BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy488
         (86 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9CWY4|GEMI7_MOUSE Gem-associated protein 7 OS=Mus musculus GN=Gemin7 PE=2 SV=1
          Length = 129

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 11  DEEIAAEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIGTF 70
           ++   A +RE++L+++ ++ G P +  + E   VTA+F  T+ D+  FYV  L+TPIG  
Sbjct: 53  EQRARATLRERYLRSLLAMVGHPVSFTLHEGVHVTAQFGATDLDVANFYVSQLQTPIGVQ 112

Query: 71  HEHALLRVDDIV 82
            E ALLR  DI+
Sbjct: 113 AE-ALLRCSDII 123


>sp|Q17QA0|GEMI7_BOVIN Gem-associated protein 7 OS=Bos taurus GN=GEMIN7 PE=2 SV=1
          Length = 125

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 11  DEEIAAEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIGTF 70
           +++  A +RE++L+++ ++ G+P    + E   V A F  T+ D+  FYV  L+TPIG  
Sbjct: 49  EQQARASLRERYLRSLLAMVGRPVCFTLHEGVQVIAHFGATDLDVANFYVSQLQTPIG-I 107

Query: 71  HEHALLRVDDIV 82
              ALLR  DI+
Sbjct: 108 QAEALLRCSDII 119


>sp|Q9H840|GEMI7_HUMAN Gem-associated protein 7 OS=Homo sapiens GN=GEMIN7 PE=1 SV=1
          Length = 131

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)

Query: 2   DVDRTSSRSDEEIA-AEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYV 60
            + + S  S E+ A A +RE++L+++ ++ G   +  + E   V A F  T+ D+  FYV
Sbjct: 45  PIAQESLESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYV 104

Query: 61  RNLKTPIGTFHEHALLRVDDIV 82
             L+TPIG   E ALLR  DI+
Sbjct: 105 SQLQTPIGVQAE-ALLRCSDII 125


>sp|G2TRR1|GEMI7_SCHPO Gem-associated protein 7 homolog OS=Schizosaccharomyces pombe
          (strain 972 / ATCC 24843) GN=new17 PE=2 SV=1
          Length = 91

 Score = 36.6 bits (83), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 21 KFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIGTFHEHALLRVDD 80
          KF + M+S +  P T+ + ++  V AEF   +S  ++  V NL+T  G  +  A++R  D
Sbjct: 19 KFYQKMAS-ARIPITVYLHDQREVKAEFGAIDSSESKLAVSNLQTDWGVIN-RAVIRTGD 76

Query: 81 IVDIE 85
          +V IE
Sbjct: 77 VVGIE 81


>sp|P56282|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1
          SV=2
          Length = 527

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 17 EMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIGTF 70
          E+ +K  K ++++  QP + NM ER+VV A  Q  +  + E  + ++   IG F
Sbjct: 40 ELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQECSQSVDE-TIEHVFNIIGAF 92


>sp|P32553|VP2_AHSV4 Outer capsid protein VP2 OS=African horse sickness virus 4 GN=S2
           PE=3 SV=2
          Length = 1060

 Score = 29.6 bits (65), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 1   MDVDRTSSRSDEEIAAEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGT 51
           +DVD    +  E I  E+ EK  KA +   GQPC +++    V+T    GT
Sbjct: 377 VDVDPNKGKWKEHIK-EVTEKLKKAQTENGGQPCQVSIDGVNVLTNVDYGT 426


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.362 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,593,772
Number of Sequences: 539616
Number of extensions: 868839
Number of successful extensions: 2157
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2152
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 191,569,459
effective HSP length: 56
effective length of query: 30
effective length of database: 161,350,963
effective search space: 4840528890
effective search space used: 4840528890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)