RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4877
(120 letters)
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 71.6 bits (176), Expect = 3e-18
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
KYL+ ++R L+K L +T+ Q+KTWFQNRRTKW++Q
Sbjct: 20 KYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55
Score = 53.9 bits (130), Expect = 2e-11
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+K L +T+ Q+KTWFQNRRTKW+
Sbjct: 28 AALAKALRMTDAQVKTWFQNRRTKWR 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 71.0 bits (174), Expect = 1e-17
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAH 75
KYL+ ++R L++ L +T+ Q+KTWFQNRRTKW++Q A + +
Sbjct: 40 KYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQ 85
Score = 53.3 bits (128), Expect = 1e-10
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLN 45
L++ L +T+ Q+KTWFQNRRTKW+ ++R ++L+
Sbjct: 48 AALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLML 92
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein,
transcription regulation, NUC homeobox; 2.6A {Mus
musculus}
Length = 62
Score = 70.0 bits (172), Expect = 1e-17
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
KYLS+ + ELS +LNL+ Q+KTWFQN+R K K+
Sbjct: 26 KYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61
Score = 53.8 bits (130), Expect = 2e-11
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
ELS +LNL+ Q+KTWFQN+R K K
Sbjct: 34 QELSSILNLSYKQVKTWFQNQRMKCK 59
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 69
Score = 70.1 bits (172), Expect = 1e-17
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
KYLS +R L+K L LTE Q+K WFQNRR K K++ S
Sbjct: 27 KYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSS 66
Score = 53.1 bits (128), Expect = 6e-11
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+K L LTE Q+K WFQNRR K K
Sbjct: 35 AHLAKNLKLTETQVKIWFQNRRYKTK 60
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 70.6 bits (173), Expect = 1e-17
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
KYLS R++L++ L L+++Q+KTW+QNRR KWKK S
Sbjct: 40 KYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79
Score = 54.0 bits (130), Expect = 4e-11
Identities = 14/26 (53%), Positives = 23/26 (88%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
++L++ L L+++Q+KTW+QNRR KWK
Sbjct: 48 IDLAESLGLSQLQVKTWYQNRRMKWK 73
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 69.2 bits (170), Expect = 2e-17
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+YLS+++R E S L+LTE Q+K WFQNRR K K+
Sbjct: 23 QYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 54.2 bits (131), Expect = 2e-11
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
E S L+LTE Q+K WFQNRR K K
Sbjct: 31 AEFSSSLSLTETQVKIWFQNRRAKAK 56
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 68.6 bits (168), Expect = 5e-17
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
+YL++ +R EL+ L LT+ Q+K WFQN+R+K KK S
Sbjct: 30 QYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69
Score = 52.4 bits (126), Expect = 1e-10
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+ L LT+ Q+K WFQN+R+K K
Sbjct: 38 AELAASLGLTQTQVKIWFQNKRSKIK 63
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 68.6 bits (168), Expect = 6e-17
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
+YLS +R L+ L+ LT Q+K WFQN R K K+ K
Sbjct: 32 RYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71
Score = 52.1 bits (125), Expect = 2e-10
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+ LT Q+K WFQN R K K
Sbjct: 40 EHLASLIRLTPTQVKIWFQNHRYKTK 65
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 68.5 bits (168), Expect = 6e-17
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
KYLS +R L+ +++LT Q+K WFQN R K K+Q K
Sbjct: 25 KYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64
Score = 51.6 bits (124), Expect = 2e-10
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+ +++LT Q+K WFQN R K K
Sbjct: 33 EHLASMIHLTPTQVKIWFQNHRYKMK 58
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 68.2 bits (167), Expect = 7e-17
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
KYLS +R L+K+L L+E Q+KTWFQNRR KW++ S
Sbjct: 30 KYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69
Score = 52.8 bits (127), Expect = 8e-11
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+K+L L+E Q+KTWFQNRR KW+
Sbjct: 38 KRLAKMLQLSERQVKTWFQNRRAKWR 63
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for
eukaryotic structural genomics; NMR {Homo sapiens}
Length = 84
Score = 68.3 bits (167), Expect = 1e-16
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
KYLS+ + ELS +LNL+ Q+KTWFQN+R K K+
Sbjct: 45 KYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80
Score = 52.9 bits (127), Expect = 1e-10
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
ELS +LNL+ Q+KTWFQN+R K K
Sbjct: 53 QELSNILNLSYKQVKTWFQNQRMKSK 78
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 67.3 bits (165), Expect = 1e-16
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
+YLS +R +L+ +L LT Q+K WFQNRR K K
Sbjct: 25 RYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
Score = 53.8 bits (130), Expect = 2e-11
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+L+ +L LT Q+K WFQNRR K K
Sbjct: 33 DQLASVLKLTSTQVKIWFQNRRYKSK 58
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 61.1 bits (149), Expect = 4e-14
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
+ L+ ++ E++K +T +Q++ WF N+R + K
Sbjct: 27 KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
Score = 52.2 bits (126), Expect = 1e-10
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
E++K +T +Q++ WF N+R + K
Sbjct: 36 EEVAKKCGITPLQVRVWFINKRMRSK 61
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double
helix, helix-turn-helix; NMR {Drosophila melanogaster}
SCOP: a.4.1.1
Length = 68
Score = 61.3 bits (149), Expect = 4e-14
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
+YL+ + +LS L L Q+K WF+NRR + K Q
Sbjct: 25 RYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64
Score = 48.6 bits (116), Expect = 3e-09
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+LS L L Q+K WF+NRR + K
Sbjct: 33 ADLSAKLALGTAQVKIWFKNRRRRHK 58
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 60.4 bits (147), Expect = 6e-14
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ Y+S +R EL+ LNL E IK WFQNRR K K+Q
Sbjct: 23 ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59
Score = 48.5 bits (116), Expect = 3e-09
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+ LNL E IK WFQNRR K K
Sbjct: 32 CELAAQLNLPESTIKVWFQNRRMKDK 57
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 60.4 bits (147), Expect = 8e-14
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+YL+ +R +LS L L E QIK WF+N+R K KK
Sbjct: 26 RYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
Score = 48.5 bits (116), Expect = 3e-09
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+LS L L E QIK WF+N+R K K
Sbjct: 35 QLSSELGLNEAQIKIWFKNKRAKIK 59
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain;
protein-DNA complex, transcription/DNA complex; 2.42A
{Mesocricetus auratus}
Length = 63
Score = 60.1 bits (146), Expect = 1e-13
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+KY+S +R+EL+ +LNLTE IK WFQNRR KWKK+
Sbjct: 25 NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61
Score = 48.9 bits (117), Expect = 3e-09
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+EL+ +LNLTE IK WFQNRR KWK
Sbjct: 34 VELAVMLNLTERHIKIWFQNRRMKWK 59
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA;
NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 60.1 bits (146), Expect = 1e-13
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++YL+ +R+E++ L+LTE QIK WFQNRR KWKK+
Sbjct: 24 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60
Score = 49.3 bits (118), Expect = 2e-09
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L+LTE QIK WFQNRR KWK
Sbjct: 33 IEIAHALSLTERQIKIWFQNRRMKWK 58
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA
complex, HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 59.1 bits (143), Expect = 4e-13
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
YL+ +R E+++LLNLTE Q+K WFQNRR K KK + K
Sbjct: 36 MYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
Score = 47.5 bits (113), Expect = 1e-08
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
E+++LLNLTE Q+K WFQNRR K K
Sbjct: 44 YEVARLLNLTERQVKIWFQNRRMKMK 69
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 58.7 bits (142), Expect = 5e-13
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
K+++ KR ++S +L+E QI WFQNRR K KK S
Sbjct: 30 KFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69
Score = 47.5 bits (113), Expect = 8e-09
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
++S +L+E QI WFQNRR K K
Sbjct: 38 RKISAATSLSERQITIWFQNRRVKEK 63
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 58.7 bits (142), Expect = 5e-13
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
YL+ +R+E++ L+LTE QIK WFQNRR K KK+
Sbjct: 43 HYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78
Score = 48.7 bits (116), Expect = 5e-09
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L+LTE QIK WFQNRR K K
Sbjct: 51 IEMAHALSLTERQIKIWFQNRRMKLK 76
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 59.1 bits (143), Expect = 6e-13
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
KYLS ++R+E++ L L E Q+K WFQNRR K KK+
Sbjct: 57 KYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKREREG 96
Score = 47.2 bits (112), Expect = 2e-08
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L L E Q+K WFQNRR K K
Sbjct: 65 VEIAATLELNETQVKIWFQNRRMKQK 90
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens}
PDB: 2ld5_A*
Length = 73
Score = 57.9 bits (140), Expect = 9e-13
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
K+++ KR +S NL+E Q+ WFQNRR K KK
Sbjct: 30 KFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65
Score = 47.2 bits (112), Expect = 1e-08
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+S NL+E Q+ WFQNRR K K
Sbjct: 38 RRISATTNLSERQVTIWFQNRRVKEK 63
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 57.9 bits (140), Expect = 1e-12
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YL+ +R+E++ L+LTE QIK WFQNRR KWKK+
Sbjct: 51 RYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86
Score = 47.5 bits (113), Expect = 1e-08
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L+LTE QIK WFQNRR KWK
Sbjct: 59 IEIAHALSLTERQIKIWFQNRRMKWK 84
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 54.3 bits (131), Expect = 3e-11
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
+++ S+ L+K+ L+ +++ WF +RR + S+
Sbjct: 30 NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70
Score = 44.7 bits (106), Expect = 1e-07
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+K+ L+ +++ WF +RR +
Sbjct: 39 EHLTKVTGLSTREVRKWFSDRRYHCR 64
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 53.2 bits (128), Expect = 5e-11
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
V+K+ + ++ LTE Q + WF+ R +W++
Sbjct: 24 VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
Score = 41.3 bits (97), Expect = 2e-06
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
++ LTE Q + WF+ R +W+
Sbjct: 34 CLIAAEAGLTEEQTQKWFKQRLAEWR 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 53.8 bits (129), Expect = 2e-10
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+ +++ LN+ + I+ WF NRR K K+
Sbjct: 125 KPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158
Score = 46.5 bits (110), Expect = 1e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+++ LN+ + I+ WF NRR K K
Sbjct: 133 LIAEQLNMEKEVIRVWFSNRRQKEK 157
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 53.9 bits (129), Expect = 2e-10
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
S + L+ L L + ++ WF NRR K K+
Sbjct: 121 CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRM 157
Score = 45.0 bits (106), Expect = 5e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
L+ L L + ++ WF NRR K K +
Sbjct: 131 GLADSLQLEKEVVRVWFCNRRQKEKRMTP 159
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 51.2 bits (123), Expect = 3e-10
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y + +LS LLNL I WFQN R K +K
Sbjct: 30 AYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65
Score = 43.5 bits (103), Expect = 4e-07
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+LS LLNL I WFQN R K +
Sbjct: 39 QLSNLLNLPTRVIVVWFQNARQKAR 63
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 50.1 bits (120), Expect = 1e-09
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
V+K+ + ++ LTE Q + WF+ R +W++
Sbjct: 23 VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Score = 39.7 bits (93), Expect = 1e-05
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKW 25
++ LTE Q + WF+ R +W
Sbjct: 33 CLIAAEAGLTEEQTQKWFKQRLAEW 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 51.6 bits (123), Expect = 1e-09
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+ + E++K LN ++ WF NRR K
Sbjct: 117 LPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
Score = 45.0 bits (106), Expect = 4e-07
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E++K LN ++ WF NRR K
Sbjct: 125 EMAKELNYDREVVRVWFSNRRQTLK 149
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 49.2 bits (117), Expect = 9e-09
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 16 TWFQNRRTKWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+ + + S + M +++ LNL + ++ WF NRR + K+
Sbjct: 95 SIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144
Score = 42.3 bits (99), Expect = 4e-06
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+++ LNL + ++ WF NRR + K
Sbjct: 119 RMAEELNLEKEVVRVWFCNRRQREK 143
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 80
Score = 47.9 bits (114), Expect = 1e-08
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+D + ++ + L + ++ WFQN R + +K
Sbjct: 38 LDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75
Score = 40.2 bits (94), Expect = 8e-06
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
++ + L + ++ WFQN R + +
Sbjct: 49 HIAHEVGLKKRVVQVWFQNTRARER 73
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 46.5 bits (111), Expect = 2e-08
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y + +L++ LNL +I+ WFQNRR K K+
Sbjct: 25 YPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59
Score = 40.0 bits (94), Expect = 6e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L++ LNL +I+ WFQNRR K K
Sbjct: 33 DLAQKLNLELDRIQIWFQNRRAKLK 57
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 46.1 bits (110), Expect = 3e-08
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y V R EL+ + LTE +I+ WFQNRR KW+KQ
Sbjct: 23 YPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57
Score = 39.5 bits (93), Expect = 9e-06
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+ + LTE +I+ WFQNRR KW+
Sbjct: 31 ELAMKIGLTEARIQVWFQNRRAKWR 55
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 46.1 bits (110), Expect = 3e-08
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y +S R E++ NLTE +++ WF+NRR KW+K+
Sbjct: 27 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61
Score = 39.6 bits (93), Expect = 9e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYL 32
E++ NLTE +++ WF+NRR KW+ ++++
Sbjct: 35 EIAVWTNLTEARVRVWFKNRRAKWRKREEFI 65
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 45.6 bits (108), Expect = 4e-08
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++ ++ L ++ L +IK WF + R + ++
Sbjct: 26 SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62
Score = 39.8 bits (93), Expect = 9e-06
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L ++ L +IK WF + R + +
Sbjct: 36 RLIEVTGLARSEIKKWFSDHRYRCQ 60
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 47.9 bits (113), Expect = 5e-08
Identities = 8/60 (13%), Positives = 19/60 (31%)
Query: 10 TEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
+ + +K S ++ +S+ L L + +F N R + +
Sbjct: 100 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEH 159
Score = 38.7 bits (89), Expect = 9e-05
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+S+ L L + +F N R +
Sbjct: 129 TISQQLGLELSTVSNFFMNARRRSL 153
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 45.8 bits (109), Expect = 5e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y + R EL++ NLTE +I+ WFQNRR + +KQ
Sbjct: 42 YPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76
Score = 39.7 bits (93), Expect = 1e-05
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLS 33
EL++ NLTE +I+ WFQNRR + + +S
Sbjct: 50 ELAQRTNLTEARIQVWFQNRRARLRKQHTSVS 81
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 45.2 bits (107), Expect = 7e-08
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
V Y LS L+L + I +FQN+R K
Sbjct: 29 VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
LS L+L + I +FQN+R K
Sbjct: 39 HTLSAQLDLPKHTIIKFFQNQRYHVK 64
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 45.0 bits (107), Expect = 8e-08
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y V R +L++ ++L E +++ WF+NRR KW++
Sbjct: 31 YPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65
Score = 38.5 bits (90), Expect = 3e-05
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L++ ++L E +++ WF+NRR KW+
Sbjct: 39 QLARKVHLREEKVEVWFKNRRAKWR 63
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 44.6 bits (106), Expect = 1e-07
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++ S + E++ L + IK WF+N K ++
Sbjct: 28 INNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65
Score = 37.7 bits (88), Expect = 5e-05
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E++ L + IK WF+N K +
Sbjct: 39 EMADKSGLPQKVIKHWFRNTLFKER 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 46.3 bits (109), Expect = 1e-07
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
S+ + ++ L L + ++ WF NRR K K+
Sbjct: 118 SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153
Score = 40.1 bits (93), Expect = 2e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
++ L L + ++ WF NRR K K
Sbjct: 128 HIANQLGLEKDVVRVWFSNRRQKGK 152
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 44.7 bits (106), Expect = 2e-07
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y V R L+ ++L E +I+ WF NRR KW+++
Sbjct: 31 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65
Score = 38.5 bits (90), Expect = 3e-05
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDKYLSVSKR 37
L+ ++L E +I+ WF NRR KW+ +K + ++
Sbjct: 39 RLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQ 74
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Mus musculus}
Length = 80
Score = 44.3 bits (105), Expect = 2e-07
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y + R E++ +NL E +++ WF+NRR K ++Q
Sbjct: 31 YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65
Score = 38.2 bits (89), Expect = 4e-05
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E++ +NL E +++ WF+NRR K +
Sbjct: 39 EVALKINLPESRVQVWFKNRRAKCR 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 44.0 bits (104), Expect = 2e-07
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
KY + LSK L+ + +I+ WF++RR + K
Sbjct: 32 KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66
Score = 39.0 bits (91), Expect = 2e-05
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
LSK L+ + +I+ WF++RR + K
Sbjct: 40 KGLSKQLDWSVRKIQCWFRHRRNQDK 65
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 43.6 bits (103), Expect = 4e-07
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
+L++ LT+ ++ WFQN R K+++ L + +G
Sbjct: 31 NPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVSGPSSG 80
Score = 37.8 bits (88), Expect = 6e-05
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L++ LT+ ++ WFQN R K++
Sbjct: 39 QLAQKTGLTKRVLQVWFQNARAKFR 63
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding
protein, homeodomain, LIM domain; NMR {Rattus
norvegicus} SCOP: a.4.1.1
Length = 66
Score = 43.1 bits (102), Expect = 4e-07
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ +L ++ L+ I+ WFQN+R K KK+
Sbjct: 27 RPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Score = 38.1 bits (89), Expect = 4e-05
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L ++ L+ I+ WFQN+R K K
Sbjct: 35 QLVEMTGLSPRVIRVWFQNKRCKDK 59
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 43.3 bits (102), Expect = 4e-07
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ + L +T +I +WF RR K +
Sbjct: 29 NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65
Score = 38.0 bits (88), Expect = 5e-05
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
L +T +I +WF RR K +
Sbjct: 38 DRLRSETKMTRREIDSWFSERRKKVNAEET 67
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 42.3 bits (99), Expect = 2e-06
Identities = 8/49 (16%), Positives = 18/49 (36%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNR 77
+ + ++ L L+ +I +WF RR + L + +
Sbjct: 35 SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVLDSMGSGK 83
Score = 36.9 bits (85), Expect = 2e-04
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
L L+ +I +WF RR +++
Sbjct: 45 RLRVETKLSRREIDSWFSERRKLRDSMEQ 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 40.9 bits (96), Expect = 2e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
K+ + LSK L+ I+ WF+ RR + K
Sbjct: 24 KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58
Score = 37.1 bits (86), Expect = 8e-05
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
LSK L+ I+ WF+ RR + K
Sbjct: 32 EGLSKQLDWDVRSIQRWFRQRRNQEK 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 41.1 bits (96), Expect = 4e-06
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
L+ + L LT +I WF ++ +
Sbjct: 33 SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69
Score = 36.5 bits (84), Expect = 3e-04
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
L LT +I WF ++ ++
Sbjct: 43 RLRAQTKLTRREIDAWFTEKKKSKALKEE 71
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription
factor, structural genomics, loop insertion, NPPSFA;
NMR {Homo sapiens} SCOP: a.4.1.1
Length = 95
Score = 40.0 bits (93), Expect = 1e-05
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 15/51 (29%)
Query: 30 KYLSVSKRMELSKLLN---------------LTEVQIKTWFQNRRTKWKKQ 65
+Y +KR E++ N +T +++ WF NRR + K++
Sbjct: 30 QYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80
Score = 36.9 bits (85), Expect = 2e-04
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKY 27
+LS L +T +++ WF NRR + K
Sbjct: 54 KLSDLERVTSLKVYNWFANRRKEIKR 79
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 35.0 bits (81), Expect = 5e-04
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 15 KTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
++WF + YL L K +L+ +QIK W NRR K K
Sbjct: 14 ESWFAKNIE-----NPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 31.1 bits (71), Expect = 0.013
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYV 28
L K +L+ +QIK W NRR K K +
Sbjct: 33 NLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 34.8 bits (80), Expect = 0.001
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 15 KTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASK 69
++WF + YL L K +L+ +QIK W RR K K +
Sbjct: 18 ESWFAKNIE-----NPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAP 67
Score = 30.2 bits (68), Expect = 0.043
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L K +L+ +QIK W RR K K
Sbjct: 37 NLMKNTSLSRIQIKNWVAARRAKEK 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 34.8 bits (80), Expect = 0.001
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
YL L K +L+ +QIK W NRR K K
Sbjct: 54 YLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
Score = 31.8 bits (72), Expect = 0.014
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L K +L+ +QIK W NRR K K
Sbjct: 62 NLMKNTSLSRIQIKNWVSNRRRKEK 86
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 33.2 bits (75), Expect = 0.004
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
++ S + +L+K L I +WF + R WK
Sbjct: 47 TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82
Score = 30.5 bits (68), Expect = 0.049
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L+K L I +WF + R WK
Sbjct: 57 KLAKESGLARTDIVSWFGDTRYAWK 81
>1lfb_A Liver transcription factor (LFB1); transcription regulation;
2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 33.3 bits (75), Expect = 0.005
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 46 LTEVQIKTWFQNRRTKWKKQ 65
+TEV++ WF NRR + +
Sbjct: 69 VTEVRVYNWFANRRKEEAFR 88
Score = 31.7 bits (71), Expect = 0.015
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 9 LTEVQIKTWFQNRRTKWKYVDK 30
+TEV++ WF NRR + + K
Sbjct: 69 VTEVRVYNWFANRRKEEAFRHK 90
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.006
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 10/32 (31%)
Query: 64 KQLASKLKMVAHNRPTGFYFPGGGP-LIFGAQ 94
K+L + LK+ Y P L A
Sbjct: 23 KKLQASLKL---------YADDSAPALAIKAT 45
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 32.2 bits (72), Expect = 0.010
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 13 QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+K ++ N T V K ++ LN+ ++TW NRR K++
Sbjct: 22 TLKKYWDNGMTSLGSV----CREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70
Score = 28.8 bits (63), Expect = 0.18
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
++ LN+ ++TW NRR K++ +
Sbjct: 43 EAVATELNVDCEIVRTWIGNRRRKYRLMGI 72
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 31.2 bits (70), Expect = 0.010
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 50 QIKTWFQNRRTKWKKQL 66
QIK WFQNRR KWKK++
Sbjct: 2 QIKIWFQNRRMKWKKRV 18
Score = 28.8 bits (64), Expect = 0.061
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 13 QIKTWFQNRRTKWK 26
QIK WFQNRR KWK
Sbjct: 2 QIKIWFQNRRMKWK 15
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 30.9 bits (70), Expect = 0.029
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQN-RRTKWKKQL 66
Y S ++ LS+ +L+ +Q+ WF N RR L
Sbjct: 32 YPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68
Score = 28.2 bits (63), Expect = 0.23
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MELSKLLNLTEVQIKTWFQN-RRTKWK 26
LS+ +L+ +Q+ WF N RR
Sbjct: 39 ALLSQQTHLSTLQVCNWFINARRRLLP 65
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 30.0 bits (68), Expect = 0.036
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQN-RRTKWKKQL 66
Y S ++ +L++ LT +Q+ WF N RR + +
Sbjct: 25 YPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61
Score = 28.4 bits (64), Expect = 0.16
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 1 MELSKLLNLTEVQIKTWFQN-RRTKWK 26
+L++ LT +Q+ WF N RR +
Sbjct: 32 KQLAQDTGLTILQVNNWFINARRRIVQ 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 64
Score = 29.6 bits (67), Expect = 0.051
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQN-RRTKWK 63
Y S + EL+K +T Q+ WF N R K
Sbjct: 30 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63
Score = 27.7 bits (62), Expect = 0.26
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 2 ELSKLLNLTEVQIKTWFQN-RRTKWK 26
EL+K +T Q+ WF N R K
Sbjct: 38 ELAKKCGITVSQVSNWFGNKRIRYKK 63
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 29.7 bits (67), Expect = 0.068
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQN-RRTKWKKQL 66
Y S ++ LS+ NL+ +QI WF N RR L
Sbjct: 34 YPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70
Score = 28.2 bits (63), Expect = 0.24
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 1 MELSKLLNLTEVQIKTWFQN-RRTKWK 26
LS+ NL+ +QI WF N RR
Sbjct: 41 QMLSEKTNLSLLQISNWFINARRRILP 67
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 29.7 bits (67), Expect = 0.068
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQN-RRTKWKKQLAS 68
Y + ++ +++ NLT +Q+ WF N RR + +S
Sbjct: 34 YPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72
Score = 28.1 bits (63), Expect = 0.20
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 1 MELSKLLNLTEVQIKTWFQN-RRTKWK 26
+++ NLT +Q+ WF N RR +
Sbjct: 41 KQIAAQTNLTLLQVNNWFINARRRILQ 67
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 30.8 bits (68), Expect = 0.083
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 9 LTEVQIKTWFQNRRTKWKY 27
+TEV++ WF NRR + +
Sbjct: 202 VTEVRVYNWFANRRKEEAF 220
Score = 30.0 bits (66), Expect = 0.13
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 46 LTEVQIKTWFQNRRTKWKKQ 65
+TEV++ WF NRR + +
Sbjct: 202 VTEVRVYNWFANRRKEEAFR 221
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 30.2 bits (67), Expect = 0.100
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 9 LTEVQIKTWFQNRRTKWKY 27
+TEV++ WF NRR + +
Sbjct: 175 VTEVRVYNWFANRRKEEAF 193
Score = 29.8 bits (66), Expect = 0.14
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 46 LTEVQIKTWFQNRRTKWKKQ 65
+TEV++ WF NRR + +
Sbjct: 175 VTEVRVYNWFANRRKEEAFR 194
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 28.5 bits (64), Expect = 0.16
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 2 ELSKLLNLTEVQIKTWFQN-RRTKWKYVDKY 31
EL+K +T Q+ WF N R K + K+
Sbjct: 36 ELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66
Score = 28.1 bits (63), Expect = 0.20
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
Y S + EL+K +T Q+ WF N+R ++KK +
Sbjct: 28 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing
factor, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.4.1.1
Length = 76
Score = 28.4 bits (63), Expect = 0.17
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 39 ELSKLLNLTEVQIKTWFQNRRTKWKK 64
+L ++ L +I WF + R K
Sbjct: 35 KLEQITGLPRPEIIQWFGDTRYALKH 60
Score = 28.4 bits (63), Expect = 0.21
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+L ++ L +I WF + R K
Sbjct: 35 KLEQITGLPRPEIIQWFGDTRYALK 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.22
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 10/32 (31%)
Query: 88 PLIFGAQHGS-------PTAPYFFSASMLDDS 112
PL HGS PTA +F AS L +
Sbjct: 8 PLTL--SHGSLEHVLLVPTASFFI-ASQLQEQ 36
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 27.8 bits (62), Expect = 0.38
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
Y S + EL+K +T Q+ WF N+R ++KK +
Sbjct: 28 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63
Score = 27.5 bits (61), Expect = 0.46
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 1 MELSKLLNLTEVQIKTWFQN-RRTKWKYVDKY 31
EL+K +T Q+ WF N R K + K+
Sbjct: 35 EELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 26.2 bits (57), Expect = 1.1
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 33 SVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLAS 68
S + +++ +NL +K WF+ + +S
Sbjct: 29 SAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQSS 64
Score = 25.8 bits (56), Expect = 1.5
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWKYVDK 30
+++ +NL +K WF+ + V
Sbjct: 35 KIADSVNLPLDVVKKWFEKMQAGQISVQS 63
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A
{Streptococcus mutans}
Length = 255
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 11 EVQIKTWFQNR------RTKWKYVDKYLSVSKRM--ELSKLLNLTEVQIKTWFQNRRTKW 62
E+QI+T N +KY ++ KR SK+ + ++ ++ +
Sbjct: 171 EIQIRTLAMNFWATIEHSLNYKYHGEFPEDIKRRLELTSKIAFQLDEEM-RQIRDDIKEA 229
Query: 63 KKQLASKLKMV 73
+ ++ + +
Sbjct: 230 QLLFDAETRKL 240
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate,
histidine metabolism, lyase; HET: NAD URO; 1.19A
{Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A*
2v7g_A*
Length = 557
Score = 27.4 bits (60), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 86 GGPLIFGAQH---GSPTAPYFFSASMLDDSQSPRDAP 119
P++ G H GS ++P + +M D S + D P
Sbjct: 435 SAPVVIGRDHLDSGSVSSPNAETEAMRDGSDAVSDWP 471
>1x87_A Urocanase protein; structural genomics, protein STR initiative,
MCSG, PSI, midwest center for structural genomi; HET:
MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP:
e.51.1.1
Length = 551
Score = 27.0 bits (59), Expect = 1.6
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 86 GGPLIFGAQH---GSPTAPYFFSASMLDDSQSPRDAP 119
P++ G H GS +P + M D S + D P
Sbjct: 430 KAPIVIGRDHLDSGSVASPNRETEGMKDGSDAIADWP 466
>2fkn_A Urocanate hydratase; rossman fold, lyase; HET: NAD; 2.20A {Bacillus
subtilis}
Length = 552
Score = 27.0 bits (59), Expect = 1.7
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 86 GGPLIFGAQH---GSPTAPYFFSASMLDDSQSPRDAP 119
P++ G H GS +P + +M D S + D
Sbjct: 431 KAPVVIGRDHLDCGSVASPNRETEAMKDGSDAVGDWA 467
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 25.2 bits (54), Expect = 3.7
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 45 NLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
+TEV++ WF NRR K+ A + K+ +
Sbjct: 65 LVTEVRVYNWFANRR----KEEAFRQKLAMDAYSSN 96
Score = 24.8 bits (53), Expect = 5.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 8 NLTEVQIKTWFQNRR 22
+TEV++ WF NRR
Sbjct: 65 LVTEVRVYNWFANRR 79
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 25.1 bits (55), Expect = 6.3
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 13 QIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
I + + + L+ ++ E++K +T +Q++ WF N+R + K
Sbjct: 371 AISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>3mop_A Myeloid differentiation primary response protein; death domain
complex, helical symmetry, single-stranded HELI
assembly; 3.40A {Homo sapiens}
Length = 110
Score = 24.4 bits (53), Expect = 7.2
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 9/41 (21%)
Query: 32 LSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
L++ R LS LN+ W LA ++
Sbjct: 7 LNMRVRRRLSLFLNVRTQVAADW---------TALAEEMDF 38
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 24.0 bits (51), Expect = 8.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTK 24
+++S + L + +K WF+ R+
Sbjct: 36 LKISIAVGLPQEFVKEWFEQRKVY 59
Score = 24.0 bits (51), Expect = 8.2
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 38 MELSKLLNLTEVQIKTWFQNRRTK 61
+++S + L + +K WF+ R+
Sbjct: 36 LKISIAVGLPQEFVKEWFEQRKVY 59
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 23.6 bits (50), Expect = 8.7
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+ L + +LS+ L+ Q+ WF +R + +
Sbjct: 29 QQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPAE 63
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.410
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,708,512
Number of extensions: 85522
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 159
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)