RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4880
         (137 letters)



>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 318

 Score = 26.9 bits (59), Expect = 0.98
 Identities = 7/66 (10%), Positives = 17/66 (25%)

Query: 38  FFMTMAGPTHVLVHVNPDIHKNHADKIVDYFDKPNLTDFTAFCRCWRSRDFPYCNGFHHD 97
             + +         ++    +  A  +    +    TD   F     +R   +       
Sbjct: 150 LVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDK 209

Query: 98  YNKLLG 103
           Y  + G
Sbjct: 210 YMTISG 215


>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 26.3 bits (58), Expect = 1.5
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 37  PFFMTMAGPTHVLVHVNPD-IHKNHADKIVD-YFDKPNLTDFTAFCRCWRSRDFPYCNGF 94
           P  +TM G   + + V+P  I +      +D   D  +L       +  +        G 
Sbjct: 172 PLAVTMNGGVCLAIEVDPARIQRRIDTNYLDTMTD--SLDAALEMAKQAKEEKKALSIGL 229

Query: 95  HHDYNKLL 102
             +  ++L
Sbjct: 230 VGNAAEVL 237


>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF
          {Aeropyrum pernix [TaxId: 56636]}
          Length = 70

 Score = 23.2 bits (50), Expect = 6.1
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 54 PDIHKNHADKIVDYFDKP 71
            I +  A++I      P
Sbjct: 51 EGIGEKRAEEIKKILMTP 68


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 24.4 bits (53), Expect = 6.2
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 29  YHTETPSPPFFMTMAGPTHVLVHVNPD-IHKNHADKIVD 66
                 + P   T+AG   + +      I      + VD
Sbjct: 172 LGGMGGAQPLAATLAGACSLNIESQQSRIDFRLETRYVD 210


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.143    0.487 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,859
Number of extensions: 25966
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 6
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.6 bits)