RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy488
         (86 letters)



>d1prtb1 b.40.2.1 (B:90-199) Pertussis toxin S2/S3 subunits,
          C-terminal domain {Bordetella pertussis [TaxId: 520]}
          Length = 110

 Score = 25.3 bits (55), Expect = 0.64
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 30 SGQPCTINMFERTVVTAEFQGTNSDLTEFYVRNLKTPIG 68
          +GQP T + +     T     TNS L   +VR+ +  IG
Sbjct: 5  TGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIG 43


>d1fvia1 b.40.4.6 (A:190-293) ATP-dependent DNA ligase {Chlorella
          virus PBCV-1 [TaxId: 10506]}
          Length = 104

 Score = 23.3 bits (50), Expect = 4.1
 Identities = 6/26 (23%), Positives = 9/26 (34%)

Query: 17 EMREKFLKAMSSLSGQPCTINMFERT 42
          + R  F +   S  G+      FE  
Sbjct: 65 DQRRDFWQNKESYIGKMVKFKYFEMG 90


>d2r7ga1 a.74.1.3 (A:380-578) Retinoblastoma tumor suppressor
          domains {Human (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 5/32 (15%), Positives = 10/32 (31%)

Query: 4  DRTSSRSDEEIAAEMREKFLKAMSSLSGQPCT 35
                S  +   ++   F +  +   GQ C 
Sbjct: 29 TVNPKESILKRVKDIGYIFKEKFAKAVGQGCV 60


>d1f35a_ b.94.1.1 (A:) Olfactory marker protein {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 162

 Score = 23.0 bits (49), Expect = 5.3
 Identities = 9/30 (30%), Positives = 11/30 (36%)

Query: 41  RTVVTAEFQGTNSDLTEFYVRNLKTPIGTF 70
           +  +T   Q    DLT    R L  P   F
Sbjct: 76  KVTITGTSQNWTPDLTNLMTRQLLDPAAIF 105


>d1egxa_ b.55.1.4 (A:) Vasodilator-stimulated phosphoprotein (VASP)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 22.6 bits (48), Expect = 7.5
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 10  SDEEIAAEMREKFLKAMSSLSG 31
             +E AA+       A+ +L G
Sbjct: 94  GSKEDAAQFAAGMASALEALEG 115


>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related
           At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 215

 Score = 22.8 bits (48), Expect = 8.6
 Identities = 3/24 (12%), Positives = 10/24 (41%)

Query: 3   VDRTSSRSDEEIAAEMREKFLKAM 26
            +R    +  E+  E  +  ++ +
Sbjct: 180 AERCLENASGEVLGEAEDVLVRVL 203


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.362 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 306,700
Number of extensions: 11698
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 11
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (21.9 bits)