RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4880
(137 letters)
>3ew0_A Mitoneet, CDGSH iron sulfur domain-containing protein 1;
mitochondrial outer membrane, 2Fe-2S proteins, isotopic
LABE highyield expression; 1.40A {Homo sapiens} PDB:
2r13_A 2qd0_A 3ree_A 2qh7_A 3lpq_A
Length = 80
Score = 79.0 bits (194), Expect = 1e-20
Identities = 29/65 (44%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 51 HVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPIL 110
+N I K KIV FD +L D +CRCWRS+ FP+C+G H +N+ GDNVGP++
Sbjct: 16 MINLHIQK-DNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLI 74
Query: 111 IRRSK 115
I++ +
Sbjct: 75 IKKKE 79
>3s2r_A AT5G51720/MIO24_14; redox, Fe-S cluster, metal binding protein;
1.14A {Arabidopsis thaliana} PDB: 3s2q_A
Length = 83
Score = 76.3 bits (187), Expect = 2e-19
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 51 HVNPDIHKNHADKIVDYFDKPNLTD-FTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPI 109
+NP+I K + DK+VD L+ T +CRCWRS FP C+G +NK GDNVGP+
Sbjct: 20 GINPEIRK-NEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSCVKHNKANGDNVGPL 78
Query: 110 LIRR 113
L+++
Sbjct: 79 LLKK 82
>3fnv_A CDGSH iron sulfur domain-containing protein 2; diabetes, membrane
bound, thiazolidinedione, oxidative stres endoplasmic
reticulum, membrane; 2.10A {Homo sapiens}
Length = 83
Score = 75.6 bits (185), Expect = 3e-19
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 51 HVNPDIHKNHADKIVDYFDKPNL-TDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPI 109
+N I K K+V+ + +L A+CRCWRS+ FP C+G H+ +N+L GDNVGP+
Sbjct: 18 LINLKIQK-ENPKVVNEINIEDLSLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNVGPL 76
Query: 110 LIRRSKL 116
++++ ++
Sbjct: 77 ILKKKEV 83
>3tbm_A Putative uncharacterized protein; iron-sulfur, CDGSH, metal
binding protein; HET: 2PE TLA; 1.80A {Ralstonia
solanacearum}
Length = 69
Score = 34.4 bits (79), Expect = 0.001
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 76 FTAFCRCWRSRDFPYCNGFH 95
CRC S + P+C+G H
Sbjct: 40 QAWLCRCGHSLNKPFCDGSH 59
>3tbo_A Zinc finger, CDGSH-type domain protein; iron-sulfur, metal
binding protein; 1.50A {Pyrobaculum calidifontis}
Length = 60
Score = 31.4 bits (71), Expect = 0.012
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 61 ADKIVDYFDKPNLTDF----TAFCRCWRSRDFPYCNGFH 95
A +I + P CRC S P+C+G H
Sbjct: 2 AVEIRAIENGPYEVKIGGRAIYLCRCGHSGSKPHCDGTH 40
>3tbn_A Putative uncharacterized protein; CDGSH, iron-sulfur, miner2,
metal binding protein; 1.15A {Magnetospirillum
magneticum}
Length = 87
Score = 29.3 bits (65), Expect = 0.13
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 70 KPNLTDFTAFCRCWRSRDFPYCNGFH 95
P+ FC C S+ P C+G H
Sbjct: 59 TPDKAGTAYFCGCKASKAPPLCDGTH 84
Score = 27.0 bits (59), Expect = 0.91
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 78 AFCRCWRSRDFPYCNGFHHDYN 99
+C C RS+ P+C+G H
Sbjct: 31 HWCACGRSKAQPFCDGSHKGTG 52
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.29
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 30/91 (32%)
Query: 43 AGPTHVLVHVNPDIHKNHADKIVDY----FD--KPNL-TDF---TAFCRCWRSRDFPYCN 92
+GP L +N + K A +D F K F + P
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS----------P--- 426
Query: 93 GFHHDY-----NKLLGD-NVGPILIRRSKLK 117
FH + + D + ++
Sbjct: 427 -FHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 28.7 bits (65), Expect = 0.51
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 13/62 (20%)
Query: 76 FTAFCRCWRSR---DFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHY 132
F + + D+ + N KL GD G +L +K LE
Sbjct: 102 FDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKG----------EILEKI 151
Query: 133 CA 134
Sbjct: 152 AK 153
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 28.0 bits (63), Expect = 0.79
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 10/62 (16%)
Query: 73 LTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHY 132
T R D + N + + L G G ++ SK + L
Sbjct: 101 FDLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGE----------MLLVL 150
Query: 133 CA 134
Sbjct: 151 QR 152
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 27.8 bits (62), Expect = 1.1
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 13/62 (20%)
Query: 76 FTAFCRCWRSR---DFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHY 132
FT F + + D+ N KL G +G ++ ++K L
Sbjct: 204 FTYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKA----------DILLTL 253
Query: 133 CA 134
Sbjct: 254 AQ 255
>3csk_A Probable dipeptidyl-peptidase 3; Zn-hydrolase, aminodipeptidase,
hexxgh-motif, aminopeptidase hydrolase, metal-binding,
metalloprotease; 1.95A {Saccharomyces cerevisiae}
Length = 711
Score = 27.9 bits (61), Expect = 1.2
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 55 DIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFP---YCNGFHHDYNKLLG 103
D K + +++F + + W P GF Y + G
Sbjct: 281 DTQKAMLQEYINHFVTGSSQAHKEAQKLWVKDISPVIETNIGFIETYREPSG 332
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 27.8 bits (62), Expect = 1.2
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 13/63 (20%)
Query: 75 DFTAFCRCWRSR---DFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEH 131
F + ++R D+ + N N L + PI+ +K + L
Sbjct: 204 GLDIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKK----------QTLVD 253
Query: 132 YCA 134
A
Sbjct: 254 LAA 256
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 27.5 bits (61), Expect = 1.6
Identities = 13/62 (20%), Positives = 16/62 (25%), Gaps = 13/62 (20%)
Query: 76 FTAFCRCWRSR---DFPYCNGFHHDYNKLLGDNVGPILIRRSKLKPFTLATPRPRALEHY 132
F D+ N L G VGPI+ R K AL +
Sbjct: 282 FRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKA----------TALREF 331
Query: 133 CA 134
Sbjct: 332 AQ 333
>3fvy_A Dipeptidyl-peptidase 3; SGC, DPP3, alternative splicing,
aminopeptidase, cytoplasm, hydrolase, metal-binding,
metalloprotease, phosphoprotein; 1.90A {Homo sapiens}
PDB: 3t6b_A 3t6j_A
Length = 728
Score = 27.1 bits (59), Expect = 2.0
Identities = 7/47 (14%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 55 DIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFP---YCNGFHHDY 98
+ ++ F + ++ R W P GF Y
Sbjct: 274 SHQGQMLAQYIESFTQGSIEAHKRGSRFWIQDKGPIVESYIGFIESY 320
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein
structure initiative, midwest center for structural
genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP:
c.47.1.13
Length = 175
Score = 25.9 bits (57), Expect = 4.7
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 17/75 (22%)
Query: 63 KIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHDYNKLLGDNVGPILIRRS-KLKPFTL 121
K++++ + C PYC + + +LL +V + R KL
Sbjct: 30 KMIEFIN------VR----C------PYCRKWFEESEELLAQSVKSGKVERIIKLFDKEK 73
Query: 122 ATPRPRALEHYCASR 136
+ + + H+
Sbjct: 74 ESLQRGNVMHHYIDY 88
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 25.4 bits (56), Expect = 6.0
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 25 GDPNYHTETPSPPFFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPN 72
DP + PS H + + PD + + D PN
Sbjct: 147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPD---GSPLQRMADLDHPN 191
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.487
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,295,352
Number of extensions: 126324
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 23
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)