Query psy4880
Match_columns 137
No_of_seqs 140 out of 633
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 20:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4880.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4880hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3461|consensus 99.8 5.5E-21 1.2E-25 145.9 4.5 66 49-115 66-131 (132)
2 COG3369 Zinc finger domain con 99.7 1.5E-18 3.3E-23 122.9 4.1 56 42-102 1-56 (78)
3 PF09360 zf-CDGSH: Iron-bindin 99.6 6E-17 1.3E-21 100.5 1.9 38 41-96 1-38 (38)
4 smart00704 ZnF_CDGSH CDGSH-typ 99.5 8.7E-15 1.9E-19 91.1 4.2 27 74-100 11-37 (38)
5 KOG4605|consensus 99.0 3.8E-10 8.3E-15 86.3 4.8 45 74-121 55-99 (129)
6 KOG4605|consensus 98.0 5.5E-06 1.2E-10 63.7 2.8 27 74-100 94-120 (129)
7 PF14283 DUF4366: Domain of un 16.1 72 0.0016 26.4 1.0 16 9-24 166-181 (218)
8 PRK09697 protein secretion pro 15.5 44 0.00095 26.1 -0.4 16 8-23 36-53 (139)
9 COG4647 AcxC Acetone carboxyla 13.0 2.2E+02 0.0047 22.8 2.9 15 75-93 68-82 (165)
10 PF05798 Phage_FRD3: Bacteriop 11.7 93 0.002 22.2 0.4 6 90-95 57-62 (75)
No 1
>KOG3461|consensus
Probab=99.82 E-value=5.5e-21 Score=145.89 Aligned_cols=66 Identities=48% Similarity=0.957 Sum_probs=62.5
Q ss_pred ecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880 49 LVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115 (137)
Q Consensus 49 ~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~ 115 (137)
.|.+|+.|+++ +.|+||.+++|++.++.++||||+|+++|||||||.+++.++|||++|+++++++
T Consensus 66 ~a~iN~hIqkd-~pKIVd~~d~eDl~~ka~yCrCWrs~kfP~CDGsh~KhNk~tgdNvgpliikk~~ 131 (132)
T KOG3461|consen 66 KARINLHIQKD-NPKIVDAFDMEDLGDKAAYCRCWRSKKFPLCDGSHGKHNKETGDNVGPLIIKKKE 131 (132)
T ss_pred CccccceeecC-CCceeEEEehhhhcccceEEEeeccCCcccccCcccccccccccccccceeeecc
Confidence 57889999999 8999999999999999999999999999999999999999999999999988765
No 2
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=99.74 E-value=1.5e-18 Score=122.89 Aligned_cols=56 Identities=25% Similarity=0.344 Sum_probs=42.4
Q ss_pred cCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccC
Q psy4880 42 MAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL 102 (137)
Q Consensus 42 ~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~ 102 (137)
+||||+|+| .+.|..+..+...... +...+++|||||+|.|||||||||++++|+.
T Consensus 1 ~nGPy~v~~--~~riv~~~~gh~~~~~---~g~~~~~LCrCG~S~NKPfCDGtH~k~gf~g 56 (78)
T COG3369 1 KNGPYLVRG--RLRIVTHTAGHPEEVK---DGDEQAALCRCGHSENKPFCDGTHKKTGFDG 56 (78)
T ss_pred CCCceeccc--eEEEeecCCCCcEEEe---ecceEEEEEeccCcCCCCccCCccccccccC
Confidence 599999999 5566666444322211 2246899999999999999999999999953
No 3
>PF09360 zf-CDGSH: Iron-binding zinc finger CDGSH type; InterPro: IPR018967 This entry represents iron-sulphur domain containing proteins that have a CDGSH sequence motif (although the Ser residue can also be an Ala or Thr), and is found in proteins from a wide range of organisms with the exception of fungi. The CDGSH-type domain binds a redox-active pH-labile 2Fe-2S cluster. The conserved sequence C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H is a defining feature of this family []. CDGSH-type domains are found in mitoNEET, an iron-containing integral protein of the outer mitochondrian membrane (OMM). MitoNEET forms a dimeric structure with a NEET fold, and contains two domains: a beta-cap region and a cluster-binding domain that coordinated two acid-labile 2Fe-2S clusters (one bound to each protomer) []. The CDGSH iron-sulphur domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by a more N-terminal domain found in higher vertebrates, (IPR019610 from INTERPRO) [, ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM. ; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 3TBO_A 3FNV_B 3TBM_B 3TBN_A 3S2R_A 3S2Q_A 3LPQ_A 2QH7_A 3EW0_A 2R13_A ....
Probab=99.64 E-value=6e-17 Score=100.49 Aligned_cols=38 Identities=34% Similarity=0.668 Sum_probs=25.5
Q ss_pred ecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCc
Q psy4880 41 TMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHH 96 (137)
Q Consensus 41 ~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~ 96 (137)
+.||||.|+| +.. ..+.+++|||||+|+|+|||||||+
T Consensus 1 t~~~P~~v~g--~~~----------------~~~~~~~lC~Cg~S~~~PfCDGsH~ 38 (38)
T PF09360_consen 1 TDNGPYKVEG--DTE----------------LEKGTYALCRCGKSKNKPFCDGSHK 38 (38)
T ss_dssp -TTSSEEEEE--CGG----------------CSTSEEEE-SSS--TTTTB--SHHH
T ss_pred CCCcCEEEEe--eEE----------------ecCCEEEEecCCCCCCCCccCCcCC
Confidence 4799999999 111 1136899999999999999999995
No 4
>smart00704 ZnF_CDGSH CDGSH-type zinc finger. Function unknown.
Probab=99.53 E-value=8.7e-15 Score=91.07 Aligned_cols=27 Identities=48% Similarity=1.073 Sum_probs=24.5
Q ss_pred CCceEEEeecCCCCCcccCCCCccCcc
Q psy4880 74 TDFTAFCRCWRSRDFPYCNGFHHDYNK 100 (137)
Q Consensus 74 ~~~~alCrCg~S~~~PfCDGSH~~~~~ 100 (137)
...++||+||+|+|+|||||||+..++
T Consensus 11 ~~~~~lC~C~~S~~~PfCDGsH~~~~~ 37 (38)
T smart00704 11 REKYALCRCGRSKNFPYCDGSHKKHNE 37 (38)
T ss_pred CCEEEEeeCCCCCCCCccCCcccCcCc
Confidence 457999999999999999999998776
No 5
>KOG4605|consensus
Probab=99.01 E-value=3.8e-10 Score=86.30 Aligned_cols=45 Identities=24% Similarity=0.487 Sum_probs=38.3
Q ss_pred CCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccccCCccc
Q psy4880 74 TDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTL 121 (137)
Q Consensus 74 ~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~~~P~~~ 121 (137)
+.++.||-||+|+.+|||||||+..+ --++.|+.+.++++--+++
T Consensus 55 ~KtY~WCsCG~S~sQPfCDGsHk~~~---~tklrPvrFkvektg~~wl 99 (129)
T KOG4605|consen 55 GKTYRWCSCGRSKSQPFCDGSHKFQG---RTKLRPVRFKVEKTGMVWL 99 (129)
T ss_pred CCEEEEEeccccCCCccccccccccc---cccccceEeEecccceEEe
Confidence 35899999999999999999998755 4469999999998766664
No 6
>KOG4605|consensus
Probab=97.96 E-value=5.5e-06 Score=63.65 Aligned_cols=27 Identities=30% Similarity=0.740 Sum_probs=23.6
Q ss_pred CCceEEEeecCCCCCcccCCCCccCcc
Q psy4880 74 TDFTAFCRCWRSRDFPYCNGFHHDYNK 100 (137)
Q Consensus 74 ~~~~alCrCg~S~~~PfCDGSH~~~~~ 100 (137)
...++||.|+++.+.|||||+|+....
T Consensus 94 tg~~wlCnCKqT~~rP~CDGtH~~~~~ 120 (129)
T KOG4605|consen 94 TGMVWLCNCKQTQRRPYCDGTHRSERV 120 (129)
T ss_pred cceEEeecccccCCCCccCCccccccc
Confidence 357999999999999999999986544
No 7
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=16.08 E-value=72 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=9.8
Q ss_pred hhhHHHHhccccceee
Q psy4880 9 ICLWTALVGGAYGEFR 24 (137)
Q Consensus 9 ~~~~~~~~~~a~~~~~ 24 (137)
|.|..++.|||+-||.
T Consensus 166 lllv~l~gGGa~yYfK 181 (218)
T PF14283_consen 166 LLLVALIGGGAYYYFK 181 (218)
T ss_pred HHHHHHhhcceEEEEE
Confidence 3444456678887763
No 8
>PRK09697 protein secretion protein GspB; Provisional
Probab=15.54 E-value=44 Score=26.10 Aligned_cols=16 Identities=50% Similarity=1.070 Sum_probs=9.5
Q ss_pred hhhhHHH--Hhcccccee
Q psy4880 8 LICLWTA--LVGGAYGEF 23 (137)
Q Consensus 8 ~~~~~~~--~~~~a~~~~ 23 (137)
+||||.| ++-|.|+++
T Consensus 36 ~~~L~~AG~~~~GGYA~Q 53 (139)
T PRK09697 36 LICLWFAGMVLVGGYARQ 53 (139)
T ss_pred HHHHHHhcceeechhHHH
Confidence 5788876 233446665
No 9
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=13.05 E-value=2.2e+02 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.374 Sum_probs=12.1
Q ss_pred CceEEEeecCCCCCcccCC
Q psy4880 75 DFTAFCRCWRSRDFPYCNG 93 (137)
Q Consensus 75 ~~~alCrCg~S~~~PfCDG 93 (137)
+++.-|.||+| |||=
T Consensus 68 ~rv~rcecghs----f~d~ 82 (165)
T COG4647 68 KRVIRCECGHS----FGDY 82 (165)
T ss_pred ccEEEEecccc----ccCh
Confidence 57999999998 6664
No 10
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=11.68 E-value=93 Score=22.18 Aligned_cols=6 Identities=50% Similarity=1.669 Sum_probs=0.0
Q ss_pred ccCCCC
Q psy4880 90 YCNGFH 95 (137)
Q Consensus 90 fCDGSH 95 (137)
||||.|
T Consensus 57 YCdGM~ 62 (75)
T PF05798_consen 57 YCDGMD 62 (75)
T ss_pred hccCCC
Done!