RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4877
(120 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 57.9 bits (140), Expect = 2e-13
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++YL+ +R+E++ L+LTE QIK WFQNRR KWKK+
Sbjct: 19 NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
Score = 44.8 bits (106), Expect = 3e-08
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L+LTE QIK WFQNRR KWK
Sbjct: 28 IEIAHALSLTERQIKIWFQNRRMKWK 53
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 56.4 bits (136), Expect = 2e-12
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLK 71
+ YL+ +R E+++LLNLTE Q+K WFQNRR K KK + K
Sbjct: 35 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAK 77
Score = 44.4 bits (105), Expect = 7e-08
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E+++LLNLTE Q+K WFQNRR K K
Sbjct: 45 EVARLLNLTERQVKIWFQNRRMKMK 69
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 55.5 bits (134), Expect = 2e-12
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
K+ + LSK L+ I+ WF+ RR + K
Sbjct: 17 KHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
Score = 44.7 bits (106), Expect = 3e-08
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
LSK L+ I+ WF+ RR + K
Sbjct: 26 GLSKQLDWDVRSIQRWFRQRRNQEK 50
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 55.6 bits (134), Expect = 2e-12
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
Y V R L+ ++L E +I+ WF NRR KW+++
Sbjct: 23 THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 59
Score = 45.6 bits (108), Expect = 2e-08
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L+ ++L E +I+ WF NRR KW+
Sbjct: 33 RLAAKIDLPEARIQVWFSNRRAKWR 57
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 52.5 bits (126), Expect = 3e-11
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
KYLS +R L+K+L L+E Q+KTWFQNRR KW++
Sbjct: 21 TQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
Score = 41.7 bits (98), Expect = 4e-07
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L+K+L L+E Q+KTWFQNRR KW+
Sbjct: 32 RLAKMLQLSERQVKTWFQNRRAKWR 56
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 51.7 bits (124), Expect = 6e-11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
KY + LSK L+ + +I+ WF++RR + K
Sbjct: 25 KYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
Score = 42.4 bits (100), Expect = 2e-07
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
LSK L+ + +I+ WF++RR + K
Sbjct: 34 GLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 50.9 bits (122), Expect = 1e-10
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 15 KTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
++WF YL L K +L+ +QIK W NRR K K
Sbjct: 14 ESWFAKNIEN-----PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Score = 41.3 bits (97), Expect = 6e-07
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
L K +L+ +QIK W NRR K K
Sbjct: 33 NLMKNTSLSRIQIKNWVSNRRRKEK 57
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 50.3 bits (120), Expect = 2e-10
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ Y+S +R EL+ LNL E IK WFQNRR K K+Q
Sbjct: 21 ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
Score = 40.3 bits (94), Expect = 2e-06
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+ LNL E IK WFQNRR K K
Sbjct: 30 CELAAQLNLPESTIKVWFQNRRMKDK 55
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 50.3 bits (120), Expect = 2e-10
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
K+++ KR ++S +L+E QI WFQNRR K KK
Sbjct: 24 KFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
Score = 42.6 bits (100), Expect = 2e-07
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
++S +L+E QI WFQNRR K K
Sbjct: 32 RKISAATSLSERQITIWFQNRRVKEK 57
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 50.8 bits (121), Expect = 3e-10
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 16 TWFQNRRTKWKY-VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
T Q + ++ +KYLS ++R+E++ L L E Q+K WFQNRR K KK+
Sbjct: 35 TTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 85
Score = 41.9 bits (98), Expect = 8e-07
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+E++ L L E Q+K WFQNRR K K
Sbjct: 58 VEIAATLELNETQVKIWFQNRRMKQK 83
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 50.3 bits (120), Expect = 3e-10
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQL 66
+ Y S + EL+K +T Q+ WF N+R ++KK +
Sbjct: 26 NPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63
Score = 41.1 bits (96), Expect = 9e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
EL+K +T Q+ WF N+R ++K
Sbjct: 36 ELAKKCGITVSQVSNWFGNKRIRYK 60
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 48.7 bits (116), Expect = 9e-10
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ + +L ++ L+ I+ WFQN+R K KK+
Sbjct: 25 NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Score = 41.0 bits (96), Expect = 9e-07
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+L ++ L+ I+ WFQN+R K K
Sbjct: 34 EQLVEMTGLSPRVIRVWFQNKRCKDK 59
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 49.2 bits (117), Expect = 9e-10
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
V+K+ + ++ LTE Q + WF+ R +W++
Sbjct: 22 KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60
Score = 39.6 bits (92), Expect = 4e-06
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
++ LTE Q + WF+ R +W+
Sbjct: 34 LIAAEAGLTEEQTQKWFKQRLAEWR 58
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 47.8 bits (114), Expect = 2e-09
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 15 KTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
++W Y + ++ +++ NLT +Q+ WF N R + +
Sbjct: 18 RSWLFQHIGH-----PYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
Score = 38.9 bits (91), Expect = 6e-06
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTK 24
+++ NLT +Q+ WF N R +
Sbjct: 37 QIAAQTNLTLLQVNNWFINARRR 59
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 48.0 bits (114), Expect = 2e-09
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 31 YLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
S + M +++ LNL + ++ WF NRR + K+
Sbjct: 23 KPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57
Score = 39.5 bits (92), Expect = 3e-06
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+++ LNL + ++ WF NRR + K
Sbjct: 31 RMAEELNLEKEVVRVWFCNRRQREK 55
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 47.6 bits (113), Expect = 2e-09
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+Y + R EL++ NLTE +I+ WFQNRR + +KQ
Sbjct: 24 TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Score = 39.9 bits (93), Expect = 3e-06
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
EL++ NLTE +I+ WFQNRR + +
Sbjct: 34 ELAQRTNLTEARIQVWFQNRRARLR 58
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 46.9 bits (111), Expect = 5e-09
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++Y +S R E++ NLTE +++ WF+NRR KW+K+
Sbjct: 23 NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
Score = 37.6 bits (87), Expect = 2e-05
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
E++ NLTE +++ WF+NRR KW+
Sbjct: 32 EEIAVWTNLTEARVRVWFKNRRAKWR 57
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 47.0 bits (111), Expect = 5e-09
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 16 TWFQNRRTKWKY--VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ + V Y LS L+L + I +FQN+R K
Sbjct: 15 SLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66
Score = 37.4 bits (86), Expect = 2e-05
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
LS L+L + I +FQN+R K
Sbjct: 40 TLSAQLDLPKHTIIKFFQNQRYHVK 64
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 46.5 bits (110), Expect = 6e-09
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 24 KWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
K ++ + +++ LN+ + I+ WF NRR K K+
Sbjct: 15 KSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
Score = 36.8 bits (85), Expect = 3e-05
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+++ LN+ + I+ WF NRR K K
Sbjct: 30 LIAEQLNMEKEVIRVWFSNRRQKEK 54
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 46.9 bits (111), Expect = 6e-09
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YL+ + +LS L L Q+K WF+NRR + K Q
Sbjct: 23 GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 59
Score = 39.1 bits (91), Expect = 6e-06
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+LS L L Q+K WF+NRR + K
Sbjct: 32 ADLSAKLALGTAQVKIWFKNRRRRHK 57
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 46.1 bits (109), Expect = 1e-08
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
KYLS +R L+ +++LT Q+K WFQN R K K+Q
Sbjct: 24 QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60
Score = 39.1 bits (91), Expect = 5e-06
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+ +++LT Q+K WFQN R K K
Sbjct: 33 EHLASMIHLTPTQVKIWFQNHRYKMK 58
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 45.7 bits (108), Expect = 1e-08
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKK 64
+YLS+++R E S L+LTE Q+K WFQNRR K K+
Sbjct: 22 KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
Score = 39.1 bits (91), Expect = 4e-06
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 7 LNLTEVQIKTWFQNRRTKWK 26
L+LTE Q+K WFQNRR K K
Sbjct: 37 LSLTETQVKIWFQNRRAKAK 56
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 45.2 bits (107), Expect = 1e-08
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRR 59
+K S ++ +S+ L L + +F N R
Sbjct: 20 NKRPSKELQITISQQLGLELSTVSNFFMNAR 50
Score = 37.9 bits (88), Expect = 1e-05
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 1 MELSKLLNLTEVQIKTWFQNRR 22
+ +S+ L L + +F N R
Sbjct: 29 ITISQQLGLELSTVSNFFMNAR 50
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 46.2 bits (109), Expect = 1e-08
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 15/52 (28%)
Query: 29 DKYLSVSKRMELSKLLN---------------LTEVQIKTWFQNRRTKWKKQ 65
++Y +KR E++ N +T +++ WF NRR + K++
Sbjct: 22 NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 73
Score = 39.7 bits (92), Expect = 5e-06
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+LS L +T +++ WF NRR + K
Sbjct: 46 KKLSDLERVTSLKVYNWFANRRKEIK 71
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 45.8 bits (108), Expect = 2e-08
Identities = 3/39 (7%), Positives = 9/39 (23%)
Query: 27 YVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+ + + + +K W N +
Sbjct: 41 WRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
Score = 40.0 bits (93), Expect = 4e-06
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
+ + +K W N +
Sbjct: 53 QFCAETGVRRQVLKIWMHNNKNSGP 77
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 45.3 bits (107), Expect = 2e-08
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWK 63
+ L+ ++ E++K +T +Q++ WF N+R + K
Sbjct: 19 KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
Score = 36.4 bits (84), Expect = 5e-05
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
E++K +T +Q++ WF N+R + K
Sbjct: 29 EVAKKCGITPLQVRVWFINKRMRSK 53
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 45.4 bits (107), Expect = 2e-08
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 8 NLTEVQIKTWFQNRRTKWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
++ + S+ + ++ L L + ++ WF NRR K K+
Sbjct: 14 SIENRVRWSL-----ETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
Score = 36.1 bits (83), Expect = 7e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 2 ELSKLLNLTEVQIKTWFQNRRTKWK 26
++ L L + ++ WF NRR K K
Sbjct: 40 HIANQLGLEKDVVRVWFCNRRQKGK 64
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 44.5 bits (105), Expect = 3e-08
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 29 DKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTK 61
++YL+ +R +LS L L E QIK WFQN R K
Sbjct: 21 NRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
Score = 39.8 bits (93), Expect = 2e-06
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 3 LSKLLNLTEVQIKTWFQNRRTK 24
LS L L E QIK WFQN R K
Sbjct: 32 LSSELGLNEAQIKIWFQNARAK 53
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 43.1 bits (101), Expect = 2e-07
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 28 VDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
+YLS +R L+ L+ LT Q+K WFQN R K K+
Sbjct: 30 QQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67
Score = 35.0 bits (80), Expect = 2e-04
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L+ L+ LT Q+K WFQN R K K
Sbjct: 40 EHLASLIRLTPTQVKIWFQNHRYKTK 65
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.4 bits (99), Expect = 3e-07
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 24 KWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQ 65
L+ + L LT +I WF ++ +
Sbjct: 21 ASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 62
Score = 34.3 bits (78), Expect = 4e-04
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
L LT +I WF ++
Sbjct: 35 NRLRAQTKLTRREIDAWFTEKKKSKA 60
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 40.5 bits (94), Expect = 2e-06
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 21/58 (36%)
Query: 29 DKYLSVSKRMELSKLLN---------------------LTEVQIKTWFQNRRTKWKKQ 65
K S +R L + N +TEV++ WF NRR + +
Sbjct: 19 QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76
Score = 37.1 bits (85), Expect = 5e-05
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+ +TEV++ WF NRR +
Sbjct: 49 AQGLGSNLVTEVRVYNWFANRRKEEA 74
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 39.3 bits (91), Expect = 5e-06
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 24 KWKYVDKYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTG 80
+ ++ +L ++ L +I WF + R K + A +G
Sbjct: 20 SFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLKWFRDNASGPSSG 76
Score = 30.1 bits (67), Expect = 0.018
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 1 MELSKLLNLTEVQIKTWFQNRRTKWK 26
+L ++ L +I WF + R K
Sbjct: 34 QKLEQITGLPRPEIIQWFGDTRYALK 59
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase)
{Cellvibrio cellulosa [TaxId: 155077]}
Length = 324
Score = 30.6 bits (69), Expect = 0.035
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 42 KLLNLTEVQIKTWFQNRRTKWKKQLASKLKMVAHNRPTGFYFPGGGPLIFGAQHGSPTAP 101
++L L W N RTKW A ++++ + GG P
Sbjct: 4 RMLTLDGNPAANWLNNARTKWSASRAD--VVLSYQQN-----NGGWPKNLDYNS-VGNGG 55
Query: 102 YFFSASMLDD 111
+ +D+
Sbjct: 56 GGNESGTIDN 65
Score = 24.5 bits (53), Expect = 4.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 5 KLLNLTEVQIKTWFQNRRTKWK 26
++L L W N RTKW
Sbjct: 4 RMLTLDGNPAANWLNNARTKWS 25
>d1o20a_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 28.5 bits (62), Expect = 0.21
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 64 KQLASKLK--MVAHNRPTGFYFPGGGPLIFGAQHGSPT 99
K+ S++ V N T F GG FGA+ G T
Sbjct: 350 KKFVSEIDAAAVYVNAST--RFTDGGQFGFGAEIGIST 385
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 26.7 bits (59), Expect = 0.80
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 87 GPLIFGAQH---GSPTAPYFFSASMLDDSQSPRDAP 119
P++ G H GS +P + M D S + D P
Sbjct: 425 APIVIGRDHLDSGSVASPNRETEGMKDGSDAIADWP 460
>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
{Archaeon Methanosarcina barkeri [TaxId: 2208]}
Length = 457
Score = 24.2 bits (52), Expect = 4.7
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 88 PLIFGAQHGSPTAPYFFSASMLDDSQSPR 116
P++ G GSP + F + +
Sbjct: 123 PIVQGGPTGSPISEDVFMPVHMSYALEKE 151
>d1wmga_ a.77.1.2 (A:) Netrin receptor UNC5B {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 23.3 bits (50), Expect = 5.3
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 9/41 (21%)
Query: 32 LSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKM 72
+ +S R ++ L+ + W + LA KL M
Sbjct: 5 IPLSIRQKICSSLDAPNSRGNDW---------RLLAQKLSM 36
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 24.0 bits (51), Expect = 6.3
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 30 KYLSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKL-KMVAHNRPTGFYFP 84
KY + +K+ E+ ++K N + + +K+ K+ + + FP
Sbjct: 2 KYFTTNKKGEIF--------ELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFP 49
>d1puza_ a.218.1.1 (A:) Hypothetical protein NMA1147 {Neisseria
meningitidis, mc58 [TaxId: 487]}
Length = 82
Score = 22.8 bits (49), Expect = 7.3
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 26 KYVDKY---LSVSKRMELSKLLNLTEVQIKTWFQNRRTKWKKQLASKLKMV 73
++++K LS + E S++L + ++ K L L+ +
Sbjct: 29 RFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDKGHLIPMLEKI 79
>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
heparinus (Flavobacterium heparinum) [TaxId: 984]}
Length = 264
Score = 23.7 bits (51), Expect = 7.8
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 14/58 (24%)
Query: 74 AHNRPTGFYFPGGGPL-------------IFGAQHGSPTAPYFFSASMLDDSQSPRDA 118
+ G+YFP G L I + + F ++ P +A
Sbjct: 185 LLHDAIGYYFPEGANLSLSTQSQKGNWFHINNSHSKDEVSGDVFKLW-INHGARPENA 241
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.410
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 427,635
Number of extensions: 16992
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 75
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)