Query psy4877
Match_columns 120
No_of_seqs 129 out of 1542
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4877.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4877hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 1.8E-19 6.3E-24 108.7 6.2 63 5-72 10-72 (80)
2 3a03_A T-cell leukemia homeobo 99.8 2.1E-19 7.3E-24 101.5 4.5 54 7-65 2-55 (56)
3 2ecc_A Homeobox and leucine zi 99.8 3.9E-19 1.3E-23 105.8 4.7 56 5-65 6-61 (76)
4 3a02_A Homeobox protein arista 99.8 3.2E-19 1.1E-23 102.1 3.5 57 5-66 2-58 (60)
5 2hdd_A Protein (engrailed home 99.8 5.2E-19 1.8E-23 101.5 4.0 56 4-64 5-60 (61)
6 2h1k_A IPF-1, pancreatic and d 99.8 7.9E-19 2.7E-23 101.3 4.7 56 5-65 6-61 (63)
7 1ig7_A Homeotic protein MSX-1; 99.8 7.6E-19 2.6E-23 99.8 4.5 55 5-64 3-57 (58)
8 1ahd_P Antennapedia protein mu 99.8 8.8E-19 3E-23 102.6 4.8 59 3-66 3-61 (68)
9 2dmq_A LIM/homeobox protein LH 99.7 5.4E-19 1.8E-23 106.5 3.8 59 4-67 9-67 (80)
10 2dms_A Homeobox protein OTX2; 99.7 1.9E-19 6.4E-24 108.6 1.7 57 4-65 9-65 (80)
11 1puf_A HOX-1.7, homeobox prote 99.7 1.3E-18 4.6E-23 104.1 5.4 59 5-68 16-74 (77)
12 1zq3_P PRD-4, homeotic bicoid 99.7 1.1E-18 3.7E-23 102.2 4.7 60 4-68 4-63 (68)
13 1nk2_P Homeobox protein VND; h 99.7 1.6E-18 5.4E-23 103.8 5.1 58 5-67 12-69 (77)
14 1jgg_A Segmentation protein EV 99.7 1.6E-18 5.5E-23 99.1 4.5 56 5-65 4-59 (60)
15 1uhs_A HOP, homeodomain only p 99.7 1.9E-18 6.6E-23 102.2 5.0 58 4-66 3-61 (72)
16 2dmu_A Homeobox protein goosec 99.7 1.6E-18 5.3E-23 102.1 4.6 57 4-65 9-65 (70)
17 2hi3_A Homeodomain-only protei 99.7 2.3E-18 7.8E-23 102.2 4.8 59 4-66 4-62 (73)
18 2e1o_A Homeobox protein PRH; D 99.7 2.3E-18 7.7E-23 101.4 4.7 57 4-65 9-65 (70)
19 3nau_A Zinc fingers and homeob 99.7 2.2E-18 7.6E-23 99.5 4.4 51 9-64 11-61 (66)
20 2dmt_A Homeobox protein BARH-l 99.7 1E-18 3.5E-23 105.4 3.1 56 5-65 20-75 (80)
21 1ftt_A TTF-1 HD, thyroid trans 99.7 2.6E-18 8.9E-23 100.6 4.7 59 3-66 3-61 (68)
22 2cra_A Homeobox protein HOX-B1 99.7 7.2E-19 2.4E-23 103.5 2.2 57 4-65 9-65 (70)
23 2vi6_A Homeobox protein nanog; 99.7 8.9E-19 3.1E-23 100.8 2.4 57 4-65 5-61 (62)
24 1fjl_A Paired protein; DNA-bin 99.7 3.9E-18 1.3E-22 103.0 5.2 59 4-67 20-78 (81)
25 1yz8_P Pituitary homeobox 2; D 99.7 2.1E-18 7E-23 101.0 3.8 58 4-66 5-62 (68)
26 3a01_A Homeodomain-containing 99.7 3.8E-18 1.3E-22 105.7 4.8 59 5-68 20-78 (93)
27 2da1_A Alpha-fetoprotein enhan 99.7 2.3E-18 8E-23 101.3 3.6 57 4-65 9-65 (70)
28 2ecb_A Zinc fingers and homeob 99.7 7.1E-19 2.4E-23 107.9 1.3 53 8-65 17-69 (89)
29 2da4_A Hypothetical protein DK 99.7 3.1E-18 1.1E-22 103.2 4.0 56 4-64 10-69 (80)
30 2da5_A Zinc fingers and homeob 99.7 3.7E-18 1.3E-22 101.8 4.3 57 4-65 9-65 (75)
31 2da2_A Alpha-fetoprotein enhan 99.7 1.9E-18 6.6E-23 101.6 2.9 57 4-65 9-65 (70)
32 1b8i_A Ultrabithorax, protein 99.7 3.5E-18 1.2E-22 103.3 4.0 57 4-65 22-78 (81)
33 2l7z_A Homeobox protein HOX-A1 99.7 2.4E-18 8E-23 102.1 3.2 57 4-65 9-65 (73)
34 1b72_A Protein (homeobox prote 99.7 4.1E-18 1.4E-22 106.2 4.1 58 5-67 37-94 (97)
35 2da3_A Alpha-fetoprotein enhan 99.7 1.9E-18 6.5E-23 104.1 2.4 57 4-65 19-75 (80)
36 2r5y_A Homeotic protein sex co 99.7 4.4E-18 1.5E-22 104.3 4.0 57 4-65 30-86 (88)
37 1b72_B Protein (PBX1); homeodo 99.7 5.4E-18 1.8E-22 103.6 4.3 68 4-73 3-70 (87)
38 2djn_A Homeobox protein DLX-5; 99.7 1.4E-18 4.9E-23 102.2 1.6 57 4-65 9-65 (70)
39 1k61_A Mating-type protein alp 99.7 5E-18 1.7E-22 97.0 3.7 55 5-64 1-58 (60)
40 1bw5_A ISL-1HD, insulin gene e 99.7 2.4E-18 8.2E-23 100.2 2.3 56 5-65 6-61 (66)
41 2k40_A Homeobox expressed in E 99.7 5.2E-18 1.8E-22 99.0 3.7 56 5-65 4-59 (67)
42 2kt0_A Nanog, homeobox protein 99.7 2.4E-18 8.2E-23 104.6 2.3 56 5-65 25-80 (84)
43 2cuf_A FLJ21616 protein; homeo 99.7 4.9E-18 1.7E-22 105.5 3.6 60 4-68 9-83 (95)
44 3rkq_A Homeobox protein NKX-2. 99.7 5.9E-18 2E-22 95.9 3.5 55 4-63 4-58 (58)
45 2dn0_A Zinc fingers and homeob 99.7 3.1E-18 1.1E-22 102.3 2.3 56 5-65 11-66 (76)
46 1wh5_A ZF-HD homeobox family p 99.7 2.4E-18 8.1E-23 103.8 1.7 55 5-64 20-78 (80)
47 1akh_A Protein (mating-type pr 99.7 6.5E-18 2.2E-22 96.8 3.2 54 5-63 8-61 (61)
48 1wh7_A ZF-HD homeobox family p 99.7 2E-18 6.7E-23 104.1 0.9 60 4-64 19-78 (80)
49 2cqx_A LAG1 longevity assuranc 99.7 1.6E-18 5.6E-23 102.6 0.2 56 4-64 10-66 (72)
50 2ly9_A Zinc fingers and homeob 99.7 7.3E-18 2.5E-22 100.1 3.1 56 5-65 9-64 (74)
51 2dmp_A Zinc fingers and homeob 99.7 1.5E-17 5E-22 102.2 4.0 54 7-65 18-71 (89)
52 2l9r_A Homeobox protein NKX-3. 99.7 5.9E-18 2E-22 99.3 2.1 52 9-65 11-62 (69)
53 2m0c_A Homeobox protein arista 99.7 1.5E-17 5.2E-22 98.9 3.1 56 5-65 12-67 (75)
54 1x2m_A LAG1 longevity assuranc 99.7 1.2E-17 4.1E-22 96.4 2.2 49 12-64 10-58 (64)
55 1puf_B PRE-B-cell leukemia tra 99.7 6E-17 2E-21 95.9 4.4 62 4-67 3-64 (73)
56 3nar_A ZHX1, zinc fingers and 99.7 3.3E-17 1.1E-21 101.9 3.4 57 4-65 27-83 (96)
57 2dmn_A Homeobox protein TGIF2L 99.7 2E-17 6.8E-22 100.4 2.2 57 4-65 9-68 (83)
58 1x2n_A Homeobox protein pknox1 99.7 6.9E-17 2.4E-21 95.7 4.5 59 5-65 10-68 (73)
59 2da6_A Hepatocyte nuclear fact 99.7 1.2E-16 3.9E-21 99.9 5.5 60 4-68 8-88 (102)
60 2e19_A Transcription factor 8; 99.7 5.2E-17 1.8E-21 94.0 3.5 53 7-64 8-60 (64)
61 1le8_B Mating-type protein alp 99.7 3.5E-17 1.2E-21 99.3 2.6 59 5-65 5-63 (83)
62 1du6_A PBX1, homeobox protein 99.6 1.6E-17 5.6E-22 96.0 0.6 59 4-64 5-63 (64)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 1.5E-16 5.1E-21 97.3 3.9 54 5-63 30-86 (87)
64 1e3o_C Octamer-binding transcr 99.6 2.1E-16 7.3E-21 106.5 3.3 56 4-64 103-158 (160)
65 1au7_A Protein PIT-1, GHF-1; c 99.6 1.8E-16 6.3E-21 105.4 2.8 55 5-64 90-144 (146)
66 2xsd_C POU domain, class 3, tr 99.6 2.1E-16 7E-21 107.0 3.0 57 4-65 101-157 (164)
67 3k2a_A Homeobox protein MEIS2; 99.6 3.1E-16 1.1E-20 91.5 3.2 53 8-65 4-59 (67)
68 1wi3_A DNA-binding protein SAT 99.6 4.8E-16 1.6E-20 89.8 3.2 53 5-61 10-62 (71)
69 3d1n_I POU domain, class 6, tr 99.6 4.3E-16 1.5E-20 104.1 3.2 55 5-64 96-150 (151)
70 3l1p_A POU domain, class 5, tr 99.6 8.9E-16 3E-20 103.0 3.3 56 5-65 99-154 (155)
71 1lfb_A Liver transcription fac 99.6 6.1E-16 2.1E-20 96.6 2.1 57 4-65 11-88 (99)
72 2d5v_A Hepatocyte nuclear fact 99.5 1.4E-15 4.6E-20 102.9 1.8 57 4-65 99-155 (164)
73 2lk2_A Homeobox protein TGIF1; 99.5 1E-14 3.6E-19 89.0 4.8 56 8-68 11-69 (89)
74 2da7_A Zinc finger homeobox pr 99.4 1.2E-13 4.1E-18 80.2 3.4 46 11-61 14-59 (71)
75 1ic8_A Hepatocyte nuclear fact 99.4 6.9E-14 2.4E-18 96.8 1.9 56 4-64 117-193 (194)
76 1mh3_A Maltose binding-A1 home 99.3 3.2E-13 1.1E-17 101.4 1.5 53 6-63 369-421 (421)
77 2h8r_A Hepatocyte nuclear fact 99.3 1.7E-12 5.7E-17 91.0 3.2 53 4-61 144-217 (221)
78 1x2m_A LAG1 longevity assuranc 99.2 5.6E-12 1.9E-16 72.5 1.9 27 2-28 33-59 (64)
79 3a03_A T-cell leukemia homeobo 99.1 1.6E-11 5.3E-16 68.9 2.2 27 2-28 29-55 (56)
80 2ecb_A Zinc fingers and homeob 99.1 1.7E-11 5.9E-16 74.9 2.6 29 2-30 43-71 (89)
81 2l9r_A Homeobox protein NKX-3. 99.1 1.8E-11 6.2E-16 71.5 2.3 28 2-29 36-63 (69)
82 2cqx_A LAG1 longevity assuranc 99.1 2.6E-11 8.8E-16 71.4 2.3 27 2-28 41-67 (72)
83 3nau_A Zinc fingers and homeob 99.1 3.4E-11 1.2E-15 69.3 2.3 26 2-27 36-61 (66)
84 2ecc_A Homeobox and leucine zi 99.1 5.2E-11 1.8E-15 70.6 2.6 27 2-28 35-61 (76)
85 3a02_A Homeobox protein arista 99.1 4.4E-11 1.5E-15 67.9 2.1 29 2-30 31-59 (60)
86 2nzz_A Penetratin conjugated G 99.1 1.5E-11 5E-16 63.0 -0.1 21 49-69 1-21 (37)
87 2h1k_A IPF-1, pancreatic and d 99.0 6.2E-11 2.1E-15 67.9 2.2 27 2-28 35-61 (63)
88 2dmt_A Homeobox protein BARH-l 99.0 6.2E-11 2.1E-15 71.0 2.3 29 2-30 49-77 (80)
89 2vi6_A Homeobox protein nanog; 99.0 6.8E-11 2.3E-15 67.5 2.4 27 2-28 35-61 (62)
90 2cra_A Homeobox protein HOX-B1 99.0 7.6E-11 2.6E-15 68.9 2.5 29 2-30 39-67 (70)
91 1ahd_P Antennapedia protein mu 99.0 7.5E-11 2.6E-15 68.5 2.3 29 2-30 34-62 (68)
92 2hdd_A Protein (engrailed home 99.0 8.5E-11 2.9E-15 66.8 2.3 26 2-27 35-60 (61)
93 2kt0_A Nanog, homeobox protein 99.0 9E-11 3.1E-15 70.8 2.4 29 2-30 54-82 (84)
94 1uhs_A HOP, homeodomain only p 99.0 8.5E-11 2.9E-15 69.0 2.3 29 2-30 34-62 (72)
95 1yz8_P Pituitary homeobox 2; D 99.0 1.1E-10 3.6E-15 67.9 2.5 30 1-30 34-63 (68)
96 2r5y_A Homeotic protein sex co 99.0 1.1E-10 3.8E-15 71.1 2.7 28 2-29 60-87 (88)
97 2dmu_A Homeobox protein goosec 99.0 1.1E-10 3.9E-15 68.1 2.4 29 2-30 39-67 (70)
98 2hi3_A Homeodomain-only protei 99.0 1E-10 3.4E-15 68.9 2.2 29 2-30 35-63 (73)
99 2da1_A Alpha-fetoprotein enhan 99.0 1.1E-10 3.9E-15 68.0 2.4 29 2-30 39-67 (70)
100 1b8i_A Ultrabithorax, protein 99.0 1.1E-10 3.9E-15 70.0 2.4 28 2-29 52-79 (81)
101 1ig7_A Homeotic protein MSX-1; 99.0 1.3E-10 4.4E-15 65.4 2.5 26 2-27 32-57 (58)
102 2da2_A Alpha-fetoprotein enhan 99.0 1.2E-10 4.2E-15 67.9 2.5 29 2-30 39-67 (70)
103 2da3_A Alpha-fetoprotein enhan 99.0 1.2E-10 4E-15 69.6 2.3 28 2-29 49-76 (80)
104 2djn_A Homeobox protein DLX-5; 99.0 1.1E-10 3.8E-15 68.1 2.2 29 2-30 39-67 (70)
105 2cue_A Paired box protein PAX6 99.0 1E-10 3.5E-15 70.0 2.1 29 2-30 39-67 (80)
106 2dmp_A Zinc fingers and homeob 99.0 1.3E-10 4.4E-15 71.0 2.5 29 2-30 45-73 (89)
107 2da4_A Hypothetical protein DK 99.0 1.3E-10 4.3E-15 69.6 2.3 27 2-28 44-70 (80)
108 2da5_A Zinc fingers and homeob 99.0 1.2E-10 4.1E-15 68.9 2.1 29 2-30 39-67 (75)
109 2e19_A Transcription factor 8; 99.0 1.1E-10 3.7E-15 67.2 1.9 27 2-28 35-61 (64)
110 1puf_A HOX-1.7, homeobox prote 99.0 1.1E-10 3.7E-15 69.5 1.9 28 2-29 45-72 (77)
111 2dms_A Homeobox protein OTX2; 99.0 1.6E-10 5.3E-15 69.2 2.5 29 2-30 39-67 (80)
112 2e1o_A Homeobox protein PRH; D 99.0 1.6E-10 5.5E-15 67.5 2.5 29 2-30 39-67 (70)
113 1ftt_A TTF-1 HD, thyroid trans 99.0 1.6E-10 5.4E-15 67.1 2.4 29 2-30 34-62 (68)
114 1bw5_A ISL-1HD, insulin gene e 99.0 1.5E-10 5.2E-15 66.8 2.2 29 2-30 35-63 (66)
115 1wh5_A ZF-HD homeobox family p 99.0 1E-10 3.6E-15 70.1 1.4 26 2-27 53-78 (80)
116 1jgg_A Segmentation protein EV 99.0 1.9E-10 6.5E-15 65.2 2.3 27 2-28 33-59 (60)
117 2dn0_A Zinc fingers and homeob 99.0 1.8E-10 6.2E-15 68.3 2.2 29 2-30 40-68 (76)
118 2m0c_A Homeobox protein arista 99.0 2.1E-10 7.3E-15 67.6 2.4 30 2-31 41-70 (75)
119 1nk2_P Homeobox protein VND; h 99.0 2.3E-10 7.7E-15 68.0 2.5 27 2-28 41-67 (77)
120 2l7z_A Homeobox protein HOX-A1 99.0 1.7E-10 5.9E-15 67.9 1.9 28 2-29 39-66 (73)
121 1zq3_P PRD-4, homeotic bicoid 99.0 1.7E-10 5.9E-15 67.0 1.8 28 2-29 34-61 (68)
122 3a01_A Homeodomain-containing 99.0 2.5E-10 8.4E-15 70.3 2.6 29 2-30 49-77 (93)
123 2ly9_A Zinc fingers and homeob 99.0 2.4E-10 8.3E-15 67.3 2.4 29 2-30 38-66 (74)
124 1wh7_A ZF-HD homeobox family p 99.0 1.1E-10 3.9E-15 69.9 1.0 26 2-27 53-78 (80)
125 1k61_A Mating-type protein alp 99.0 2.4E-10 8.2E-15 64.7 2.2 27 2-28 33-59 (60)
126 1fjl_A Paired protein; DNA-bin 99.0 1.9E-10 6.4E-15 69.0 1.9 28 2-29 50-77 (81)
127 2k40_A Homeobox expressed in E 98.9 3.1E-10 1.1E-14 65.7 2.4 29 2-30 33-61 (67)
128 2dmq_A LIM/homeobox protein LH 98.9 4E-10 1.4E-14 67.3 2.5 27 2-28 39-65 (80)
129 1b72_A Protein (homeobox prote 98.9 3.4E-10 1.2E-14 70.1 2.1 29 2-30 66-94 (97)
130 3nar_A ZHX1, zinc fingers and 98.9 4.5E-10 1.5E-14 69.4 2.4 28 2-29 57-84 (96)
131 1du6_A PBX1, homeobox protein 98.9 3.1E-10 1.1E-14 65.0 1.5 26 2-27 38-63 (64)
132 3rkq_A Homeobox protein NKX-2. 98.9 4.5E-10 1.5E-14 63.0 2.1 25 2-26 34-58 (58)
133 1le8_B Mating-type protein alp 98.9 5.2E-10 1.8E-14 67.4 2.4 29 2-30 37-65 (83)
134 1x2n_A Homeobox protein pknox1 98.9 6.5E-10 2.2E-14 65.3 2.3 27 2-28 42-68 (73)
135 1akh_A Protein (mating-type pr 98.9 5.8E-10 2E-14 63.3 2.0 25 2-26 37-61 (61)
136 1puf_B PRE-B-cell leukemia tra 98.9 9E-10 3.1E-14 64.7 2.2 28 2-29 36-63 (73)
137 1b72_B Protein (PBX1); homeodo 98.8 1.2E-09 4E-14 66.3 2.5 29 2-30 36-64 (87)
138 2dmn_A Homeobox protein TGIF2L 98.8 1.8E-09 6.1E-14 65.1 2.3 26 2-27 42-67 (83)
139 3k2a_A Homeobox protein MEIS2; 98.8 2.1E-09 7.2E-14 62.2 2.2 27 2-28 33-59 (67)
140 1wi3_A DNA-binding protein SAT 98.6 1.2E-08 4E-13 58.9 2.1 22 2-23 40-61 (71)
141 2cuf_A FLJ21616 protein; homeo 98.6 8.4E-09 2.9E-13 63.5 1.6 28 2-29 39-81 (95)
142 2lk2_A Homeobox protein TGIF1; 98.6 1.4E-08 4.9E-13 61.7 2.4 26 2-27 40-65 (89)
143 2nzz_A Penetratin conjugated G 98.5 3.5E-09 1.2E-13 54.1 -2.2 18 13-30 2-19 (37)
144 2da7_A Zinc finger homeobox pr 98.5 5.9E-08 2E-12 56.2 2.1 22 2-23 37-58 (71)
145 2da6_A Hepatocyte nuclear fact 98.4 7.3E-08 2.5E-12 60.0 2.3 21 8-28 65-85 (102)
146 1lfb_A Liver transcription fac 98.4 6.1E-08 2.1E-12 60.2 2.0 23 7-29 64-89 (99)
147 3kz3_A Repressor protein CI; f 95.1 0.02 6.8E-07 32.9 3.2 45 2-54 30-74 (80)
148 3omt_A Uncharacterized protein 94.7 0.037 1.3E-06 31.0 3.7 40 2-49 26-65 (73)
149 1y7y_A C.AHDI; helix-turn-heli 94.5 0.042 1.4E-06 30.6 3.6 39 2-48 31-69 (74)
150 2r1j_L Repressor protein C2; p 94.5 0.041 1.4E-06 30.0 3.4 39 2-48 23-61 (68)
151 3bs3_A Putative DNA-binding pr 94.4 0.045 1.5E-06 30.7 3.5 39 2-48 28-66 (76)
152 2xi8_A Putative transcription 94.4 0.044 1.5E-06 29.7 3.3 40 2-49 19-58 (66)
153 2k9q_A Uncharacterized protein 94.3 0.037 1.3E-06 31.4 3.0 39 2-48 20-58 (77)
154 2b5a_A C.BCLI; helix-turn-heli 94.3 0.048 1.6E-06 30.6 3.4 39 2-48 28-66 (77)
155 3f6w_A XRE-family like protein 94.2 0.045 1.5E-06 31.4 3.3 40 2-49 32-71 (83)
156 1adr_A P22 C2 repressor; trans 94.1 0.051 1.7E-06 30.4 3.3 39 2-48 23-61 (76)
157 3s8q_A R-M controller protein; 93.9 0.061 2.1E-06 30.7 3.4 40 2-49 29-68 (82)
158 3qq6_A HTH-type transcriptiona 93.8 0.049 1.7E-06 31.2 2.9 41 2-49 28-68 (78)
159 2ewt_A BLDD, putative DNA-bind 93.8 0.086 2.9E-06 29.1 3.8 39 2-48 26-66 (71)
160 2kpj_A SOS-response transcript 93.7 0.06 2.1E-06 31.8 3.3 24 36-59 24-47 (94)
161 3g5g_A Regulatory protein; tra 93.6 0.07 2.4E-06 32.2 3.4 40 2-49 46-85 (99)
162 3b7h_A Prophage LP1 protein 11 93.4 0.074 2.5E-06 29.9 3.2 40 2-48 25-64 (78)
163 2ofy_A Putative XRE-family tra 93.4 0.083 2.8E-06 30.4 3.4 23 37-59 30-52 (86)
164 1lmb_3 Protein (lambda repress 93.1 0.094 3.2E-06 30.6 3.3 39 2-48 35-73 (92)
165 3t76_A VANU, transcriptional r 93.0 0.1 3.4E-06 31.0 3.3 41 2-51 42-82 (88)
166 3eus_A DNA-binding protein; st 92.9 0.11 3.9E-06 30.1 3.5 40 2-49 32-71 (86)
167 3bd1_A CRO protein; transcript 92.7 0.13 4.6E-06 29.2 3.6 39 2-49 16-56 (79)
168 2wiu_B HTH-type transcriptiona 92.7 0.1 3.5E-06 30.0 3.1 21 37-57 28-48 (88)
169 3vk0_A NHTF, transcriptional r 92.6 0.097 3.3E-06 32.1 3.0 41 2-50 39-79 (114)
170 3op9_A PLI0006 protein; struct 92.6 0.12 4.1E-06 31.5 3.5 42 2-51 27-68 (114)
171 3lfp_A CSP231I C protein; tran 92.6 0.15 5.2E-06 30.2 3.9 41 2-50 19-63 (98)
172 1x57_A Endothelial differentia 92.1 0.14 4.8E-06 29.8 3.2 23 37-59 29-51 (91)
173 2ict_A Antitoxin HIGA; helix-t 92.0 0.15 5.3E-06 29.9 3.4 44 2-56 26-69 (94)
174 3ivp_A Putative transposon-rel 91.9 0.14 4.9E-06 31.8 3.2 42 2-51 30-71 (126)
175 3f52_A CLP gene regulator (CLG 91.7 0.18 6.1E-06 30.8 3.5 39 2-48 46-84 (117)
176 3mlf_A Transcriptional regulat 91.7 0.15 5.2E-06 31.3 3.2 41 2-50 41-81 (111)
177 1r69_A Repressor protein CI; g 91.7 0.16 5.6E-06 27.6 3.0 38 2-48 19-56 (69)
178 3trb_A Virulence-associated pr 91.0 0.37 1.3E-05 29.3 4.4 39 2-48 32-70 (104)
179 2a6c_A Helix-turn-helix motif; 90.9 0.2 6.9E-06 28.8 3.0 23 37-59 34-56 (83)
180 3fmy_A HTH-type transcriptiona 90.9 0.14 4.9E-06 28.8 2.3 19 2-20 29-47 (73)
181 3fym_A Putative uncharacterize 90.8 0.23 7.8E-06 31.4 3.4 44 2-51 21-68 (130)
182 2eby_A Putative HTH-type trans 90.6 0.2 6.8E-06 30.4 2.9 40 2-49 29-68 (113)
183 2wus_R RODZ, putative uncharac 90.5 0.21 7.2E-06 30.9 2.9 45 2-52 25-73 (112)
184 2ys9_A Homeobox and leucine zi 90.3 0.22 7.4E-06 28.5 2.6 28 29-56 28-55 (70)
185 2jvl_A TRMBF1; coactivator, he 90.2 0.21 7.1E-06 30.4 2.7 24 36-59 51-74 (107)
186 1zug_A Phage 434 CRO protein; 90.0 0.27 9.4E-06 26.8 2.9 38 2-48 21-58 (71)
187 3cec_A Putative antidote prote 89.9 0.31 1.1E-05 29.1 3.3 39 2-48 36-74 (104)
188 2ppx_A AGR_C_3184P, uncharacte 89.7 0.26 8.9E-06 29.3 2.8 41 2-51 48-88 (99)
189 3kxa_A NGO0477 protein, putati 89.5 0.39 1.3E-05 30.7 3.7 41 2-50 86-126 (141)
190 1neq_A DNA-binding protein NER 88.6 0.2 6.7E-06 28.7 1.6 19 38-56 26-44 (74)
191 2ef8_A C.ECOT38IS, putative tr 88.5 0.51 1.8E-05 26.6 3.4 19 2-20 28-46 (84)
192 2l49_A C protein; P2 bacteriop 88.5 0.25 8.5E-06 29.1 2.1 23 37-59 20-42 (99)
193 1b0n_A Protein (SINR protein); 88.5 0.35 1.2E-05 28.9 2.8 41 2-49 19-59 (111)
194 1y9q_A Transcriptional regulat 88.5 0.38 1.3E-05 31.9 3.2 40 2-49 29-68 (192)
195 2bnm_A Epoxidase; oxidoreducta 87.0 0.58 2E-05 31.0 3.4 39 2-48 28-67 (198)
196 2fjr_A Repressor protein CI; g 84.5 0.91 3.1E-05 29.9 3.4 19 2-20 25-43 (189)
197 2o38_A Hypothetical protein; a 83.9 0.86 2.9E-05 28.3 2.9 25 35-59 54-78 (120)
198 1dw9_A Cyanate lyase; cyanate 83.8 1.2 4.2E-05 29.3 3.7 43 2-52 31-73 (156)
199 3hug_A RNA polymerase sigma fa 82.4 1.9 6.4E-05 25.1 3.9 48 8-65 37-84 (92)
200 2ys9_A Homeobox and leucine zi 81.5 0.86 3E-05 25.9 2.0 21 2-22 38-58 (70)
201 3bdn_A Lambda repressor; repre 81.3 0.88 3E-05 31.0 2.4 44 2-57 35-78 (236)
202 2l1p_A DNA-binding protein SAT 81.2 0.92 3.2E-05 26.7 2.1 35 2-46 37-71 (83)
203 4ghj_A Probable transcriptiona 79.2 1.9 6.4E-05 26.0 3.1 19 2-20 54-72 (101)
204 3qwg_A ESX-1 secretion-associa 77.5 1.6 5.6E-05 27.2 2.6 41 2-49 29-74 (123)
205 3r1f_A ESX-1 secretion-associa 75.3 2 6.8E-05 27.2 2.6 41 2-49 31-76 (135)
206 3o9x_A Uncharacterized HTH-typ 75.1 1.9 6.5E-05 26.7 2.4 25 35-59 85-109 (133)
207 2p5t_A Putative transcriptiona 75.1 0.59 2E-05 30.2 0.0 42 2-51 19-60 (158)
208 3pxp_A Helix-turn-helix domain 73.5 2.8 9.6E-05 30.2 3.2 42 2-50 30-71 (292)
209 2o8x_A Probable RNA polymerase 71.6 3.7 0.00013 22.0 2.8 47 8-64 15-61 (70)
210 1x3u_A Transcriptional regulat 69.0 5.2 0.00018 22.1 3.1 45 8-63 16-60 (79)
211 4ich_A Transcriptional regulat 68.9 1 3.4E-05 31.9 0.0 39 2-48 48-86 (311)
212 3c57_A Two component transcrip 68.6 4 0.00014 23.9 2.7 44 8-62 27-70 (95)
213 3ulq_B Transcriptional regulat 67.9 4.7 0.00016 23.5 2.9 42 5-57 26-67 (90)
214 3u3w_A Transcriptional activat 67.5 5 0.00017 27.5 3.4 42 2-52 23-64 (293)
215 1p4w_A RCSB; solution structur 67.5 5.2 0.00018 23.9 3.0 44 7-61 33-76 (99)
216 1je8_A Nitrate/nitrite respons 66.2 6.8 0.00023 22.2 3.3 46 8-64 21-66 (82)
217 1s7o_A Hypothetical UPF0122 pr 64.5 7.4 0.00025 23.7 3.4 48 8-65 22-69 (113)
218 3hug_A RNA polymerase sigma fa 64.3 4.4 0.00015 23.4 2.2 25 2-26 58-82 (92)
219 2rnj_A Response regulator prot 63.8 9.1 0.00031 22.0 3.6 45 8-63 29-73 (91)
220 2qfc_A PLCR protein; TPR, HTH, 62.6 6.1 0.00021 27.1 3.1 41 2-51 23-63 (293)
221 3mzy_A RNA polymerase sigma-H 61.6 10 0.00034 23.5 3.8 35 31-65 121-155 (164)
222 1tc3_C Protein (TC3 transposas 61.6 3.3 0.00011 20.2 1.2 19 2-20 26-44 (51)
223 2glo_A Brinker CG9653-PA; prot 61.5 4.6 0.00016 21.3 1.8 20 2-21 30-49 (59)
224 2v79_A DNA replication protein 61.3 7.4 0.00025 24.6 3.0 48 5-56 26-73 (135)
225 1uxc_A FRUR (1-57), fructose r 61.1 7.6 0.00026 21.3 2.7 19 2-20 5-23 (65)
226 3rmq_A Uncharacterized protein 61.0 8.8 0.0003 23.8 3.2 41 2-51 65-105 (116)
227 1jko_C HIN recombinase, DNA-in 60.8 3.3 0.00011 20.6 1.1 27 35-61 22-48 (52)
228 2jpc_A SSRB; DNA binding prote 60.7 10 0.00036 19.6 3.2 25 37-61 16-40 (61)
229 1xsv_A Hypothetical UPF0122 pr 60.0 11 0.00038 22.8 3.6 48 8-65 25-72 (113)
230 2p7v_B Sigma-70, RNA polymeras 59.6 6.9 0.00024 21.1 2.4 25 2-26 30-54 (68)
231 1fse_A GERE; helix-turn-helix 57.5 8.3 0.00029 20.8 2.5 45 7-62 10-54 (74)
232 2awi_A PRGX; repressor, pherom 56.9 11 0.00036 27.0 3.6 44 2-54 21-64 (317)
233 1ku3_A Sigma factor SIGA; heli 56.9 10 0.00036 20.7 2.9 46 8-63 10-59 (73)
234 2q0o_A Probable transcriptiona 53.7 11 0.00037 25.5 3.1 45 6-61 173-217 (236)
235 1rzs_A Antirepressor, regulato 52.9 6.2 0.00021 21.1 1.4 20 36-55 12-31 (61)
236 1irz_A ARR10-B; helix-turn-hel 52.8 12 0.0004 20.8 2.6 21 7-27 42-62 (64)
237 1or7_A Sigma-24, RNA polymeras 51.8 13 0.00043 23.9 3.1 34 31-64 153-186 (194)
238 1l3l_A Transcriptional activat 51.0 11 0.00038 25.5 2.8 45 6-61 171-215 (234)
239 1rp3_A RNA polymerase sigma fa 50.7 14 0.00047 24.5 3.2 35 31-65 200-234 (239)
240 1tty_A Sigma-A, RNA polymerase 50.2 11 0.00036 21.5 2.2 25 2-26 43-67 (87)
241 3lph_A Protein REV; helix-loop 48.7 16 0.00056 20.7 2.7 14 56-69 41-54 (72)
242 2x48_A CAG38821; archeal virus 47.9 6.6 0.00022 20.1 1.0 22 35-56 32-53 (55)
243 2l8n_A Transcriptional repress 47.3 12 0.00041 20.6 2.0 23 36-58 11-33 (67)
244 3g7d_A PHPD; non heme Fe(II) d 44.9 19 0.00064 26.9 3.2 42 2-50 248-289 (443)
245 2hin_A GP39, repressor protein 44.9 7.3 0.00025 21.9 0.9 23 37-59 13-35 (71)
246 3qp6_A CVIR transcriptional re 44.4 17 0.00057 25.4 2.9 45 7-62 196-240 (265)
247 3clo_A Transcriptional regulat 44.1 21 0.00071 24.5 3.4 46 8-64 197-242 (258)
248 2lfw_A PHYR sigma-like domain; 43.6 16 0.00056 22.9 2.6 25 40-64 115-139 (157)
249 3t72_q RNA polymerase sigma fa 42.7 30 0.001 20.5 3.5 52 8-65 19-70 (99)
250 3lsg_A Two-component response 42.1 14 0.00046 21.5 1.9 20 2-21 24-43 (103)
251 3szt_A QCSR, quorum-sensing co 41.9 23 0.0008 24.0 3.3 43 6-59 173-215 (237)
252 2elh_A CG11849-PA, LD40883P; s 41.3 15 0.00052 20.9 1.9 15 41-55 45-59 (87)
253 2q1z_A RPOE, ECF SIGE; ECF sig 41.2 7.4 0.00025 24.9 0.6 31 34-64 151-181 (184)
254 2jml_A DNA binding domain/tran 39.0 16 0.00056 20.5 1.8 19 2-20 10-28 (81)
255 1j9i_A GPNU1 DBD;, terminase s 38.8 14 0.00049 19.9 1.5 47 2-60 7-55 (68)
256 2jrt_A Uncharacterized protein 38.5 16 0.00055 21.7 1.7 21 2-22 54-74 (95)
257 2ib1_A Death domain containing 38.2 13 0.00045 21.9 1.3 16 2-17 23-38 (91)
258 2pij_A Prophage PFL 6 CRO; tra 36.0 15 0.00051 19.4 1.2 20 2-21 18-37 (67)
259 2vn2_A DNAD, chromosome replic 35.1 40 0.0014 20.6 3.3 45 5-53 26-70 (128)
260 2jn6_A Protein CGL2762, transp 34.9 17 0.00059 20.9 1.5 21 2-22 28-48 (97)
261 1fad_A Protein (FADD protein); 34.1 22 0.00074 20.8 1.9 19 2-20 30-48 (99)
262 1pdn_C Protein (PRD paired); p 34.0 22 0.00075 20.9 1.9 22 2-23 38-59 (128)
263 1b0n_B Protein (SINI protein); 33.6 17 0.00059 19.6 1.2 20 2-21 20-39 (57)
264 3mn2_A Probable ARAC family tr 33.1 21 0.00071 20.9 1.7 20 2-21 23-42 (108)
265 1wxp_A THO complex subunit 1; 33.0 25 0.00086 21.1 2.0 17 2-18 34-50 (110)
266 2yqf_A Ankyrin-1; death domain 32.8 23 0.00079 21.3 1.9 19 2-20 34-52 (111)
267 4dfk_A DNA polymerase I, therm 32.8 23 0.0008 27.6 2.3 27 3-35 386-412 (540)
268 3oio_A Transcriptional regulat 32.5 21 0.00071 21.1 1.6 20 2-21 28-47 (113)
269 3oou_A LIN2118 protein; protei 32.4 21 0.00072 20.9 1.6 20 2-21 26-45 (108)
270 1ngr_A P75 low affinity neurot 32.0 21 0.00071 20.6 1.5 16 2-17 26-41 (85)
271 2k9s_A Arabinose operon regula 31.7 24 0.00083 20.5 1.8 20 2-21 25-44 (107)
272 3mkl_A HTH-type transcriptiona 31.0 25 0.00087 21.0 1.9 19 2-20 28-46 (120)
273 1ich_A TNF-1, tumor necrosis f 31.0 24 0.00081 21.8 1.7 19 2-20 30-48 (112)
274 1zs4_A Regulatory protein CII; 30.9 47 0.0016 19.3 2.9 18 37-54 27-44 (83)
275 2l4h_A Calcium and integrin-bi 30.8 29 0.00099 22.9 2.3 22 2-23 38-59 (214)
276 2of5_A Death domain-containing 30.4 28 0.00096 21.3 2.0 19 2-20 40-58 (114)
277 1nr3_A MTH0916, DNA-binding pr 30.4 1.5 5E-05 27.1 -4.1 45 2-48 10-54 (122)
278 3keo_A Redox-sensing transcrip 30.3 49 0.0017 22.5 3.4 47 2-48 37-83 (212)
279 3pv8_A DNA polymerase I; DNA p 30.3 25 0.00086 27.8 2.1 47 3-59 437-487 (592)
280 2o71_A Death domain-containing 29.6 28 0.00096 21.3 1.9 19 2-20 40-58 (115)
281 2of5_H Leucine-rich repeat and 29.5 28 0.00096 21.2 1.9 19 2-20 29-47 (118)
282 3oq9_A Tumor necrosis factor r 29.4 30 0.001 20.2 1.8 19 2-20 17-35 (86)
283 1lre_A Receptor-associated pro 29.3 68 0.0023 18.5 3.3 27 4-41 16-42 (81)
284 1qgp_A Protein (double strande 29.1 19 0.00066 20.2 1.0 15 2-16 36-50 (77)
285 1xwr_A Regulatory protein CII; 29.1 43 0.0015 19.9 2.6 19 36-54 25-43 (97)
286 1bl0_A Protein (multiple antib 29.1 27 0.00094 21.1 1.8 20 2-21 32-51 (129)
287 1bgx_T TAQ DNA polymerase; DNA 29.0 30 0.001 28.5 2.4 27 3-35 678-704 (832)
288 1k78_A Paired box protein PAX5 29.0 29 0.001 21.4 1.9 22 2-23 53-74 (149)
289 2rn7_A IS629 ORFA; helix, all 28.8 30 0.001 20.2 1.9 21 2-22 35-55 (108)
290 3ezq_B Protein FADD; apoptosis 28.8 29 0.001 21.5 1.9 19 2-20 22-40 (122)
291 2kvr_A Ubiquitin carboxyl-term 28.3 21 0.00072 22.4 1.1 25 35-59 70-94 (130)
292 1g8i_A Frequenin, neuronal cal 28.1 70 0.0024 19.9 3.7 22 2-23 15-36 (190)
293 3plu_A Ubiquitin-like modifier 28.1 25 0.00086 20.9 1.4 27 35-61 46-72 (93)
294 1hlv_A CENP-B, major centromer 27.3 32 0.0011 20.7 1.9 22 2-23 30-51 (131)
295 1qbj_A Protein (double-strande 25.9 24 0.00081 20.2 0.9 15 2-16 32-46 (81)
296 1u78_A TC3 transposase, transp 25.2 33 0.0011 20.6 1.7 21 2-22 27-47 (141)
297 3c3w_A Two component transcrip 25.2 54 0.0019 21.4 2.8 27 35-61 165-191 (225)
298 3r0a_A Putative transcriptiona 24.5 48 0.0016 20.0 2.3 42 3-52 18-60 (123)
299 4aik_A Transcriptional regulat 24.4 71 0.0024 19.8 3.2 40 5-52 25-64 (151)
300 1tuz_A Diacylglycerol kinase a 24.4 6.8 0.00023 24.4 -1.7 21 2-22 15-35 (118)
301 1l0o_C Sigma factor; bergerat 24.4 16 0.00055 24.1 0.0 31 31-61 211-241 (243)
302 1etf_B REV peptide; complex (R 24.1 45 0.0015 15.0 1.5 12 56-67 7-18 (26)
303 1fpw_A Yeast frequenin, calciu 24.0 88 0.003 19.4 3.6 22 2-23 15-36 (190)
304 2auw_A Hypothetical protein NE 23.5 27 0.00091 23.1 1.0 20 2-21 108-127 (170)
305 2kfn_A Klenow fragment of DNA 23.2 23 0.00079 27.8 0.7 28 2-35 449-476 (605)
306 1oyi_A Double-stranded RNA-bin 23.2 44 0.0015 19.3 1.8 15 2-16 35-49 (82)
307 1s6c_A KV4 potassium channel-i 23.0 95 0.0032 19.1 3.6 22 2-23 8-29 (183)
308 2qvo_A Uncharacterized protein 22.6 30 0.001 19.7 1.0 45 3-52 4-48 (95)
309 1z4h_A TORI, TOR inhibition pr 22.3 14 0.00047 20.0 -0.6 47 2-59 15-61 (66)
310 1zx4_A P1 PARB, plasmid partit 21.9 80 0.0027 21.2 3.1 41 2-44 29-79 (192)
311 2cw1_A SN4M; lambda CRO fold, 21.3 29 0.00099 19.0 0.7 21 36-56 15-35 (65)
312 1bjf_A Neurocalcin delta; calc 21.3 49 0.0017 20.7 2.0 22 2-23 15-36 (193)
313 2lfc_A Fumarate reductase, fla 21.3 31 0.0011 22.0 0.9 15 2-16 100-114 (160)
314 2vz4_A Tipal, HTH-type transcr 21.2 46 0.0016 19.7 1.7 56 2-57 6-70 (108)
315 2heo_A Z-DNA binding protein 1 21.0 49 0.0017 17.7 1.6 19 2-20 30-48 (67)
316 1r8d_A Transcription activator 20.3 47 0.0016 19.6 1.6 56 2-57 7-71 (109)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=1.8e-19 Score=108.67 Aligned_cols=63 Identities=27% Similarity=0.478 Sum_probs=56.7
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~~~~~ 72 (120)
.++.|+.+|+++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+........
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 10 NRTSFTQEQIEALEKEFE-----RTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp CCCCSCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 578999999999888877 599999999999999999999999999999999999976665543
No 2
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.77 E-value=2.1e-19 Score=101.49 Aligned_cols=54 Identities=41% Similarity=0.706 Sum_probs=49.0
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
+.|+.+|+.++...|. .++||+..++.+||..+||++.+|+|||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFL-----RQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHH-----hcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5689999999888877 49999999999999999999999999999999999985
No 3
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.9e-19 Score=105.82 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=51.7
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
++..||.+|+.++...|. .++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 6 ~r~kfT~~Ql~~Le~~F~-----~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFL-----QCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 577899999999887777 49999999999999999999999999999999999984
No 4
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.76 E-value=3.2e-19 Score=102.07 Aligned_cols=57 Identities=37% Similarity=0.589 Sum_probs=48.5
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
.++.||.+|+.++...|. .++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFS-----RTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHH-----cCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 368899999999888876 499999999999999999999999999999999999864
No 5
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.75 E-value=5.2e-19 Score=101.46 Aligned_cols=56 Identities=34% Similarity=0.522 Sum_probs=51.1
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 5 RPRTAFSSEQLARLKREFN-----ENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp --CCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4578999999999888887 4999999999999999999999999999999999986
No 6
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.75 E-value=7.9e-19 Score=101.34 Aligned_cols=56 Identities=45% Similarity=0.692 Sum_probs=52.3
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 6 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 6 TRTAYTRAQLLELEKEFL-----FNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 578999999999888877 49999999999999999999999999999999999985
No 7
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=7.6e-19 Score=99.76 Aligned_cols=55 Identities=42% Similarity=0.600 Sum_probs=51.4
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.++.|+.+|++++...|. .++||+..++++||..+||++.+|++||||||+|+|+
T Consensus 3 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 3 PRTPFTTAQLLALERKFR-----QKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999888876 4999999999999999999999999999999999987
No 8
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.75 E-value=8.8e-19 Score=102.62 Aligned_cols=59 Identities=39% Similarity=0.590 Sum_probs=53.9
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
-..++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 3 KRGRQTYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp SCTTCCCCHHHHHHHHHHHH-----HCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc-----cCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 45688999999999888877 499999999999999999999999999999999999953
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-19 Score=106.55 Aligned_cols=59 Identities=20% Similarity=0.337 Sum_probs=53.4
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~ 67 (120)
..++.|+.+|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 9 RMRTSFKHHQLRTMKSYFA-----INHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3578999999999887776 4999999999999999999999999999999999999643
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.75 E-value=1.9e-19 Score=108.63 Aligned_cols=57 Identities=26% Similarity=0.430 Sum_probs=52.9
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+++++..|. .++||+..++++||..++|++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 9 RERTTFTRAQLDVLEALFA-----KTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCSSCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 3578999999999888887 49999999999999999999999999999999999994
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.75 E-value=1.3e-18 Score=104.15 Aligned_cols=59 Identities=41% Similarity=0.511 Sum_probs=54.2
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~ 68 (120)
.++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+....
T Consensus 16 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 16 KRCPYTKHQTLELEKEFL-----FNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 578899999999888887 49999999999999999999999999999999999997654
No 12
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.75 E-value=1.1e-18 Score=102.22 Aligned_cols=60 Identities=32% Similarity=0.424 Sum_probs=54.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~ 68 (120)
..++.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+....
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 4 RTRTTFTSSQIAELEQHFL-----QGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CCSCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 3578999999999888887 59999999999999999999999999999999999996543
No 13
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=1.6e-18 Score=103.83 Aligned_cols=58 Identities=34% Similarity=0.495 Sum_probs=53.1
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~ 67 (120)
.++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 12 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 12 RRVLFTKAQTYELERRFR-----QQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 478899999999888877 4999999999999999999999999999999999998644
No 14
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.74 E-value=1.6e-18 Score=99.09 Aligned_cols=56 Identities=39% Similarity=0.496 Sum_probs=51.9
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+.+|+.++...|. .++||+..++++||..+||++.+|++||||||+|+|++
T Consensus 4 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 4 YRTAFTRDQLGRLEKEFY-----KENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 578999999999888876 49999999999999999999999999999999999984
No 15
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=1.9e-18 Score=102.18 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=52.9
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhc-ccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYV-DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~-~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
..++.|+..|+.++...|. . ++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~-----~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFN-----KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----SSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHH-----ccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 3578999999999888775 4 89999999999999999999999999999999999954
No 16
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-18 Score=102.05 Aligned_cols=57 Identities=28% Similarity=0.546 Sum_probs=52.6
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 9 RHRTIFTDEQLEALENLFQ-----ETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 3578999999999888877 49999999999999999999999999999999999984
No 17
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=2.3e-18 Score=102.15 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=52.9
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
..++.|+..|+.+++..|.. .++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 4 k~Rt~ft~~Q~~~Le~~F~~----~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 4 QTVSGPTEDQVEILEYNFNK----VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCSSCCHHHHHHHHHHHHH----TTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45789999999998877751 389999999999999999999999999999999999954
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=2.3e-18 Score=101.38 Aligned_cols=57 Identities=39% Similarity=0.660 Sum_probs=52.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+++++..|. .++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 9 r~R~~ft~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 9 GGQVRFSNDQTIELEKKFE-----TQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-----cCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 3578999999999888776 49999999999999999999999999999999999985
No 19
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.73 E-value=2.2e-18 Score=99.52 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=47.4
Q ss_pred CCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 9 LTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 9 ~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
-|.+|++++...|. .++||+..++++||..+||++++|++||||||+|+|+
T Consensus 11 ~~~~Ql~~LE~~F~-----~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFL-----QSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHH-----GGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 36789999888887 5999999999999999999999999999999999997
No 20
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-18 Score=105.40 Aligned_cols=56 Identities=41% Similarity=0.694 Sum_probs=52.1
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..||++++..|. .++||+..++++||..++|++.+|+|||||||+|+|+.
T Consensus 20 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 20 SRTVFTELQLMGLEKRFE-----KQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp SCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 578899999999888887 49999999999999999999999999999999999984
No 21
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.73 E-value=2.6e-18 Score=100.59 Aligned_cols=59 Identities=32% Similarity=0.517 Sum_probs=53.9
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
...++.|+..|+.++...|. .++||+..++.+||..+||++.+|+|||||||+|+|+..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFK-----QQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHH-----HSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 45688999999999888877 499999999999999999999999999999999999853
No 22
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=7.2e-19 Score=103.53 Aligned_cols=57 Identities=33% Similarity=0.503 Sum_probs=52.6
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 9 KKRIPYSKGQLRELEREYA-----ANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CSCCCSCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCcCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 3578999999999888887 49999999999999999999999999999999999884
No 23
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.73 E-value=8.9e-19 Score=100.80 Aligned_cols=57 Identities=37% Similarity=0.504 Sum_probs=50.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 5 r~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 5 KMRTVFSQAQLCALKDRFQ-----KQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ---CCCCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 3578999999999888877 49999999999999999999999999999999999873
No 24
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.73 E-value=3.9e-18 Score=103.01 Aligned_cols=59 Identities=31% Similarity=0.472 Sum_probs=53.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~ 67 (120)
..++.|+..|+.++...|. .++||+..++.+||..+||++.+|++||||||+|+|++..
T Consensus 20 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 20 RSRTTFSASQLDELERAFE-----RTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 3578899999999888876 4999999999999999999999999999999999999653
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.73 E-value=2.1e-18 Score=101.01 Aligned_cols=58 Identities=31% Similarity=0.589 Sum_probs=53.1
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~ 66 (120)
..++.|+..|++++...|. .++||+..++++||..+||++.+|+|||||||+|+|+..
T Consensus 5 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 5 RQRTHFTSQQLQQLEATFQ-----RNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CSCCCCCHHHHHHHHHHHT-----TCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHH-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 3578999999999888876 499999999999999999999999999999999999854
No 26
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.72 E-value=3.8e-18 Score=105.66 Aligned_cols=59 Identities=39% Similarity=0.675 Sum_probs=53.9
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~ 68 (120)
.++.|+.+|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+....
T Consensus 20 ~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 20 PRTSFTRIQVAELEKRFH-----KQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcCCCHHHHHHHHHHHH-----cCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 578999999999888877 59999999999999999999999999999999999997543
No 27
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-18 Score=101.25 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=52.4
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|++++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 9 RPRTRITDDQLRVLRQYFD-----INNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp SCSCCCCHHHHHHHHHHHH-----HCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHHH-----HCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 3578999999999888876 49999999999999999999999999999999999984
No 28
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=7.1e-19 Score=107.89 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.+|.+||.++...|. .++||+..+|++||..+||++++|+|||||||+||++.
T Consensus 17 ~~t~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 17 EKTAEQLRVLQASFL-----NSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 789999999887776 59999999999999999999999999999999999984
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=103.24 Aligned_cols=56 Identities=18% Similarity=0.254 Sum_probs=51.6
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcc----cccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVD----KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~----~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..++.|+.+|++++...|. .+ +||+..++++||..+||++.+|+|||||||+|+|+
T Consensus 10 r~Rt~ft~~Q~~~Le~~F~-----~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 10 QDRTQFSDRDLATLKKYWD-----NGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CSSCCCCHHHHHHHHHHHT-----TTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH-----hCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 3578999999999877776 48 99999999999999999999999999999999998
No 30
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-18 Score=101.78 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=52.6
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++..+|.+||.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFA-----QNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 3567899999999988887 49999999999999999999999999999999999984
No 31
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-18 Score=101.63 Aligned_cols=57 Identities=32% Similarity=0.389 Sum_probs=52.4
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 9 SSRTRFTDYQLRVLQDFFD-----ANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHHH-----cCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 3578999999999888877 49999999999999999999999999999999999874
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.72 E-value=3.5e-18 Score=103.27 Aligned_cols=57 Identities=39% Similarity=0.541 Sum_probs=51.8
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 22 r~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 22 RGRQTYTRYQTLELEKEFH-----TNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp --CCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCcccCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3578999999999888877 49999999999999999999999999999999999985
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.72 E-value=2.4e-18 Score=102.11 Aligned_cols=57 Identities=39% Similarity=0.541 Sum_probs=52.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 9 KKRVPYTKVQLKELEREYA-----TNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCSCHHHHHHHHHHHH-----HTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHh-----hCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 3578999999999888887 49999999999999999999999999999999999984
No 34
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4.1e-18 Score=106.22 Aligned_cols=58 Identities=40% Similarity=0.562 Sum_probs=53.5
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~ 67 (120)
.++.|+.+|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+...
T Consensus 37 ~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 37 LRTNFTTRQLTELEKEFH-----FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCcCHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 478999999999888887 5999999999999999999999999999999999999653
No 35
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=1.9e-18 Score=104.05 Aligned_cols=57 Identities=19% Similarity=0.303 Sum_probs=52.3
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+|+++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 19 r~Rt~ft~~Ql~~Le~~f~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 19 RLRTTITPEQLEILYQKYL-----LDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp TCCSSCCTTTHHHHHHHHH-----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 3578899999999888877 49999999999999999999999999999999999984
No 36
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.71 E-value=4.4e-18 Score=104.30 Aligned_cols=57 Identities=40% Similarity=0.660 Sum_probs=52.3
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 30 r~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 30 RQRTSYTRYQTLELEKEFH-----FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -CCCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCcCHHHHHHHHHHHh-----ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3578999999999888887 59999999999999999999999999999999999974
No 37
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=5.4e-18 Score=103.63 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=53.9
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHHHHHHh
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~~~~~~ 73 (120)
..++.|+..|++++..-|.. ...++||+..++++||..+||++.+|++||||||+|+|+.........
T Consensus 3 r~R~~ft~~q~~~Le~~f~~--h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~~ 70 (87)
T 1b72_B 3 RKRRNFNKQATEILNEYFYS--HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEA 70 (87)
T ss_dssp CCCCCCCHHHHHHHHHHHHT--TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccccccc
Confidence 35788999998885544410 014999999999999999999999999999999999999755544433
No 38
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-18 Score=102.21 Aligned_cols=57 Identities=33% Similarity=0.524 Sum_probs=52.3
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 9 KPRTIYSSFQLAALQRRFQ-----KTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CSSCSSCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCHHHHHHHHHHHc-----CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3578999999999888876 59999999999999999999999999999999999873
No 39
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=5e-18 Score=96.99 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=49.6
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhc---ccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYV---DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~---~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
+++.|+.+|++++...+. . ++||+..++++||..+||++.+|++||+|||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~-----~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFA-----KNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHH-----HTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHH-----HcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 367899999999766665 4 899999999999999999999999999999999986
No 40
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=2.4e-18 Score=100.16 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=51.5
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+.+|++++...|. .++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 6 ~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 6 VRTVLNEKQLHTLRTCYA-----ANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCCCCSHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 578999999999887776 49999999999999999999999999999999999873
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.71 E-value=5.2e-18 Score=98.99 Aligned_cols=56 Identities=34% Similarity=0.446 Sum_probs=51.9
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+.+|++++...|. .++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 4 ~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (67)
T 2k40_A 4 PRTAFTQNQIEVLENVFR-----VNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CSCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHh
Confidence 578999999999888776 59999999999999999999999999999999999984
No 42
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-18 Score=104.56 Aligned_cols=56 Identities=38% Similarity=0.498 Sum_probs=52.1
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|+.+++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 25 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 25 TRTVFSSTQLCVLNDRFQ-----RQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSSCCCHHHHHHHHHHHH-----HSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCHHHHHHHHHHHH-----hCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999888887 49999999999999999999999999999999999874
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=4.9e-18 Score=105.50 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=54.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhc---------------chhhhhhccccchhHHHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN---------------LTEVQIKTWFQNRRTKWKKQLAS 68 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~---------------l~~~~vqvWFqNrRak~rr~~~~ 68 (120)
..|+.|+..||.++++.|. .++||+..++++||..++ |++.+|++||||||+|+|+....
T Consensus 9 r~R~~ft~~ql~~Le~~F~-----~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFN-----ENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCcCCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 3578999999999888887 499999999999999999 99999999999999999996543
No 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.70 E-value=5.9e-18 Score=95.91 Aligned_cols=55 Identities=35% Similarity=0.535 Sum_probs=50.4
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
..++.|+..|+.++...|. .++||+..++++||..+||++.+|++||||||+|+|
T Consensus 4 r~Rt~~t~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 4 KPRVLFSQAQVYELERRFK-----QQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCcCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3578999999999888876 599999999999999999999999999999999975
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=102.30 Aligned_cols=56 Identities=16% Similarity=0.267 Sum_probs=51.8
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+.+||++++..|. .++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 11 ~R~~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 11 YKNKKSHEQLSALKGSFC-----RNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCccCCHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 478899999999888876 49999999999999999999999999999999999984
No 46
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=2.4e-18 Score=103.82 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=50.2
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhc----ccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYV----DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~----~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.++.|+.+|+++++..|. . ++||+..+|++||..+||++.+|+|||||||+|+++
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~-----~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 20 HRTKFTAEQKERMLALAE-----RIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCCHHHHHHHHHHHH-----HHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCccCCHHHHHHHHHHHH-----hccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 578999999999888765 4 899999999999999999999999999999999764
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.70 E-value=6.5e-18 Score=96.80 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=45.6
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
.++.|+.+|+.++...|. .++||+..++.+||..+||++.+|++||||||+++|
T Consensus 8 ~Rt~ft~~q~~~Le~~f~-----~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 8 GKSSISPQARAFLEEVFR-----RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----CCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHHH-----hCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 578899999999777766 499999999999999999999999999999999975
No 48
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=2e-18 Score=104.15 Aligned_cols=60 Identities=8% Similarity=0.047 Sum_probs=51.1
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..+|.||.+|+..++ .|..+..=.++||+..+|++||..++|++.+|+|||||||+|+++
T Consensus 19 R~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 19 RFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 357899999999998 777321111899999999999999999999999999999999764
No 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.6e-18 Score=102.58 Aligned_cols=56 Identities=25% Similarity=0.227 Sum_probs=49.3
Q ss_pred hhccCCCHHHHHHHHhhh-HhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNR-RTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~-r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..+..++.+|+++++..| . .++||+..+|++||..+||++.+|+|||||||+|+|+
T Consensus 10 k~r~r~~~~ql~~LE~~F~~-----~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVS-----VTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHH-----TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCHHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 345567778888887777 5 5999999999999999999999999999999999986
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=7.3e-18 Score=100.13 Aligned_cols=56 Identities=21% Similarity=0.276 Sum_probs=52.3
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 9 ~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 9 IRAKKTKEQLAELKVSYL-----KNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp TTCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCcCCCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 578999999999888887 49999999999999999999999999999999999984
No 51
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=102.22 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=50.0
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
-.+|.+||++++..|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 18 k~~t~~Ql~~Le~~F~-----~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFL-----KSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHHHHHHHHc-----cCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 3589999999988887 49999999999999999999999999999999999884
No 52
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=5.9e-18 Score=99.30 Aligned_cols=52 Identities=42% Similarity=0.614 Sum_probs=47.2
Q ss_pred CCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 9 LTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 9 ~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
++..|+.+++..|. .++||+...|.+||..+||++++|+|||||||+|+|+.
T Consensus 11 ~t~~ql~~LE~~F~-----~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~ 62 (69)
T 2l9r_A 11 MSHTQVIELERKFS-----HQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRK 62 (69)
T ss_dssp CCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhh
Confidence 57788888877776 49999999999999999999999999999999999874
No 53
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=98.87 Aligned_cols=56 Identities=32% Similarity=0.552 Sum_probs=51.9
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 12 ~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 12 NRTTFTSYQLEELEKVFQ-----KTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CSCSSCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 578899999999888876 49999999999999999999999999999999999984
No 54
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=1.2e-17 Score=96.36 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=41.5
Q ss_pred HHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 12 VQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 12 ~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.++.+++..|.. .++||+..+|.+||..++|+++||+|||||||+|+|+
T Consensus 10 ~~~~~LE~~F~~----~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 10 QPNAILEKVFTA----ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp CHHHHHHHHHHT----TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 455565555521 4899999999999999999999999999999999886
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.66 E-value=6e-17 Score=95.94 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=50.7
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLA 67 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~ 67 (120)
..++.|+..|+.++..-+.. ...++||+..++++||..+||++.+|++||||+|+|+|+...
T Consensus 3 r~R~~ft~~q~~~Le~~f~~--~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 3 RKRRNFNKQATEILNEYFYS--HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHH--TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCcCCHHHHHHHHHHHHH--hccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 35788999998885544410 014999999999999999999999999999999999998543
No 56
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.66 E-value=3.3e-17 Score=101.90 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=52.8
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 27 r~Rt~ft~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 27 GKICKKTPEQLHMLKSAFV-----RTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNG 83 (96)
T ss_dssp CCSSSSCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTT
T ss_pred CCCccCCHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhh
Confidence 4678999999999888877 49999999999999999999999999999999999985
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.66 E-value=2e-17 Score=100.38 Aligned_cols=57 Identities=30% Similarity=0.476 Sum_probs=49.0
Q ss_pred hhccCCCHHHHHH---HHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKT---WFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~---~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..++.|+.+++.+ ||.... .++||+..+|++||..+||++.+|+|||||+|+|+++.
T Consensus 9 k~R~~~s~~q~~~L~~~f~~~~-----~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~ 68 (83)
T 2dmn_A 9 KRKGNLPAESVKILRDWMYKHR-----FKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPD 68 (83)
T ss_dssp CCCSSCCHHHHHHHHHHHHHTT-----TTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHH
Confidence 4577899988877 555433 37999999999999999999999999999999999884
No 58
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.66 E-value=6.9e-17 Score=95.66 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=48.9
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|++++..-|.. ...++||+..++++||..+||++.+|++||||+|+|+++.
T Consensus 10 ~R~~~~~~q~~~Le~~f~~--~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 10 KRGVLPKHATNVMRSWLFQ--HIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHH--TTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 5678999988775444320 0028999999999999999999999999999999999984
No 59
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-16 Score=99.93 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=54.4
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhh---------------------cchhhhhhccccchhHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLL---------------------NLTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~---------------------~l~~~~vqvWFqNrRak~ 62 (120)
..|+.|+..|++++++.|. .++||+..+|++||..+ .|++.+|+|||||||+++
T Consensus 8 r~Rt~ft~~ql~~Le~~F~-----~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 8 RNRFKWGPASQQILYQAYD-----RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCCCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4678999999999999988 59999999999999999 799999999999999999
Q ss_pred HHHHHH
Q psy4877 63 KKQLAS 68 (120)
Q Consensus 63 rr~~~~ 68 (120)
++....
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986443
No 60
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.2e-17 Score=94.00 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=47.7
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
...+++|+.+++..|. .++||+..+|++||..+||++++|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYA-----LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHh-----cCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4567899999888876 5999999999999999999999999999999998654
No 61
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=3.5e-17 Score=99.27 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=49.4
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.++.|+..|++++..-|.. ...++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 5 rr~rft~~q~~~Le~~f~~--h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAK--NIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHH--TSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHh--hCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 4567999998886555540 0128999999999999999999999999999999999985
No 62
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=1.6e-17 Score=96.01 Aligned_cols=59 Identities=22% Similarity=0.334 Sum_probs=48.0
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..++.|+..|++++..-+.. ...++||+..++++||..+||++.+|++||+|+|+|+|+
T Consensus 5 r~R~~ft~~q~~~Le~~f~~--~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 5 IEGRHMNKQATEILNEYFYS--HLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCSSTTTHHHHHHHHHHH--TTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCcCCHHHHHHHHHHHHH--cccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 35778999888775444410 014999999999999999999999999999999999875
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.63 E-value=1.5e-16 Score=97.26 Aligned_cols=54 Identities=28% Similarity=0.334 Sum_probs=48.7
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhc---ccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYV---DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~---~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
.++.|+..|++++...|. . ++||+..++++||..+||++.+|++||||||+|+|
T Consensus 30 ~r~~ft~~q~~~Le~~f~-----~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 30 RGHRFTKENVRILESWFA-----KNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp TTCCCCHHHHHHHHHHHH-----HTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHH-----HhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 578899999988666554 4 89999999999999999999999999999999986
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.61 E-value=2.1e-16 Score=106.54 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=51.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
..|+.|+..|+.+++..|. .++||+..+|++||..+||++.+|+|||||||+|+|+
T Consensus 103 r~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 103 KKRTSIETNIRVALEKSFM-----ENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred cCccccCHHHHHHHHHHHh-----hcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 3678999999999888877 4999999999999999999999999999999999987
No 65
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=1.8e-16 Score=105.42 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=51.6
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.|+.|+..|+.+++..|. .++||+..+|++||..+||++.+|+|||||||+|+|+
T Consensus 90 ~Rt~ft~~Q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 144 (146)
T 1au7_A 90 RRTTISIAAKDALERHFG-----EHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144 (146)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCcCccHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhc
Confidence 578999999999888887 4999999999999999999999999999999999987
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.61 E-value=2.1e-16 Score=107.02 Aligned_cols=57 Identities=21% Similarity=0.158 Sum_probs=49.1
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..|+.|+..|+.++...|. .++||+..+|++||..+||++.+|+|||||||+|+|+.
T Consensus 101 r~Rt~ft~~Ql~~LE~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 157 (164)
T 2xsd_C 101 KKRTSIEVGVKGALESHFL-----KCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157 (164)
T ss_dssp -----CCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBS
T ss_pred CCceeccHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhc
Confidence 3578999999999888877 49999999999999999999999999999999999985
No 67
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=3.1e-16 Score=91.47 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=44.2
Q ss_pred CCCHHHHHH---HHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKT---WFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~---~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|+.+++++ ||.... .++||+..++++||..+||++.+|++||+|+|+|+++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~-----~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHL-----THPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHHHTT-----TSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 467766665 776433 39999999999999999999999999999999999974
No 68
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=4.8e-16 Score=89.79 Aligned_cols=53 Identities=21% Similarity=0.187 Sum_probs=47.1
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
.||.|+.+|+..+...+.. .++||+...|++||..+||++++|+|||||+|-.
T Consensus 10 ~RT~~s~eQL~~Lqs~f~~----~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 10 SRTKISLEALGILQSFIHD----VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCSHHHHHHHHHHHH----HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 4788999999987776651 3899999999999999999999999999999975
No 69
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.59 E-value=4.3e-16 Score=104.10 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=50.7
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.|+.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+||
T Consensus 96 ~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 96 RRTSFTPQAIEALNAYFE-----KNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 578899999999777776 4999999999999999999999999999999999986
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.57 E-value=8.9e-16 Score=103.02 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=51.6
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|+.|+..|+.++...|. .++||+..++++||..+||++.+|+|||||||+|+|+.
T Consensus 99 ~Rt~ft~~Q~~~Le~~F~-----~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 99 KRTSIENRVRWSLETMFL-----KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCCCCHHHHHHHHTTTT-----TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCcccCHHHHHHHHHHHc-----cCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 578999999999888876 59999999999999999999999999999999999973
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=6.1e-16 Score=96.61 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=51.0
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhh------------------hc---chhhhhhccccchhHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKL------------------LN---LTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~------------------~~---l~~~~vqvWFqNrRak~ 62 (120)
..|+.|+..|+.+++..|. .++||+...|++||.. +| |++.+|+|||||||+++
T Consensus 11 r~Rt~ft~~Ql~~LE~~F~-----~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 11 RNRFKWGPASQQILFQAYE-----RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp --CCCCCHHHHHHHHHHHT-----TCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCcCcCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4578999999999998887 5999999999999999 88 99999999999999998
Q ss_pred HHH
Q psy4877 63 KKQ 65 (120)
Q Consensus 63 rr~ 65 (120)
++.
T Consensus 86 k~k 88 (99)
T 1lfb_A 86 AFR 88 (99)
T ss_dssp SCC
T ss_pred HHh
Confidence 764
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.53 E-value=1.4e-15 Score=102.87 Aligned_cols=57 Identities=23% Similarity=0.250 Sum_probs=51.7
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
..|+.|+..|++++...|. .++||+...|++||..+||++.+|+|||||||+|+|+.
T Consensus 99 r~Rt~ft~~q~~~Le~~F~-----~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 99 KPRLVFTDVQRRTLHAIFK-----ENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp -CCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCcCCHHHHHHHHHHHh-----cCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 3578899999999888777 49999999999999999999999999999999998874
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=88.97 Aligned_cols=56 Identities=23% Similarity=0.468 Sum_probs=46.3
Q ss_pred CCCHHHHHH---HHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHHHHH
Q psy4877 8 NLTEVQIKT---WFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68 (120)
Q Consensus 8 ~~~~~~~q~---~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~~~~ 68 (120)
-|+++++++ ||.... .++||+..+|++||..+||++.||++||+|+|.|+++....
T Consensus 11 ~l~~~~~~iL~~W~~~h~-----~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHR-----YNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCHHHHHHHHHHHHHTS-----GGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhc-----cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 366666655 775433 39999999999999999999999999999999999885443
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.2e-13 Score=80.19 Aligned_cols=46 Identities=13% Similarity=0.257 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 11 EVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 11 ~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
++|+.++...|- .|++|+..++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~-----~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYA-----MNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHH-----HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----hCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 467777766666 3999999999999999999999999999999974
No 75
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.39 E-value=6.9e-14 Score=96.77 Aligned_cols=56 Identities=27% Similarity=0.322 Sum_probs=50.8
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhc---------------------chhhhhhccccchhHHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN---------------------LTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~---------------------l~~~~vqvWFqNrRak~ 62 (120)
..|+.|+..|+.++++.|. .++||+...|++||..++ |++.+|++||||||++.
T Consensus 117 r~R~~ft~~ql~~Le~~F~-----~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 117 RNRFKWGPASQQILFQAYE-----RQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCcccCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3578899999999998887 499999999999999999 99999999999999986
Q ss_pred HH
Q psy4877 63 KK 64 (120)
Q Consensus 63 rr 64 (120)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 53
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=3.2e-13 Score=101.44 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=47.4
Q ss_pred ccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 6 LLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 6 ~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
+.-|+..+++.+.+.|+ .++||+..+|++||.++||+++||+|||||||+|+|
T Consensus 369 ~~~~~~~q~~~Le~~f~-----~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFR-----RKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHh-----cCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 44678888888888876 599999999999999999999999999999999864
No 77
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=91.03 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=48.2
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhc---------------------chhhhhhccccchhHH
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN---------------------LTEVQIKTWFQNRRTK 61 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~---------------------l~~~~vqvWFqNrRak 61 (120)
..|+.|+..|++++++.|. .++||+..+|++||..++ |++.+|++||+|||+.
T Consensus 144 R~R~~ft~~ql~~Le~~F~-----~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 144 RNRFKWGPASQQILYQAYD-----RQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp CCCCCCCHHHHHHHHHHHH-----HCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCcCCCHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3578899999999888887 499999999999999988 8999999999999986
No 78
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.18 E-value=5.6e-12 Score=72.51 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=25.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.||++||||||+|+|+.
T Consensus 33 ~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 33 GLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 799999999999999999999999864
No 79
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.14 E-value=1.6e-11 Score=68.85 Aligned_cols=27 Identities=59% Similarity=1.078 Sum_probs=25.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.||++||||||+|++++
T Consensus 29 ~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 29 ALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 699999999999999999999999975
No 80
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.14 E-value=1.7e-11 Score=74.88 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||..|||++.||+|||||||+||++..+
T Consensus 43 ~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 43 RLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHhCcChHHCeecccccchHHHHHHH
Confidence 79999999999999999999999998543
No 81
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=71.48 Aligned_cols=28 Identities=57% Similarity=0.768 Sum_probs=26.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+||++.||++||||||+|+++..
T Consensus 36 ~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 36 HLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHhCCChhheeecchhhhhhhhhhh
Confidence 6999999999999999999999999764
No 82
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=2.6e-11 Score=71.38 Aligned_cols=27 Identities=37% Similarity=0.566 Sum_probs=25.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.||+|||||||+|+++.
T Consensus 41 ~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 41 GLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhCCChhhcchhhhhcccCCCCC
Confidence 799999999999999999999999864
No 83
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=69.35 Aligned_cols=26 Identities=27% Similarity=0.591 Sum_probs=24.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||..|||++.||++||||||+||++
T Consensus 36 eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 36 RLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHhhHhcccchhhhhc
Confidence 79999999999999999999999986
No 84
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.07 E-value=5.2e-11 Score=70.64 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=25.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.|||++.||++||||+|+|+++.
T Consensus 35 ~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 35 KLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 799999999999999999999999874
No 85
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.07 E-value=4.4e-11 Score=67.85 Aligned_cols=29 Identities=52% Similarity=0.984 Sum_probs=24.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||||+|+++..+
T Consensus 31 ~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 31 ELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 69999999999999999999999998653
No 86
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.06 E-value=1.5e-11 Score=63.03 Aligned_cols=21 Identities=62% Similarity=1.110 Sum_probs=17.8
Q ss_pred hhhhccccchhHHHHHHHHHH
Q psy4877 49 VQIKTWFQNRRTKWKKQLASK 69 (120)
Q Consensus 49 ~~vqvWFqNrRak~rr~~~~~ 69 (120)
+||+|||||||+|||+.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 489999999999999976553
No 87
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.05 E-value=6.2e-11 Score=67.87 Aligned_cols=27 Identities=67% Similarity=1.068 Sum_probs=25.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||..+||++.||++||||||+|+++.
T Consensus 35 ~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 35 ELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 699999999999999999999999975
No 88
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.2e-11 Score=70.98 Aligned_cols=29 Identities=48% Similarity=0.958 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||||+|+++...
T Consensus 49 ~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 49 DLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 69999999999999999999999998653
No 89
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.05 E-value=6.8e-11 Score=67.47 Aligned_cols=27 Identities=59% Similarity=0.832 Sum_probs=25.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.+|++||||+|+|+++.
T Consensus 35 ~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 35 ELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 699999999999999999999999874
No 90
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.04 E-value=7.6e-11 Score=68.87 Aligned_cols=29 Identities=45% Similarity=0.611 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||||+|+++...
T Consensus 39 ~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 39 KISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred HHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 69999999999999999999999998653
No 91
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.04 E-value=7.5e-11 Score=68.55 Aligned_cols=29 Identities=62% Similarity=1.007 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||||+|+++...
T Consensus 34 ~La~~l~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 34 EIAHALSLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCcCHhhhhHHhHHHHhHHhHhcc
Confidence 69999999999999999999999998654
No 92
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.03 E-value=8.5e-11 Score=66.84 Aligned_cols=26 Identities=54% Similarity=0.822 Sum_probs=24.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||+.+||++.+|++||||+|+|+++
T Consensus 35 ~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 35 QLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHhhhhcccccc
Confidence 69999999999999999999999986
No 93
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.03 E-value=9e-11 Score=70.82 Aligned_cols=29 Identities=59% Similarity=0.803 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.+|++||||||+|+++..+
T Consensus 54 ~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 54 ELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999998643
No 94
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.03 E-value=8.5e-11 Score=69.01 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=26.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||||+|+++...
T Consensus 34 ~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 34 LIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 69999999999999999999999998654
No 95
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.02 E-value=1.1e-10 Score=67.87 Aligned_cols=30 Identities=40% Similarity=0.883 Sum_probs=27.2
Q ss_pred CcchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 1 ~~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
.+||+.+||++.+|++||||+|+|+++...
T Consensus 34 ~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 34 EEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp THHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 379999999999999999999999998654
No 96
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.02 E-value=1.1e-10 Score=71.08 Aligned_cols=28 Identities=61% Similarity=0.984 Sum_probs=26.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+||++.+|++||||||+|+++..
T Consensus 60 ~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 60 EIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 6999999999999999999999999864
No 97
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=68.08 Aligned_cols=29 Identities=34% Similarity=0.862 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||+|+|+++...
T Consensus 39 ~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 39 QLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHCCCHHHeehccccccccccccCC
Confidence 69999999999999999999999998653
No 98
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.01 E-value=1e-10 Score=68.89 Aligned_cols=29 Identities=28% Similarity=0.603 Sum_probs=26.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||||+|+++...
T Consensus 35 ~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 35 LIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999998654
No 99
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=68.03 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=26.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.+|++||||+|+|+++..+
T Consensus 39 ~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 39 EMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 69999999999999999999999998754
No 100
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.01 E-value=1.1e-10 Score=70.04 Aligned_cols=28 Identities=57% Similarity=0.757 Sum_probs=26.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||..+||++.+|++||||||+|++++.
T Consensus 52 ~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 52 EMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 6999999999999999999999999864
No 101
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.01 E-value=1.3e-10 Score=65.37 Aligned_cols=26 Identities=62% Similarity=0.870 Sum_probs=24.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||+.+||++.||++||||+|+|+++
T Consensus 32 ~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 32 EFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 69999999999999999999999886
No 102
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=67.89 Aligned_cols=29 Identities=45% Similarity=0.619 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.+|++||||+|+|+++...
T Consensus 39 ~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 39 QLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 69999999999999999999999998643
No 103
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=69.64 Aligned_cols=28 Identities=21% Similarity=0.496 Sum_probs=26.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.|||++.||++||||||+|+++.+
T Consensus 49 ~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 49 HIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 6999999999999999999999999865
No 104
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=1.1e-10 Score=68.13 Aligned_cols=29 Identities=48% Similarity=0.745 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||+|+|+++...
T Consensus 39 ~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 39 ELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 69999999999999999999999998643
No 105
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.00 E-value=1e-10 Score=70.04 Aligned_cols=29 Identities=41% Similarity=0.922 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.+|++||||||+|+++...
T Consensus 39 ~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (80)
T 2cue_A 39 RLAAKIDLPEARIQVWFSNRRAKWRREEK 67 (80)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHhhHHHHHHHHHHHHHhh
Confidence 69999999999999999999999998643
No 106
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=71.04 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.+|++||||||+|+++...
T Consensus 45 ~La~~~~l~~~qV~vWFqNRR~k~r~~~~ 73 (89)
T 2dmp_A 45 RLRVETKLSRREIDSWFSERRKLRDSMEQ 73 (89)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHhCCCHHhccHhhHhHHHHHHHHhH
Confidence 69999999999999999999999998654
No 107
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=69.58 Aligned_cols=27 Identities=30% Similarity=0.619 Sum_probs=25.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.|||++.||+|||||+|+|+++.
T Consensus 44 ~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 44 AVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 699999999999999999999999874
No 108
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.2e-10 Score=68.95 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=26.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||||+|+++...
T Consensus 39 ~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 39 RLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp HHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred HHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 69999999999999999999999998654
No 109
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=67.21 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=24.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.+|++||||||||.++.
T Consensus 35 ~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 35 KIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred HHHHHhCcChhhcCcchhcccCCCCCC
Confidence 699999999999999999999987653
No 110
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=98.99 E-value=1.1e-10 Score=69.45 Aligned_cols=28 Identities=61% Similarity=0.983 Sum_probs=26.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+||++.||++||||||+|+++..
T Consensus 45 ~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 45 EVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 6999999999999999999999998753
No 111
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.99 E-value=1.6e-10 Score=69.20 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.+|++||||||+|+++...
T Consensus 39 ~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 39 EVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred HHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 69999999999999999999999998644
No 112
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.99 E-value=1.6e-10 Score=67.45 Aligned_cols=29 Identities=55% Similarity=1.026 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||||+|+++...
T Consensus 39 ~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 39 RLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 69999999999999999999999997643
No 113
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.99 E-value=1.6e-10 Score=67.14 Aligned_cols=29 Identities=45% Similarity=0.723 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||..+||++.+|++||||||+|+++...
T Consensus 34 ~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 34 HLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 69999999999999999999999998653
No 114
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.98 E-value=1.5e-10 Score=66.79 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||+|+|+++.+.
T Consensus 35 ~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 35 QLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred HHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 68999999999999999999999998754
No 115
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.98 E-value=1e-10 Score=70.10 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=24.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||+.|||++.||+|||||+|+|+++
T Consensus 53 ~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 53 RFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp HHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred HHHHHhCCCcccccCCccccCcCCCC
Confidence 79999999999999999999998875
No 116
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.97 E-value=1.9e-10 Score=65.16 Aligned_cols=27 Identities=59% Similarity=0.775 Sum_probs=25.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.+|++||||+|+|++++
T Consensus 33 ~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 33 ELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 699999999999999999999999874
No 117
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.8e-10 Score=68.30 Aligned_cols=29 Identities=24% Similarity=0.623 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||||+|+++...
T Consensus 40 ~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 40 HLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 69999999999999999999999998643
No 118
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=67.63 Aligned_cols=30 Identities=40% Similarity=0.939 Sum_probs=27.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKY 31 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~y 31 (120)
+||..+||++.+|++||||+|+|+++....
T Consensus 41 ~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 41 QLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 699999999999999999999999987664
No 119
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.97 E-value=2.3e-10 Score=68.03 Aligned_cols=27 Identities=48% Similarity=0.733 Sum_probs=25.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||..+||++.||++||||||+|+++.
T Consensus 41 ~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 41 HLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 699999999999999999999999874
No 120
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=98.96 E-value=1.7e-10 Score=67.89 Aligned_cols=28 Identities=50% Similarity=0.659 Sum_probs=26.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||..+||++.||++||||||+|+++..
T Consensus 39 ~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 39 RISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp HHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 6999999999999999999999999864
No 121
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.96 E-value=1.7e-10 Score=66.98 Aligned_cols=28 Identities=43% Similarity=0.720 Sum_probs=26.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||..+||++.+|++||||||+|+++..
T Consensus 34 ~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 34 DLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 6999999999999999999999998753
No 122
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.96 E-value=2.5e-10 Score=70.27 Aligned_cols=29 Identities=52% Similarity=0.963 Sum_probs=27.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||..+||++.||+|||||||+|+++...
T Consensus 49 ~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 49 ALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 69999999999999999999999998655
No 123
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=67.32 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=26.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||..+||++.||++||||||+|+++...
T Consensus 38 ~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 38 RLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 69999999999999999999999998654
No 124
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=98.96 E-value=1.1e-10 Score=69.92 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=24.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||..|||++.||+|||||||+|+++
T Consensus 53 ~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 53 QFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp HHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred HHHHHhCcCcCcccccccccccCCCC
Confidence 79999999999999999999998874
No 125
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.96 E-value=2.4e-10 Score=64.71 Aligned_cols=27 Identities=44% Similarity=0.661 Sum_probs=25.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.||++||||+|+|+++.
T Consensus 33 ~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 33 NLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 699999999999999999999999864
No 126
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=98.95 E-value=1.9e-10 Score=68.99 Aligned_cols=28 Identities=46% Similarity=0.796 Sum_probs=26.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+||++.||++||||||+|++++.
T Consensus 50 ~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 50 ELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 6999999999999999999999999764
No 127
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.94 E-value=3.1e-10 Score=65.66 Aligned_cols=29 Identities=45% Similarity=0.728 Sum_probs=26.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.+|++||||+|+|+++...
T Consensus 33 ~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 33 DLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 68999999999999999999999998643
No 128
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=67.32 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=25.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.|||++.+|++||||||+|++++
T Consensus 39 ~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 39 QLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 699999999999999999999999985
No 129
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=98.92 E-value=3.4e-10 Score=70.08 Aligned_cols=29 Identities=48% Similarity=0.790 Sum_probs=26.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.|||++.||++||||||+|+++...
T Consensus 66 ~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 66 EIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 69999999999999999999999997643
No 130
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.91 E-value=4.5e-10 Score=69.45 Aligned_cols=28 Identities=32% Similarity=0.646 Sum_probs=26.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||..|||++.||++||||||+|+++.+
T Consensus 57 ~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 57 KLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 6999999999999999999999999864
No 131
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=3.1e-10 Score=65.05 Aligned_cols=26 Identities=38% Similarity=0.721 Sum_probs=24.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||+.+||++.||++||||+|+|++|
T Consensus 38 ~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 38 ELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp HHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 69999999999999999999999876
No 132
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=98.91 E-value=4.5e-10 Score=62.98 Aligned_cols=25 Identities=56% Similarity=0.891 Sum_probs=23.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~ 26 (120)
+||..+||++.||++||||+|+|++
T Consensus 34 ~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 34 QLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcCHHHHHHhhHHhhccCC
Confidence 6999999999999999999999864
No 133
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.90 E-value=5.2e-10 Score=67.39 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=26.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||..+||++.||++||||+|+|+++...
T Consensus 37 ~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 37 NLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHCCCHHHcccccHHHHcccccccc
Confidence 69999999999999999999999998654
No 134
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.88 E-value=6.5e-10 Score=65.31 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=25.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||+.+||++.||++||||+|+|+++.
T Consensus 42 ~La~~~~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 42 QIAAQTNLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHhHHHHhhcccc
Confidence 699999999999999999999999864
No 135
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=98.88 E-value=5.8e-10 Score=63.28 Aligned_cols=25 Identities=36% Similarity=0.721 Sum_probs=22.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~ 26 (120)
+||+.+||++.||++||||+|+|++
T Consensus 37 ~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 37 EVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCcCHHHHHHHHHHHHhccC
Confidence 6999999999999999999999874
No 136
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.85 E-value=9e-10 Score=64.69 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=25.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+||++.||++||||+|+|+++..
T Consensus 36 ~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 36 ELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 6999999999999999999999998754
No 137
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.84 E-value=1.2e-09 Score=66.25 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=26.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~ 30 (120)
+||+.+||++.||++||||+|+|+++...
T Consensus 36 ~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 36 ELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 69999999999999999999999998643
No 138
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.80 E-value=1.8e-09 Score=65.06 Aligned_cols=26 Identities=38% Similarity=0.517 Sum_probs=24.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||..|||++.||++||||+|+|+++
T Consensus 42 ~LA~~~gLs~~qV~~WFqNrR~r~k~ 67 (83)
T 2dmn_A 42 MLSEKTNLSLLQISNWFINARRRILP 67 (83)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHCcCHHHhhHHhhhhHhhhcH
Confidence 69999999999999999999999876
No 139
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.78 E-value=2.1e-09 Score=62.22 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=25.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+||..+||++.||++||||+|+|+++.
T Consensus 33 ~La~~~~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 33 QLAQDTGLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCcCHHHhhhhhHHHHHHHhHH
Confidence 699999999999999999999998864
No 140
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.63 E-value=1.2e-08 Score=58.88 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.5
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+||+.|||++++|||||||+|-
T Consensus 40 ~La~~tGL~~~~IqVWFQNrR~ 61 (71)
T 1wi3_A 40 TLSAQLDLPKHTIIKFFQNQRY 61 (71)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHhhcccee
Confidence 6999999999999999999983
No 141
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.63 E-value=8.4e-09 Score=63.52 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=25.5
Q ss_pred cchhccC---------------CCHHHHHHHHhhhHhhhhhcc
Q psy4877 2 ELSKLLN---------------LTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 2 ~la~~~~---------------~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+||+.+| |++.+|++||||||+|+++..
T Consensus 39 ~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 39 EIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp HHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 6889999 999999999999999998754
No 142
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=61.72 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=24.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~ 27 (120)
+||+.|||++.||++||+|+|+|+++
T Consensus 40 ~LA~~tgLt~~QV~~WF~NrR~R~kk 65 (89)
T 2lk2_A 40 LLSQQTHLSTLQVCNWFINARRRLLP 65 (89)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999988875
No 143
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.50 E-value=3.5e-09 Score=54.13 Aligned_cols=18 Identities=67% Similarity=1.038 Sum_probs=15.9
Q ss_pred HHHHHHhhhHhhhhhccc
Q psy4877 13 QIKTWFQNRRTKWKYVDK 30 (120)
Q Consensus 13 ~~q~~fq~~r~k~~~~~~ 30 (120)
||+||||||||||+|.+.
T Consensus 2 QVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 2 QIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CTTTTTTCSHHHHTSSHH
T ss_pred CceeccHHHHHHHHHHhH
Confidence 789999999999998644
No 144
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=5.9e-08 Score=56.21 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=20.9
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+||+.|||+++.|+|||||+|+
T Consensus 37 ~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 37 KISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhhccc
Confidence 6899999999999999999996
No 145
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=7.3e-08 Score=59.98 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHhhhHhhhhhc
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYV 28 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~ 28 (120)
+++|.+|++||||||+|+++.
T Consensus 65 ~lte~~V~~WFqNRR~k~kr~ 85 (102)
T 2da6_A 65 LVTEVRVYNWFANRRKEEAFR 85 (102)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeeeecchHHHHHHh
Confidence 799999999999999988864
No 146
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.44 E-value=6.1e-08 Score=60.17 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.7
Q ss_pred cC---CCHHHHHHHHhhhHhhhhhcc
Q psy4877 7 LN---LTEVQIKTWFQNRRTKWKYVD 29 (120)
Q Consensus 7 ~~---~~~~~~q~~fq~~r~k~~~~~ 29 (120)
+| +++.+|++||||||+|.++..
T Consensus 64 lg~~~lse~qV~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 64 LGSNLVTEVRVYNWFANRRKEEAFRH 89 (99)
T ss_dssp TGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred cCccccCcceeeeccHHHHHHHHHhc
Confidence 88 999999999999999887654
No 147
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=95.07 E-value=0.02 Score=32.87 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=26.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTW 54 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvW 54 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++...+--|
T Consensus 30 ~lA~~~gvs~~~is~~e~g~--------~~~~~~~~~~ia~~l~v~~~~l~~~ 74 (80)
T 3kz3_A 30 SVADKMGMGQSAVAALFNGI--------NALNAYNAALLAKILKVSVEEFSPS 74 (80)
T ss_dssp HHHHHTTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred HHHHHhCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHhCCCHHHHhHH
Confidence 46666666666666666652 3455556666666666665444333
No 148
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=94.75 E-value=0.037 Score=30.99 Aligned_cols=40 Identities=18% Similarity=0.313 Sum_probs=33.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|.-|+.+. ..|+...-..||..+|++..
T Consensus 26 ~lA~~~gis~~~is~~e~g~--------~~~~~~~l~~ia~~l~v~~~ 65 (73)
T 3omt_A 26 WLTETLDKNKTTVSKWCTND--------VQPSLETLFDIAEALNVDVR 65 (73)
T ss_dssp HHHHHTTCCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTSCGG
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 68899999999999998883 35888888889998888764
No 149
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=94.54 E-value=0.042 Score=30.56 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=23.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+ ...|+...-..||..+|++.
T Consensus 31 ~lA~~~gis~~~i~~~e~g--------~~~~~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 31 TLAFLSGLDRSYVGGVERG--------QRNVSLVNILKLATALDIEP 69 (74)
T ss_dssp HHHHHHTCCHHHHHHHHTT--------CSCCBHHHHHHHHHHTTSCG
T ss_pred HHHHHHCcCHHHHHHHHCC--------CCCCCHHHHHHHHHHhCcCH
Confidence 4566666666666666655 23455555566666666554
No 150
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=94.49 E-value=0.041 Score=30.02 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=25.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+ ...|+...-..||..+|++.
T Consensus 23 ~lA~~~gis~~~i~~~e~g--------~~~~~~~~l~~i~~~l~~~~ 61 (68)
T 2r1j_L 23 ALGKMVGVSNVAISQWERS--------ETEPNGENLLALSKALQCSP 61 (68)
T ss_dssp HHHHHHTSCHHHHHHHHTT--------SSCCBHHHHHHHHHHTTSCH
T ss_pred HHHHHHCCCHHHHHHHHcC--------CCCCCHHHHHHHHHHhCCCH
Confidence 4677777777777777766 23456666666777776655
No 151
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=94.41 E-value=0.045 Score=30.66 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=28.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+......||..+|++.
T Consensus 28 ~lA~~~gis~~~i~~~e~g~--------~~~~~~~l~~ia~~l~~~~ 66 (76)
T 3bs3_A 28 WLAEQMGKSENTISRWCSNK--------SQPSLDMLVKVAELLNVDP 66 (76)
T ss_dssp HHHHHHTCCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCH
Confidence 57777888888887777763 3466777777777777765
No 152
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=94.36 E-value=0.044 Score=29.69 Aligned_cols=40 Identities=23% Similarity=0.242 Sum_probs=29.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ..|+...-..|+..+|++..
T Consensus 19 ~lA~~~gis~~~i~~~e~g~--------~~~~~~~l~~i~~~l~~~~~ 58 (66)
T 2xi8_A 19 ELAALLEVSRQTINGIEKNK--------YNPSLQLALKIAYYLNTPLE 58 (66)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------CCCCHHHHHHHHHHTTSCHH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 57888888888888888773 35677777778888877664
No 153
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=94.32 E-value=0.037 Score=31.41 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=22.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+......||..+|++.
T Consensus 20 ~lA~~~gis~~~i~~~e~g~--------~~p~~~~l~~ia~~l~v~~ 58 (77)
T 2k9q_A 20 SVAEEMGISRQQLCNIEQSE--------TAPVVVKYIAFLRSKGVDL 58 (77)
T ss_dssp HHHHHHTSCHHHHHHHHTCC--------SCCHHHHHHHHHHHTTCCH
T ss_pred HHHHHhCCCHHHHHHHHcCC--------CCCCHHHHHHHHHHhCcCH
Confidence 45666666666666666552 2355555556666666554
No 154
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=94.27 E-value=0.048 Score=30.60 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++.
T Consensus 28 ~lA~~~gis~~~i~~~e~g~--------~~~~~~~l~~la~~l~~~~ 66 (77)
T 2b5a_A 28 ELADLAGLHRTYISEVERGD--------RNISLINIHKICAALDIPA 66 (77)
T ss_dssp HHHHHHTCCHHHHHHHHTTC--------SCCBHHHHHHHHHHTTCCH
T ss_pred HHHHHHCCCHHHHHHHHCCC--------CCCCHHHHHHHHHHhCcCH
Confidence 46777777777777777662 3466666666777776665
No 155
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=94.24 E-value=0.045 Score=31.35 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=30.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++..
T Consensus 32 elA~~~gis~~~is~~e~g~--------~~~~~~~l~~l~~~l~~~~~ 71 (83)
T 3f6w_A 32 ELAARLGRPQSFVSKTENAE--------RRLDVIEFMDFCRGIGTDPY 71 (83)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHcCCCHH
Confidence 57888888888888888773 35777777888888887764
No 156
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.11 E-value=0.051 Score=30.35 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=23.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++.
T Consensus 23 ~lA~~~gis~~~i~~~e~g~--------~~~~~~~l~~ia~~l~~~~ 61 (76)
T 1adr_A 23 ALGKMVGVSNVAISQWERSE--------TEPNGENLLALSKALQCSP 61 (76)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHTTSCH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCH
Confidence 45666666666666666652 2455555566666666554
No 157
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=93.92 E-value=0.061 Score=30.74 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=32.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+ ...|+...-..||..++++..
T Consensus 29 ~lA~~~gis~~~i~~~e~g--------~~~~~~~~l~~ia~~l~v~~~ 68 (82)
T 3s8q_A 29 DLAYKSNLDRTYISGIERN--------SRNLTIKSLELIMKGLEVSDV 68 (82)
T ss_dssp HHHHHHTCCHHHHHHHHTT--------CCCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHhCcCHHHHHHHHCC--------CCCCCHHHHHHHHHHHCcCHH
Confidence 5788888888888888887 346788888888888888764
No 158
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=93.80 E-value=0.049 Score=31.20 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=33.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ...|+......||..++++..
T Consensus 28 elA~~~gis~~~is~~E~G~-------~~~p~~~~l~~ia~~l~v~~~ 68 (78)
T 3qq6_A 28 ELAEKAGVAKSYLSSIERNL-------QTNPSIQFLEKVSAVLDVSVH 68 (78)
T ss_dssp HHHHHHTCCHHHHHHHHTTS-------CCCCBHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCcCHHHHHHHHcCC-------CCCCCHHHHHHHHHHHCcCHH
Confidence 68899999999999888872 246888888889999888764
No 159
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=93.76 E-value=0.086 Score=29.06 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=28.3
Q ss_pred cchhccC--CCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLN--LTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~--~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++| ++...|..|+... ..|+...-..||..+|++.
T Consensus 26 ~lA~~~g~~is~~~i~~~e~g~--------~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 26 GVEEKSQGRWKAVVVGSYERGD--------RAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp HHHHHTTTSSCHHHHHHHHHTC--------SCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHCCcCCHHHHHHHHCCC--------CCCCHHHHHHHHHHHCcCH
Confidence 5777788 7887787777773 3567777777777777765
No 160
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=93.74 E-value=0.06 Score=31.79 Aligned_cols=24 Identities=17% Similarity=0.475 Sum_probs=15.2
Q ss_pred HHHHHhhhhcchhhhhhccccchh
Q psy4877 36 KRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
...+||..+|++...|..|..+++
T Consensus 24 sq~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 24 TQLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHCcCHHHHHHHHhCCC
Confidence 345666677777766666666543
No 161
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=93.63 E-value=0.07 Score=32.16 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=31.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ..|+......||..+|++..
T Consensus 46 elA~~~gis~~~is~iE~G~--------~~ps~~~l~~ia~~l~v~~~ 85 (99)
T 3g5g_A 46 DLAYKSNLDRTYISGIERNS--------RNLTIKSLELIMKGLEVSDV 85 (99)
T ss_dssp HHHHHHTCCHHHHHHHHTTC--------SCCBHHHHHHHHHHTTCCHH
T ss_pred HHHHHHCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 57888888888888888873 46788888888888888764
No 162
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=93.44 E-value=0.074 Score=29.86 Aligned_cols=40 Identities=15% Similarity=0.321 Sum_probs=23.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ...|+...-..||..+|++.
T Consensus 25 ~lA~~~gis~~~i~~~e~g~-------~~~~~~~~l~~ia~~l~~~~ 64 (78)
T 3b7h_A 25 RVATLAGLNQSTVNAMFEGR-------SKRPTITTIRKVCGTLGISV 64 (78)
T ss_dssp HHHHHHTCCHHHHHHHHCTT-------CCCCCHHHHHHHHHHHTCCH
T ss_pred HHHHHHCcCHHHHHHHHcCC-------CCCCCHHHHHHHHHHcCCCH
Confidence 46666666666666666652 11455666666666666655
No 163
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=93.42 E-value=0.083 Score=30.45 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=15.7
Q ss_pred HHHHhhhhcchhhhhhccccchh
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrR 59 (120)
..+||..+|++...|..|-.+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 34677777777777777776654
No 164
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=93.07 E-value=0.094 Score=30.55 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=25.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++.
T Consensus 35 ~lA~~~gis~~~is~~e~g~--------~~~~~~~l~~ia~~l~v~~ 73 (92)
T 1lmb_3 35 SVADKMGMGQSGVGALFNGI--------NALNAYNAALLAKILKVSV 73 (92)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTSCG
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCCCH
Confidence 46777777777777777662 3466666666777777665
No 165
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=92.97 E-value=0.1 Score=30.97 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=28.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
|||+++|++...|..|+.+. .++......||..++++...+
T Consensus 42 eLA~~~GiS~~tis~iE~G~---------~~s~~~l~kIa~~L~v~~~~L 82 (88)
T 3t76_A 42 ELREAVGVSKSTFAKLGKNE---------NVSLTVLLAICEYLNCDFGDI 82 (88)
T ss_dssp HHHHHHTCCHHHHHHHHTTC---------CCCHHHHHHHHHHHTCCGGGT
T ss_pred HHHHHHCcCHHHHHHHHcCC---------CcCHHHHHHHHHHHCcCHHHH
Confidence 57777888887777777761 256777777777777776543
No 166
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=92.93 E-value=0.11 Score=30.14 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=31.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ..|+...-..|+..+|++..
T Consensus 32 elA~~~gis~~~is~~E~G~--------~~p~~~~l~~ia~~l~v~~~ 71 (86)
T 3eus_A 32 DLAERLDKPQSFVAKVETRE--------RRLDVIEFAKWMAACEGLDV 71 (86)
T ss_dssp HHHHHTTCCHHHHHHHHTTS--------SCCBHHHHHHHHHHTTCGGG
T ss_pred HHHHHhCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHcCCCcH
Confidence 68888888888888888873 46778888888888887653
No 167
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=92.69 E-value=0.13 Score=29.19 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=29.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhc--chhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN--LTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~--l~~~ 49 (120)
+||+++|++...|..|+.+. ..| ...-..|+..+| ++..
T Consensus 16 ~lA~~lgvs~~~is~~e~g~--------~~p-~~~l~~ia~~l~~~v~~~ 56 (79)
T 3bd1_A 16 ALAASLGVRQSAISNWRARG--------RVP-AERCIDIERVTNGAVICR 56 (79)
T ss_dssp HHHHHHTCCHHHHHHHHHHT--------CCC-GGGHHHHHHHTTTSSCHH
T ss_pred HHHHHHCCCHHHHHHHHHCC--------CCC-HHHHHHHHHHHCCCCcHH
Confidence 57888888888888888773 355 666777888888 7664
No 168
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=92.69 E-value=0.1 Score=30.05 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=10.9
Q ss_pred HHHHhhhhcchhhhhhccccc
Q psy4877 37 RMELSKLLNLTEVQIKTWFQN 57 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqN 57 (120)
..+||..+|++...|..|..+
T Consensus 28 q~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHhCCCHHHHHHHHcC
Confidence 344555555555555555544
No 169
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=92.62 E-value=0.097 Score=32.10 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=32.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
+||+++|++...|..|+.++ ..|+...-..||..+|++...
T Consensus 39 elA~~~gis~~~is~~E~G~--------~~p~~~~l~~ia~~l~v~~~~ 79 (114)
T 3vk0_A 39 ELARQCGLDRTYVSAVERKR--------WNIALSNIEKMAAALGVAAYQ 79 (114)
T ss_dssp HHHHHHTCCHHHHHHHTTTC--------CCCCHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHhCCCHHH
Confidence 68888888888888888873 357888888888888887743
No 170
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=92.60 E-value=0.12 Score=31.47 Aligned_cols=42 Identities=14% Similarity=0.335 Sum_probs=35.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++...+
T Consensus 27 ~lA~~~gis~~~i~~~e~g~--------~~p~~~~l~~la~~l~v~~~~l 68 (114)
T 3op9_A 27 QIAELLNVQTRTVAYYMSGE--------TKPDIEKLIRLATYFHLSIDEL 68 (114)
T ss_dssp HHHHHHTSCHHHHHHHHHTS--------SCCCHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHhCCCHHHH
Confidence 68999999999999999984 4588888899999999887544
No 171
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=92.60 E-value=0.15 Score=30.21 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=35.6
Q ss_pred cchhccCCCHHH----HHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQ----IKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~----~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
+||+++|++... |.-|+.+ ...|+...-..||..+|++..-
T Consensus 19 ~lA~~~gis~~~~~~~is~~E~g--------~~~p~~~~l~~la~~l~v~~~~ 63 (98)
T 3lfp_A 19 KLGVLAGIDEASASARMNQYEKG--------KHAPDFEMANRLAKVLKIPVSY 63 (98)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHT--------SSCCCHHHHHHHHHHHTSCGGG
T ss_pred HHHHHhCCCcchhhhHHHHHHCC--------CCCCCHHHHHHHHHHHCcCHHH
Confidence 689999999999 9999988 3478899999999999998743
No 172
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=92.09 E-value=0.14 Score=29.84 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=13.3
Q ss_pred HHHHhhhhcchhhhhhccccchh
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrR 59 (120)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 44566666666666666655543
No 173
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=92.04 E-value=0.15 Score=29.86 Aligned_cols=44 Identities=11% Similarity=0.337 Sum_probs=36.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhcccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFq 56 (120)
+||+++|++...|..|+.+ ...|+......|+..+|++. ..||-
T Consensus 26 ~lA~~~gis~~~is~~e~g--------~~~~~~~~~~~i~~~l~v~~---~~~l~ 69 (94)
T 2ict_A 26 EFARAMEIAPSTASRLLTG--------KAALTPEMAIKLSVVIGSSP---QMWLN 69 (94)
T ss_dssp HHHHHHTCCHHHHHHHHHT--------SSCCCHHHHHHHHHHTCSCH---HHHHH
T ss_pred HHHHHhCCCHHHHHHHHcC--------CCCCCHHHHHHHHHHHCcCH---HHHHH
Confidence 6899999999999999988 34678888888999999876 34774
No 174
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=91.86 E-value=0.14 Score=31.76 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=35.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++...+
T Consensus 30 ~lA~~~gis~~~is~~E~g~--------~~p~~~~l~~ia~~l~v~~~~l 71 (126)
T 3ivp_A 30 QVGAMIEIDPRYLTNIENKG--------QHPSLQVLYDLVSLLNVSVDEF 71 (126)
T ss_dssp HHHHHHTCCHHHHHHHHHSC--------CCCCHHHHHHHHHHHTCCSHHH
T ss_pred HHHHHhCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHHCcCHHHH
Confidence 68999999999999999883 4688888889999999887544
No 175
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=91.75 E-value=0.18 Score=30.84 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=31.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++.
T Consensus 46 ~lA~~~gis~~~is~~E~g~--------~~~~~~~l~~la~~l~v~~ 84 (117)
T 3f52_A 46 ELAEASRVSPGYLSELERGR--------KEVSSELLASVCHALGASV 84 (117)
T ss_dssp HHHHHTTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTCCH
T ss_pred HHHHHHCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHhCCCH
Confidence 68888899888888888873 3678888888888888876
No 176
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=91.73 E-value=0.15 Score=31.25 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=35.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++...
T Consensus 41 elA~~~gis~~~is~~E~G~--------~~ps~~~l~~ia~~l~v~~~~ 81 (111)
T 3mlf_A 41 ELGDLFKVSSRTIQNMEKDS--------TNIKDSLLSKYMSAFNVKYDD 81 (111)
T ss_dssp HHHHHHTSCHHHHHHHHHCC--------TTCCHHHHHHHHHHHTCCGGG
T ss_pred HHHHHHCcCHHHHHHHHCCC--------CCCCHHHHHHHHHHhCcCHHH
Confidence 68999999999999999984 468888899999999988754
No 177
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=91.72 E-value=0.16 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=26.1
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+.+ .|+.. -..||..++++.
T Consensus 19 ~lA~~~gis~~~i~~~e~g~~--------~~~~~-l~~la~~l~~~~ 56 (69)
T 1r69_A 19 ELAQKVGTTQQSIEQLENGKT--------KRPRF-LPELASALGVSV 56 (69)
T ss_dssp HHHHHHTSCHHHHHHHHTTSC--------SSCTT-HHHHHHHTTCCH
T ss_pred HHHHHHCcCHHHHHHHHcCCC--------CCchH-HHHHHHHHCcCH
Confidence 577788888888888877732 24444 666777777765
No 178
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=91.04 E-value=0.37 Score=29.27 Aligned_cols=39 Identities=15% Similarity=0.345 Sum_probs=34.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.++ ..|+...-..||..+|++.
T Consensus 32 eLA~~lGis~~~is~ie~G~--------~~~s~~~~~kla~~lgvs~ 70 (104)
T 3trb_A 32 QLAKHLAIPTNRVTAILNGA--------RSITADTALRLAKFFGTTP 70 (104)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTCCH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCH
Confidence 68999999999999999884 3688888999999999985
No 179
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=90.93 E-value=0.2 Score=28.78 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=13.2
Q ss_pred HHHHhhhhcchhhhhhccccchh
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrR 59 (120)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45556666666666666655544
No 180
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=90.86 E-value=0.14 Score=28.77 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=10.4
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
|||+++|++...|.-|+..
T Consensus 29 elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 29 EASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp HHHHHHCSCTTHHHHHHTT
T ss_pred HHHHHhCcCHHHHHHHHcC
Confidence 4555555555555555555
No 181
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=90.80 E-value=0.23 Score=31.37 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=34.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccch----hHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV----SKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~----~~r~~La~~~~l~~~~v 51 (120)
|||+++|++...|..|+.+.+ +..|+. ..-..+|..+|++...+
T Consensus 21 elA~~~gis~~~is~iE~g~~------~~~~~~~~~~~~l~~ia~~L~v~~~~l 68 (130)
T 3fym_A 21 ELEQRTGIKREMLVHIENNEF------DQLPNKNYSEGFIRKYASVVNIEPNQL 68 (130)
T ss_dssp HHHHHHCCCHHHHHHHHTTCG------GGSSSGGGHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCC------CCCchhhhHHHHHHHHHHHhCCCHHHH
Confidence 689999999999999999965 344433 44677899999988654
No 182
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=90.62 E-value=0.2 Score=30.41 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=34.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ..|+...-..||..+|++..
T Consensus 29 ~lA~~~gis~~~is~~e~g~--------~~~~~~~l~~la~~l~~~~~ 68 (113)
T 2eby_A 29 ELAELLHVHRNSVSALINNN--------RKLTTEMAFRLAKVFDTTVD 68 (113)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCcCHH
Confidence 68999999999999999883 46888888899999998875
No 183
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=90.52 E-value=0.21 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=34.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccc----hhHHHHHhhhhcchhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS----VSKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~----~~~r~~La~~~~l~~~~vq 52 (120)
+||+++|++...|..|+.+.+ +..|+ ......||..+|++...+-
T Consensus 25 eLA~~~gis~~~is~iE~G~~------~~~p~~~~~~~~l~~iA~~Lgv~~~~L~ 73 (112)
T 2wus_R 25 DASLFTNINPSKLKRIEEGDL------KGLDAEVYIKSYIKRYSEFLELSPDEML 73 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHTCC------TTSSCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHCcCHHHHHHHHCCCC------CCCcchhHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999864 34453 3455678999999886553
No 184
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.27 E-value=0.22 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=24.7
Q ss_pred ccccchhHHHHHhhhhcchhhhhhcccc
Q psy4877 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 29 ~~yp~~~~r~~La~~~~l~~~~vqvWFq 56 (120)
.+.+....-..|+.+..|+..+|+-||-
T Consensus 28 hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 28 HQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp TCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred hcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 5677788889999999999999999994
No 185
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=90.16 E-value=0.21 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHhhhhcchhhhhhccccchh
Q psy4877 36 KRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
...+||..+|++...|..|-.+++
T Consensus 51 sq~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 51 TQAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp CHHHHHHHHTCCHHHHHHHTTTCS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 456678888888888887777655
No 186
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=90.03 E-value=0.27 Score=26.78 Aligned_cols=38 Identities=16% Similarity=0.056 Sum_probs=22.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+.+ .|... -..|+..++++.
T Consensus 21 ~lA~~~gis~~~i~~~e~g~~--------~~~~~-l~~i~~~l~~~~ 58 (71)
T 1zug_A 21 ELATKAGVKQQSIQLIEAGVT--------KRPRF-LFEIAMALNCDP 58 (71)
T ss_dssp HHHHHHTSCHHHHHHHHTTCC--------SSCST-HHHHHHHTTSCH
T ss_pred HHHHHhCCCHHHHHHHHcCCC--------CChHH-HHHHHHHHCCCH
Confidence 466777777777777776632 13222 555666666655
No 187
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=89.88 E-value=0.31 Score=29.06 Aligned_cols=39 Identities=15% Similarity=0.317 Sum_probs=33.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+. ..|+......|+..+|++.
T Consensus 36 ~lA~~~gis~~~is~~e~g~--------~~~~~~~l~~l~~~l~v~~ 74 (104)
T 3cec_A 36 NFAEILGVSNQTIQEVINGQ--------RSITVDIAIRLGKALGNGP 74 (104)
T ss_dssp HHHHHHTSCHHHHHHHHTTS--------SCCCHHHHHHHHHHHTSCH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------cCCCHHHHHHHHHHHCcCH
Confidence 68999999999999999883 4678888889999999886
No 188
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=89.66 E-value=0.26 Score=29.29 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=23.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
+||+++|++...|..|+.+. ..|+.. -..|+..++++...+
T Consensus 48 elA~~lgvs~~~is~~E~G~--------~~p~~~-~~~l~~~l~~~~~~l 88 (99)
T 2ppx_A 48 EFSARYHIPLGTLRDWEQGR--------SEPDQP-ARAYLKIIAVDPEGT 88 (99)
T ss_dssp HHHHHHTCCHHHHHHHHTTS--------SCCCHH-HHHHHHHHHHCHHHH
T ss_pred HHHHHhCcCHHHHHHHHcCC--------CCCCHH-HHHHHHHHCcCHHHH
Confidence 46666666666666666653 234433 345666666655433
No 189
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=89.52 E-value=0.39 Score=30.74 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=33.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
+||+++|++...|..|+.+. ..|+......||..+|++...
T Consensus 86 elA~~lGis~s~is~~E~G~--------~~ps~~~l~~la~~lgv~~~~ 126 (141)
T 3kxa_A 86 ELATAAGLPQPYLSRIENSK--------QSLQDKTVQKLANALGVSPLE 126 (141)
T ss_dssp HHHHHTTCCHHHHHHHHHTC--------SCCCHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHCcCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCCCHHH
Confidence 58888899998888888883 357888888888888887743
No 190
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=88.63 E-value=0.2 Score=28.69 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=8.7
Q ss_pred HHHhhhhcchhhhhhcccc
Q psy4877 38 MELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 38 ~~La~~~~l~~~~vqvWFq 56 (120)
.+||..+|++...|..|..
T Consensus 26 ~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 3344444444444444443
No 191
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=88.52 E-value=0.51 Score=26.59 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=12.1
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||+++|++...|..|+.+
T Consensus 28 ~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 28 ELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHcC
Confidence 4666666666666666665
No 192
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=88.49 E-value=0.25 Score=29.08 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHhhhhcchhhhhhccccchh
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrR 59 (120)
..+||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45566666666666666666544
No 193
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=88.46 E-value=0.35 Score=28.93 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=31.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+. ...|+...-..||..+|++..
T Consensus 19 ~lA~~~gis~~~i~~~e~g~-------~~~p~~~~l~~ia~~l~v~~~ 59 (111)
T 1b0n_A 19 ELAEKAGVAKSYLSSIERNL-------QTNPSIQFLEKVSAVLDVSVH 59 (111)
T ss_dssp HHHHHHTCCHHHHHHHHTTC-------CSCCCHHHHHHHHHHHTCCHH
T ss_pred HHHHHHCcCHHHHHHHHcCC-------CCCCCHHHHHHHHHHHCcCHH
Confidence 68888899988888888872 235777778888888888764
No 194
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=88.45 E-value=0.38 Score=31.89 Aligned_cols=40 Identities=5% Similarity=0.071 Sum_probs=32.5
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
+||+++|++...|..|+.+ ...|+...-..||..++++..
T Consensus 29 ~lA~~~gis~~~is~~e~g--------~~~p~~~~l~~ia~~l~v~~~ 68 (192)
T 1y9q_A 29 ATAQLTGVSKAMLGQIERG--------ESSPTIATLWKIASGLEASFS 68 (192)
T ss_dssp HHHHHHSSCHHHHHHHHTT--------CSCCCHHHHHHHHHHHTCCSG
T ss_pred HHHHHHCcCHHHHHHHHcC--------CCCCCHHHHHHHHHHHCcCHH
Confidence 6888899999888888887 346788888888988888763
No 195
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=87.00 E-value=0.58 Score=31.03 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=27.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhccc-ccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK-YLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~-yp~~~~r~~La~~~~l~~ 48 (120)
+||+++|++...|..|+.+ .. .|+...-..||..++++.
T Consensus 28 ~la~~~gis~~~ls~~e~g--------~~~~p~~~~l~~ia~~l~~~~ 67 (198)
T 2bnm_A 28 ALASLLGETPETVAAWENG--------EGGELTLTQLGRIAHVLGTSI 67 (198)
T ss_dssp HHHHHHTCCHHHHHHHHTT--------TCTTCBHHHHHHHHHHTTSCT
T ss_pred HHHHHHCcCHHHHHHHHcC--------CCCCCCHHHHHHHHHHhCCCH
Confidence 5777777777777777776 23 566777777777777665
No 196
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=84.47 E-value=0.91 Score=29.85 Aligned_cols=19 Identities=5% Similarity=0.351 Sum_probs=9.8
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
|||+++|++...|..|+..
T Consensus 25 elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 25 QLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp HHHHHTTCCHHHHHHHHHS
T ss_pred HHHHHhCcCHHHHHHHHhC
Confidence 3555555555555555543
No 197
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=83.93 E-value=0.86 Score=28.33 Aligned_cols=25 Identities=4% Similarity=0.068 Sum_probs=18.4
Q ss_pred hHHHHHhhhhcchhhhhhccccchh
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
....+||..+|++...|.-|..+++
T Consensus 54 lTQ~eLA~~lGis~~~Is~iE~G~~ 78 (120)
T 2o38_A 54 LSQAAAAARLGINQPKVSALRNYKL 78 (120)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCC
Confidence 3456788888888888888877654
No 198
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=83.76 E-value=1.2 Score=29.29 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=34.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vq 52 (120)
+||+.+|+++.=+-..|.. ++-++...-+.|++.++|+...+.
T Consensus 31 ~IAe~iG~S~v~vtaa~lG--------Q~~ls~e~A~kLa~~LgL~~e~~~ 73 (156)
T 1dw9_A 31 EIADGTGLAEAFVTAALLG--------QQALPADAARLVGAKLDLDEDSIL 73 (156)
T ss_dssp HHHTTSSSCHHHHHHHHTT--------SSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhCcCHHHHHHHHcC--------CCCCCHHHHHHHHHHhCcCHHHHH
Confidence 5788888888887777777 667888888889999999886544
No 199
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=82.41 E-value=1.9 Score=25.09 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|++.+-+++.-. |-....-.++|..+|+++..|+.+...-+.+.++.
T Consensus 37 ~L~~~~r~vl~l~----------~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 37 QLSAEHRAVIQRS----------YYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp TSCHHHHHHHHHH----------HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4566555554332 33456678999999999999999887666666654
No 200
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.54 E-value=0.86 Score=25.95 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.2
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
.|..++.++-.||+.||-.+.
T Consensus 38 ~L~~kskms~qqvkdwFa~k~ 58 (70)
T 2ys9_A 38 QLSQASRLSTQQVLDWFDSRL 58 (70)
T ss_dssp HHHHHTTCCHHHHHHHHHHHS
T ss_pred HHHHHhCCCHHHHHHHHHhcc
Confidence 478899999999999997753
No 201
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=81.26 E-value=0.88 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=30.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqN 57 (120)
+||+++|++...|..|+.. ...|+......||..++++. .||-.
T Consensus 35 ~lA~~~gis~~~i~~~~~g--------~~~p~~~~l~~ia~~l~v~~----~~l~~ 78 (236)
T 3bdn_A 35 SVADKMGMGQSGVGALFNG--------INALNAYNAALLAKILKVSV----EEFSP 78 (236)
T ss_dssp HHHHHHTSCHHHHHHHTTT--------TSCCCHHHHHHTTTTTTSCG----GGTCH
T ss_pred HHHHHHCcCHHHHHHHHcC--------CCCCCHHHHHHHHHHhCcCH----HHhhc
Confidence 5777888888778777766 23566677777777777765 45543
No 202
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=81.16 E-value=0.92 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=27.3
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNL 46 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l 46 (120)
+||+++|++..-|-....+ .-+|+.. ..+|+.+|+
T Consensus 37 eLAK~iGIsqsTLSaIenG--------~~~PsL~--~kIAk~fg~ 71 (83)
T 2l1p_A 37 SLAKECPLSQSMISSIVNS--------TYYANVS--AAKCQEFGR 71 (83)
T ss_dssp HHHHHSSSCHHHHHHHHTC--------SSCCCCC--SHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHcC--------CCCCCch--HHHHHHHHH
Confidence 6899999999999988888 3457666 677777763
No 203
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=79.18 E-value=1.9 Score=26.02 Aligned_cols=19 Identities=5% Similarity=0.137 Sum_probs=9.6
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
|||+++|++...|..|+.+
T Consensus 54 eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 54 EVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCC
Confidence 3455555555555555544
No 204
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=77.46 E-value=1.6 Score=27.25 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.6
Q ss_pred cchhccC-----CCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLN-----LTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~-----~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
|||+++| ++...|.-|+.+.+ ..|+...-..||..+|++..
T Consensus 29 elA~~~~~~G~~iS~s~is~iE~G~r-------~~Ps~~~l~~iA~~f~V~~~ 74 (123)
T 3qwg_A 29 EVIAALKAEGITMSAPYLSQLRSGNR-------TNPSGATMAALANFFRIKAA 74 (123)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHTSS-------CCCCHHHHHHHHHHTTSCTH
T ss_pred HHHHHHcccCCCcCHHHHHHHHcCCC-------CCCCHHHHHHHHHHhCCCHH
Confidence 6788887 99999999988832 37999999999999999974
No 205
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=75.32 E-value=2 Score=27.25 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=34.4
Q ss_pred cchhccC-----CCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhh
Q psy4877 2 ELSKLLN-----LTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEV 49 (120)
Q Consensus 2 ~la~~~~-----~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~ 49 (120)
|||+.+| ++...|.-|+.+.+ ..|+...-..||..+|++..
T Consensus 31 elA~~~~~~G~~is~s~is~~E~G~r-------~~Ps~~~l~~iA~~f~V~~~ 76 (135)
T 3r1f_A 31 EVIAALKAEGITMSAPYLSQLRSGNR-------TNPSGATMAALANFFRIKAA 76 (135)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHTSS-------CCCCHHHHHHHHHHHTSCTH
T ss_pred HHHHHHcccCCCcCHHHHHHHHCCCC-------CCCCHHHHHHHHHHhCCCHH
Confidence 6788887 99999999988832 37999999999999999874
No 206
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=75.13 E-value=1.9 Score=26.73 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=15.6
Q ss_pred hHHHHHhhhhcchhhhhhccccchh
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
....+||..+|++...|..|-.+++
T Consensus 85 lsq~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 85 LTQKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp CCHHHHHHHHCSCTTHHHHHHHTSS
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCC
Confidence 3455666667777766666666543
No 207
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=75.08 E-value=0.59 Score=30.17 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=0.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
|||+++|++...|..|..... .|+...-..||..+|++...+
T Consensus 19 elA~~lgis~~~vs~~e~G~~--------~~~~~~~~~la~~~~v~~~~l 60 (158)
T 2p5t_A 19 EFARIVGISRNSLSRYENGTS--------SVSTELIDIICQKFNVSYVDI 60 (158)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHCcCHHHHHHHHCCCC--------CCCHHHHHHHHHHHCcCHHHH
Confidence 789999999999999977732 566777788899999887443
No 208
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=73.49 E-value=2.8 Score=30.20 Aligned_cols=42 Identities=19% Similarity=0.113 Sum_probs=35.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
|||+++|++..-|.-|++++ ...|+...-..||..++++...
T Consensus 30 elA~~~gvS~~~is~iE~G~-------~~~ps~~~l~~lA~aL~v~~~e 71 (292)
T 3pxp_A 30 VLAERTQLPKRTIERIENGS-------LAHLDADILLRLADALELTIGE 71 (292)
T ss_dssp HHHHHHTCCHHHHHHHHHTC-------CSCCCHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHCcCHHHHHHHHCCC-------CCCCCHHHHHHHHHhcCCCHHH
Confidence 68999999999999999984 2368889999999999988843
No 209
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=71.56 E-value=3.7 Score=22.02 Aligned_cols=47 Identities=13% Similarity=0.031 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.|++.+-+++.-. |.....-.++|..+|++...|..+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~----------~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLT----------QLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHH----------HTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHH----------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677666664443 3334567889999999999999888655555444
No 210
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=68.97 E-value=5.2 Score=22.07 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
.|++.+.++..--. ....-.++|..+|+++..|..+..+-+.|.+
T Consensus 16 ~L~~~e~~vl~l~~-----------~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSAVV-----------AGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHHHT-----------TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHH-----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 35666666643321 1345568899999999999888876665554
No 211
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=68.87 E-value=1 Score=31.90 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
|||+++|++...|..|+.+. ..|+...-..||..+|++.
T Consensus 48 ~la~~~g~s~~~is~~e~g~--------~~p~~~~l~~ia~~l~~~~ 86 (311)
T 4ich_A 48 EFAAAIGLDESKLSKSLNGT--------RRFSPHELVRIAEHSGVTV 86 (311)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHhCCCHHHHHHHHcCC--------CCCCHHHHHHHHHHHCCCh
Confidence 56666666666666666663 2455666666666666654
No 212
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=68.59 E-value=4 Score=23.90 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~ 62 (120)
.|++.+.+++.-... ...-.++|..+|+++..|..+..+-+.|.
T Consensus 27 ~Lt~~e~~vl~l~~~-----------g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGLLSE-----------GLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHHHHT-----------TCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-----------CCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 688888888554321 34568899999999999998775444443
No 213
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=67.88 E-value=4.7 Score=23.52 Aligned_cols=42 Identities=14% Similarity=0.063 Sum_probs=30.0
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccc
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQN 57 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqN 57 (120)
...+||+.+.+|+.--.. .....++|..+++++..|+....+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~-----------G~s~~eIA~~L~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK-----------GFTNQEIADALHLSKRSIEYSLTS 67 (90)
T ss_dssp ---CCCHHHHHHHHHHHT-----------TCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHc-----------CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345789988888554432 566788999999999999876543
No 214
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=67.48 E-value=5 Score=27.54 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=35.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vq 52 (120)
+||+++ ++...|..|+.+. ..|+...-..||..+|++...+-
T Consensus 23 ~la~~~-~s~~~~s~~e~g~--------~~~~~~~l~~i~~~l~~~~~~~~ 64 (293)
T 3u3w_A 23 QLSENI-CHQSEVSRIESGA--------VYPSMDILQGIAAKLQIPIIHFY 64 (293)
T ss_dssp HHHTTT-SCHHHHHHHHTTS--------CCCCHHHHHHHHHHHTCCTHHHH
T ss_pred HHHHHh-CCHHHHHHHHCCC--------CCCCHHHHHHHHHHhCcCHHHHh
Confidence 689999 9999999999884 46999999999999999886543
No 215
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=67.46 E-value=5.2 Score=23.87 Aligned_cols=44 Identities=16% Similarity=-0.023 Sum_probs=31.3
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
-.||+.+.+++.--.. ...-.++|..+++++..|..+..+-+.|
T Consensus 33 ~~Lt~re~~Vl~l~~~-----------G~s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 33 KRLSPKESEVLRLFAE-----------GFLVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSCCHHHHHHHHHHHH-----------TCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-----------CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3688888888544321 3456889999999999999877644443
No 216
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.18 E-value=6.8 Score=22.19 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.|++.+.++..--. ....-.++|..+|+++..|..+..+-+.|.+.
T Consensus 21 ~Lt~~e~~vl~l~~-----------~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 21 QLTPRERDILKLIA-----------QGLPNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp GSCHHHHHHHHHHT-----------TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH-----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 57888877754421 24567889999999999999888766655543
No 217
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=64.50 E-value=7.4 Score=23.73 Aligned_cols=48 Identities=10% Similarity=0.046 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|++.+.+++.-. |-....-.++|..+|++...|..+...-+.+.++.
T Consensus 22 ~L~~~~r~vl~l~----------y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELY----------YADDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHH----------HHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4677776664443 23345678899999999999999887777666653
No 218
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=64.33 E-value=4.4 Score=23.41 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=19.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~ 26 (120)
|+|+.+|+++..|+.+...-+.|.+
T Consensus 58 eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 58 QIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6899999999999987766554433
No 219
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=63.84 E-value=9.1 Score=21.97 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
.|++.+.+++.--. ....-.++|..+|+++..|+.+..+-+.|.+
T Consensus 29 ~Lt~~e~~vl~l~~-----------~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 29 MLTEREMEILLLIA-----------KGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GCCSHHHHHHHHHH-----------TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHH-----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 57777777754421 1345678899999999999888766555544
No 220
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=62.57 E-value=6.1 Score=27.12 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=35.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
+||+++ ++...|..|+.+ ...|+...-..||..+|++...+
T Consensus 23 ~la~~~-~s~~~is~~e~g--------~~~~~~~~l~~l~~~l~~~~~~l 63 (293)
T 2qfc_A 23 QLSENI-CHQSEVSRIESG--------AVYPSMDILQGIAAKLQIPIIHF 63 (293)
T ss_dssp TTTTTT-SCHHHHHHHHTS--------SSCCCHHHHHHHTTTSCCCTHHH
T ss_pred HHHHHH-cCHHHHHHHHCC--------CCCCCHHHHHHHHHHhCcCHHHH
Confidence 789999 999999999998 44688888999999999887543
No 221
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=61.60 E-value=10 Score=23.47 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=27.3
Q ss_pred ccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 31 yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
|.....-.++|..+|++...|..+...-+.+.|+.
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 44566788899999999999999887666665553
No 222
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.56 E-value=3.3 Score=20.21 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=11.4
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
++|+.+|++...|..|...
T Consensus 26 ~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 26 EMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHhh
Confidence 4566666666666665544
No 223
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=61.51 E-value=4.6 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.516 Sum_probs=13.2
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
++|.++|++...|..|...+
T Consensus 30 ~vA~~~gIs~~tl~~W~~~~ 49 (59)
T 2glo_A 30 ATARKYNIHRRQIQKWLQCE 49 (59)
T ss_dssp HHHHHTTSCHHHHHHHHTTH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 46677777777777775554
No 224
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=61.27 E-value=7.4 Score=24.60 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=33.1
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhcccc
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFq 56 (120)
+++|+++.++-+|.+=.+... ..+.+|+. ++||..+|++...|....+
T Consensus 26 ~~LgLs~~E~~lLl~L~~~~~-~g~~~ps~---~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 26 KQLGLNETELILLLKIKMHLE-KGSYFPTP---NQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp HHHTCCHHHHHHHHHHHHHHT-TTCCSCCH---HHHHTTSSSCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHh-cCCCCCCH---HHHHHHHCcCHHHHHHHHH
Confidence 468999999988877765311 11344444 5799999999988876553
No 225
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=61.11 E-value=7.6 Score=21.28 Aligned_cols=19 Identities=11% Similarity=0.247 Sum_probs=13.7
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||+++|++...|.-++.+
T Consensus 5 diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 5 EIARLAGVSRTTASYVING 23 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHcC
Confidence 5677777777777776666
No 226
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=61.03 E-value=8.8 Score=23.75 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=33.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQI 51 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~v 51 (120)
++++++|++..+|--+-+.+. -+.....+||..++++...|
T Consensus 65 e~r~~~G~p~~eI~~l~~~f~---------w~~~~~~~l~~~l~~t~~~~ 105 (116)
T 3rmq_A 65 ALAKALGWPMREISDLAHRFD---------WSPALITRLAEVLHCSFGEV 105 (116)
T ss_dssp HHHHHTTCCHHHHHHHHTTSC---------CCHHHHHHHHHHSCSCHHHH
T ss_pred HHHHhcCCCHHHhhhhhhhhc---------CCHHHHHHHHHHhcCcchhe
Confidence 689999999999988877763 34577888999999887655
No 227
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=60.82 E-value=3.3 Score=20.56 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=20.8
Q ss_pred hHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
....++|..+|++...|..|+.....+
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~~~~~ 48 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPASSIK 48 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCTTC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 346789999999999999999755443
No 228
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=60.66 E-value=10 Score=19.63 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=13.9
Q ss_pred HHHHhhhhcchhhhhhccccchhHH
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
-.++|..+|+++..|..+..+=+.|
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3455666666666666555444443
No 229
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=59.95 E-value=11 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|++.+-+++.-. |-....-.++|..+|+++..|..+...-|.+.+..
T Consensus 25 ~L~~~~r~vl~l~----------~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELF----------YLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHH----------HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH----------HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3666666654333 33355678899999999999999887767666654
No 230
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.62 E-value=6.9 Score=21.10 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=17.8
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~ 26 (120)
|+|+.+|+++..|..+...-+.|.+
T Consensus 30 eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 30 EVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 6788888888888886665544443
No 231
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=57.51 E-value=8.3 Score=20.77 Aligned_cols=45 Identities=16% Similarity=0.100 Sum_probs=31.1
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~ 62 (120)
-.|++.+.++..--. + ...-.++|..+|++...|..+..+-+.|.
T Consensus 10 ~~L~~~e~~il~~~~-------~----g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFELLV-------Q----DKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHHHT-------T----TCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-------c----CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 367888887754421 1 23567899999999999998776544443
No 232
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=56.88 E-value=11 Score=27.01 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=36.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhcc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTW 54 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvW 54 (120)
|||+++ ++...+..|+.+ ...|+...-..||..+|++...+-..
T Consensus 21 ~la~~~-is~~~is~~E~g--------~~~~~~~~l~~i~~~l~v~~~~~~~~ 64 (317)
T 2awi_A 21 DLYSGI-MSKSVYIKVEAD--------SRPISVEELSKFSERLGVNFFEILNR 64 (317)
T ss_dssp HHHTTT-SCHHHHHHHHTT--------CSCCBHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHCC--------CCCCCHHHHHHHHHHcCCCHHHHHhh
Confidence 688888 999999999988 55799999999999999987655443
No 233
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.88 E-value=10 Score=20.66 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHhhhHhhhhhccccc----chhHHHHHhhhhcchhhhhhccccchhHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYL----SVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp----~~~~r~~La~~~~l~~~~vqvWFqNrRak~r 63 (120)
.|++.+-+++.-. |- ....-.++|..+|++...|..+...-+.+.+
T Consensus 10 ~L~~~er~il~l~----------~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMR----------KGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHH----------HTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH----------HhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4677777775443 22 3456679999999999999987755554444
No 234
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=53.71 E-value=11 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=32.5
Q ss_pred ccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 6 LLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 6 ~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
...||+.+.+++.--.. ...-.++|..+|+++..|+....|-+.|
T Consensus 173 ~~~Lt~~e~~vl~~~~~-----------g~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK-----------GKTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHHT-----------TCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 34688888888544321 4566889999999999999877655544
No 235
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=52.90 E-value=6.2 Score=21.10 Aligned_cols=20 Identities=15% Similarity=0.504 Sum_probs=18.4
Q ss_pred HHHHHhhhhcchhhhhhccc
Q psy4877 36 KRMELSKLLNLTEVQIKTWF 55 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvWF 55 (120)
...+||..+|++..-|..|.
T Consensus 12 tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 12 TQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SHHHHHHHHTCCHHHHHHCC
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 46789999999999999998
No 236
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=52.81 E-value=12 Score=20.77 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=18.1
Q ss_pred cCCCHHHHHHHHhhhHhhhhh
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKY 27 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~ 27 (120)
-|+|..+|+.-.|++|.+.+|
T Consensus 42 ~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 42 DKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp TTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHc
Confidence 389999999999999976665
No 237
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.84 E-value=13 Score=23.88 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=26.6
Q ss_pred ccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 31 yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
|.....-.++|..+|+++..|..+...-|.+.|+
T Consensus 153 ~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 153 ELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp HTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445567889999999999999988766666655
No 238
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=50.96 E-value=11 Score=25.47 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=32.5
Q ss_pred ccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 6 LLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 6 ~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
...||+.+.+++.--. ....-.++|..+|+++..|+....|-+.|
T Consensus 171 ~~~Lt~~e~~vl~~~~-----------~g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIA-----------VGKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHHT-----------TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3468888888854432 14567889999999999999877654444
No 239
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=50.74 E-value=14 Score=24.45 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=27.2
Q ss_pred ccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 31 yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
|.....-.++|..+|++...|..+...-+.+.|+.
T Consensus 200 ~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 200 FYEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp HTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34456778899999999999999887666666553
No 240
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=50.19 E-value=11 Score=21.53 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=17.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~ 26 (120)
|+|+.+|++...|..+...-+.|.+
T Consensus 43 EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 43 EVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5778888888888776655444443
No 241
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=48.72 E-value=16 Score=20.65 Aligned_cols=14 Identities=29% Similarity=0.779 Sum_probs=9.7
Q ss_pred cchhHHHHHHHHHH
Q psy4877 56 QNRRTKWKKQLASK 69 (120)
Q Consensus 56 qNrRak~rr~~~~~ 69 (120)
.|||-+|+..+.+-
T Consensus 41 RNRRRRWR~RQrQI 54 (72)
T 3lph_A 41 RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 38888888765543
No 242
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=47.92 E-value=6.6 Score=20.10 Aligned_cols=22 Identities=9% Similarity=0.374 Sum_probs=18.6
Q ss_pred hHHHHHhhhhcchhhhhhcccc
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFq 56 (120)
....++|..+|++...|..|..
T Consensus 32 ~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 4567899999999999988874
No 243
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=47.30 E-value=12 Score=20.60 Aligned_cols=23 Identities=4% Similarity=0.069 Sum_probs=17.1
Q ss_pred HHHHHhhhhcchhhhhhccccch
Q psy4877 36 KRMELSKLLNLTEVQIKTWFQNR 58 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvWFqNr 58 (120)
...+||+.+|++...|..++-|+
T Consensus 11 t~~diA~~aGVS~sTVSr~ln~~ 33 (67)
T 2l8n_A 11 TMKDVALKAKVSTATVSRALMNP 33 (67)
T ss_dssp CHHHHHHHTTCCHHHHHHTTTCC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCC
Confidence 35677888888888887777665
No 244
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=44.94 E-value=19 Score=26.88 Aligned_cols=42 Identities=5% Similarity=0.060 Sum_probs=23.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQ 50 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~ 50 (120)
+||+.+|++.+.|...|-.++. -+...+-+.||+.++++.+.
T Consensus 248 ~LAe~TGIPq~hISeMenGKr~-------~IGkdeaR~LA~ALnvDYRv 289 (443)
T 3g7d_A 248 SAAEAAGVPPADLEAALRSPAS-------ETGLTVLRTLGRALGFDYRV 289 (443)
T ss_dssp HHHHHHTCCHHHHHHHHHCTTS-------HHHHHHHHHHHHHHTCCGGG
T ss_pred HHHHHhCCCHHHHHHHhcCCcC-------CccHHHHHHHHHHhCCCchh
Confidence 4677777777777666655431 11234445566666666643
No 245
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=44.93 E-value=7.3 Score=21.93 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHhhhhcchhhhhhccccchh
Q psy4877 37 RMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvWFqNrR 59 (120)
..+||+.+|++..-|.-|..++.
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~ 35 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGE 35 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC
Confidence 78899999999999999986543
No 246
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=44.39 E-value=17 Score=25.36 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=32.7
Q ss_pred cCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHH
Q psy4877 7 LNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKW 62 (120)
Q Consensus 7 ~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~ 62 (120)
..||+.+.+++..-.. ...-.++|..+|+++..|+....|=+.|.
T Consensus 196 ~~Lt~re~~vl~~~~~-----------G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSR-----------GKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHHHT-----------TCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc-----------CCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 3688888887554432 45678899999999999998776555443
No 247
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=44.13 E-value=21 Score=24.52 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
.|++.+.+++.-.. ....-+++|..+|+++..|++...+-|.|-+.
T Consensus 197 ~L~~~erevl~L~~-----------~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 197 ILSEREKEILRCIR-----------KGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp SSCHHHHHHHHHHH-----------TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHH-----------cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 67887777744421 14567889999999999999988776666554
No 248
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=43.57 E-value=16 Score=22.93 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=13.2
Q ss_pred HhhhhcchhhhhhccccchhHHHHH
Q psy4877 40 LSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 40 La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
+|..+|+++..|+.....-|.+-++
T Consensus 115 IA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 115 AAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3555555555555555544444443
No 249
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=42.74 E-value=30 Score=20.50 Aligned_cols=52 Identities=17% Similarity=0.107 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchhHHHHHH
Q psy4877 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65 (120)
Q Consensus 8 ~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrRak~rr~ 65 (120)
.|++.+-+|..-.+- .+- -....-.++|..+|++...|+.....-..+-|..
T Consensus 19 ~Lp~reR~Vi~Lry~-----l~~-~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~ 70 (99)
T 3t72_q 19 GLTAREAKVLRMRFG-----IDM-NTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 70 (99)
T ss_pred cCCHHHHHHHHHHHh-----cCC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 567766666433321 000 0134567889999999999998776666666654
No 250
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=42.10 E-value=14 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=17.3
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|+++..++..|...
T Consensus 24 ~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 24 VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999888775
No 251
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=41.94 E-value=23 Score=24.01 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=29.6
Q ss_pred ccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchh
Q psy4877 6 LLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 6 ~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
...||+.+.+++.--.. ...-.++|..+|+++..|+.-..|=+
T Consensus 173 ~~~Lt~re~~vl~~~~~-----------G~s~~eIa~~l~is~~tV~~~~~~~~ 215 (237)
T 3szt_A 173 NVRLTARETEMLKWTAV-----------GKTYGEIGLILSIDQRTVKFHIVNAM 215 (237)
T ss_dssp GCCCCHHHHHHHHHHHT-----------TCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 35677777777443321 45678899999999999987554433
No 252
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=41.27 E-value=15 Score=20.91 Aligned_cols=15 Identities=13% Similarity=0.563 Sum_probs=8.0
Q ss_pred hhhhcchhhhhhccc
Q psy4877 41 SKLLNLTEVQIKTWF 55 (120)
Q Consensus 41 a~~~~l~~~~vqvWF 55 (120)
|..+|++...|..|.
T Consensus 45 A~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 45 ARDIGVPESTLRGWC 59 (87)
T ss_dssp HHHHTCCHHHHHHHH
T ss_pred HHHHCcCHHHHHHHH
Confidence 445555555555554
No 253
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=41.18 E-value=7.4 Score=24.86 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=23.9
Q ss_pred hhHHHHHhhhhcchhhhhhccccchhHHHHH
Q psy4877 34 VSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64 (120)
Q Consensus 34 ~~~r~~La~~~~l~~~~vqvWFqNrRak~rr 64 (120)
...-.++|..+|+++..|..+...-|.+.|+
T Consensus 151 g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 151 DLTHRELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSSCCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4456678999999999999888766666554
No 254
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=38.98 E-value=16 Score=20.48 Aligned_cols=19 Identities=11% Similarity=0.578 Sum_probs=17.3
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
|+|+.+|++...|.-|...
T Consensus 10 e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 10 TIARMTGIREATLRAWERR 28 (81)
T ss_dssp HHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHh
Confidence 6899999999999999875
No 255
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=38.80 E-value=14 Score=19.95 Aligned_cols=47 Identities=11% Similarity=0.299 Sum_probs=29.6
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHh--hhhcchhhhhhccccchhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELS--KLLNLTEVQIKTWFQNRRT 60 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La--~~~~l~~~~vqvWFqNrRa 60 (120)
|+|+.+|++...|..|..+- . |.... .. .........|.-|...++.
T Consensus 7 e~a~~LgvS~~Tl~rw~~~G--------~-P~~~~---~g~~~~~~y~~~dv~~wl~~~~~ 55 (68)
T 1j9i_A 7 QLADIFGASIRTIQNWQEQG--------M-PVLRG---GGKGNEVLYDSAAVIKWYAERDA 55 (68)
T ss_dssp HHHHHTTCCHHHHHHHTTTT--------C-CCSSC---CCSSSCCEEEHHHHHHHHTTTGG
T ss_pred HHHHHHCcCHHHHHHHHHCC--------C-CeEee---CCCcceEEECHHHHHHHHHHCcc
Confidence 68999999999999987662 1 22111 11 1344556667777766654
No 256
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=38.46 E-value=16 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.3
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
|+|++.+++..+|..|...++
T Consensus 54 e~arry~Is~s~i~~W~r~~~ 74 (95)
T 2jrt_A 54 EALDRYSLSEEEFALWRSAVA 74 (95)
T ss_dssp HHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 678899999999999988864
No 257
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=38.16 E-value=13 Score=21.86 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=14.1
Q ss_pred cchhccCCCHHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKTW 17 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~ 17 (120)
.||.++||++..|+..
T Consensus 23 ~LA~~Lg~~~~~I~~i 38 (91)
T 2ib1_A 23 ELAGHLGYQAEAVETM 38 (91)
T ss_dssp HHHHHHTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 5899999999999874
No 258
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=35.98 E-value=15 Score=19.36 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=16.3
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
++|+++|++...|..|..+.
T Consensus 18 ~~A~~lgis~~~vs~~~~~~ 37 (67)
T 2pij_A 18 ALAAALGVNQSAISQMVRAG 37 (67)
T ss_dssp HHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHcCC
Confidence 57889999998888888653
No 259
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=35.05 E-value=40 Score=20.61 Aligned_cols=45 Identities=13% Similarity=0.049 Sum_probs=31.5
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhc
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKT 53 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqv 53 (120)
+++|++..++-++.+-.+... .-+.+| .-.+||..++++...|..
T Consensus 26 ~~lgLt~~e~~vll~L~~~~~-~~~~~p---s~~~LA~~l~~s~~~V~~ 70 (128)
T 2vn2_A 26 KQLGLGEGELVLLLHMQSFFE-EGVLFP---TPAELAERMTVSAAECME 70 (128)
T ss_dssp TTTTCCHHHHHHHHHHHHHHT-TTCSSC---CHHHHHHTSSSCHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHh-cCCCCC---CHHHHHHHHCcCHHHHHH
Confidence 478999999999777765311 012333 457899999999988764
No 260
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=34.89 E-value=17 Score=20.88 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=18.0
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
++|..+|++...|..|...++
T Consensus 28 ~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 28 QIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHHHTSCHHHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHHHHh
Confidence 678999999999999987765
No 261
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=34.11 E-value=22 Score=20.82 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=15.8
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||.++||++.+|+....+
T Consensus 30 ~Lar~Lg~~~~~I~~I~~~ 48 (99)
T 1fad_A 30 RLARELKVSEAKMDGIEEK 48 (99)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5899999999999886544
No 262
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.95 E-value=22 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=18.9
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
++|+.+|++...|..|...++.
T Consensus 38 ~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 38 VISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHh
Confidence 5789999999999999987653
No 263
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=33.65 E-value=17 Score=19.60 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=15.9
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
.-|+++||+-++|...+...
T Consensus 20 ~~Ak~lGlsleEIrefL~l~ 39 (57)
T 1b0n_B 20 VEAKEANISPEEIRKYLLLN 39 (57)
T ss_dssp HHHHHTTCCHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHh
Confidence 45889999999998877653
No 264
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=33.15 E-value=21 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=17.1
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|+++..+...|...
T Consensus 23 ~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 23 KLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 68999999999998877764
No 265
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=32.96 E-value=25 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=15.2
Q ss_pred cchhccCCCHHHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKTWF 18 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~f 18 (120)
+||.++||++.+|+...
T Consensus 34 ~LAr~Lg~~~~~I~~ie 50 (110)
T 1wxp_A 34 ILAPYLEMKDSEIRQIE 50 (110)
T ss_dssp HHTTTTTCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH
Confidence 58999999999999866
No 266
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=32.84 E-value=23 Score=21.33 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=15.8
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||..+||++.+|+.....
T Consensus 34 ~LAr~Lg~s~~~I~~I~~~ 52 (111)
T 2yqf_A 34 ELARELQFSVEDINRIRVE 52 (111)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5899999999999886544
No 267
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=32.79 E-value=23 Score=27.59 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchh
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~ 35 (120)
||+.+|++..+.+....++. ..||...
T Consensus 386 La~~lgis~~eA~~~i~~~~------~~~p~v~ 412 (540)
T 4dfk_A 386 LSQELAIPYEEAQAFIERYF------QSFPKVR 412 (540)
T ss_dssp HHHHHTCCHHHHHHHHHHHH------HHSTHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH------HhChhHH
Confidence 78899999999988887776 5677664
No 268
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=32.54 E-value=21 Score=21.08 Aligned_cols=20 Identities=10% Similarity=0.361 Sum_probs=17.2
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|+++..+...|...
T Consensus 28 ~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 28 DIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999887764
No 269
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=32.44 E-value=21 Score=20.86 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.0
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|+++..+...|...
T Consensus 26 ~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 26 TLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 68999999999998877764
No 270
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=32.03 E-value=21 Score=20.61 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.7
Q ss_pred cchhccCCCHHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKTW 17 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~ 17 (120)
.||+++||+...|+.+
T Consensus 26 ~LA~~Lg~~~~~I~~~ 41 (85)
T 1ngr_A 26 HLAGELGYQPEHIDSF 41 (85)
T ss_dssp HHHHHTTCCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHH
Confidence 5899999999888764
No 271
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=31.68 E-value=24 Score=20.53 Aligned_cols=20 Identities=10% Similarity=0.348 Sum_probs=17.2
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|++...+...|...
T Consensus 25 ~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 25 SVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999888764
No 272
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=31.03 E-value=25 Score=20.95 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=16.6
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||+.+|+++..+...|..
T Consensus 28 ~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 28 RIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHH
Confidence 6899999999999988865
No 273
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=30.98 E-value=24 Score=21.75 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.0
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+++.++||+|.+|.....+
T Consensus 30 ~~aRkLGLse~~Id~Ie~~ 48 (112)
T 1ich_A 30 EFVKRLGLSDHEIDRLELQ 48 (112)
T ss_dssp HHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5789999999999886654
No 274
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=30.94 E-value=47 Score=19.27 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=11.1
Q ss_pred HHHHhhhhcchhhhhhcc
Q psy4877 37 RMELSKLLNLTEVQIKTW 54 (120)
Q Consensus 37 r~~La~~~~l~~~~vqvW 54 (120)
...+|..+|+++.+|.-|
T Consensus 27 Q~~vAe~~GvdeStISR~ 44 (83)
T 1zs4_A 27 TEKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred hHHHHHHhCCCHHHHhhh
Confidence 444566666666666654
No 275
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR {Homo sapiens} PDB: 2l4i_A 2lm5_A
Probab=30.83 E-value=29 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=18.9
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+|++.++|++.+|+.||..|..
T Consensus 38 ~l~~~t~~s~~ei~~l~~~F~~ 59 (214)
T 2l4h_A 38 EYQDLTFLTKQEILLAHRRFCE 59 (214)
T ss_dssp HHHSCCSCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHH
Confidence 5778899999999999988864
No 276
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.45 E-value=28 Score=21.28 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.9
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||.++||++.+|.....+
T Consensus 40 ~LAR~LGlse~dId~I~~~ 58 (114)
T 2of5_A 40 PMVLSLGLSQTDIYRCKAN 58 (114)
T ss_dssp HHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5899999999999886554
No 277
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=30.38 E-value=1.5 Score=27.12 Aligned_cols=45 Identities=7% Similarity=0.035 Sum_probs=31.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
|||+++|++...|..|+.+.+.... ...|+...-..||..++++.
T Consensus 10 eLA~~~Gvs~~~is~~E~G~~~~~~--~~~p~~~~l~~la~~l~v~~ 54 (122)
T 1nr3_A 10 KIARELKTTRQNVSAIERKAMENIE--KSRNTLDFVKSLKSPVRILC 54 (122)
T ss_dssp STHHHHHHCCSSSCCHHHHHHTTCS--SSSCHHHHHHHHCCCEEEEE
T ss_pred HHHHHhCCCHHHHHHHHcCCCccch--hcccCHHHHHHHHHHHcccc
Confidence 7999999999999999998542111 23466666777777776655
No 278
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=30.34 E-value=49 Score=22.50 Aligned_cols=47 Identities=11% Similarity=0.019 Sum_probs=32.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTE 48 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~ 48 (120)
|||+.+|++..||..=|..+=.-=++---|-.....+++...+|+..
T Consensus 37 ela~~~gv~~~qiRkDls~fg~~G~~g~GY~V~~L~~~i~~~Lg~~~ 83 (212)
T 3keo_A 37 QIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHS 83 (212)
T ss_dssp HHHHHHTSCHHHHHHHHHTTGGGTTTSSSEEHHHHHHHHHHHTTTTS
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCCCCCCEEHHHHHHHHHHHhCCCC
Confidence 78999999999998855444322222345666777777788777665
No 279
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=30.30 E-value=25 Score=27.76 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=30.1
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchhHHH----HHhhhhcchhhhhhccccchh
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRM----ELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~----~La~~~~l~~~~vqvWFqNrR 59 (120)
||+.+|++..+-+....++. ..||....=. +.|.+.|. |..+|..||
T Consensus 437 La~~l~i~~~eA~~~i~~~~------~~~p~v~~~~~~~~~~a~~~Gy----v~Tl~GRrr 487 (592)
T 3pv8_A 437 LAQNLNISRKEAAEFIERYF------ESFPGVKRYMENIVQEAKQKGY----VTTLLHRRR 487 (592)
T ss_dssp HHHHHTCCHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHHHHSE----EECTTCCEE
T ss_pred HHHHcCCCHHHHHHHHHHHH------HHChhHHHHHHHHHHHHHHcCC----EECCCCCee
Confidence 78899999999988877776 5677654222 23455553 445554443
No 280
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=29.60 E-value=28 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.8
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||.++||++.+|.....+
T Consensus 40 ~LAR~LGlse~dId~I~~~ 58 (115)
T 2o71_A 40 PMVLSLGLSQTDIYRCKAN 58 (115)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5899999999999886554
No 281
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=29.49 E-value=28 Score=21.25 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=15.8
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||..+||++.+|+....+
T Consensus 29 ~LAr~Lg~s~~~I~~I~~~ 47 (118)
T 2of5_H 29 AVALHLGVSYREVQRIRHE 47 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5899999999999886554
No 282
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=29.38 E-value=30 Score=20.16 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.4
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
++|.++||++..|.....+
T Consensus 17 ~~~R~LGlse~~Id~I~~~ 35 (86)
T 3oq9_A 17 KFARENNIKEGKIDEIMHD 35 (86)
T ss_dssp HHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHcCCCHhHHHHHHHh
Confidence 5788999999999875554
No 283
>1lre_A Receptor-associated protein; low density lipoprotein receptor family associated protein, LDLR family associated protein, helix bundle; NMR {Homo sapiens} SCOP: a.13.1.1 PDB: 1nre_A 2fyl_A 1op1_A
Probab=29.30 E-value=68 Score=18.47 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=20.5
Q ss_pred hhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHh
Q psy4877 4 SKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELS 41 (120)
Q Consensus 4 a~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La 41 (120)
|.+..|++..++.+|..-. ++++++||
T Consensus 16 A~~~~L~~~KLk~l~~dLK-----------i~dKeEla 42 (81)
T 1lre_A 16 AQRLHLPPVRLAELHADLK-----------IQERDELA 42 (81)
T ss_dssp HHHTTCCHHHHHHHHHHHH-----------HHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHH-----------hhhHHHHH
Confidence 4444788999999888866 67888876
No 284
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.14 E-value=19 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=11.6
Q ss_pred cchhccCCCHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKT 16 (120)
Q Consensus 2 ~la~~~~~~~~~~q~ 16 (120)
|||+++|++...|+-
T Consensus 36 eLA~~Lgvs~~tV~~ 50 (77)
T 1qgp_A 36 DLSGKLGTPKKEINR 50 (77)
T ss_dssp HHHHHHCCCHHHHHH
T ss_pred HHHHHHCcCHHHHHH
Confidence 688888888877744
No 285
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=29.14 E-value=43 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.400 Sum_probs=11.4
Q ss_pred HHHHHhhhhcchhhhhhcc
Q psy4877 36 KRMELSKLLNLTEVQIKTW 54 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvW 54 (120)
-...+|..+|+++++|..|
T Consensus 25 gq~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 25 GTEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp CHHHHHHHHTCCTTTHHHH
T ss_pred hHHHHHHHhCCCHHHHHHH
Confidence 3445666666666666655
No 286
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=29.12 E-value=27 Score=21.14 Aligned_cols=20 Identities=10% Similarity=0.278 Sum_probs=17.5
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
+||+.+|+++..+...|...
T Consensus 32 ~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 32 KVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999988764
No 287
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=29.00 E-value=30 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.9
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchh
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~ 35 (120)
||+.+|++..+.+....+++ ..||...
T Consensus 678 La~~lgis~~eA~~~i~~~~------~~~p~v~ 704 (832)
T 1bgx_T 678 LSQELAIPYEEAQAFIERYF------QSFPKVR 704 (832)
T ss_dssp HHHHSSCCHHHHHHHHHHHH------HHCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH------HHCccHH
Confidence 78999999999998888877 5666664
No 288
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.95 E-value=29 Score=21.41 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=19.1
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
++|+.+|++...|..|...++.
T Consensus 53 ~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 53 DISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHH
Confidence 5799999999999999987653
No 289
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.78 E-value=30 Score=20.18 Aligned_cols=21 Identities=10% Similarity=0.417 Sum_probs=15.0
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
++|.++|++...|..|...++
T Consensus 35 ~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 35 SIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHH
Confidence 467777888777777766654
No 290
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=28.75 E-value=29 Score=21.47 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=15.9
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
+||.++||++.+|+....+
T Consensus 22 ~LAR~LGlse~dId~Ie~~ 40 (122)
T 3ezq_B 22 RLARQLKVSDTKIDSIEDR 40 (122)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 5899999999999886544
No 291
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=28.29 E-value=21 Score=22.40 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.1
Q ss_pred hHHHHHhhhhcchhhhhhccccchh
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
.....+|..+|++..++..|.-..|
T Consensus 70 ~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 70 EFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHHhCCCcccEEEEEeecC
Confidence 3467789999999999999987665
No 292
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=28.14 E-value=70 Score=19.86 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=18.4
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+|++.++|++.+|+.+|..+..
T Consensus 15 ~l~~~~~~~~~~i~~~f~~fd~ 36 (190)
T 1g8i_A 15 ELTRKTYFTEKEVQQWYKGFIK 36 (190)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHH
Confidence 3667889999999999998864
No 293
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=28.05 E-value=25 Score=20.86 Aligned_cols=27 Identities=15% Similarity=-0.073 Sum_probs=22.5
Q ss_pred hHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
..++.|+.+.|++..+++.+|..+--+
T Consensus 46 ~LK~~I~~k~Gip~~qQrLif~Gk~Lk 72 (93)
T 3plu_A 46 DFKKVLSLQIGTQPNKIVLQKGGSVLK 72 (93)
T ss_dssp HHHHHHHHHHTCCGGGEEEEETTEECC
T ss_pred HHHHHHHHHhCCCHHHEEEEeCCEEcc
Confidence 567788999999999999999876544
No 294
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=27.27 E-value=32 Score=20.69 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.4
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
++|+.+|++...|..|..++..
T Consensus 30 ~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 30 EIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp HHHHHHTCCHHHHHHHHHTHHH
T ss_pred HHHHHhCCCHHHHHHHHhchhh
Confidence 6899999999999999888654
No 295
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=25.88 E-value=24 Score=20.19 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=11.2
Q ss_pred cchhccCCCHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKT 16 (120)
Q Consensus 2 ~la~~~~~~~~~~q~ 16 (120)
|||+++|++...|+.
T Consensus 32 eLA~~Lgvsr~tV~~ 46 (81)
T 1qbj_A 32 DLSGKLGTPKKEINR 46 (81)
T ss_dssp HHHHHHTCCHHHHHH
T ss_pred HHHHHHCcCHHHHHH
Confidence 678888888877744
No 296
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=25.21 E-value=33 Score=20.62 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=18.1
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
++|+.+|++...|..|+..+.
T Consensus 27 ~ia~~lgis~~Tv~r~~~~~~ 47 (141)
T 1u78_A 27 EMSRKISRSRHCIRVYLKDPV 47 (141)
T ss_dssp HHHHHHTCCHHHHHHHHHSGG
T ss_pred HHHHHHCcCHHHHHHHHHccc
Confidence 578999999999999988764
No 297
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=25.17 E-value=54 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=20.9
Q ss_pred hHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 35 SKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 35 ~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
...++||..++++++.|.+-..|=+.|
T Consensus 165 ~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 165 LTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 356789999999999998877655544
No 298
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=24.54 E-value=48 Score=20.02 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=27.2
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccch-hHHHHHhhhhcchhhhhh
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSV-SKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~-~~r~~La~~~~l~~~~vq 52 (120)
|+..+||++.+..++.--.. .+.. ..-.+||..++++...|.
T Consensus 18 l~~~~gLt~~e~~il~~L~~--------~~~~~~t~~eLa~~l~~s~sTV~ 60 (123)
T 3r0a_A 18 IKCALNLTKADLNVMKSFLN--------EPDRWIDTDALSKSLKLDVSTVQ 60 (123)
T ss_dssp HHHHHTCCHHHHHHHHHHHH--------STTCCEEHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHH--------CCCCCcCHHHHHHHHCcCHHHHH
Confidence 34457999988888554422 1222 456778999998776554
No 299
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=24.39 E-value=71 Score=19.77 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=27.0
Q ss_pred hccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhh
Q psy4877 5 KLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 5 ~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vq 52 (120)
+.+|+|..|..+++--.+ .+......+||..++++...|.
T Consensus 25 ~~~gLt~~q~~vL~~L~~--------~~~~~~~~eLa~~l~~~~~tvs 64 (151)
T 4aik_A 25 KPLELTQTHWVTLYNINR--------LPPEQSQIQLAKAIGIEQPSLV 64 (151)
T ss_dssp GGGCCCHHHHHHHHHHHH--------SCTTSCHHHHHHHHTSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH--------cCCCCcHHHHHHHHCcCHHHHH
Confidence 356899998888665532 2333445688999998886554
No 300
>1tuz_A Diacylglycerol kinase alpha; transferase, HR532, nesgc, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=24.39 E-value=6.8 Score=24.36 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=17.9
Q ss_pred cchhccCCCHHHHHHHHhhhH
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRR 22 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r 22 (120)
+|.+.|.|++.+|+.|+..+.
T Consensus 15 ~L~~~t~fs~~elk~~y~~F~ 35 (118)
T 1tuz_A 15 QLQKYMEYSTKKVSDVLKLFE 35 (118)
T ss_dssp HHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHc
Confidence 567788899999999999983
No 301
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=24.36 E-value=16 Score=24.09 Aligned_cols=31 Identities=16% Similarity=0.243 Sum_probs=0.0
Q ss_pred ccchhHHHHHhhhhcchhhhhhccccchhHH
Q psy4877 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61 (120)
Q Consensus 31 yp~~~~r~~La~~~~l~~~~vqvWFqNrRak 61 (120)
|.....-.++|..+|++...|..+...-+.+
T Consensus 211 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 211 YYKDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -------------------------------
T ss_pred HhcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5556677889999999999998887644433
No 302
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=24.14 E-value=45 Score=14.99 Aligned_cols=12 Identities=33% Similarity=0.961 Sum_probs=7.8
Q ss_pred cchhHHHHHHHH
Q psy4877 56 QNRRTKWKKQLA 67 (120)
Q Consensus 56 qNrRak~rr~~~ 67 (120)
.|||-+|+....
T Consensus 7 RnRRRRWR~Rq~ 18 (26)
T 1etf_B 7 RNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 377777776443
No 303
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=24.00 E-value=88 Score=19.37 Aligned_cols=22 Identities=14% Similarity=0.241 Sum_probs=18.3
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+|+..+++++.+|+.+|..+..
T Consensus 15 ~l~~~~~~~~~~i~~~~~~fd~ 36 (190)
T 1fpw_A 15 CLKQSTYFDRREIQQWHKGFLR 36 (190)
T ss_dssp HHTTTCCSTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHH
Confidence 3566789999999999999864
No 304
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=23.48 E-value=27 Score=23.10 Aligned_cols=20 Identities=5% Similarity=0.142 Sum_probs=13.1
Q ss_pred cchhccCCCHHHHHHHHhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNR 21 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~ 21 (120)
|||+.+|++...+..|+...
T Consensus 108 elA~~LGvsr~tis~yE~G~ 127 (170)
T 2auw_A 108 TAAEALGISRRMVSYYRTAH 127 (170)
T ss_dssp HHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHhCCCHHHHHHHHcCC
Confidence 46666677666666666664
No 305
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=23.23 E-value=23 Score=27.82 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=20.9
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVS 35 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~ 35 (120)
-||+.+|+++.+.+....+++ ..||...
T Consensus 449 ~la~~l~i~~~ea~~~i~~~~------~~~p~v~ 476 (605)
T 2kfn_A 449 GLARQLNIPRKEAQKYMDLYF------ERYPGVL 476 (605)
T ss_dssp HHHHHHTCCTTTHHHHHHHHH------HHCHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHH------HHCccHH
Confidence 378889999988888777776 4566654
No 306
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.22 E-value=44 Score=19.28 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=12.5
Q ss_pred cchhccCCCHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKT 16 (120)
Q Consensus 2 ~la~~~~~~~~~~q~ 16 (120)
|||+++|++..-|.-
T Consensus 35 eLAk~LgiSk~aVr~ 49 (82)
T 1oyi_A 35 QLTRQLNMEKREVNK 49 (82)
T ss_dssp HHHHHSSSCHHHHHH
T ss_pred HHHHHHCcCHHHHHH
Confidence 789999999987744
No 307
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=22.98 E-value=95 Score=19.11 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=18.4
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+|...++|++.+|+.+|..+..
T Consensus 8 ~l~~~~~~s~~~i~~l~~~fd~ 29 (183)
T 1s6c_A 8 QLEAQTNFTKRELQVLYRGFKN 29 (183)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHH
Confidence 3567789999999999998874
No 308
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=22.64 E-value=30 Score=19.74 Aligned_cols=45 Identities=7% Similarity=-0.167 Sum_probs=27.5
Q ss_pred chhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhh
Q psy4877 3 LSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIK 52 (120)
Q Consensus 3 la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vq 52 (120)
-|++++++..++.++.--... ..-.......+||..++++...|.
T Consensus 4 ~~~k~~l~~~~~~iL~~l~~~-----~~~~~~~t~~eLa~~l~i~~~tvs 48 (95)
T 2qvo_A 4 ERIKLLFKEKALEILMTIYYE-----SLGGNDVYIQYIASKVNSPHSYVW 48 (95)
T ss_dssp -CHHHHSCHHHHHHHHHHHHH-----HHTTCCEEHHHHHHHSSSCHHHHH
T ss_pred HHHHcCCchhHHHHHHHHHHc-----cCCCCCcCHHHHHHHHCcCHHHHH
Confidence 477889999988886544221 000001345788998988876554
No 309
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=22.26 E-value=14 Score=20.01 Aligned_cols=47 Identities=2% Similarity=-0.160 Sum_probs=28.2
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhhcccccchhHHHHHhhhhcchhhhhhccccchh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~~~~yp~~~~r~~La~~~~l~~~~vqvWFqNrR 59 (120)
|+|+.+|++...|-.|-.. ..+|... .|.......+..|.-|..++.
T Consensus 15 eva~~lgvsrstiy~~~~~--------g~fP~pi---klG~~~~w~~~ev~~Wl~~~~ 61 (66)
T 1z4h_A 15 FIMADTGFGKTFIYDRIKS--------GDLPKAK---VIHGRARWLYRDHCEFKNKLL 61 (66)
T ss_dssp HHHHHHSSCHHHHHHHHHH--------HHCCCSE---ESSSCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHC--------CCCCCCE---EeCCCeEEeHHHHHHHHHHHH
Confidence 5788889988888776655 3455421 223333455667777775443
No 310
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=21.93 E-value=80 Score=21.16 Aligned_cols=41 Identities=5% Similarity=0.027 Sum_probs=28.7
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh----------cccccchhHHHHHhhhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY----------VDKYLSVSKRMELSKLL 44 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~----------~~~yp~~~~r~~La~~~ 44 (120)
|||+++|++...|.-|.+.-+ |-. .-.+|+...-..++..+
T Consensus 29 eIA~~lGiSr~~VSR~L~~A~--~~~~lv~lfp~~~~ls~p~~~~L~k~~~~l 79 (192)
T 1zx4_A 29 DIAAKEGLSQAKVTRALQAAS--APEELVALFPVQSELTFSDYKTLCAVGDEM 79 (192)
T ss_dssp HHHHHHTCCHHHHHHHHHHHT--SCHHHHTTCSCGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHhCcCHHHHHHHHHHhc--cchhhHHHcCCcccCccchHHHHHHHHHHh
Confidence 789999999999998876633 111 23466666666677766
No 311
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=21.32 E-value=29 Score=18.96 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHhhhhcchhhhhhcccc
Q psy4877 36 KRMELSKLLNLTEVQIKTWFQ 56 (120)
Q Consensus 36 ~r~~La~~~~l~~~~vqvWFq 56 (120)
...++|+.+|++..-|.-|-.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 567789999999999988863
No 312
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal specific guanylate cyclase activator; 2.40A {Bos taurus} SCOP: a.39.1.5
Probab=21.31 E-value=49 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=18.6
Q ss_pred cchhccCCCHHHHHHHHhhhHh
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRT 23 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~ 23 (120)
+|+..++|++.+|+.+|..+-.
T Consensus 15 ~l~~~~~~~~~~i~~~f~~fd~ 36 (193)
T 1bjf_A 15 DLLESTDFTEHEIQEWYKGFLR 36 (193)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHH
Confidence 4677889999999999998864
No 313
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.26 E-value=31 Score=22.01 Aligned_cols=15 Identities=0% Similarity=-0.004 Sum_probs=10.5
Q ss_pred cchhccCCCHHHHHH
Q psy4877 2 ELSKLLNLTEVQIKT 16 (120)
Q Consensus 2 ~la~~~~~~~~~~q~ 16 (120)
|||+++|++.+.|+.
T Consensus 100 eLA~~~gid~~~L~~ 114 (160)
T 2lfc_A 100 SAAEQAGIVVDELVQ 114 (160)
T ss_dssp HHHHHHTCCHHHHHH
T ss_pred HHHHHhCCCHHHHHH
Confidence 577777777766643
No 314
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=21.17 E-value=46 Score=19.67 Aligned_cols=56 Identities=5% Similarity=-0.038 Sum_probs=34.0
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh--ccc--ccchhHHHH-----Hhhhhcchhhhhhccccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY--VDK--YLSVSKRME-----LSKLLNLTEVQIKTWFQN 57 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~--~~~--yp~~~~r~~-----La~~~~l~~~~vqvWFqN 57 (120)
|+|+.+|++...|.-|...-..+-.+ .+- +-+...... ....+|++-..|+.++.+
T Consensus 6 e~A~~~gvs~~tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 6 QVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp HHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 68999999999999997763322111 111 112222222 136678888888877754
No 315
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.98 E-value=49 Score=17.75 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=14.1
Q ss_pred cchhccCCCHHHHHHHHhh
Q psy4877 2 ELSKLLNLTEVQIKTWFQN 20 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~ 20 (120)
|||+.+|++...|......
T Consensus 30 eLA~~lglsr~tv~~~l~~ 48 (67)
T 2heo_A 30 QLVKKCQVPKKTLNQVLYR 48 (67)
T ss_dssp HHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHH
Confidence 6889999998777554444
No 316
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=20.34 E-value=47 Score=19.64 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=32.4
Q ss_pred cchhccCCCHHHHHHHHhhhHhhhhh--cc--cccchhHHHH-----Hhhhhcchhhhhhccccc
Q psy4877 2 ELSKLLNLTEVQIKTWFQNRRTKWKY--VD--KYLSVSKRME-----LSKLLNLTEVQIKTWFQN 57 (120)
Q Consensus 2 ~la~~~~~~~~~~q~~fq~~r~k~~~--~~--~yp~~~~r~~-----La~~~~l~~~~vqvWFqN 57 (120)
|+|+.+|++...|.-|...-..+-.+ .+ +|-+...... ....+|++-..|+..+.+
T Consensus 7 e~A~~~gvs~~tLR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 7 QVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp HHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHC
T ss_pred HHHHHHCcCHHHHHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCCCCHHHHHHHHhC
Confidence 68999999999999997753221111 11 1222222222 135668888777766643
Done!