Query psy4880
Match_columns 137
No_of_seqs 140 out of 633
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 20:12:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4880.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4880hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ezf_A Mitoneet, CDGSH iron-su 99.8 5.2E-22 1.8E-26 139.3 1.8 66 49-115 10-76 (77)
2 3fnv_A CDGSH iron sulfur domai 99.8 6.9E-22 2.4E-26 140.3 1.3 66 49-115 16-82 (83)
3 3s2r_A AT5G51720/MIO24_14; red 99.8 6.3E-22 2.2E-26 140.4 0.6 63 50-113 19-82 (83)
4 3tbm_A Putative uncharacterize 99.8 7.2E-21 2.5E-25 130.9 4.2 59 36-102 8-66 (69)
5 3ew0_A Mitoneet, CDGSH iron su 99.8 4.7E-20 1.6E-24 130.1 1.9 63 36-115 17-79 (80)
6 3tbo_A Zinc finger, CDGSH-type 99.6 6.9E-17 2.4E-21 108.7 2.5 45 37-103 4-48 (60)
7 3tbn_A Putative uncharacterize 99.4 8.3E-14 2.8E-18 99.6 4.0 39 75-119 28-66 (87)
8 3tbn_A Putative uncharacterize 98.9 5.4E-10 1.8E-14 79.8 1.9 25 74-98 63-87 (87)
9 2j5h_A Teratocarcinoma-derived 36.8 10 0.00034 23.4 0.6 22 72-93 13-41 (41)
10 2kxa_A Haemagglutinin HA2 chai 26.5 15 0.0005 21.3 0.1 21 6-26 8-28 (30)
No 1
>4ezf_A Mitoneet, CDGSH iron-sulfur domain-containing protein 1; 2Fe-2S proteins, membrane, mitochondrion, signal-anchor, transmembrane; 1.19A {Homo sapiens} PDB: 2qd0_A 3ree_A 2r13_A 3ew0_A 2qh7_A 4f1e_A 4f2c_A 4f28_A 3lpq_A
Probab=99.83 E-value=5.2e-22 Score=139.26 Aligned_cols=66 Identities=44% Similarity=0.938 Sum_probs=61.8
Q ss_pred ecCCCcccccCCCceeeeccCCCCCCC-ceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880 49 LVHVNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115 (137)
Q Consensus 49 ~G~V~l~I~~~~~gkvVd~~~~e~l~~-~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~ 115 (137)
.+.||+.|+.+ +.++|+.+++|++++ +++|||||+|+++|||||||.+++.++|+|++|++++.++
T Consensus 10 ~~~vN~~i~kd-~pKVVd~~diEdl~~~k~~~CrC~~Sk~~PfCDGsH~~hn~etGdnvgPl~~~~k~ 76 (77)
T 4ezf_A 10 KAMINLHIQKD-NPKIVHAFDMEDLGDAKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 76 (77)
T ss_dssp TTCSCSSSCTT-SSSEEEEEESBTTSCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECBC
T ss_pred ccccccceecC-CCcEeeccchhhcCCccEEEEeCCCCCCCCccCCchhhhccccCCCccCeEEEecc
Confidence 57889999998 789999999999987 9999999999999999999999999999999999999854
No 2
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane bound, thiazolidinedione, oxidative stres endoplasmic reticulum, membrane; 2.10A {Homo sapiens}
Probab=99.83 E-value=6.9e-22 Score=140.28 Aligned_cols=66 Identities=39% Similarity=0.864 Sum_probs=61.3
Q ss_pred ecCCCcccccCCCceeeeccCCCCCC-CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880 49 LVHVNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115 (137)
Q Consensus 49 ~G~V~l~I~~~~~gkvVd~~~~e~l~-~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~ 115 (137)
.+.||+.|+.+ +.++|+.++++++. ++++|||||+|+++|||||||++++.++|+|++|++++..+
T Consensus 16 ~~~vN~~I~k~-~pKvVd~~diedl~~~k~~~CrC~~S~~~PfCDGsH~~~n~etGdnvgPli~~~k~ 82 (83)
T 3fnv_A 16 DSLINLKIQKE-NPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPLILKKKE 82 (83)
T ss_dssp CCCSCSSSCTT-SSSEEEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCEEEEEEECCC
T ss_pred ccccCcceecC-CCcEeeeechhhccCCCEEEEeCCCCCCCCccCchhhhcccccCCccCCeEEEecc
Confidence 47789999998 78999999999998 89999999999999999999999999999999999998743
No 3
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein; 1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Probab=99.82 E-value=6.3e-22 Score=140.38 Aligned_cols=63 Identities=48% Similarity=0.951 Sum_probs=59.0
Q ss_pred cCCCcccccCCCceeeeccCCCCCC-CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEc
Q psy4880 50 VHVNPDIHKNHADKIVDYFDKPNLT-DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRR 113 (137)
Q Consensus 50 G~V~l~I~~~~~gkvVd~~~~e~l~-~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~ 113 (137)
+.||+.|+++ +.|+||.++++++. ++++|||||+|+++|||||||.+++.++|+|++|++++.
T Consensus 19 ~~vN~~I~K~-~~KVVD~vdiedl~~~~~~~CrC~~Sk~~P~CDGSH~k~n~etGdNvgPlivkk 82 (83)
T 3s2r_A 19 GGINPEIRKN-EDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPLLLKK 82 (83)
T ss_dssp -CCCSSTTTT-SSSCCEEEEGGGCCSSEEEECSSSCCTTTTBCCSHHHHHHHHHTCCEEEEEEEC
T ss_pred CccCchhhcC-CCceecccchhhccCCceEEEecCCCCCCCccCchhHHHhhhcCCCcCCeEEec
Confidence 6889999999 89999999999998 699999999999999999999999999999999999875
No 4
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal binding protein; HET: 2PE TLA; 1.80A {Ralstonia solanacearum}
Probab=99.81 E-value=7.2e-21 Score=130.94 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=46.8
Q ss_pred CCeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccC
Q psy4880 36 PPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLL 102 (137)
Q Consensus 36 ~~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~ 102 (137)
..|++++||||+|+|+ ++|... +|+.+. ..+..++|||||+|+|+|||||||+..+|..
T Consensus 8 ~~I~v~~nGPl~V~G~--v~i~~~-dG~~~~-----~~~~~~~lC~Cg~S~n~PfCDGsH~~~~f~~ 66 (69)
T 3tbm_A 8 VVITARNNGPYHIKGS--FRIVTQ-GGRELP-----VEQGQAWLCRCGHSLNKPFCDGSHKRVEFDS 66 (69)
T ss_dssp CEEEECTTSCEEEESS--CEEEES-SCCEEC-----CBTTEEEECCSSCCSSTTBCCSHHHHTTCCC
T ss_pred eEEEEeCCCCEEEECC--CeEECC-CCCEEe-----eCCCEEEEeeCCCCCCCCccCCCcCCCCccc
Confidence 3579999999999994 566655 344331 1246899999999999999999999999964
No 5
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1; mitochondrial outer membrane, 2Fe-2S proteins, isotopic LABE highyield expression; 1.40A {Homo sapiens} PDB: 2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Probab=99.77 E-value=4.7e-20 Score=130.13 Aligned_cols=63 Identities=37% Similarity=0.862 Sum_probs=53.5
Q ss_pred CCeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccc
Q psy4880 36 PPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSK 115 (137)
Q Consensus 36 ~~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~ 115 (137)
..+.|.+|||++|+. ++ .+++...++|||||+|+|+|||||||+++++++|+|++|++++.++
T Consensus 17 vni~I~k~gP~~V~~-~~----------------led~~~~~~~C~Cg~S~~~PfCDGsH~~~~~etgdnvgPl~~~~~~ 79 (80)
T 3ew0_A 17 INLHIQKDNPKIVHA-FD----------------MEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKKE 79 (80)
T ss_dssp SCSSSCTTSSSEEEE-EC----------------GGGCCSEEEECSSSCCTTTTBCCSHHHHHHHHHCCCCCCEEEECCC
T ss_pred cCeEEeCCCCEEEEe-ec----------------cccCCCeEEEeeCCCCCCCcccCCccCCcCcccCCCcCCEEEEecc
Confidence 566889999999994 22 2233468999999999999999999999999999999999999864
No 6
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal binding protein; 1.50A {Pyrobaculum calidifontis}
Probab=99.63 E-value=6.9e-17 Score=108.74 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=37.2
Q ss_pred CeEEecCCCEEEecCCCcccccCCCceeeeccCCCCCCCceEEEeecCCCCCcccCCCCccCcccCC
Q psy4880 37 PFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLG 103 (137)
Q Consensus 37 ~~~i~~NGPllV~G~V~l~I~~~~~gkvVd~~~~e~l~~~~alCrCg~S~~~PfCDGSH~~~~~~~g 103 (137)
.+++.+||||.|+- + ...++|||||+|+|+|||||||+..+|...
T Consensus 4 ~I~v~~ngP~~v~~------------------e----~~~~~lC~CG~S~n~PFCDGSHk~~~f~~~ 48 (60)
T 3tbo_A 4 EIRAIENGPYEVKI------------------G----GRAIYLCRCGHSGSKPHCDGTHAKVGFKAP 48 (60)
T ss_dssp EEEECTTSCEEEEC-------------------------CEEECCSSCCTTTTBCCSHHHHHTCCCC
T ss_pred EEEEeCCCCEEEEE------------------C----CcEEEEEECCCCCCCCccCCcCCCCccccC
Confidence 47899999999982 1 135699999999999999999999988654
No 7
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=99.42 E-value=8.3e-14 Score=99.59 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=32.5
Q ss_pred CceEEEeecCCCCCcccCCCCccCcccCCCcccceEEEccccCCc
Q psy4880 75 DFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPF 119 (137)
Q Consensus 75 ~~~alCrCg~S~~~PfCDGSH~~~~~~~g~~~~P~~~~~~~~~P~ 119 (137)
..++||+||+|+|+|||||||+..+ +.|+.++.+++..+
T Consensus 28 ~~~~~C~CG~S~~~PfCDGSH~~~~------f~P~~f~~e~~~~~ 66 (87)
T 3tbn_A 28 KTYHWCACGRSKAQPFCDGSHKGTG------LAPVAYTPDKAGTA 66 (87)
T ss_dssp CCEEECSSSCCSSTTBCCSTTTTTT------CCCEEECCSSCEEE
T ss_pred CEEEEeeCCCCCCCCCcCCccccCC------ccceEEEECCCcEE
Confidence 4789999999999999999998743 67888888775444
No 8
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2, metal binding protein; 1.15A {Magnetospirillum magneticum}
Probab=98.87 E-value=5.4e-10 Score=79.85 Aligned_cols=25 Identities=32% Similarity=0.732 Sum_probs=22.5
Q ss_pred CCceEEEeecCCCCCcccCCCCccC
Q psy4880 74 TDFTAFCRCWRSRDFPYCNGFHHDY 98 (137)
Q Consensus 74 ~~~~alCrCg~S~~~PfCDGSH~~~ 98 (137)
.+.++||+|++|+|.|||||||+++
T Consensus 63 ~~~~~lC~CK~T~n~PfCDGsH~~L 87 (87)
T 3tbn_A 63 AGTAYFCGCKASKAPPLCDGTHKTL 87 (87)
T ss_dssp CEEEEECSSSCCSSTTBCCSGGGTC
T ss_pred CcEEEEecCCCCCCCCccCCcCCcC
Confidence 4679999999999999999999863
No 9
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=36.77 E-value=10 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.889 Sum_probs=15.0
Q ss_pred CCCCceEEEeecCCC-------CCcccCC
Q psy4880 72 NLTDFTAFCRCWRSR-------DFPYCNG 93 (137)
Q Consensus 72 ~l~~~~alCrCg~S~-------~~PfCDG 93 (137)
.+...-.||||+... ..|=|||
T Consensus 13 W~~k~C~LCRC~~G~LhCfp~~~~~~CD~ 41 (41)
T 2j5h_A 13 WLPKKCSLCRCWHGQLHCLPQTFLPGCDX 41 (41)
T ss_dssp CSSCCCCCCCCCSSSCCSCCSSSSTTCC-
T ss_pred eeecCceEEEeecCceEEcccccCCCCCC
Confidence 345678999999754 4566775
No 10
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=26.46 E-value=15 Score=21.31 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=15.0
Q ss_pred eehhhhHHHHhccccceeeCC
Q psy4880 6 SFLICLWTALVGGAYGEFRGD 26 (137)
Q Consensus 6 ~~~~~~~~~~~~~a~~~~~~~ 26 (137)
-|+.--|+.++-|-|++++-+
T Consensus 8 GfieggW~gmi~gwyG~~h~n 28 (30)
T 2kxa_A 8 GFIEGGWTGMIDGWYGSGKKK 28 (30)
T ss_dssp HHHHHHHHHHHHHHHCC----
T ss_pred hhhhcCcccccccccceeecc
Confidence 367788999999999998754
Done!