ L L++ Q+KTW+QNRRTKWK+Q A L+++A
Sbjct: 403 KYLSVQDRMELANKLELSDCQVKTWYQNRRTKWKRQTAVGLELLA 447
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
MEL+ L L++ Q+KTW+QNRRTKWK
Sbjct: 411 MELANKLELSDCQVKTWYQNRRTKWK 436
>sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2
Length = 544
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
KYLSV +R EL+ L+L++ Q+KTW+QNRRTKWK+Q A L+++A
Sbjct: 322 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWKRQTAVGLELLA 366
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+ L+L++ Q+KTW+QNRRTKWK
Sbjct: 331 ELAHKLDLSDCQVKTWYQNRRTKWK 355
>sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananassae GN=B-H1 PE=2 SV=1
Length = 606
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 36/45 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVA 74
KYLSV +R EL+ L+L++ Q+KTW+QNRRTKW +Q A L+++A
Sbjct: 354 KYLSVQERQELAHKLDLSDCQVKTWYQNRRTKWMRQTAVGLELLA 398
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKW 25
EL+ L+L++ Q+KTW+QNRRTKW
Sbjct: 363 ELAHKLDLSDCQVKTWYQNRRTKW 386
>sp|Q9DE09|HMX1_CHICK Homeobox protein HMX1 OS=Gallus gallus GN=HMX1 PE=2 SV=1
Length = 333
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 34/46 (73%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
V +YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA+ L+
Sbjct: 222 VKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAADLEAA 267
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 234 LAASLHLTETQVKIWFQNRRNKWK 257
>sp|Q9NP08|HMX1_HUMAN Homeobox protein HMX1 OS=Homo sapiens GN=HMX1 PE=2 SV=2
Length = 348
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
+ +YLS ++R L+ L LTE Q+K WFQNRR KWK+QLA++L+ + + P
Sbjct: 224 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 274
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L LTE Q+K WFQNRR KWK
Sbjct: 236 LAASLQLTETQVKIWFQNRRNKWK 259
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 OS=Caenorhabditis elegans GN=ceh-30 PE=2
SV=2
Length = 237
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYLSV RM+L+ + LT+ Q+KTW+QNRRTKWK+Q S + +++
Sbjct: 118 KYLSVQDRMDLAHRMGLTDTQVKTWYQNRRTKWKRQATSGMDLLSE 163
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50
M+L+ + LT+ Q+KTW+QNRRTKWK + S LS+ NL+ VQ
Sbjct: 126 MDLAHRMGLTDTQVKTWYQNRRTKWKRQ----ATSGMDLLSEPGNLSAVQ 171
>sp|Q26656|HMX_STRPU Homeobox protein Hmx (Fragment) OS=Strongylocentrotus purpuratus
GN=HMX PE=2 SV=1
Length = 405
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
V +YLS S+R L+ L+LTE Q+K WFQNRR KWK+Q+A++L+
Sbjct: 274 VKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKRQMAAELE 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 286 LAANLHLTETQVKIWFQNRRNKWK 309
>sp|P50223|HMGX7_CHICK Homeobox protein GHOX-7 OS=Gallus gallus GN=GHOX-7 PE=2 SV=1
Length = 288
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN--RPT--GFY 82
+YLS+++R E S L+LTE Q+K WFQNRR K K+ Q A KLKM A P G
Sbjct: 184 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAAFGIS 243
Query: 83 FPGGGPLIFGA 93
FP GGP + GA
Sbjct: 244 FPLGGPAVAGA 254
>sp|Q9VEI9|HMX_DROME Homeobox protein Hmx OS=Drosophila melanogaster GN=Hmx PE=2 SV=3
Length = 592
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 33/42 (78%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
+YLS S+R L+ L LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 491 RYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 532
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L LTE Q+K WFQNRR KWK
Sbjct: 501 LAASLRLTETQVKIWFQNRRNKWK 524
>sp|P43687|HMX2_MOUSE Homeobox protein HMX2 OS=Mus musculus GN=Hmx2 PE=2 SV=3
Length = 273
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM--VAHNRPTGFYFPG 85
+ +YLS S+R L+ L LTE Q+KTWFQNRR KWK+QL+++L+ +AH
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLV--- 226
Query: 86 GGPLIF 91
G PL+F
Sbjct: 227 GMPLVF 232
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205
>sp|O70218|HMX1_MOUSE Homeobox protein HMX1 OS=Mus musculus GN=Hmx1 PE=2 SV=1
Length = 332
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRP 78
+ +YLS ++R L+ L LTE Q+K WFQNRR KWK+QLA++L+ + + P
Sbjct: 212 LKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPP 262
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L LTE Q+K WFQNRR KWK
Sbjct: 224 LAASLQLTETQVKIWFQNRRNKWK 247
>sp|A2RU54|HMX2_HUMAN Homeobox protein HMX2 OS=Homo sapiens GN=HMX2 PE=2 SV=1
Length = 273
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+ +YLS S+R L+ L LTE Q+KTWFQNRR KWK+QL+++L+
Sbjct: 170 MKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAA 215
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L LTE Q+KTWFQNRR KWK
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWK 205
>sp|P28361|MSX1_CHICK Homeobox protein MSX-1 OS=Gallus gallus GN=MSX1 PE=2 SV=1
Length = 249
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 11/82 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNRPT------G 80
+YLS+++R E S L+LTE Q+K WFQNRR K K+ Q A KLKM A +P G
Sbjct: 145 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA--KPMLPPAAFG 202
Query: 81 FYFPGGGPLIFGAQHGSPTAPY 102
FP GGP + GA ++P+
Sbjct: 203 ISFPLGGPAVAGASLYGASSPF 224
>sp|Q90XN9|HMX3B_ORYLA Homeobox protein HMX3-B OS=Oryzias latipes GN=hmx3b PE=2 SV=1
Length = 290
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 35/46 (76%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+ +YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 187 IKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 232
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 199 LAASLHLTETQVKIWFQNRRNKWK 222
>sp|Q9GK08|MSX2_CANFA Homeobox protein MSX-2 OS=Canis familiaris GN=MSX2 PE=2 SV=1
Length = 267
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+GF F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224
Query: 84 PGGGPL----IFGAQH 95
P PL I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
E S LNLTE Q+K WFQNRR K K + + EL KL + + + F
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE-------AELEKLKMAAKPMLPSGF 220
>sp|A8XJD0|HM30_CAEBR Homeobox protein ceh-30 OS=Caenorhabditis briggsae GN=ceh-30 PE=3
SV=1
Length = 233
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYLSV RM+L+ + L++ Q+KTW+QNRRTKWK+Q S + +++
Sbjct: 111 KYLSVQDRMDLAHRMGLSDTQVKTWYQNRRTKWKRQATSGMDLLSE 156
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
M+L+ + L++ Q+KTW+QNRRTKWK
Sbjct: 119 MDLAHRMGLSDTQVKTWYQNRRTKWK 144
>sp|Q03358|MSX2_MOUSE Homeobox protein MSX-2 OS=Mus musculus GN=Msx2 PE=1 SV=2
Length = 267
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 47/76 (61%), Gaps = 10/76 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+GF F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224
Query: 84 PGGGPL----IFGAQH 95
P PL I+GA +
Sbjct: 225 PINSPLQAASIYGASY 240
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E S LNLTE Q+K WFQNRR K K
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAK 198
>sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis elegans GN=ceh-31 PE=4
SV=2
Length = 260
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
KYLSV RMEL+ + LT+ Q+KTW+QNRRTKWK+Q + + ++
Sbjct: 117 KYLSVQDRMELAHRMGLTDTQVKTWYQNRRTKWKRQASVGMDLL 160
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRT 60
MEL+ + LT+ Q+KTW+QNRRTKWK + SV + L N+ VQ Q RT
Sbjct: 125 MELAHRMGLTDTQVKTWYQNRRTKWK---RQASVGMDL-LHDAGNMAAVQ-----QLLRT 175
Query: 61 K--WKKQLASKLKM--VAHNRP--TGFYFPGGGPLIFGAQHGSPTAPYFFSASMLDDSQS 114
W L+ M ++NRP P +I + + + S ++ DD S
Sbjct: 176 NPYWANYLSQNTSMFGASNNRPVFNSLVVPTSS-MIPASNSQNSLLQFLASQNVKDDISS 234
Query: 115 PRDAPG 120
P+++P
Sbjct: 235 PKESPS 240
>sp|P42581|HMX3_MOUSE Homeobox protein HMX3 OS=Mus musculus GN=Hmx3 PE=1 SV=3
Length = 356
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283
>sp|A6NHT5|HMX3_HUMAN Homeobox protein HMX3 OS=Homo sapiens GN=HMX3 PE=2 SV=1
Length = 357
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 250 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 293
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 260 LAASLHLTETQVKIWFQNRRNKWK 283
>sp|Q15270|NKX11_HUMAN NK1 transcription factor-related protein 1 OS=Homo sapiens
GN=NKX1-1 PE=2 SV=2
Length = 411
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLSV +R+ L+ L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 282 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 317
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+ L+ L+LTE Q+K WFQNRRTKWK
Sbjct: 290 LNLALSLSLTETQVKIWFQNRRTKWK 315
>sp|O57601|HMX3_CHICK Homeobox protein HMX3 OS=Gallus gallus GN=HMX3 PE=2 SV=1
Length = 308
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 204 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 247
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 214 LAASLHLTETQVKIWFQNRRNKWK 237
>sp|Q8JJ64|HMX3_XENLA Homeobox protein HMX3 OS=Xenopus laevis GN=hmx3 PE=1 SV=1
Length = 306
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 201 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 244
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 211 LAASLHLTETQVKIWFQNRRNKWK 234
>sp|O42370|HXD3A_DANRE Homeobox protein Hox-D3a OS=Danio rerio GN=hoxd3a PE=2 SV=2
Length = 396
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
+ ++YL +R+E++ LLNLTE QIK WFQNRR K+KK SK M + P G + P
Sbjct: 181 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKGIM---HSPLG-HSPDR 236
Query: 87 GPLIFGAQH 95
P + G+ H
Sbjct: 237 SPPLSGSNH 245
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ LLNLTE QIK WFQNRR K+K
Sbjct: 192 VEMANLLNLTERQIKIWFQNRRMKYK 217
>sp|Q0P4W6|HMX3_XENTR Homeobox protein HMX3 OS=Xenopus tropicalis GN=hmx3 PE=2 SV=1
Length = 306
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 201 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 244
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 211 LAASLHLTETQVKIWFQNRRNKWK 234
>sp|P23410|MSX2_COTJA Homeobox protein MSX-2 OS=Coturnix coturnix japonica GN=MSX2 PE=2
SV=1
Length = 259
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A+ P+GF F
Sbjct: 157 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAANAMLPSGFSLPF 216
Query: 84 PGGGPLIFGAQHGS 97
P P+ + +G+
Sbjct: 217 PINSPIQAASLYGT 230
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWF 55
E S LNLTE Q+K WFQNRR K K + + EL KL + + F
Sbjct: 166 EFSSSLNLTETQVKIWFQNRRAKAKRL-------QEAELEKLKMAANAMLPSGF 212
>sp|Q9UD57|NKX12_HUMAN NK1 transcription factor-related protein 2 OS=Homo sapiens
GN=NKX1-2 PE=2 SV=3
Length = 310
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLSV +R+ L+ L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 186 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 221
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+ L+ L+LTE Q+K WFQNRRTKWK
Sbjct: 194 LNLALSLSLTETQVKIWFQNRRTKWK 219
>sp|P42580|NKX12_MOUSE NK1 transcription factor-related protein 2 OS=Mus musculus
GN=Nkx1-2 PE=1 SV=1
Length = 305
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLSV +R+ L+ L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 179 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 214
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+ L+ L+LTE Q+K WFQNRRTKWK
Sbjct: 187 LNLALSLSLTETQVKIWFQNRRTKWK 212
>sp|Q504H8|HMX3_DANRE Homeobox protein HMX3 OS=Danio rerio GN=hmx3 PE=2 SV=1
Length = 297
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 193 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 236
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 203 LAASLHLTETQVKIWFQNRRNKWK 226
>sp|Q90XP0|HMX3A_ORYLA Homeobox protein HMX3-A OS=Oryzias latipes GN=hmx3a PE=2 SV=1
Length = 303
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
+YLS S+R L+ L+LTE Q+K WFQNRR KWK+QLA++L+
Sbjct: 198 RYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAA 241
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+LTE Q+K WFQNRR KWK
Sbjct: 208 LAASLHLTETQVKIWFQNRRNKWK 231
>sp|Q0P5C3|MSX2_BOVIN Homeobox protein MSX-2 OS=Bos taurus GN=MSX2 PE=2 SV=1
Length = 267
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+GF F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 224
Query: 84 PGGGPLIFGAQHGS 97
P PL + +G+
Sbjct: 225 PINSPLQAASLYGA 238
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
E S LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202
>sp|A8DT10|HXD3_HAPBU Homeobox protein Hox-D3 OS=Haplochromis burtoni GN=hoxd3a PE=3 SV=1
Length = 404
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
+ ++YL +R+E++ LLNLTE QIK WFQNRR K+KK K K +AH+ P G + P
Sbjct: 189 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 244
Query: 87 GPLIFGAQH 95
P + G H
Sbjct: 245 SPPLSGPNH 253
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ LLNLTE QIK WFQNRR K+K
Sbjct: 200 VEMANLLNLTERQIKIWFQNRRMKYK 225
>sp|P19601|SAX1_CHICK Homeobox protein SAX-1 (Fragment) OS=Gallus gallus GN=SAX1 PE=2
SV=2
Length = 232
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLSV +R+ L+ L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 86 ATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 123
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+ L+ L+LTE Q+K WFQNRRTKWK
Sbjct: 96 LNLALSLSLTETQVKIWFQNRRTKWK 121
>sp|Q61663|TLX2_MOUSE T-cell leukemia homeobox protein 2 OS=Mus musculus GN=Tlx2 PE=2
SV=1
Length = 284
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYL+ ++R L+K L +T+ Q+KTWFQNRRTKW++Q A + + H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
L+K L +T+ Q+KTWFQNRRTKW+ ++R +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231
>sp|Q3V5Z9|HXD3_ORYLA Homeobox protein Hox-D3 OS=Oryzias latipes GN=hoxd3a PE=3 SV=1
Length = 395
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
+ ++YL +R+E++ LLNLTE QIK WFQNRR K+KK K K +AH+ P G + P
Sbjct: 180 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 235
Query: 87 GPLIFGAQH 95
P + G H
Sbjct: 236 SPPLSGPNH 244
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ LLNLTE QIK WFQNRR K+K
Sbjct: 191 VEMANLLNLTERQIKIWFQNRRMKYK 216
>sp|Q1KKS7|HXD3A_TAKRU Homeobox protein Hox-D3a OS=Takifugu rubripes GN=hoxd3a PE=3 SV=1
Length = 408
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGG 86
+ ++YL +R+E++ LLNLTE QIK WFQNRR K+KK K K +AH+ P G + P
Sbjct: 195 HFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKD--QKSKGLAHS-PLG-HSPDR 250
Query: 87 GPLIFGAQH 95
P + G H
Sbjct: 251 SPPLSGPNH 259
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ LLNLTE QIK WFQNRR K+K
Sbjct: 206 VEMANLLNLTERQIKIWFQNRRMKYK 231
>sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanogaster GN=slou PE=2 SV=1
Length = 659
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLSV +R+ L+ L+LTE Q+K WFQNRRTKWKKQ
Sbjct: 568 RYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQ 603
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35
+ L+ L+LTE Q+K WFQNRRTKWK + + V+
Sbjct: 576 LNLALSLSLTETQVKIWFQNRRTKWKKQNPGMDVN 610
>sp|P35993|HOX7P_XENLA Homeobox protein XHOX-7.1' (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 291
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHN-RPTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P GF F
Sbjct: 183 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAKPILPPGFSIPF 242
Query: 84 PGGGPLIFGAQHGS 97
P P+ + +GS
Sbjct: 243 PINSPIQAASLYGS 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E S LNLTE Q+K WFQNRR K K
Sbjct: 192 EFSSSLNLTETQVKIWFQNRRAKAK 216
>sp|P28362|MSX2_CHICK Homeobox protein MSX-2 OS=Gallus gallus GN=MSX2 PE=2 SV=2
Length = 259
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+GF F
Sbjct: 157 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSGFSLPF 216
Query: 84 PGGGPLIFGAQHGS 97
P P+ + +G+
Sbjct: 217 PINSPIQAASLYGT 230
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E S LNLTE Q+K WFQNRR K K
Sbjct: 166 EFSSSLNLTETQVKIWFQNRRAKAK 190
>sp|O43763|TLX2_HUMAN T-cell leukemia homeobox protein 2 OS=Homo sapiens GN=TLX2 PE=1
SV=2
Length = 284
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYL+ ++R L+K L +T+ Q+KTWFQNRRTKW++Q A + + H
Sbjct: 180 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERH 225
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL 44
L+K L +T+ Q+KTWFQNRRTKW+ ++R +LL
Sbjct: 190 LAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLL 231
>sp|A1YG93|MSX2_PANPA Homeobox protein MSX-2 OS=Pan paniscus GN=MSX2 PE=3 SV=1
Length = 267
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+ F F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224
Query: 84 PGGGPL----IFGAQH 95
P PL I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
E S LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202
>sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 OS=Homo sapiens GN=MSX2 PE=1 SV=3
Length = 267
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+ F F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224
Query: 84 PGGGPL----IFGAQH 95
P PL I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
E S LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202
>sp|A1YF16|MSX2_GORGO Homeobox protein MSX-2 OS=Gorilla gorilla gorilla GN=MSX2 PE=3 SV=1
Length = 267
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK-QLA--SKLKMVAHNR-PTGFY--F 83
+YLS+++R E S LNLTE Q+K WFQNRR K K+ Q A KLKM A P+ F F
Sbjct: 165 QYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPSSFSLPF 224
Query: 84 PGGGPL----IFGAQH 95
P PL I+GA +
Sbjct: 225 PISSPLQAASIYGASY 240
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
E S LNLTE Q+K WFQNRR K K + +
Sbjct: 174 EFSSSLNLTETQVKIWFQNRRAKAKRLQE 202
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,430,489
Number of Sequences: 539616
Number of extensions: 1703683
Number of successful extensions: 6791
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 4505
Number of HSP's gapped (non-prelim): 2341
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)