RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy488
         (86 letters)



>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex,
          RNA binding protein; 2.00A {Homo sapiens}
          Length = 85

 Score = 78.1 bits (192), Expect = 4e-21
 Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 7  SSRSDEEIAAEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTP 66
              ++   A +RE++L+++ ++ G   +  + E   V A F  T+ D+  FYV  L+TP
Sbjct: 5  LESQEQRARAALRERYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQTP 64

Query: 67 IGTFHEHALLRVDDIVDIEI 86
          IG   E ALLR  DI+    
Sbjct: 65 IGVQAE-ALLRCSDIISYTF 83


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 23/98 (23%), Positives = 33/98 (33%), Gaps = 30/98 (30%)

Query: 10  SDEEIA--AEMREKFLKAMSSL-----SGQPCTI-----NMFERTV--------VTAEFQ 49
           +D+E    AE+  KFL  +SSL      GQ   +       FE           + A+  
Sbjct: 50  ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109

Query: 50  GTNS-------DLTEFYVR---NLKTPIGTFHEHALLR 77
             N        +L + Y+      K P       AL R
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147



 Score = 33.5 bits (76), Expect = 0.004
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 15  AAEMREKFLKAMSSLSGQPCTINMFERTVV---TAEFQGTNSDLTEF-----YVRNLKTP 66
           A++++E+F K +   +      +  E T       +F G  S L E      + + L   
Sbjct: 30  ASQLQEQFNKILPEPTEGFAADD--EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87

Query: 67  IGTFHEHALLRVDDI 81
           +  F E+  L  +DI
Sbjct: 88  LTEF-ENCYLEGNDI 101


>1bcp_B Pertussis toxin; ADP-ribosyltransferase, transferase, whooping
           cough; HET: ATP; 2.70A {Bordetella pertussis} SCOP:
           b.40.2.1 d.169.1.2 PDB: 1pto_H* 1prt_B 1pto_B* 1bcp_C*
           1prt_C 1pto_C*
          Length = 199

 Score = 29.7 bits (66), Expect = 0.078
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 15  AAEMREKFLKAMSSLSGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIG 68
           A +++  F    +  +GQP T + +     T     TNS L   +VR+ +  IG
Sbjct: 79  AFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIG 132


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.7 bits (58), Expect = 1.2
 Identities = 3/16 (18%), Positives = 10/16 (62%)

Query: 71  HEHALLRVDDIVDIEI 86
           +E+ LL + ++ + + 
Sbjct: 243 YENCLLVLLNVQNAKA 258


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0812    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,313,367
Number of extensions: 64902
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)