BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4880
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S2Q|A Chain A, The Crystal Structure Of At5g51720 (At-Neet)
pdb|3S2Q|B Chain B, The Crystal Structure Of At5g51720 (At-Neet)
Length = 83
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
+NP+I KN DK+VD L+ + T +CRCWRS FP C+G H +NK GDNVGP+L
Sbjct: 21 INPEIRKNE-DKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLL 79
Query: 111 IRRS 114
+++
Sbjct: 80 LKKQ 83
>pdb|2QD0|A Chain A, Crystal Structure Of Mitoneet
pdb|2QD0|B Chain B, Crystal Structure Of Mitoneet
Length = 81
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 16 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 112 RRSK 115
++ +
Sbjct: 75 KKKE 78
>pdb|3REE|A Chain A, Crystal Structure Of Mitoneet
Length = 84
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 14 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 72
Query: 112 RRSK 115
++ +
Sbjct: 73 KKKE 76
>pdb|3EW0|A Chain A, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
pdb|3EW0|B Chain B, The Novel 2fe-2s Outer Mitochondrial Protein Mitoneet
Displays Conformational Flexibility In Its N-Terminal
Cytoplasmic Tethering Domain
Length = 80
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 17 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 75
Query: 112 RRSK 115
++ +
Sbjct: 76 KKKE 79
>pdb|2R13|A Chain A, Crystal Structure Of Human Mitoneet Reveals A Novel [2fe-
2s] Cluster Coordination
Length = 79
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 16 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 74
Query: 112 RRSK 115
++ +
Sbjct: 75 KKKE 78
>pdb|2QH7|A Chain A, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
pdb|2QH7|B Chain B, Mitoneet Is A Uniquely Folded 2fe-2s Outer Mitochondrial
Membrane Protein Stabilized By Pioglitazone
Length = 76
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 13 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
++ +
Sbjct: 72 KKKE 75
>pdb|4F28|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
pdb|4F28|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Met
62 Replaced By A Gly
Length = 76
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 13 INLHIQKDNP-KIVHAFDGEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
++ +
Sbjct: 72 KKKE 75
>pdb|4F2C|A Chain A, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
pdb|4F2C|B Chain B, The Crystal Structure Of A Human Mitoneet Double Mutant In
Which Gly 66 Are Asp 67 Are Both Replaced With Ala
Residues
Length = 76
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 13 INLHIQKDNP-KIVHAFDMEDLAAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
++ +
Sbjct: 72 KKKE 75
>pdb|3S2R|A Chain A, Atchloroneet (H87c Mutant)
pdb|3S2R|B Chain B, Atchloroneet (H87c Mutant)
Length = 83
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
+NP+I KN DK+VD L+ + T +CRCWRS FP C+G +NK GDNVGP+L
Sbjct: 21 INPEIRKNE-DKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLL 79
Query: 111 IRRS 114
+++
Sbjct: 80 LKKQ 83
>pdb|4F1E|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|C Chain C, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|D Chain D, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|E Chain E, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|F Chain F, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|G Chain G, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|H Chain H, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|I Chain I, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|J Chain J, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|K Chain K, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|L Chain L, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|M Chain M, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|N Chain N, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|O Chain O, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|P Chain P, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|Q Chain Q, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
pdb|4F1E|R Chain R, The Crystal Structure Of A Human Mitoneet Mutant With Asp
67 Replaced By A Gly
Length = 76
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L +CRCWRS+ FP+C+G H +N+ GDNVGP++I
Sbjct: 13 INLHIQKDNP-KIVHAFDMEDLGGKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLII 71
Query: 112 RRSK 115
++ +
Sbjct: 72 KKKE 75
>pdb|4EZF|A Chain A, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
pdb|4EZF|B Chain B, The Crystal Structure Of A Human Mitoneet Mutant With An
Ala Inserted Between Asp 67 And Lys 68
Length = 77
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTA-FCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
+N I K++ KIV FD +L D A +CRCWRS+ FP+C+G H +N+ GDNVGP++
Sbjct: 13 INLHIQKDNP-KIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLI 71
Query: 111 IRRSK 115
I++ +
Sbjct: 72 IKKKE 76
>pdb|3LPQ|A Chain A, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
pdb|3LPQ|B Chain B, Human Mitoneet With 2fe-2s Coordinating Ligand His 87
Replaced With Cys
Length = 79
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILI 111
+N I K++ KIV FD +L D +CRCWRS+ FP+C+G +N+ GDNVGP++I
Sbjct: 17 INLHIQKDNP-KIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGACTKHNEETGDNVGPLII 75
Query: 112 RRSK 115
++ +
Sbjct: 76 KKKE 79
>pdb|3FNV|A Chain A, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
pdb|3FNV|B Chain B, Crystal Structure Of Miner1: The Redox-Active 2fe-2s
Protein Causative In Wolfram Syndrome 2
Length = 83
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 52 VNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
+N I K + K+V+ + +L+ A+CRCWRS+ FP C+G H+ +N+L GDNVGP++
Sbjct: 19 INLKIQKENP-KVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLI 77
Query: 111 IRRSKL 116
+++ ++
Sbjct: 78 LKKKEV 83
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 67 YFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL 102
YFD P + AF + + FP C ++ +N LL
Sbjct: 20 YFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLL 55
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 67 YFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL 102
YFD P + AF + + FP C ++ +N LL
Sbjct: 20 YFDLPPMEMSVAFPQATPASTFPPCTSDYYHFNDLL 55
>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
Length = 423
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 45 PTHVLVHVNPDIHK--NHADKIVDYFDKPNLTDFTAFCRCWRSRDFPY 90
P VL NP++ N A + DY D+ + F C+ S Y
Sbjct: 203 PLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAY 250
>pdb|2EL9|A Chain A, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|B Chain B, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|C Chain C, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
pdb|2EL9|D Chain D, Crystal Structure Of E.Coli Histidyl-Trna Synthetase
Complexed With A Histidyl-Adenylate Analogue
Length = 431
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 45 PTHVLVHVNPDIHK--NHADKIVDYFDKPNLTDFTAFCRCWRSRDFPY 90
P VL NP++ N A + DY D+ + F C+ S Y
Sbjct: 211 PLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAY 258
>pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
Length = 424
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 45 PTHVLVHVNPDIHK--NHADKIVDYFDKPNLTDFTAFCRCWRSRDFPY 90
P VL NP++ N A + DY D+ + F C+ S Y
Sbjct: 204 PLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLLESAGIAY 251
>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And
Catalytic Unit Of The Ras Activator Son Of Sevenless
(Sos)
Length = 1049
Score = 26.6 bits (57), Expect = 4.5, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 925 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 982
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 983 VESDIKRFF-ENLNPM 997
>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang.
pdb|1XDV|B Chain B, Experimentally Phased Structure Of Human The Son Of
Sevenless Protein At 4.1 Ang
Length = 847
Score = 26.6 bits (57), Expect = 4.9, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 728 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 785
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 786 VESDIKRFF-ENLNPM 800
>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
pdb|1XD4|B Chain B, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of
Sevenless (Sos)
Length = 852
Score = 26.6 bits (57), Expect = 5.2, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 728 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 785
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 786 VESDIKRFF-ENLNPM 800
>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1
Length = 477
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 358 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 415
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 416 VESDIKRFF-ENLNPM 430
>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless
(Rem-Cdc25) In The Absence Of Ras
Length = 490
Score = 25.8 bits (55), Expect = 8.0, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 366 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 423
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 424 VESDIKRFF-ENLNPM 438
>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 484
Score = 25.8 bits (55), Expect = 8.2, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 360 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 417
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 418 VESDIKRFF-ENLNPM 432
>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVV|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVX|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 481
Score = 25.8 bits (55), Expect = 8.3, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 34 PSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNG 93
P PFF NP++ K H +++++ + + + T + ++++ PYC
Sbjct: 360 PCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEIQQYQNQ--PYCLR 417
Query: 94 FHHDYNKLLGDNVGPI 109
D + +N+ P+
Sbjct: 418 VESDIKRFF-ENLNPM 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.487
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,053,098
Number of Sequences: 62578
Number of extensions: 214050
Number of successful extensions: 460
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 27
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)