Query psy4880
Match_columns 137
No_of_seqs 140 out of 633
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 20:12:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4880.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4880hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j5ha1 g.3.11.7 (A:1-39) Crip 20.4 9.2 0.00067 21.9 -0.2 16 72-87 12-27 (39)
2 d1dkca_ g.3.4.2 (A:) Antifunga 20.2 20 0.0015 20.2 1.3 14 81-94 9-22 (38)
3 d1d0qa_ g.41.3.2 (A:) Zinc-bin 9.5 71 0.0051 20.0 1.9 19 75-99 32-50 (102)
4 d1i4ma_ d.6.1.1 (A:) Prion pro 8.7 40 0.0029 22.8 0.3 22 14-35 2-27 (108)
5 d1yoba1 c.23.5.1 (A:1-179) Fla 8.3 65 0.0047 22.2 1.4 21 75-95 89-111 (179)
6 d1mm0a_ g.3.7.4 (A:) Antimicro 7.8 38 0.0028 18.8 -0.1 10 88-97 21-30 (36)
7 d1v54g_ f.23.2.1 (G:) Mitochon 6.9 98 0.0071 19.6 1.7 16 84-99 56-71 (84)
8 d1tg7a1 b.149.1.1 (A:570-666) 6.6 1E+02 0.0073 19.9 1.6 11 40-50 31-41 (97)
9 d1v54f_ g.41.5.3 (F:) Cytochro 6.6 1.2E+02 0.0088 19.6 2.0 28 24-52 26-53 (98)
10 d1ik0a_ a.26.1.2 (A:) Interleu 6.0 87 0.0063 21.1 1.0 18 86-103 24-42 (113)
No 1
>d2j5ha1 g.3.11.7 (A:1-39) Cripto growth factor {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.40 E-value=9.2 Score=21.92 Aligned_cols=16 Identities=31% Similarity=0.848 Sum_probs=12.2
Q ss_pred CCCCceEEEeecCCCC
Q psy4880 72 NLTDFTAFCRCWRSRD 87 (137)
Q Consensus 72 ~l~~~~alCrCg~S~~ 87 (137)
.+..+-++|||++-.-
T Consensus 12 w~~k~CslCrC~~G~l 27 (39)
T d2j5ha1 12 WLPKKCSLCRCWHGQL 27 (39)
T ss_dssp CSSCCCCCCCCCSSSC
T ss_pred eecccceEEEeccCce
Confidence 3456889999998654
No 2
>d1dkca_ g.3.4.2 (A:) Antifungal peptide PAFP-S {Pokeweed (Phytolacca americana) [TaxId: 3527]}
Probab=20.19 E-value=20 Score=20.17 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=12.0
Q ss_pred eecCCCCCcccCCC
Q psy4880 81 RCWRSRDFPYCNGF 94 (137)
Q Consensus 81 rCg~S~~~PfCDGS 94 (137)
||-.|...|||=.+
T Consensus 9 rcn~~~gppyccs~ 22 (38)
T d1dkca_ 9 RCNASAGPPYCCSS 22 (38)
T ss_dssp EECTTSCCCCCSSS
T ss_pred eecccCCCCceech
Confidence 79999999999654
No 3
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=9.50 E-value=71 Score=20.03 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=13.9
Q ss_pred CceEEEeecCCCCCcccCCCCccCc
Q psy4880 75 DFTAFCRCWRSRDFPYCNGFHHDYN 99 (137)
Q Consensus 75 ~~~alCrCg~S~~~PfCDGSH~~~~ 99 (137)
++.+.|.| |||+..|..+.
T Consensus 32 G~~~~~~C------Pfh~d~~~S~~ 50 (102)
T d1d0qa_ 32 GRNYFGLC------PFHGEKTPSFS 50 (102)
T ss_dssp TTEEEECC------SSSCCSSCCEE
T ss_pred CCceEEec------cccCCCCccee
Confidence 45677888 99988876543
No 4
>d1i4ma_ d.6.1.1 (A:) Prion protein domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.67 E-value=40 Score=22.83 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=16.2
Q ss_pred HHhccccceeeCC----CCCCCCCCC
Q psy4880 14 ALVGGAYGEFRGD----PNYHTETPS 35 (137)
Q Consensus 14 ~~~~~a~~~~~~~----~~~~~~~ps 35 (137)
|+||||.+|--|. |.++=.+|.
T Consensus 2 av~g~~~gY~lG~am~rp~~~F~np~ 27 (108)
T d1i4ma_ 2 AVVGGLGGYMLGSAMSRPIIHFGSDY 27 (108)
T ss_dssp CCCTTCTTCEECCCCCCCCCCCSSHH
T ss_pred ccchhhhhhhhcccCCCCCcCCCChH
Confidence 6789999998887 566655554
No 5
>d1yoba1 c.23.5.1 (A:1-179) Flavodoxin {Azotobacter vinelandii [TaxId: 354]}
Probab=8.26 E-value=65 Score=22.17 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.7
Q ss_pred CceEEEeecCCCCCc--ccCCCC
Q psy4880 75 DFTAFCRCWRSRDFP--YCNGFH 95 (137)
Q Consensus 75 ~~~alCrCg~S~~~P--fCDGSH 95 (137)
.+++++.||-|...+ |||+..
T Consensus 89 ~~~avfGlGDs~~~~~~Fc~a~~ 111 (179)
T d1yoba1 89 KTVALFGLGDQVGYPENYLDALG 111 (179)
T ss_dssp CEEEEEEECCTTTCTTTTTHHHH
T ss_pred cEEEEEEecCCcccchhHHHHHH
Confidence 579999999998654 999885
No 6
>d1mm0a_ g.3.7.4 (A:) Antimicrobial peptide termicin {Termite (Pseudacanthotermes spiniger) [TaxId: 115113]}
Probab=7.84 E-value=38 Score=18.82 Aligned_cols=10 Identities=10% Similarity=0.418 Sum_probs=6.5
Q ss_pred CcccCCCCcc
Q psy4880 88 FPYCNGFHHD 97 (137)
Q Consensus 88 ~PfCDGSH~~ 97 (137)
.-|||||--+
T Consensus 21 rA~Cdgs~C~ 30 (36)
T d1mm0a_ 21 RAFCDRSQCK 30 (36)
T ss_dssp EEEEETTEEE
T ss_pred eeeecCCceE
Confidence 3578888543
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.94 E-value=98 Score=19.65 Aligned_cols=16 Identities=25% Similarity=0.644 Sum_probs=12.1
Q ss_pred CCCCCcccCCCCccCc
Q psy4880 84 RSRDFPYCNGFHHDYN 99 (137)
Q Consensus 84 ~S~~~PfCDGSH~~~~ 99 (137)
|++++|+=||-|....
T Consensus 56 R~K~FpWGDG~~tLFh 71 (84)
T d1v54g_ 56 RTKPFSWGDGNHTFFH 71 (84)
T ss_dssp CSSCCSSTTSSSCTTC
T ss_pred hccccCCCCCCccccc
Confidence 4568899999987643
No 8
>d1tg7a1 b.149.1.1 (A:570-666) Beta-galactosidase LacA, domain 3 {Penicillium sp. [TaxId: 5081]}
Probab=6.60 E-value=1e+02 Score=19.91 Aligned_cols=11 Identities=9% Similarity=-0.046 Sum_probs=7.0
Q ss_pred EecCCCEEEec
Q psy4880 40 MTMAGPTHVLV 50 (137)
Q Consensus 40 i~~NGPllV~G 50 (137)
|.=+|||+|+.
T Consensus 31 VlV~GpYLVRs 41 (97)
T d1tg7a1 31 IIVKAGYLVRS 41 (97)
T ss_dssp CEEECSSEEEE
T ss_pred EEEECCcEEEE
Confidence 33368888765
No 9
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.57 E-value=1.2e+02 Score=19.58 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=16.3
Q ss_pred eCCCCCCCCCCCCCeEEecCCCEEEecCC
Q psy4880 24 RGDPNYHTETPSPPFFMTMAGPTHVLVHV 52 (137)
Q Consensus 24 ~~~~~~~~~~ps~~~~i~~NGPllV~G~V 52 (137)
.|..-|+.+.+..+ +=+++-|.+|..-.
T Consensus 26 ~g~D~fd~~~~~~~-~GTke~P~lVpS~~ 53 (98)
T d1v54f_ 26 KGQDPYNILAPKAT-SGTKEDPNLVPSIT 53 (98)
T ss_dssp TTCCTTCCSCCCCC-CCCSSSCEEEECSS
T ss_pred cCCChhhccCCcCC-CCCCcCCcEecCCC
Confidence 45566666555444 24556677776643
No 10
>d1ik0a_ a.26.1.2 (A:) Interleukin-13 (IL-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.03 E-value=87 Score=21.11 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=11.7
Q ss_pred CCCcccCCCCc-cCcccCC
Q psy4880 86 RDFPYCNGFHH-DYNKLLG 103 (137)
Q Consensus 86 ~~~PfCDGSH~-~~~~~~g 103 (137)
++.|+|.||-. .+++.++
T Consensus 24 qkapLCNGSMVWsVnlta~ 42 (113)
T d1ik0a_ 24 QKAPLCNGSMVWSINLTAG 42 (113)
T ss_dssp CSSCSSSSCEEECCCCSTT
T ss_pred ccCcccCCceEEEEecCcc
Confidence 46799999963 3444433
Done!